Psyllid ID: psy2684

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350------
Protein Sequence
MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHccccEEEEEEccccHHHHHHcEEEEEEcccccEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccccccHHHHHHHHHHccccccccccccccccEEEEccccccccccEEEEEcEEEEcccccccEEcccccccccccEEEEccccccHHHHHHHHHcccccccccEEEEEEcccccccHHHHccccccccccHHHHHHcccccccccccccccccEEEEccccccccccccccHHHHHHHHccccHHHHHHHHccccccccccccccccccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHcccHHHccHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccccccccEEEEccccccccccEEEEEEEEEEcccccEEEEEEEEEEccccEEEEEccccccHHHHHHHHHccccccccEEEcccEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccHHHccHHHccHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mqekstkefsggWRIRVSLARALFleptlllldeptnhldlnAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRvqkddddepkellekpreyivkfrfpnppylpppvlglhdvtfgypggKVLLEKVNfgldmesrvalvgpngigksTFLNLlkgeltpnkgKVLLEKVNfgldmesrvalvgpngigksTFLNLlkgeltpnkgelrksprlrigkfdqhsgehlfpddtpcEYLMKlfnlpyeksrrqlgmfglpsyahtipirdlsgGQKARVALAELTL
Flexible Loop (DISEMBL)
mqekstkefsggwrIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKaerqhshkalkeqarkrvqkddddepkellekpreyiVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNllkgeltpnkgelrksprlrigkfdqhsgehlfpddTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHtipirdlsggQKARVALAELTL
Low Complexity Region (SEG)
MQEKSTKEFSGGWRIRVSlaralfleptlllldeptNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQkddddepkellekpREYIVKFRFpnppylpppVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL
Disordered region (IsUnstruct)
*********SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKR************************************************************EYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL***********************EHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDL***************
Disordered Region (DISOPRED)
***KSTK*FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQK***************RE*KSQGMSKEKAERQHS*******************PKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT******RKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL
Disordered Region (DISEMBL)
**********GGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIRE***********************************PKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL
Disordered Region (DISPRO)
*****TKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKE*ARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFxxxxxxxxxxxxxxxxxxxxxxxxxxxxGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	356	2.2.26 [Sep-21-2011]
Q6P542	837	ATP-binding cassette sub-	yes	N/A	0.879	0.373	0.536	3e-91
Q6MG08	839	ATP-binding cassette sub-	yes	N/A	0.879	0.373	0.536	4e-91
Q767L0	807	ATP-binding cassette sub-	yes	N/A	0.879	0.387	0.533	1e-90
Q7YR37	807	ATP-binding cassette sub-	yes	N/A	0.879	0.387	0.533	2e-90
Q8NE71	845	ATP-binding cassette sub-	no	N/A	0.879	0.370	0.533	2e-90
Q9M1H3	723	ABC transporter F family	yes	N/A	0.876	0.431	0.434	6e-78
Q8H0V6	715	ABC transporter F family	no	N/A	0.842	0.419	0.388	3e-65
Q9FJH6	595	ABC transporter F family	no	N/A	0.851	0.509	0.396	2e-63
O42943	618	Uncharacterized ABC trans	yes	N/A	0.856	0.493	0.389	4e-60
Q8T6B4	1142	ABC transporter F family	no	N/A	0.842	0.262	0.371	3e-57

>sp|Q6P542|ABCF1_MOUSE ATP-binding cassette sub-family F member 1 OS=Mus musculus GN=Abcf1 PE=1 SV=1

 Score =  335 bits (859), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 192/358 (53%), Positives = 249/358 (69%), Gaps = 45/358 (12%)

Query: 1   MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLV 60
           MQ + T++FSGGWR+RVSLARALF+EPTLL+LDEPTNHLDLNAVIWL+NYLQ W+KTLL+
Sbjct: 436 MQNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQGWRKTLLI 495

Query: 61  VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKS 120
           VSHDQ FL+++CTDIIHLD ++L YY+GN+  FKKMY QK+KEL K+YE QEK+++E+K+
Sbjct: 496 VSHDQGFLDDVCTDIIHLDTQRLHYYRGNYMTFKKMYQQKQKELLKQYEKQEKKLKELKA 555

Query: 121 QGMSKEKAERQHSHKALKEQ--ARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPP 178
            G S ++AE+Q      ++Q   R++ Q ++  EP ELL++P+EY V+F FP+PP L PP
Sbjct: 556 GGKSTKQAEKQTKEVLTRKQQKCRRKNQDEESQEPPELLKRPKEYTVRFTFPDPPPLSPP 615

Query: 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
           VLGLH VTFGY G K L + ++FG+DM+SR+ +VGPNG+GKST L LL G+LTP  G   
Sbjct: 616 VLGLHGVTFGYEGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTNG--- 672

Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH 298
                                                   E+RK+ RL+IG F+Q   E 
Sbjct: 673 ----------------------------------------EMRKNHRLKIGFFNQQYAEQ 692

Query: 299 LFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356
           L  ++TP EYL + FNLPY+ +R+ LG FGL S+AHTI I  LSGGQKARV  AEL  
Sbjct: 693 LHMEETPTEYLQRSFNLPYQDARKCLGRFGLESHAHTIQICKLSGGQKARVVFAELAC 750

Required for efficient Cap- and IRES-mediated mRNA translation initiation. Not involved in the ribosome biogenesis.
Mus musculus (taxid: 10090)

>sp|Q6MG08|ABCF1_RAT ATP-binding cassette sub-family F member 1 OS=Rattus norvegicus GN=Abcf1 PE=1 SV=1

 Score =  335 bits (858), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 192/358 (53%), Positives = 249/358 (69%), Gaps = 45/358 (12%)

Query: 1   MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLV 60
           MQ + T++FSGGWR+RVSLARALF+EPTLL+LDEPTNHLDLNAVIWL+NYLQ W+KTLL+
Sbjct: 438 MQNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQGWRKTLLI 497

Query: 61  VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKS 120
           VSHDQ FL+++CTDIIHLD ++L YY+GN+  FKKMY QK+KEL K+YE QEK+++E+K+
Sbjct: 498 VSHDQGFLDDVCTDIIHLDTQRLHYYRGNYMTFKKMYQQKQKELLKQYEKQEKKLKELKA 557

Query: 121 QGMSKEKAERQHSHKALKEQ--ARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPP 178
            G S ++AE+Q      ++Q   R++ Q ++  +P ELL++PREY V+F FP+PP L PP
Sbjct: 558 GGKSTKQAEKQTKEVLTRKQQKCRRKNQDEESQDPPELLKRPREYTVRFTFPDPPPLSPP 617

Query: 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
           VLGLH VTFGY G K L + ++FG+DM+SR+ +VGPNG+GKST L LL G+LTP  G   
Sbjct: 618 VLGLHGVTFGYEGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTNG--- 674

Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH 298
                                                   E+RK+ RL+IG F+Q   E 
Sbjct: 675 ----------------------------------------EMRKNHRLKIGFFNQQYAEQ 694

Query: 299 LFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356
           L  ++TP EYL + FNLPY+ +R+ LG FGL S+AHTI I  LSGGQKARV  AEL  
Sbjct: 695 LHMEETPTEYLQRGFNLPYQDARKCLGRFGLESHAHTIQICKLSGGQKARVVFAELAC 752

Required for efficient Cap- and IRES-mediated mRNA translation initiation. Not involved in the ribosome biogenesis.

Rattus norvegicus (taxid: 10116)

>sp|Q767L0|ABCF1_PIG ATP-binding cassette sub-family F member 1 OS=Sus scrofa GN=ABCF1 PE=2 SV=1

 Score =  333 bits (854), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 191/358 (53%), Positives = 249/358 (69%), Gaps = 45/358 (12%)

Query: 1   MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLV 60
           MQ + T++FSGGWR+RVSLARALF+EPTLL+LDEPTNHLDLNAVIWL+NYLQ W+KTLL+
Sbjct: 406 MQNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQGWRKTLLI 465

Query: 61  VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKS 120
           VSHDQ FL+++CTDIIHLD ++L YY+GN+  FKKMY QK+KEL K+YE QEK+++E+K+
Sbjct: 466 VSHDQGFLDDVCTDIIHLDAQRLHYYRGNYMTFKKMYQQKQKELLKQYEKQEKKLKELKA 525

Query: 121 QGMSKEKAERQHSHKALKEQ--ARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPP 178
            G S ++AE+Q      ++Q   R++ Q ++  E  ELL++P+EY V+F FP+PP L PP
Sbjct: 526 GGKSTKQAEKQTKEALTRKQQKCRRKNQDEESQEAPELLKRPKEYTVRFTFPDPPPLSPP 585

Query: 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
           VLGLH VTFGY G K L + ++FG+DM+SR+ +VGPNG+GKST L LL G+LTP +G   
Sbjct: 586 VLGLHGVTFGYEGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTRG--- 642

Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH 298
                                                   E+RK+ RL+IG F+Q   E 
Sbjct: 643 ----------------------------------------EMRKNHRLKIGFFNQQYAEQ 662

Query: 299 LFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356
           L  ++TP EYL + FNLPY+ +R+ LG FGL S+AHTI I  LSGGQKARV  AEL  
Sbjct: 663 LRMEETPTEYLQRGFNLPYQDARKCLGRFGLESHAHTIQICKLSGGQKARVVFAELAC 720

Required for efficient Cap- and IRES-mediated mRNA translation initiation. Not involved in the ribosome biogenesis.

Sus scrofa (taxid: 9823)

>sp|Q7YR37|ABCF1_PANTR ATP-binding cassette sub-family F member 1 OS=Pan troglodytes GN=ABCF1 PE=3 SV=1

 Score =  332 bits (852), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 191/358 (53%), Positives = 248/358 (69%), Gaps = 45/358 (12%)

Query: 1   MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLV 60
           MQ + T++FSGGWR+RVSLARALF+EPTLL+LDEPTNHLDLNAVIWL+NYLQ W+KTLL+
Sbjct: 406 MQNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQGWRKTLLI 465

Query: 61  VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKS 120
           VSHDQ FL+++CTDIIHLD ++L YY+GN+  FKKMY QK+KEL K+YE QEK+++E+K+
Sbjct: 466 VSHDQGFLDDVCTDIIHLDAQRLHYYRGNYMTFKKMYQQKQKELLKQYEKQEKKLKELKA 525

Query: 121 QGMSKEKAERQHSHKALKEQ--ARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPP 178
            G S ++AE+Q      ++Q   R++ Q ++  E  ELL++P+EY V+F FP+PP L PP
Sbjct: 526 GGKSTKQAEKQTKEALTRKQQKCRRKNQDEESQEAPELLKRPKEYTVRFTFPDPPPLSPP 585

Query: 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
           VLGLH VTFGY G K L + ++FG+DM+SR+ +VGPNG+GKST L LL G+LTP  G   
Sbjct: 586 VLGLHGVTFGYEGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTHG--- 642

Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH 298
                                                   E+RK+ RL+IG F+Q   E 
Sbjct: 643 ----------------------------------------EMRKNHRLKIGFFNQQYAEQ 662

Query: 299 LFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356
           L  ++TP EYL + FNLPY+ +R+ LG FGL S+AHTI I  LSGGQKARV  AEL  
Sbjct: 663 LRMEETPTEYLQRGFNLPYQDARKCLGRFGLESHAHTIQICKLSGGQKARVVFAELAC 720

Required for efficient Cap- and IRES-mediated mRNA translation initiation. Not involved in the ribosome biogenesis.

Pan troglodytes (taxid: 9598)

>sp|Q8NE71|ABCF1_HUMAN ATP-binding cassette sub-family F member 1 OS=Homo sapiens GN=ABCF1 PE=1 SV=2

 Score =  332 bits (852), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 191/358 (53%), Positives = 248/358 (69%), Gaps = 45/358 (12%)

Query: 1   MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLV 60
           MQ + T++FSGGWR+RVSLARALF+EPTLL+LDEPTNHLDLNAVIWL+NYLQ W+KTLL+
Sbjct: 444 MQNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQGWRKTLLI 503

Query: 61  VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKS 120
           VSHDQ FL+++CTDIIHLD ++L YY+GN+  FKKMY QK+KEL K+YE QEK+++E+K+
Sbjct: 504 VSHDQGFLDDVCTDIIHLDAQRLHYYRGNYMTFKKMYQQKQKELLKQYEKQEKKLKELKA 563

Query: 121 QGMSKEKAERQHSHKALKEQ--ARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPP 178
            G S ++AE+Q      ++Q   R++ Q ++  E  ELL++P+EY V+F FP+PP L PP
Sbjct: 564 GGKSTKQAEKQTKEALTRKQQKCRRKNQDEESQEAPELLKRPKEYTVRFTFPDPPPLSPP 623

Query: 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
           VLGLH VTFGY G K L + ++FG+DM+SR+ +VGPNG+GKST L LL G+LTP  G   
Sbjct: 624 VLGLHGVTFGYQGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTHG--- 680

Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH 298
                                                   E+RK+ RL+IG F+Q   E 
Sbjct: 681 ----------------------------------------EMRKNHRLKIGFFNQQYAEQ 700

Query: 299 LFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356
           L  ++TP EYL + FNLPY+ +R+ LG FGL S+AHTI I  LSGGQKARV  AEL  
Sbjct: 701 LRMEETPTEYLQRGFNLPYQDARKCLGRFGLESHAHTIQICKLSGGQKARVVFAELAC 758

Isoform 2 is required for efficient Cap- and IRES-mediated mRNA translation initiation. Isoform 2 is not involved in the ribosome biogenesis.

Homo sapiens (taxid: 9606)

>sp|Q9M1H3|AB4F_ARATH ABC transporter F family member 4 OS=Arabidopsis thaliana GN=ABCF4 PE=2 SV=1

 Score =  291 bits (745), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 160/368 (43%), Positives = 219/368 (59%), Gaps = 56/368 (15%)

Query: 1   MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLV 60
           MQ ++T+ FSGGWR+R+SLARALF++PTLLLLDEPTNHLDL AV+WL+ YL  WKKTL+V
Sbjct: 312 MQVRATQSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVV 371

Query: 61  VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKS 120
           VSHD+ FLN +CT+IIHL  + L +Y+GNF  F+  Y Q+RKE+ K++++ +KQ++  K 
Sbjct: 372 VSHDRDFLNTVCTEIIHLHDQNLHFYRGNFDGFESGYEQRRKEMNKKFDVYDKQMKAAKR 431

Query: 121 QGM--SKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKP---REYIVKFRFPNPPYL 175
            G    +EK + +    A KE ++ + +    DE     E P   R+Y V F FP P  L
Sbjct: 432 TGNRGQQEKVKDRAKFTAAKEASKSKSKGKTVDEEGPAPEAPRKWRDYSVVFHFPEPTEL 491

Query: 176 PPPVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK 234
            PP+L L +V+F YP      L  V+ G+DM +RVA+VGPNG GKST LNLL G+L P  
Sbjct: 492 TPPLLQLIEVSFSYPNRPDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVP-- 549

Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQH 294
                                                     +GE+R+S +LRIG++ QH
Sbjct: 550 -----------------------------------------TEGEMRRSQKLRIGRYSQH 568

Query: 295 SGEHLFPDDTPCEYLMKL------FNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKAR 348
             + L   +TP +YL++L      F+   E  R +LG FGLPS+ H  PI  LSGGQKAR
Sbjct: 569 FVDLLTMGETPVQYLLRLHPDQEGFS-KQEAVRAKLGKFGLPSHNHLSPIAKLSGGQKAR 627

Query: 349 VALAELTL 356
           V    +++
Sbjct: 628 VVFTSISM 635

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H0V6|AB3F_ARATH ABC transporter F family member 3 OS=Arabidopsis thaliana GN=ABCF3 PE=2 SV=1

 Score =  249 bits (636), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 141/363 (38%), Positives = 195/363 (53%), Gaps = 63/363 (17%)

Query: 1   MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLV 60
           MQ K+T  FSGGWR+R++LARALF+EP LLLLDEPTNHLDL+AV+WL+ YL  W KT +V
Sbjct: 332 MQLKATNTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLTKWPKTFIV 391

Query: 61  VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKS 120
           VSH + FLN + TDIIHL  +KL  YKGN+ +F++   ++ K   K +E  E+    M++
Sbjct: 392 VSHAREFLNTVVTDIIHLQNQKLSTYKGNYDIFERTREEQVKNQQKAFESSERSRSHMQA 451

Query: 121 -----QGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYL 175
                +  +K  +  Q   KAL   A      +D D              KF FP P   
Sbjct: 452 FIDKFRYNAKRASLVQSRIKALDRLAHVDQVINDPD-------------YKFEFPTPDDK 498

Query: 176 P-PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK 234
           P PP++   D +FGYPGG +L   +NFG+D++SR+A+VGPNGIGKST L L+ G+L P+ 
Sbjct: 499 PGPPIISFSDASFGYPGGPLLFRNLNFGIDLDSRIAMVGPNGIGKSTILKLISGDLQPSS 558

Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQH 294
           G V                                            +S ++R+  F QH
Sbjct: 559 GTVF-------------------------------------------RSAKVRVAVFSQH 575

Query: 295 SGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAE 353
             + L     P  Y+M+ +  +P +K R  LG  G+       P+  LSGGQK+RVA A+
Sbjct: 576 HVDGLDLSSNPLLYMMRCYPGVPEQKLRSHLGSLGVTGNLALQPMYTLSGGQKSRVAFAK 635

Query: 354 LTL 356
           +T 
Sbjct: 636 ITF 638

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJH6|AB1F_ARATH ABC transporter F family member 1 OS=Arabidopsis thaliana GN=ABCF1 PE=1 SV=1

 Score =  242 bits (618), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 143/361 (39%), Positives = 197/361 (54%), Gaps = 58/361 (16%)

Query: 1   MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLV 60
           MQ K TK+FSGGWR+R++LARALF+ PT+LLLDEPTNHLDL A +WL+  L+ + + L+V
Sbjct: 205 MQAKKTKDFSGGWRMRIALARALFIMPTILLLDEPTNHLDLEACVWLEESLKNFDRILVV 264

Query: 61  VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKEL----TKEYELQEKQIR 116
           VSH Q FLN +CT+IIH+  K+L YY GNF      Y Q R EL     K+Y  +++QI 
Sbjct: 265 VSHSQDFLNGVCTNIIHMQSKQLKYYTGNF----DQYCQTRSELEENQMKQYRWEQEQIS 320

Query: 117 EMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEK-PREYIVKFRFPNPPYL 175
            MK     +  A   H    L  QA+ + +     E   L EK  R+ ++ FRF +   L
Sbjct: 321 HMK-----EYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVARDSVLVFRFADVGKL 375

Query: 176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 235
           PPPVL   +V+FGY    ++ + ++FG+D++SRVALVGPNG GKST L L+ GEL P +G
Sbjct: 376 PPPVLQFVEVSFGYTPDYLIYKNIDFGVDLDSRVALVGPNGAGKSTLLKLMTGELHPTEG 435

Query: 236 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHS 295
            V                                           R+   L+I ++ QH 
Sbjct: 436 MV-------------------------------------------RRHNHLKIAQYHQHL 452

Query: 296 GEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAEL 354
            E L  +     Y+M+ F     EK R  +G FGL   A  +P+++LS GQ++RV  A L
Sbjct: 453 AEKLDLELPALLYMMREFPGTEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVIFAWL 512

Query: 355 T 355
            
Sbjct: 513 A 513

Arabidopsis thaliana (taxid: 3702)

>sp|O42943|YBP8_SCHPO Uncharacterized ABC transporter ATP-binding protein C16H5.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC16H5.08c PE=1 SV=1

 Score =  232 bits (591), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 143/367 (38%), Positives = 194/367 (52%), Gaps = 62/367 (16%)

Query: 1   MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLV 60
           M  K TK+ SGGWR+RV+L+RALF++P+LLLLDEPTNHLDL AV+WL+NYL  + K L+V
Sbjct: 213 MMAKPTKDMSGGWRMRVALSRALFIKPSLLLLDEPTNHLDLEAVVWLENYLAKYDKILVV 272

Query: 61  VSHDQSFLNNICTDIIHLDMKK-LFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMK 119
            SH Q FLNN+CT+II L  KK L YY GNF ++ +   +      K Y  Q+++I  +K
Sbjct: 273 TSHSQDFLNNVCTNIIDLTSKKQLVYYGGNFDIYMRTKEENETNQMKAYLKQQEEIAHIK 332

Query: 120 SQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEK---PREYIVKFRFPNPPYLP 176
               S        ++  L  QA+ + +  D  E   L+EK   PR++   F F     LP
Sbjct: 333 KFIAS------AGTYANLVRQAKSKQKIIDKMEAAGLVEKPEPPRQF--SFEFDEVRKLP 384

Query: 177 PPVLGLHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK 234
           PP++  +DV F Y G     L   ++FG+DM+SRVA+VG NG GKST LNL+ G L P +
Sbjct: 385 PPIIAFNDVAFSYDGNLDHALYRDLSFGIDMDSRVAIVGKNGTGKSTLLNLITGLLIPIE 444

Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQH 294
           G V            SR +                                L++ K+ QH
Sbjct: 445 GNV------------SRYS-------------------------------GLKMAKYSQH 461

Query: 295 SGEHLFPDDTPCEYLMKLFNLPY-----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARV 349
           S + L  D +P EY+M  +   +     ++ R  LG FGL     T  IR LS G K+RV
Sbjct: 462 SADQLPYDKSPLEYIMDTYKPKFPERELQQWRSVLGKFGLSGLHQTSEIRTLSDGLKSRV 521

Query: 350 ALAELTL 356
             A L L
Sbjct: 522 VFAALAL 528

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8T6B4|ABCF4_DICDI ABC transporter F family member 4 OS=Dictyostelium discoideum GN=abcF4 PE=3 SV=1

 Score =  222 bits (565), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 131/353 (37%), Positives = 196/353 (55%), Gaps = 53/353 (15%)

Query: 4    KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSH 63
            K ++++SGGWR+R++LARALF +P +LLLDEP+NHLDL+A +WL+ YL  W +TLLVVSH
Sbjct: 756  KKSRDYSGGWRMRIALARALFCKPEVLLLDEPSNHLDLHACVWLEKYLNQWDRTLLVVSH 815

Query: 64   DQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGM 123
            + SFLN +  +II++  +KL  Y+GN+  F K      +   KE + Q++++++M ++ +
Sbjct: 816  EASFLNEVVDNIIYIHDQKLDQYRGNYDAFMKQKSVNLRSKEKEKDKQDRKLKKM-NEFI 874

Query: 124  SKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLGLH 183
            +K K   Q       +QA  R +K +  E  EL  +    +V   FP P +L PP+L   
Sbjct: 875  TKNKNNTQ------AKQAASRAKKMEKIETIELEREDASLVVD--FPQPEHLTPPLLVFK 926

Query: 184  DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN 243
            DV FGY G   + +K++ G+DM+S++ALVG NG+GKST + L+ G+L             
Sbjct: 927  DVCFGYEGRPTMFKKLDIGIDMDSKIALVGMNGVGKSTLMKLMNGDLH------------ 974

Query: 244  FGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDD 303
                                        E T   G + +S ++R+ +F QH  + L    
Sbjct: 975  ----------------------------ETT---GYIERSRKMRVARFSQHFVDQLDTTM 1003

Query: 304  TPCEYLMKLF-NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT 355
            TP EY    F N P ++ R  LG FG+ +      I  LSGGQK+RV LAEL 
Sbjct: 1004 TPIEYFQSKFNNPPVQQIRNHLGRFGICNSLPLHKITTLSGGQKSRVILAELA 1056

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	356
195394095	914	GJ18654 [Drosophila virilis] gi|19415019	0.879	0.342	0.579	1e-117
321462792	936	ABC protein, subfamily ABCF [Daphnia pul	0.879	0.334	0.616	1e-117
195048050	929	GH24766 [Drosophila grimshawi] gi|193893	0.879	0.336	0.582	1e-116
194889495	916	GG18434 [Drosophila erecta] gi|190648746	0.879	0.341	0.582	1e-116
195131517	904	GI15800 [Drosophila mojavensis] gi|19390	0.879	0.346	0.579	1e-116
195355244	902	GM13097 [Drosophila sechellia] gi|194129	0.879	0.347	0.579	1e-116
24641342	901	CG1703 [Drosophila melanogaster] gi|7292	0.879	0.347	0.579	1e-115
194767886	911	GF19482 [Drosophila ananassae] gi|190622	0.879	0.343	0.576	1e-115
195480797	907	GE15656 [Drosophila yakuba] gi|194188920	0.879	0.345	0.579	1e-115
125983764	924	GA14282 [Drosophila pseudoobscura pseudo	0.879	0.338	0.578	1e-115

>gi|195394095|ref|XP_002055681.1| GJ18654 [Drosophila virilis] gi|194150191|gb|EDW65882.1| GJ18654 [Drosophila virilis]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 208/359 (57%), Positives = 264/359 (73%), Gaps = 46/359 (12%)

Query: 1   MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLV 60
           MQ++ T +FSGGWR+RVSLARAL+LEPTLL+LDEPTNHLDLNAVIWLDNYLQ WKKTLL+
Sbjct: 505 MQDRPTNKFSGGWRMRVSLARALYLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLI 564

Query: 61  VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKS 120
           VSHDQSFL+N+C +IIHLD KKLFYYKGN+++FKKMYVQKR+E+ KEYE QEK++RE+K+
Sbjct: 565 VSHDQSFLDNVCNEIIHLDQKKLFYYKGNYSMFKKMYVQKRREMIKEYEKQEKRLRELKA 624

Query: 121 QGMSKEKAERQHSHKALKEQARKRV---QKDDDDEPKELLEKPREYIVKFRFPNPPYLPP 177
            G SK+ AE++      ++Q + +    ++++DD P+ELL +P+EYIVKFRFP P  L P
Sbjct: 625 HGQSKKAAEKKQKESLTRKQEKNKTKTQKQEEDDGPQELLARPKEYIVKFRFPEPSQLQP 684

Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
           P+LG+H+VTF +PG K L  K +FG+D+ SRVA+VGPNG+GKSTFL LL GEL P     
Sbjct: 685 PILGVHNVTFAFPGQKPLFVKADFGIDLTSRVAIVGPNGVGKSTFLKLLLGELEP----- 739

Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGE 297
                                                  +GE RK+ RL +G+FDQHSGE
Sbjct: 740 --------------------------------------QEGEQRKNHRLHVGRFDQHSGE 761

Query: 298 HLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356
           HL  +++  EYL +LFNLP+EK+R+ LG FGL S+AHTI ++DLSGGQKARVALAEL L
Sbjct: 762 HLTAEESAAEYLQRLFNLPHEKARKALGSFGLVSHAHTIKMKDLSGGQKARVALAELCL 820

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321462792|gb|EFX73813.1| ABC protein, subfamily ABCF [Daphnia pulex]

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/360 (61%), Positives = 269/360 (74%), Gaps = 47/360 (13%)

Query: 1   MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLV 60
           MQ + TK FSGGWR+RVSL RAL+LEPTLL+LDEPTNHLDLNAVIWLDNYLQ WKKTLL+
Sbjct: 525 MQNRPTKNFSGGWRMRVSLGRALYLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLI 584

Query: 61  VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKS 120
           VSHDQSFL+N+CTDIIHLDM+KLFYYKGN+++FKKM++QKRKE  K+YE QEK+++E+KS
Sbjct: 585 VSHDQSFLDNVCTDIIHLDMEKLFYYKGNYSMFKKMHLQKRKEQIKDYEKQEKRLKELKS 644

Query: 121 QGMSKEKAERQHSHKALKEQARKR--VQKDDDDE--PKELLEKPREYIVKFRFPNPPYLP 176
           QG SK+ AE++      K+Q + R  +QK++DD   P EL+++PREYIVKFRFP PP L 
Sbjct: 645 QGQSKKAAEKKQKEALTKKQEKNRAKLQKNEDDSTGPVELMQRPREYIVKFRFPEPPPLQ 704

Query: 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGK 236
           PPVLG+H+VTFGY   + L +  +FG+DMESRVA+VGPNG+GKSTFL LL GEL+P    
Sbjct: 705 PPVLGIHNVTFGYDAHRPLFKTCDFGIDMESRVAIVGPNGVGKSTFLKLLVGELSP---- 760

Query: 237 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSG 296
                                                   +GE RK+ RLRIG+FDQHSG
Sbjct: 761 ---------------------------------------QQGEQRKNHRLRIGRFDQHSG 781

Query: 297 EHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356
           EHL  ++TP EYLM+LFNLPYEK+R+QLG FGL S+AHTI   DLSGGQKARVALAEL L
Sbjct: 782 EHLTAEETPAEYLMRLFNLPYEKARKQLGSFGLASHAHTIKNMDLSGGQKARVALAELCL 841

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195048050|ref|XP_001992461.1| GH24766 [Drosophila grimshawi] gi|193893302|gb|EDV92168.1| GH24766 [Drosophila grimshawi]

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 209/359 (58%), Positives = 263/359 (73%), Gaps = 46/359 (12%)

Query: 1   MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLV 60
           MQ++ T +FSGGWR+RVSLARAL+LEPTLL+LDEPTNHLDLNAVIWLDNYLQ WKKTLL+
Sbjct: 520 MQDRPTNKFSGGWRMRVSLARALYLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLI 579

Query: 61  VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKS 120
           VSHDQSFL+N+C +IIHLD KKL YYKGN+++FKKMYVQKR+E+ KEYE QEK+IRE+K+
Sbjct: 580 VSHDQSFLDNVCNEIIHLDQKKLHYYKGNYSMFKKMYVQKRREMIKEYEKQEKRIRELKA 639

Query: 121 QGMSKEKAERQHSHKALKEQAR---KRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPP 177
            G SK+ AE++      ++Q +   K+ ++D+DD P+ELL +P+EYIVKFRFP P  L P
Sbjct: 640 HGQSKKAAEKKQKETLTRKQEKNKSKQQKQDEDDGPQELLARPKEYIVKFRFPEPSQLQP 699

Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
           P+LG+H+VTF + G K L  K +FG+D+ SRVA+VGPNG+GKSTFL LL GEL P     
Sbjct: 700 PILGVHNVTFAFDGQKPLFIKTDFGIDLTSRVAIVGPNGVGKSTFLKLLLGELQP----- 754

Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGE 297
                                                  +GE RK+ RL +G+FDQHSGE
Sbjct: 755 --------------------------------------QQGEQRKNHRLHVGRFDQHSGE 776

Query: 298 HLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356
           HL  +++  EYL +LFNLP+EK+R+ LG FGL S+AHTI ++DLSGGQKARVALAEL L
Sbjct: 777 HLTAEESAAEYLQRLFNLPHEKARKALGSFGLVSHAHTIKMKDLSGGQKARVALAELCL 835

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194889495|ref|XP_001977097.1| GG18434 [Drosophila erecta] gi|190648746|gb|EDV46024.1| GG18434 [Drosophila erecta]

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 209/359 (58%), Positives = 263/359 (73%), Gaps = 46/359 (12%)

Query: 1   MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLV 60
           MQ++ T +FSGGWR+RVSLARAL+LEPTLL+LDEPTNHLDLNAVIWLDNYLQ WKKTLL+
Sbjct: 507 MQDRPTNKFSGGWRMRVSLARALYLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLI 566

Query: 61  VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKS 120
           VSHDQSFL+N+C +IIHLD KKL YYKGN+++FKKMYVQKR+E+ KEYE QEK++RE+K+
Sbjct: 567 VSHDQSFLDNVCNEIIHLDQKKLQYYKGNYSMFKKMYVQKRREMIKEYEKQEKRLRELKA 626

Query: 121 QGMSKEKAERQHSHKALKEQARKRVQK---DDDDEPKELLEKPREYIVKFRFPNPPYLPP 177
            G SK+ AE++      ++Q + + ++   DDDD P+ELL +P+EYIVKFRFP P  L P
Sbjct: 627 HGQSKKAAEKKQKESLTRKQEKNKSKQQKLDDDDGPQELLARPKEYIVKFRFPEPSQLQP 686

Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
           P+LG+H+VTF +P  K L  KV+FG+D+ SRVA+VGPNG+GKSTFL LL GEL P     
Sbjct: 687 PILGIHNVTFAFPPQKPLFIKVDFGIDLTSRVAIVGPNGVGKSTFLKLLLGELEP----- 741

Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGE 297
                                                  +GE RK+ RL +G+FDQHSGE
Sbjct: 742 --------------------------------------QEGEQRKNHRLHVGRFDQHSGE 763

Query: 298 HLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356
           HL  +++  EYL +LFNLP+EK+R+ LG FGL S+AHTI ++DLSGGQKARVALAEL L
Sbjct: 764 HLTAEESAAEYLERLFNLPHEKARKALGSFGLVSHAHTIKMKDLSGGQKARVALAELCL 822

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195131517|ref|XP_002010197.1| GI15800 [Drosophila mojavensis] gi|193908647|gb|EDW07514.1| GI15800 [Drosophila mojavensis]

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 208/359 (57%), Positives = 263/359 (73%), Gaps = 46/359 (12%)

Query: 1   MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLV 60
           MQ++ T +FSGGWR+RVSLARAL+LEPTLL+LDEPTNHLDLNAVIWLDNYLQ WKKTLL+
Sbjct: 495 MQDRPTNKFSGGWRMRVSLARALYLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLI 554

Query: 61  VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKS 120
           VSHDQSFL+N+C +IIHLD KKL YYKGN+++FKKMYVQKR+E+ KEYE QEK++RE+K+
Sbjct: 555 VSHDQSFLDNVCNEIIHLDQKKLHYYKGNYSMFKKMYVQKRREMIKEYEKQEKRLRELKA 614

Query: 121 QGMSKEKAERQHSHKALKEQAR---KRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPP 177
            G SK+ AE++      ++Q +   K+ ++++DD P+ELL +P+EYIVKFRFP P  L P
Sbjct: 615 HGQSKKAAEKKQKESLTRKQEKNKSKQQKQEEDDGPQELLARPKEYIVKFRFPEPSQLQP 674

Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
           P+LG+H+VTF Y G K L  K +FG+D+ SRVA+VGPNG+GKSTFL LL GEL P     
Sbjct: 675 PILGVHNVTFAYEGQKPLFVKADFGIDLTSRVAIVGPNGVGKSTFLKLLLGELEP----- 729

Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGE 297
                                                  +GE RK+ RL +G+FDQHSGE
Sbjct: 730 --------------------------------------QEGEQRKNHRLHVGRFDQHSGE 751

Query: 298 HLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356
           HL  +++  EYL +LFNLP+EK+R+ LG FGL S+AHTI ++DLSGGQKARVALAEL L
Sbjct: 752 HLTAEESAAEYLQRLFNLPHEKARKALGSFGLVSHAHTIKMKDLSGGQKARVALAELCL 810

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195355244|ref|XP_002044102.1| GM13097 [Drosophila sechellia] gi|194129371|gb|EDW51414.1| GM13097 [Drosophila sechellia]

 Score =  422 bits (1086), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 208/359 (57%), Positives = 264/359 (73%), Gaps = 46/359 (12%)

Query: 1   MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLV 60
           MQ++ T +FSGGWR+RVSLARAL+LEPTLL+LDEPTNHLDLNAVIWLDNYLQ WKKTLL+
Sbjct: 493 MQDRPTNKFSGGWRMRVSLARALYLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLI 552

Query: 61  VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKS 120
           VSHDQSFL+N+C +IIHLD KKL YYKGN+++FKKMYVQKR+E+ KEYE QEK++RE+K+
Sbjct: 553 VSHDQSFLDNVCNEIIHLDQKKLQYYKGNYSMFKKMYVQKRREMIKEYEKQEKRLRELKA 612

Query: 121 QGMSKEKAERQHSHKALKEQAR---KRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPP 177
            G SK+ AE++      ++Q +   K+ ++D+D+ P+ELL +P+EYIVKFRFP P  L P
Sbjct: 613 HGQSKKAAEKKQKESLTRKQEKNKSKQQKQDEDEGPQELLARPKEYIVKFRFPEPSQLQP 672

Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
           P+LG+H+VTF +P  K L  KV+FG+D+ SRVA+VGPNG+GKSTFL LL GEL P     
Sbjct: 673 PILGVHNVTFAFPSQKPLFIKVDFGIDLTSRVAIVGPNGVGKSTFLKLLLGELEP----- 727

Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGE 297
                                                  +GE RK+ RL +G+FDQHSGE
Sbjct: 728 --------------------------------------QEGEQRKNHRLHVGRFDQHSGE 749

Query: 298 HLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356
           HL  +++  EYL +LFNLP+EK+R+ LG FGL S+AHTI ++DLSGGQKARVALAEL L
Sbjct: 750 HLTAEESAAEYLQRLFNLPHEKARKALGSFGLVSHAHTIKMKDLSGGQKARVALAELCL 808

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24641342|ref|NP_572736.1| CG1703 [Drosophila melanogaster] gi|7292671|gb|AAF48069.1| CG1703 [Drosophila melanogaster] gi|60678119|gb|AAX33566.1| LD04461p [Drosophila melanogaster] gi|220950440|gb|ACL87763.1| CG1703-PA [synthetic construct]

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/359 (57%), Positives = 264/359 (73%), Gaps = 46/359 (12%)

Query: 1   MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLV 60
           MQ++ T +FSGGWR+RVSLARAL+LEPTLL+LDEPTNHLDLNAVIWLDNYLQ WKKTLL+
Sbjct: 492 MQDRPTNKFSGGWRMRVSLARALYLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLI 551

Query: 61  VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKS 120
           VSHDQSFL+N+C +IIHLD KKL YYKGN+++FKKMYVQKR+E+ KEYE QEK++RE+K+
Sbjct: 552 VSHDQSFLDNVCNEIIHLDQKKLQYYKGNYSMFKKMYVQKRREMIKEYEKQEKRLRELKA 611

Query: 121 QGMSKEKAERQHSHKALKEQAR---KRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPP 177
            G SK+ AE++      ++Q +   K+ ++D+D+ P+ELL +P+EYIVKFRFP P  L P
Sbjct: 612 HGQSKKAAEKKQKESLTRKQEKNKSKQQKQDEDEGPQELLARPKEYIVKFRFPEPSQLQP 671

Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
           P+LG+H+VTF +P  K L  KV+FG+D+ SRVA+VGPNG+GKSTFL LL GEL P     
Sbjct: 672 PILGVHNVTFAFPSQKPLFIKVDFGIDLTSRVAIVGPNGVGKSTFLKLLLGELEP----- 726

Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGE 297
                                                  +GE RK+ RL +G+FDQHSGE
Sbjct: 727 --------------------------------------QEGEQRKNHRLHVGRFDQHSGE 748

Query: 298 HLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356
           HL  +++  EYL +LFNLP+EK+R+ LG FGL S+AHTI ++DLSGGQKARVALAEL L
Sbjct: 749 HLTAEESAAEYLQRLFNLPHEKARKALGSFGLVSHAHTIKMKDLSGGQKARVALAELCL 807

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194767886|ref|XP_001966045.1| GF19482 [Drosophila ananassae] gi|190622930|gb|EDV38454.1| GF19482 [Drosophila ananassae]

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 207/359 (57%), Positives = 263/359 (73%), Gaps = 46/359 (12%)

Query: 1   MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLV 60
           MQ++ T +FSGGWR+RVSLARAL+LEPTLL+LDEPTNHLDLNAVIWLDNYLQ WKKTLL+
Sbjct: 502 MQDRPTNKFSGGWRMRVSLARALYLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLI 561

Query: 61  VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKS 120
           VSHDQSFL+N+C +IIHLD KKL YYKGN+++FKKMYVQKR+E+ KEYE QEK++RE+K+
Sbjct: 562 VSHDQSFLDNVCNEIIHLDQKKLQYYKGNYSMFKKMYVQKRREMIKEYEKQEKRLRELKA 621

Query: 121 QGMSKEKAERQHSHKALKEQAR---KRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPP 177
            G SK+ AE++      ++Q +   K+ ++D+D+ P+ELL +P+EYIVKFRFP P  L P
Sbjct: 622 HGQSKKAAEKKQKESLTRKQEKNKSKQQKQDEDEGPQELLARPKEYIVKFRFPEPSQLQP 681

Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
           P+LG+H+VTF +P  K L  K +FG+D+ SRVA+VGPNG+GKSTFL LL GEL P     
Sbjct: 682 PILGVHNVTFAFPNQKPLFIKADFGIDLTSRVAIVGPNGVGKSTFLKLLLGELEP----- 736

Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGE 297
                                                  +GE RK+ RL +G+FDQHSGE
Sbjct: 737 --------------------------------------QEGEQRKNHRLHVGRFDQHSGE 758

Query: 298 HLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356
           HL  +++  EYL +LFNLP+EK+R+ LG FGL S+AHTI ++DLSGGQKARVALAEL L
Sbjct: 759 HLTAEESAAEYLQRLFNLPHEKARKALGSFGLVSHAHTIKMKDLSGGQKARVALAELCL 817

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195480797|ref|XP_002101396.1| GE15656 [Drosophila yakuba] gi|194188920|gb|EDX02504.1| GE15656 [Drosophila yakuba]

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/359 (57%), Positives = 264/359 (73%), Gaps = 46/359 (12%)

Query: 1   MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLV 60
           MQ++ T +FSGGWR+RVSLARAL+LEPTLL+LDEPTNHLDLNAVIWLDNYLQ WKKTLL+
Sbjct: 498 MQDRPTNKFSGGWRMRVSLARALYLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLI 557

Query: 61  VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKS 120
           VSHDQSFL+N+C +IIHLD KKL YYKGN+++FKKMYVQKR+E+ KEYE QEK++RE+K+
Sbjct: 558 VSHDQSFLDNVCNEIIHLDQKKLQYYKGNYSMFKKMYVQKRREMIKEYEKQEKRLRELKA 617

Query: 121 QGMSKEKAERQHSHKALKEQAR---KRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPP 177
            G SK+ AE++      ++Q +   K+ ++D+D+ P+ELL +P+EYIVKFRFP P  L P
Sbjct: 618 HGQSKKAAEKKQKESLTRKQEKNKSKQQKQDEDEGPQELLARPKEYIVKFRFPEPSQLQP 677

Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
           P+LG+H+VTF +P  K L  KV+FG+D+ SRVA+VGPNG+GKSTFL LL GEL P     
Sbjct: 678 PILGIHNVTFAFPPQKPLFIKVDFGIDLTSRVAIVGPNGVGKSTFLKLLLGELEP----- 732

Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGE 297
                                                  +GE RK+ RL +G+FDQHSGE
Sbjct: 733 --------------------------------------QEGEQRKNHRLHVGRFDQHSGE 754

Query: 298 HLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356
           HL  +++  EYL +LFNLP+EK+R+ LG FGL S+AHTI ++DLSGGQKARVALAEL L
Sbjct: 755 HLTAEESAAEYLQRLFNLPHEKARKALGSFGLVSHAHTIKMKDLSGGQKARVALAELCL 813

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125983764|ref|XP_001355647.1| GA14282 [Drosophila pseudoobscura pseudoobscura] gi|54643963|gb|EAL32706.1| GA14282 [Drosophila pseudoobscura pseudoobscura]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 207/358 (57%), Positives = 262/358 (73%), Gaps = 45/358 (12%)

Query: 1   MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLV 60
           MQ++ T +FSGGWR+RVSLARAL+LEPTLL+LDEPTNHLDLNAVIWLDNYLQ WKKTLL+
Sbjct: 516 MQDRPTNKFSGGWRMRVSLARALYLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLI 575

Query: 61  VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKS 120
           VSHDQSFL+N+C +IIHLD KKL YYKGN+++FKKMYVQKR+E+ KEYE QEK++RE+K+
Sbjct: 576 VSHDQSFLDNVCNEIIHLDQKKLQYYKGNYSMFKKMYVQKRREMIKEYEKQEKRLRELKA 635

Query: 121 QGMSKEKAERQHSHKALKEQARKRV--QKDDDDEPKELLEKPREYIVKFRFPNPPYLPPP 178
            G SK+ AE++      ++Q + +   QKD+D+ P+ELL +P+EYIVKFRFP P  L PP
Sbjct: 636 HGQSKKAAEKKQKETLTRKQEKNKTKQQKDEDEGPQELLARPKEYIVKFRFPEPSQLQPP 695

Query: 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
           +LG+H++TF + G K L  K +FG+D+ SRVA+VGPNG+GKSTFL LL GEL P      
Sbjct: 696 ILGVHNITFAFAGHKPLFIKADFGIDLTSRVAIVGPNGVGKSTFLKLLLGELEP------ 749

Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH 298
                                                 +GE RK+ RL +G+FDQHSGEH
Sbjct: 750 -------------------------------------QQGEQRKNHRLHVGRFDQHSGEH 772

Query: 299 LFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356
           L  +++  EYL +LFNLP+EK+R+ LG FGL S+AHTI ++DLSGGQKARVALAEL L
Sbjct: 773 LTAEESAAEYLQRLFNLPHEKARKALGSFGLVSHAHTIKMKDLSGGQKARVALAELCL 830

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	356
FB|FBgn0030321	901	CG1703 [Drosophila melanogaste	0.662	0.261	0.535	2e-65
ZFIN|ZDB-GENE-050517-31	877	abcf1 "ATP-binding cassette, s	0.665	0.270	0.510	4.2e-63
UNIPROTKB|E1BGH0	845	ABCF1 "Uncharacterized protein	0.665	0.280	0.497	1.2e-60
UNIPROTKB|Q767L0	807	ABCF1 "ATP-binding cassette su	0.665	0.293	0.497	1.2e-60
UNIPROTKB|K7GL02	842	ABCF1 "ATP-binding cassette, s	0.665	0.281	0.497	1.2e-60
RGD|620286	839	Abcf1 "ATP-binding cassette, s	0.665	0.282	0.502	1.9e-60
UNIPROTKB|Q6MG08	839	Abcf1 "ATP-binding cassette su	0.665	0.282	0.502	1.9e-60
UNIPROTKB|Q8NE71	845	ABCF1 "ATP-binding cassette su	0.665	0.280	0.497	2.4e-60
UNIPROTKB|Q7YR37	807	ABCF1 "ATP-binding cassette su	0.665	0.293	0.497	2.4e-60
UNIPROTKB|H0YGW7	596	ABCF1 "ATP-binding cassette su	0.665	0.397	0.497	2.4e-60

FB|FBgn0030321 CG1703 [Drosophila melanogaster (taxid:7227)]

 Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
 Identities = 128/239 (53%), Positives = 165/239 (69%)

Query:     1 MQEKSTKEFSGGWRIRVSXXXXXXXXXXXXXXXXXXNHLDLNAVIWLDNYLQTWKKTLLV 60
             MQ++ T +FSGGWR+RVS                  NHLDLNAVIWLDNYLQ WKKTLL+
Sbjct:   492 MQDRPTNKFSGGWRMRVSLARALYLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLI 551

Query:    61 VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKS 120
             VSHDQSFL+N+C +IIHLD KKL YYKGN+++FKKMYVQKR+E+ KEYE QEK++RE+K+
Sbjct:   552 VSHDQSFLDNVCNEIIHLDQKKLQYYKGNYSMFKKMYVQKRREMIKEYEKQEKRLRELKA 611

Query:   121 QGMSKEKAERQHSHKALKEQAR---KRVQXXXXXXXXXXXXXXREYIVKFRFXXXXXXXX 177
              G SK+ AE++      ++Q +   K+ +              +EYIVKFRF        
Sbjct:   612 HGQSKKAAEKKQKESLTRKQEKNKSKQQKQDEDEGPQELLARPKEYIVKFRFPEPSQLQP 671

Query:   178 XVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGK 236
              +LG+H+VTF +P  K L  KV+FG+D+ SRVA+VGPNG+GKSTFL LL GEL P +G+
Sbjct:   672 PILGVHNVTFAFPSQKPLFIKVDFGIDLTSRVAIVGPNGVGKSTFLKLLLGELEPQEGE 730

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0005215 "transporter activity" evidence=ISS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

ZFIN|ZDB-GENE-050517-31 abcf1 "ATP-binding cassette, sub-family F (GCN20), member 1" [Danio rerio (taxid:7955)]

 Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
 Identities = 122/239 (51%), Positives = 163/239 (68%)

Query:     1 MQEKSTKEFSGGWRIRVSXXXXXXXXXXXXXXXXXXNHLDLNAVIWLDNYLQTWKKTLLV 60
             MQ + TK+FSGGWR+RVS                  NHLDLNAVIWL+NYLQ+WKKTLL+
Sbjct:   476 MQNRPTKKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQSWKKTLLI 535

Query:    61 VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKS 120
             VSHDQSFL+++CTDIIHLD +KL+YY+GN+  FKKMY+QK+KEL K+Y+ QEK+++++K+
Sbjct:   536 VSHDQSFLDDVCTDIIHLDNQKLYYYRGNYLTFKKMYIQKQKELQKQYDKQEKKLKDLKA 595

Query:   121 QGMSKEKAERQHSHKALKEQ--ARKRVQXXXXXXXXXXXXXXREYIVKFRFXXXXXXXXX 178
              G S ++AE+Q      ++Q   +K+ Q              +EY VKF F         
Sbjct:   596 GGKSTKQAEKQTKEALTRKQQKGKKKSQEEESHEATELLKRPKEYTVKFTFPNPPPLSPP 655

Query:   179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
             +LGLH V FGY G K L + V+FG+DMESR+ +VGPNG+GKST L LL G+L P KG++
Sbjct:   656 ILGLHSVDFGYEGQKPLFKNVDFGIDMESRICIVGPNGVGKSTLLLLLTGKLNPTKGEM 714

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|E1BGH0 ABCF1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 119/239 (49%), Positives = 161/239 (67%)

Query:     1 MQEKSTKEFSGGWRIRVSXXXXXXXXXXXXXXXXXXNHLDLNAVIWLDNYLQTWKKTLLV 60
             MQ + T++FSGGWR+RVS                  NHLDLNAVIWL+NYLQ W+KTLL+
Sbjct:   444 MQNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQGWRKTLLI 503

Query:    61 VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKS 120
             VSHDQ FL+++CTDIIHLD ++L YY+GN+  FKKMY QK+KEL K+YE QEK+++E+K+
Sbjct:   504 VSHDQGFLDDVCTDIIHLDAQRLHYYRGNYMTFKKMYQQKQKELLKQYEKQEKKLKELKA 563

Query:   121 QGMSKEKAERQHSHKALKEQ--ARKRVQXXXXXXXXXXXXXXREYIVKFRFXXXXXXXXX 178
              G S ++AE+Q      ++Q   R++ Q              +EY V+F F         
Sbjct:   564 GGKSTKQAEKQTKEALTRKQQKCRRKNQDEESQEAPELLKRPKEYTVRFTFPDPPPLSPP 623

Query:   179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
             VLGLH VTFGY G K L + ++FG+DM+SR+ +VGPNG+GKST L LL G+LTP +G++
Sbjct:   624 VLGLHGVTFGYEGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTRGEM 682

GO:0043022 "ribosome binding" evidence=IEA

GO:0042788 "polysomal ribosome" evidence=IEA

GO:0008494 "translation activator activity" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|Q767L0 ABCF1 "ATP-binding cassette sub-family F member 1" [Sus scrofa (taxid:9823)]

 Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 119/239 (49%), Positives = 161/239 (67%)

Query:     1 MQEKSTKEFSGGWRIRVSXXXXXXXXXXXXXXXXXXNHLDLNAVIWLDNYLQTWKKTLLV 60
             MQ + T++FSGGWR+RVS                  NHLDLNAVIWL+NYLQ W+KTLL+
Sbjct:   406 MQNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQGWRKTLLI 465

Query:    61 VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKS 120
             VSHDQ FL+++CTDIIHLD ++L YY+GN+  FKKMY QK+KEL K+YE QEK+++E+K+
Sbjct:   466 VSHDQGFLDDVCTDIIHLDAQRLHYYRGNYMTFKKMYQQKQKELLKQYEKQEKKLKELKA 525

Query:   121 QGMSKEKAERQHSHKALKEQ--ARKRVQXXXXXXXXXXXXXXREYIVKFRFXXXXXXXXX 178
              G S ++AE+Q      ++Q   R++ Q              +EY V+F F         
Sbjct:   526 GGKSTKQAEKQTKEALTRKQQKCRRKNQDEESQEAPELLKRPKEYTVRFTFPDPPPLSPP 585

Query:   179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
             VLGLH VTFGY G K L + ++FG+DM+SR+ +VGPNG+GKST L LL G+LTP +G++
Sbjct:   586 VLGLHGVTFGYEGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTRGEM 644

GO:0005737 "cytoplasm" evidence=ISS

GO:0042788 "polysomal ribosome" evidence=ISS

GO:0005654 "nucleoplasm" evidence=ISS

GO:0005635 "nuclear envelope" evidence=ISS

GO:0043022 "ribosome binding" evidence=ISS

GO:0008494 "translation activator activity" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

GO:0045727 "positive regulation of translation" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|K7GL02 ABCF1 "ATP-binding cassette, sub-family F (GCN20), member 1" [Sus scrofa (taxid:9823)]

 Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 119/239 (49%), Positives = 161/239 (67%)

Query:     1 MQEKSTKEFSGGWRIRVSXXXXXXXXXXXXXXXXXXNHLDLNAVIWLDNYLQTWKKTLLV 60
             MQ + T++FSGGWR+RVS                  NHLDLNAVIWL+NYLQ W+KTLL+
Sbjct:   441 MQNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQGWRKTLLI 500

Query:    61 VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKS 120
             VSHDQ FL+++CTDIIHLD ++L YY+GN+  FKKMY QK+KEL K+YE QEK+++E+K+
Sbjct:   501 VSHDQGFLDDVCTDIIHLDAQRLHYYRGNYMTFKKMYQQKQKELLKQYEKQEKKLKELKA 560

Query:   121 QGMSKEKAERQHSHKALKEQ--ARKRVQXXXXXXXXXXXXXXREYIVKFRFXXXXXXXXX 178
              G S ++AE+Q      ++Q   R++ Q              +EY V+F F         
Sbjct:   561 GGKSTKQAEKQTKEALTRKQQKCRRKNQDEESQEAPELLKRPKEYTVRFTFPDPPPLSPP 620

Query:   179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
             VLGLH VTFGY G K L + ++FG+DM+SR+ +VGPNG+GKST L LL G+LTP +G++
Sbjct:   621 VLGLHGVTFGYEGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTRGEM 679

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

RGD|620286 Abcf1 "ATP-binding cassette, subfamily F (GCN20), member 1" [Rattus norvegicus (taxid:10116)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 120/239 (50%), Positives = 160/239 (66%)

Query:     1 MQEKSTKEFSGGWRIRVSXXXXXXXXXXXXXXXXXXNHLDLNAVIWLDNYLQTWKKTLLV 60
             MQ + T++FSGGWR+RVS                  NHLDLNAVIWL+NYLQ W+KTLL+
Sbjct:   438 MQNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQGWRKTLLI 497

Query:    61 VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKS 120
             VSHDQ FL+++CTDIIHLD ++L YY+GN+  FKKMY QK+KEL K+YE QEK+++E+K+
Sbjct:   498 VSHDQGFLDDVCTDIIHLDTQRLHYYRGNYMTFKKMYQQKQKELLKQYEKQEKKLKELKA 557

Query:   121 QGMSKEKAERQHSHKALKEQ--ARKRVQXXXXXXXXXXXXXXREYIVKFRFXXXXXXXXX 178
              G S ++AE+Q      ++Q   R++ Q              REY V+F F         
Sbjct:   558 GGKSTKQAEKQTKEVLTRKQQKCRRKNQDEESQDPPELLKRPREYTVRFTFPDPPPLSPP 617

Query:   179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
             VLGLH VTFGY G K L + ++FG+DM+SR+ +VGPNG+GKST L LL G+LTP  G++
Sbjct:   618 VLGLHGVTFGYEGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTNGEM 676

GO:0005524 "ATP binding" evidence=IEA;ISO;ISS

GO:0005635 "nuclear envelope" evidence=ISO;ISS

GO:0005654 "nucleoplasm" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO

GO:0005840 "ribosome" evidence=IDA

GO:0006412 "translation" evidence=NAS

GO:0006413 "translational initiation" evidence=IEA;ISO;ISS

GO:0008494 "translation activator activity" evidence=IEA;ISO;ISS

GO:0016887 "ATPase activity" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=ISO;ISS

GO:0042788 "polysomal ribosome" evidence=IEA;ISO;ISS

GO:0043022 "ribosome binding" evidence=IEA;ISO;ISS

GO:0045727 "positive regulation of translation" evidence=ISO;ISS

UNIPROTKB|Q6MG08 Abcf1 "ATP-binding cassette sub-family F member 1" [Rattus norvegicus (taxid:10116)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 120/239 (50%), Positives = 160/239 (66%)

Query:     1 MQEKSTKEFSGGWRIRVSXXXXXXXXXXXXXXXXXXNHLDLNAVIWLDNYLQTWKKTLLV 60
             MQ + T++FSGGWR+RVS                  NHLDLNAVIWL+NYLQ W+KTLL+
Sbjct:   438 MQNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQGWRKTLLI 497

Query:    61 VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKS 120
             VSHDQ FL+++CTDIIHLD ++L YY+GN+  FKKMY QK+KEL K+YE QEK+++E+K+
Sbjct:   498 VSHDQGFLDDVCTDIIHLDTQRLHYYRGNYMTFKKMYQQKQKELLKQYEKQEKKLKELKA 557

Query:   121 QGMSKEKAERQHSHKALKEQ--ARKRVQXXXXXXXXXXXXXXREYIVKFRFXXXXXXXXX 178
              G S ++AE+Q      ++Q   R++ Q              REY V+F F         
Sbjct:   558 GGKSTKQAEKQTKEVLTRKQQKCRRKNQDEESQDPPELLKRPREYTVRFTFPDPPPLSPP 617

Query:   179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
             VLGLH VTFGY G K L + ++FG+DM+SR+ +VGPNG+GKST L LL G+LTP  G++
Sbjct:   618 VLGLHGVTFGYEGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTNGEM 676

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|Q8NE71 ABCF1 "ATP-binding cassette sub-family F member 1" [Homo sapiens (taxid:9606)]

 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 119/239 (49%), Positives = 160/239 (66%)

Query:     1 MQEKSTKEFSGGWRIRVSXXXXXXXXXXXXXXXXXXNHLDLNAVIWLDNYLQTWKKTLLV 60
             MQ + T++FSGGWR+RVS                  NHLDLNAVIWL+NYLQ W+KTLL+
Sbjct:   444 MQNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQGWRKTLLI 503

Query:    61 VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKS 120
             VSHDQ FL+++CTDIIHLD ++L YY+GN+  FKKMY QK+KEL K+YE QEK+++E+K+
Sbjct:   504 VSHDQGFLDDVCTDIIHLDAQRLHYYRGNYMTFKKMYQQKQKELLKQYEKQEKKLKELKA 563

Query:   121 QGMSKEKAERQHSHKALKEQ--ARKRVQXXXXXXXXXXXXXXREYIVKFRFXXXXXXXXX 178
              G S ++AE+Q      ++Q   R++ Q              +EY V+F F         
Sbjct:   564 GGKSTKQAEKQTKEALTRKQQKCRRKNQDEESQEAPELLKRPKEYTVRFTFPDPPPLSPP 623

Query:   179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
             VLGLH VTFGY G K L + ++FG+DM+SR+ +VGPNG+GKST L LL G+LTP  G++
Sbjct:   624 VLGLHGVTFGYQGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTHGEM 682

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;IDA

GO:0005840 "ribosome" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA;IDA

GO:0005654 "nucleoplasm" evidence=IEA;IDA

GO:0006413 "translational initiation" evidence=IMP

GO:0045727 "positive regulation of translation" evidence=IDA

GO:0008494 "translation activator activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0043022 "ribosome binding" evidence=IDA

GO:0042788 "polysomal ribosome" evidence=IDA

GO:0042254 "ribosome biogenesis" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006412 "translation" evidence=TAS

GO:0006954 "inflammatory response" evidence=TAS

GO:0008135 "translation factor activity, nucleic acid binding" evidence=TAS

UNIPROTKB|Q7YR37 ABCF1 "ATP-binding cassette sub-family F member 1" [Pan troglodytes (taxid:9598)]

 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 119/239 (49%), Positives = 160/239 (66%)

Query:     1 MQEKSTKEFSGGWRIRVSXXXXXXXXXXXXXXXXXXNHLDLNAVIWLDNYLQTWKKTLLV 60
             MQ + T++FSGGWR+RVS                  NHLDLNAVIWL+NYLQ W+KTLL+
Sbjct:   406 MQNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQGWRKTLLI 465

Query:    61 VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKS 120
             VSHDQ FL+++CTDIIHLD ++L YY+GN+  FKKMY QK+KEL K+YE QEK+++E+K+
Sbjct:   466 VSHDQGFLDDVCTDIIHLDAQRLHYYRGNYMTFKKMYQQKQKELLKQYEKQEKKLKELKA 525

Query:   121 QGMSKEKAERQHSHKALKEQ--ARKRVQXXXXXXXXXXXXXXREYIVKFRFXXXXXXXXX 178
              G S ++AE+Q      ++Q   R++ Q              +EY V+F F         
Sbjct:   526 GGKSTKQAEKQTKEALTRKQQKCRRKNQDEESQEAPELLKRPKEYTVRFTFPDPPPLSPP 585

Query:   179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
             VLGLH VTFGY G K L + ++FG+DM+SR+ +VGPNG+GKST L LL G+LTP  G++
Sbjct:   586 VLGLHGVTFGYEGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTHGEM 644

GO:0005524 "ATP binding" evidence=ISS

GO:0005635 "nuclear envelope" evidence=ISS

GO:0005654 "nucleoplasm" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0008494 "translation activator activity" evidence=ISS

GO:0042788 "polysomal ribosome" evidence=ISS

GO:0043022 "ribosome binding" evidence=ISS

GO:0045727 "positive regulation of translation" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

UNIPROTKB|H0YGW7 ABCF1 "ATP-binding cassette sub-family F member 1" [Homo sapiens (taxid:9606)]

 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 119/239 (49%), Positives = 160/239 (66%)

Query:     1 MQEKSTKEFSGGWRIRVSXXXXXXXXXXXXXXXXXXNHLDLNAVIWLDNYLQTWKKTLLV 60
             MQ + T++FSGGWR+RVS                  NHLDLNAVIWL+NYLQ W+KTLL+
Sbjct:   195 MQNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVIWLNNYLQGWRKTLLI 254

Query:    61 VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKS 120
             VSHDQ FL+++CTDIIHLD ++L YY+GN+  FKKMY QK+KEL K+YE QEK+++E+K+
Sbjct:   255 VSHDQGFLDDVCTDIIHLDAQRLHYYRGNYMTFKKMYQQKQKELLKQYEKQEKKLKELKA 314

Query:   121 QGMSKEKAERQHSHKALKEQ--ARKRVQXXXXXXXXXXXXXXREYIVKFRFXXXXXXXXX 178
              G S ++AE+Q      ++Q   R++ Q              +EY V+F F         
Sbjct:   315 GGKSTKQAEKQTKEALTRKQQKCRRKNQDEESQEAPELLKRPKEYTVRFTFPDPPPLSPP 374

Query:   179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
             VLGLH VTFGY G K L + ++FG+DM+SR+ +VGPNG+GKST L LL G+LTP  G++
Sbjct:   375 VLGLHGVTFGYQGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTHGEM 433

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q767L0	ABCF1_PIG	No assigned EC number	0.5335	0.8792	0.3878	yes	N/A
Q7YR37	ABCF1_PANTR	No assigned EC number	0.5335	0.8792	0.3878	yes	N/A
Q6P542	ABCF1_MOUSE	No assigned EC number	0.5363	0.8792	0.3739	yes	N/A
Q6MG08	ABCF1_RAT	No assigned EC number	0.5363	0.8792	0.3730	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	356
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	3e-95
PLN03073	718	PLN03073, PLN03073, ABC transporter F family; Prov	5e-84
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	3e-55
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	1e-39
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	8e-38
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	9e-35
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	1e-34
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	2e-33
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	6e-23
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	3e-19
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	2e-18
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	5e-17
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	4e-16
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	8e-16
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	3e-15
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	1e-14
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	2e-14
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	2e-14
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	3e-14
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	3e-14
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	3e-14
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	4e-14
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	6e-14
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	6e-14
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	7e-14
COG1123	539	COG1123, COG1123, ATPase components of various ABC	7e-14
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	1e-13
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	1e-13
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	2e-13
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	2e-13
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	3e-13
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	4e-13
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	9e-13
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	9e-13
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	1e-12
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	1e-12
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	1e-12
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	1e-12
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	2e-12
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	2e-12
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	3e-12
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	3e-12
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	4e-12
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	4e-12
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	4e-12
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	4e-12
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	6e-12
TIGR03873	256	TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra	8e-12
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	1e-11
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	2e-11
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	2e-11
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	3e-11
pfam00005	119	pfam00005, ABC_tran, ABC transporter	3e-11
COG1123	539	COG1123, COG1123, ATPase components of various ABC	4e-11
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	4e-11
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	4e-11
PRK13539	207	PRK13539, PRK13539, cytochrome c biogenesis protei	4e-11
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	4e-11
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	5e-11
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	5e-11
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	6e-11
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	9e-11
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	1e-10
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	1e-10
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	1e-10
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	1e-10
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	1e-10
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	1e-10
pfam00005	119	pfam00005, ABC_tran, ABC transporter	2e-10
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	2e-10
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	2e-10
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	2e-10
cd03292	214	cd03292, ABC_FtsE_transporter, ATP-binding cassett	2e-10
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	2e-10
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	2e-10
PLN03073	718	PLN03073, PLN03073, ABC transporter F family; Prov	3e-10
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	3e-10
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	3e-10
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	3e-10
TIGR01189	198	TIGR01189, ccmA, heme ABC exporter, ATP-binding pr	3e-10
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	3e-10
COG4987	573	COG4987, CydC, ABC-type transport system involved	3e-10
cd03231	201	cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog	3e-10
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	7e-10
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	7e-10
TIGR00958	711	TIGR00958, 3a01208, Conjugate Transporter-2 (CT2)	7e-10
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	7e-10
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	1e-09
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	1e-09
PRK10619	257	PRK10619, PRK10619, histidine/lysine/arginine/orni	1e-09
cd03297	214	cd03297, ABC_ModC_molybdenum_transporter, ATP-bind	1e-09
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	1e-09
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	2e-09
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	2e-09
COG4988	559	COG4988, CydD, ABC-type transport system involved	2e-09
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	2e-09
COG4559	259	COG4559, COG4559, ABC-type hemin transport system,	2e-09
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	2e-09
COG4988	559	COG4988, CydD, ABC-type transport system involved	3e-09
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	3e-09
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	3e-09
COG4559	259	COG4559, COG4559, ABC-type hemin transport system,	4e-09
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	4e-09
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	5e-09
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	5e-09
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	5e-09
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	6e-09
COG4586	325	COG4586, COG4586, ABC-type uncharacterized transpo	7e-09
COG4988	559	COG4988, CydD, ABC-type transport system involved	8e-09
TIGR01277	213	TIGR01277, thiQ, thiamine ABC transporter, ATP-bin	8e-09
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	9e-09
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	1e-08
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	1e-08
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	1e-08
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	1e-08
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	1e-08
PRK13652	277	PRK13652, cbiO, cobalt transporter ATP-binding sub	1e-08
PRK09536	402	PRK09536, btuD, corrinoid ABC transporter ATPase;	1e-08
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	1e-08
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	1e-08
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	1e-08
TIGR01842	544	TIGR01842, type_I_sec_PrtD, type I secretion syste	2e-08
COG4181	228	COG4181, COG4181, Predicted ABC-type transport sys	2e-08
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	2e-08
pfam12848	85	pfam12848, ABC_tran_2, ABC transporter	2e-08
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	2e-08
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	2e-08
PRK14244	251	PRK14244, PRK14244, phosphate ABC transporter ATP-	2e-08
PRK13647	274	PRK13647, cbiO, cobalt transporter ATP-binding sub	2e-08
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	3e-08
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	3e-08
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	3e-08
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	3e-08
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	3e-08
COG4133	209	COG4133, CcmA, ABC-type transport system involved	3e-08
PRK14255	252	PRK14255, PRK14255, phosphate ABC transporter ATP-	3e-08
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	3e-08
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	4e-08
cd03298	211	cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin	4e-08
COG0444	316	COG0444, DppD, ABC-type dipeptide/oligopeptide/nic	4e-08
cd03217	200	cd03217, ABC_FeS_Assembly, ABC-type transport syst	4e-08
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	4e-08
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	6e-08
PRK11264	250	PRK11264, PRK11264, putative amino-acid ABC transp	6e-08
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	6e-08
PRK13538	204	PRK13538, PRK13538, cytochrome c biogenesis protei	6e-08
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	6e-08
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	7e-08
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	7e-08
COG4598	256	COG4598, HisP, ABC-type histidine transport system	7e-08
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	7e-08
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	7e-08
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	7e-08
TIGR03796	710	TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste	8e-08
COG0396	251	COG0396, sufC, Cysteine desulfurase activator ATPa	8e-08
cd03220	224	cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon	8e-08
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	9e-08
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	9e-08
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	1e-07
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	1e-07
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	1e-07
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	1e-07
COG4175	386	COG4175, ProV, ABC-type proline/glycine betaine tr	1e-07
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	1e-07
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	1e-07
COG4619	223	COG4619, COG4619, ABC-type uncharacterized transpo	1e-07
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	1e-07
PRK13543	214	PRK13543, PRK13543, cytochrome c biogenesis protei	1e-07
PRK10851	353	PRK10851, PRK10851, sulfate/thiosulfate transporte	1e-07
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	2e-07
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	2e-07
TIGR03873	256	TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra	2e-07
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	2e-07
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	2e-07
PRK11174	588	PRK11174, PRK11174, cysteine/glutathione ABC trans	2e-07
PRK11174	588	PRK11174, PRK11174, cysteine/glutathione ABC trans	2e-07
TIGR03522	301	TIGR03522, GldA_ABC_ATP, gliding motility-associat	2e-07
TIGR02211	221	TIGR02211, LolD_lipo_ex, lipoprotein releasing sys	2e-07
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	2e-07
PRK11629	233	PRK11629, lolD, lipoprotein transporter ATP-bindin	2e-07
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	2e-07
COG4987	573	COG4987, CydC, ABC-type transport system involved	3e-07
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	3e-07
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	3e-07
COG1134	249	COG1134, TagH, ABC-type polysaccharide/polyol phos	3e-07
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	3e-07
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	3e-07
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	4e-07
COG4987	573	COG4987, CydC, ABC-type transport system involved	4e-07
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	4e-07
TIGR02982	220	TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi	4e-07
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	4e-07
PRK10790	592	PRK10790, PRK10790, putative multidrug transporter	5e-07
cd03294	269	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette	5e-07
PRK09544	251	PRK09544, znuC, high-affinity zinc transporter ATP	5e-07
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	5e-07
PRK09580	248	PRK09580, sufC, cysteine desulfurase ATPase compon	5e-07
cd03292	214	cd03292, ABC_FtsE_transporter, ATP-binding cassett	6e-07
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	6e-07
PRK11629	233	PRK11629, lolD, lipoprotein transporter ATP-bindin	6e-07
PRK09544	251	PRK09544, znuC, high-affinity zinc transporter ATP	6e-07
cd03296	239	cd03296, ABC_CysA_sulfate_importer, ATP-binding ca	6e-07
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	6e-07
PRK11247	257	PRK11247, ssuB, aliphatic sulfonates transport ATP	6e-07
PRK14245	250	PRK14245, PRK14245, phosphate ABC transporter ATP-	6e-07
TIGR00972	247	TIGR00972, 3a0107s01c2, phosphate ABC transporter,	6e-07
COG4136	213	COG4136, COG4136, ABC-type uncharacterized transpo	7e-07
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	8e-07
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	8e-07
TIGR03608	206	TIGR03608, L_ocin_972_ABC, putative bacteriocin ex	8e-07
COG4161	242	COG4161, ArtP, ABC-type arginine transport system,	8e-07
TIGR03265	353	TIGR03265, PhnT2, putative 2-aminoethylphosphonate	8e-07
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	9e-07
COG1134	249	COG1134, TagH, ABC-type polysaccharide/polyol phos	9e-07
PRK10522	547	PRK10522, PRK10522, multidrug transporter membrane	9e-07
PRK11432	351	PRK11432, fbpC, ferric transporter ATP-binding sub	9e-07
TIGR01192	585	TIGR01192, chvA, glucan exporter ATP-binding prote	9e-07
TIGR03771	223	TIGR03771, anch_rpt_ABC, anchored repeat-type ABC	9e-07
PRK09536	402	PRK09536, btuD, corrinoid ABC transporter ATPase;	1e-06
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	1e-06
cd03220	224	cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon	1e-06
COG4175	386	COG4175, ProV, ABC-type proline/glycine betaine tr	1e-06
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	1e-06
PRK11176	582	PRK11176, PRK11176, lipid transporter ATP-binding/	1e-06
PRK11124	242	PRK11124, artP, arginine transporter ATP-binding s	1e-06
PRK11231	255	PRK11231, fecE, iron-dicitrate transporter ATP-bin	1e-06
TIGR01978	243	TIGR01978, sufC, FeS assembly ATPase SufC	1e-06
PRK09493	240	PRK09493, glnQ, glutamine ABC transporter ATP-bind	1e-06
PRK11308	327	PRK11308, dppF, dipeptide transporter ATP-binding	1e-06
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	2e-06
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	2e-06
PRK13647	274	PRK13647, cbiO, cobalt transporter ATP-binding sub	2e-06
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	2e-06
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	2e-06
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	2e-06
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	2e-06
cd03296	239	cd03296, ABC_CysA_sulfate_importer, ATP-binding ca	2e-06
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	2e-06
PRK09493	240	PRK09493, glnQ, glutamine ABC transporter ATP-bind	2e-06
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	2e-06
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	2e-06
TIGR03797	686	TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste	2e-06
TIGR03415	382	TIGR03415, ABC_choXWV_ATP, choline ABC transporter	2e-06
PRK10247	225	PRK10247, PRK10247, putative ABC transporter ATP-b	2e-06
TIGR02324	224	TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys	2e-06
PRK14275	286	PRK14275, PRK14275, phosphate ABC transporter ATP-	2e-06
TIGR01187	325	TIGR01187, potA, spermidine/putrescine ABC transpo	2e-06
PRK14257	329	PRK14257, PRK14257, phosphate ABC transporter ATP-	2e-06
PRK14272	252	PRK14272, PRK14272, phosphate ABC transporter ATP-	2e-06
TIGR01184	230	TIGR01184, ntrCD, nitrate transport ATP-binding su	2e-06
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	3e-06
PRK15079	331	PRK15079, PRK15079, oligopeptide ABC transporter A	3e-06
PRK13644	274	PRK13644, cbiO, cobalt transporter ATP-binding sub	3e-06
PRK11248	255	PRK11248, tauB, taurine transporter ATP-binding su	3e-06
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	4e-06
TIGR03796	710	TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste	4e-06
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	4e-06
TIGR03608	206	TIGR03608, L_ocin_972_ABC, putative bacteriocin ex	4e-06
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	4e-06
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	4e-06
PRK10247	225	PRK10247, PRK10247, putative ABC transporter ATP-b	4e-06
PRK10771	232	PRK10771, thiQ, thiamine transporter ATP-binding s	4e-06
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	4e-06
COG4167	267	COG4167, SapF, ABC-type antimicrobial peptide tran	4e-06
COG5265	497	COG5265, ATM1, ABC-type transport system involved	4e-06
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	4e-06
PRK13537	306	PRK13537, PRK13537, nodulation ABC transporter Nod	4e-06
TIGR01842	544	TIGR01842, type_I_sec_PrtD, type I secretion syste	5e-06
cd03298	211	cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin	5e-06
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	5e-06
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	5e-06
PRK14262	250	PRK14262, PRK14262, phosphate ABC transporter ATP-	5e-06
TIGR01187	325	TIGR01187, potA, spermidine/putrescine ABC transpo	6e-06
PRK14240	250	PRK14240, PRK14240, phosphate transporter ATP-bind	6e-06
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	7e-06
PRK13537	306	PRK13537, PRK13537, nodulation ABC transporter Nod	7e-06
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	8e-06
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	8e-06
PRK09473	330	PRK09473, oppD, oligopeptide transporter ATP-bindi	8e-06
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	9e-06
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	9e-06
TIGR02769	265	TIGR02769, nickel_nikE, nickel import ATP-binding	9e-06
PRK11000	369	PRK11000, PRK11000, maltose/maltodextrin transport	9e-06
PRK14258	261	PRK14258, PRK14258, phosphate ABC transporter ATP-	9e-06
COG4615	546	COG4615, PvdE, ABC-type siderophore export system,	9e-06
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	1e-05
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	1e-05
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	1e-05
COG4136	213	COG4136, COG4136, ABC-type uncharacterized transpo	1e-05
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	1e-05
cd03236	255	cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin	1e-05
cd03236	255	cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin	1e-05
TIGR03258	362	TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans	1e-05
COG1117	253	COG1117, PstB, ABC-type phosphate transport system	1e-05
TIGR03005	252	TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB	1e-05
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	2e-05
COG4181	228	COG4181, COG4181, Predicted ABC-type transport sys	2e-05
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	2e-05
cd03294	269	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette	2e-05
PRK11247	257	PRK11247, ssuB, aliphatic sulfonates transport ATP	2e-05
PRK10771	232	PRK10771, thiQ, thiamine transporter ATP-binding s	2e-05
cd03223	166	cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset	2e-05
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	2e-05
COG4148	352	COG4148, ModC, ABC-type molybdate transport system	2e-05
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	2e-05
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	2e-05
cd03252	237	cd03252, ABCC_Hemolysin, ATP-binding cassette doma	2e-05
TIGR02142	354	TIGR02142, modC_ABC, molybdenum ABC transporter, A	2e-05
PRK14251	251	PRK14251, PRK14251, phosphate ABC transporter ATP-	2e-05
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	2e-05
cd03222	177	cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett	2e-05
COG1123	539	COG1123, COG1123, ATPase components of various ABC	3e-05
cd03297	214	cd03297, ABC_ModC_molybdenum_transporter, ATP-bind	3e-05
PRK11248	255	PRK11248, tauB, taurine transporter ATP-binding su	3e-05
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	3e-05
TIGR03005	252	TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB	3e-05
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	3e-05
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	3e-05
PRK11144	352	PRK11144, modC, molybdate transporter ATP-binding	3e-05
PRK14246	257	PRK14246, PRK14246, phosphate ABC transporter ATP-	3e-05
PRK13637	287	PRK13637, cbiO, cobalt transporter ATP-binding sub	3e-05
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	3e-05
PRK14238	271	PRK14238, PRK14238, phosphate transporter ATP-bind	3e-05
TIGR01846	694	TIGR01846, type_I_sec_HlyB, type I secretion syste	3e-05
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	4e-05
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	4e-05
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	4e-05
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	4e-05
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	4e-05
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	4e-05
PRK13637	287	PRK13637, cbiO, cobalt transporter ATP-binding sub	4e-05
PRK10419	268	PRK10419, nikE, nickel transporter ATP-binding pro	4e-05
COG4674	249	COG4674, COG4674, Uncharacterized ABC-type transpo	4e-05
TIGR01288	303	TIGR01288, nodI, ATP-binding ABC transporter famil	4e-05
PRK13651	305	PRK13651, PRK13651, cobalt transporter ATP-binding	4e-05
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	5e-05
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	5e-05
PRK11231	255	PRK11231, fecE, iron-dicitrate transporter ATP-bin	5e-05
PRK10771	232	PRK10771, thiQ, thiamine transporter ATP-binding s	5e-05
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	5e-05
PRK14242	253	PRK14242, PRK14242, phosphate transporter ATP-bind	5e-05
PRK14237	267	PRK14237, PRK14237, phosphate transporter ATP-bind	5e-05
PRK13640	282	PRK13640, cbiO, cobalt transporter ATP-binding sub	5e-05
COG4586	325	COG4586, COG4586, ABC-type uncharacterized transpo	6e-05
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	6e-05
TIGR02982	220	TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi	6e-05
cd03237	246	cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin	6e-05
PRK14250	241	PRK14250, PRK14250, phosphate ABC transporter ATP-	6e-05
PRK11701	258	PRK11701, phnK, phosphonate C-P lyase system prote	6e-05
COG1101	263	COG1101, PhnK, ABC-type uncharacterized transport	6e-05
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	6e-05
PLN03211	659	PLN03211, PLN03211, ABC transporter G-25; Provisio	6e-05
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	6e-05
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	7e-05
TIGR00958	711	TIGR00958, 3a01208, Conjugate Transporter-2 (CT2)	7e-05
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	7e-05
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	7e-05
PRK11264	250	PRK11264, PRK11264, putative amino-acid ABC transp	7e-05
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	7e-05
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	7e-05
cd03237	246	cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin	7e-05
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	7e-05
PRK14252	265	PRK14252, PRK14252, phosphate ABC transporter ATP-	7e-05
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	7e-05
TIGR01277	213	TIGR01277, thiQ, thiamine ABC transporter, ATP-bin	8e-05
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	8e-05
COG4161	242	COG4161, ArtP, ABC-type arginine transport system,	8e-05
PRK11248	255	PRK11248, tauB, taurine transporter ATP-binding su	8e-05
PRK13651	305	PRK13651, PRK13651, cobalt transporter ATP-binding	8e-05
PRK14270	251	PRK14270, PRK14270, phosphate ABC transporter ATP-	8e-05
COG4778	235	COG4778, PhnL, ABC-type phosphonate transport syst	8e-05
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	9e-05
TIGR03410	230	TIGR03410, urea_trans_UrtE, urea ABC transporter,	9e-05
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	1e-04
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	1e-04
COG4619	223	COG4619, COG4619, ABC-type uncharacterized transpo	1e-04
TIGR02211	221	TIGR02211, LolD_lipo_ex, lipoprotein releasing sys	1e-04
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	1e-04
TIGR00972	247	TIGR00972, 3a0107s01c2, phosphate ABC transporter,	1e-04
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	1e-04
PRK11124	242	PRK11124, artP, arginine transporter ATP-binding s	1e-04
COG4148	352	COG4148, ModC, ABC-type molybdate transport system	1e-04
TIGR01288	303	TIGR01288, nodI, ATP-binding ABC transporter famil	1e-04
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	1e-04
PLN03211	659	PLN03211, PLN03211, ABC transporter G-25; Provisio	1e-04
PRK14260	259	PRK14260, PRK14260, phosphate ABC transporter ATP-	1e-04
PRK14249	251	PRK14249, PRK14249, phosphate ABC transporter ATP-	1e-04
smart00382	148	smart00382, AAA, ATPases associated with a variety	1e-04
PRK14253	249	PRK14253, PRK14253, phosphate ABC transporter ATP-	1e-04
TIGR01193	708	TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t	1e-04
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	1e-04
PRK14266	250	PRK14266, PRK14266, phosphate ABC transporter ATP-	1e-04
PRK13539	207	PRK13539, PRK13539, cytochrome c biogenesis protei	2e-04
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	2e-04
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	2e-04
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	2e-04
TIGR03796	710	TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste	2e-04
PRK10790	592	PRK10790, PRK10790, putative multidrug transporter	2e-04
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	2e-04
PRK10247	225	PRK10247, PRK10247, putative ABC transporter ATP-b	2e-04
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	2e-04
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	2e-04
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	2e-04
cd03223	166	cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset	2e-04
TIGR02142	354	TIGR02142, modC_ABC, molybdenum ABC transporter, A	2e-04
PRK14242	253	PRK14242, PRK14242, phosphate transporter ATP-bind	2e-04
TIGR01193	708	TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t	2e-04
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	2e-04
PRK13649	280	PRK13649, cbiO, cobalt transporter ATP-binding sub	2e-04
PRK14267	253	PRK14267, PRK14267, phosphate ABC transporter ATP-	2e-04
PRK13635	279	PRK13635, cbiO, cobalt transporter ATP-binding sub	2e-04
COG1137	243	COG1137, YhbG, ABC-type (unclassified) transport s	2e-04
cd03291	282	cd03291, ABCC_CFTR1, ATP-binding cassette domain o	2e-04
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	2e-04
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	2e-04
TIGR03411	242	TIGR03411, urea_trans_UrtD, urea ABC transporter,	2e-04
PRK10253	265	PRK10253, PRK10253, iron-enterobactin transporter	2e-04
COG4107	258	COG4107, PhnK, ABC-type phosphonate transport syst	2e-04
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	3e-04
COG4586	325	COG4586, COG4586, ABC-type uncharacterized transpo	3e-04
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	3e-04
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	3e-04
TIGR03265	353	TIGR03265, PhnT2, putative 2-aminoethylphosphonate	3e-04
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	3e-04
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	3e-04
cd03237	246	cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin	3e-04
COG1101	263	COG1101, PhnK, ABC-type uncharacterized transport	3e-04
TIGR03410	230	TIGR03410, urea_trans_UrtE, urea ABC transporter,	3e-04
PRK13649	280	PRK13649, cbiO, cobalt transporter ATP-binding sub	3e-04
COG1137	243	COG1137, YhbG, ABC-type (unclassified) transport s	3e-04
PRK11831	269	PRK11831, PRK11831, putative ABC transporter ATP-b	3e-04
PRK14263	261	PRK14263, PRK14263, phosphate ABC transporter ATP-	3e-04
PRK13634	290	PRK13634, cbiO, cobalt transporter ATP-binding sub	3e-04
COG4152	300	COG4152, COG4152, ABC-type uncharacterized transpo	3e-04
PRK13643	288	PRK13643, cbiO, cobalt transporter ATP-binding sub	3e-04
PRK13641	287	PRK13641, cbiO, cobalt transporter ATP-binding sub	3e-04
PRK14261	253	PRK14261, PRK14261, phosphate ABC transporter ATP-	3e-04
cd03290	218	cd03290, ABCC_SUR1_N, ATP-binding cassette domain	3e-04
PRK14239	252	PRK14239, PRK14239, phosphate transporter ATP-bind	3e-04
cd03222	177	cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett	4e-04
TIGR03410	230	TIGR03410, urea_trans_UrtE, urea ABC transporter,	4e-04
PRK13638	271	PRK13638, cbiO, cobalt transporter ATP-binding sub	4e-04
TIGR02323	253	TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys	4e-04
TIGR02314	343	TIGR02314, ABC_MetN, D-methionine ABC transporter,	4e-04
PRK03695	248	PRK03695, PRK03695, vitamin B12-transporter ATPase	4e-04
PRK15056	272	PRK15056, PRK15056, manganese/iron transporter ATP	4e-04
PRK10982	491	PRK10982, PRK10982, galactose/methyl galaxtoside t	4e-04
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	5e-04
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	5e-04
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	5e-04
cd03252	237	cd03252, ABCC_Hemolysin, ATP-binding cassette doma	5e-04
PRK11701	258	PRK11701, phnK, phosphonate C-P lyase system prote	5e-04
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	5e-04
PRK10253	265	PRK10253, PRK10253, iron-enterobactin transporter	5e-04
PRK11831	269	PRK11831, PRK11831, putative ABC transporter ATP-b	5e-04
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	5e-04
PRK14274	259	PRK14274, PRK14274, phosphate ABC transporter ATP-	5e-04
COG4559	259	COG4559, COG4559, ABC-type hemin transport system,	6e-04
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	6e-04
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	6e-04
TIGR01193	708	TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t	6e-04
cd03291	282	cd03291, ABCC_CFTR1, ATP-binding cassette domain o	6e-04
PRK10535	648	PRK10535, PRK10535, macrolide transporter ATP-bind	6e-04
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	7e-04
PRK10851	353	PRK10851, PRK10851, sulfate/thiosulfate transporte	7e-04
PRK13649	280	PRK13649, cbiO, cobalt transporter ATP-binding sub	7e-04
PRK14268	258	PRK14268, PRK14268, phosphate ABC transporter ATP-	7e-04
PRK14269	246	PRK14269, PRK14269, phosphate ABC transporter ATP-	7e-04
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	8e-04
cd03217	200	cd03217, ABC_FeS_Assembly, ABC-type transport syst	8e-04
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	8e-04
PRK14247	250	PRK14247, PRK14247, phosphate ABC transporter ATP-	8e-04
PRK14254	285	PRK14254, PRK14254, phosphate ABC transporter ATP-	8e-04
TIGR02770	230	TIGR02770, nickel_nikD, nickel import ATP-binding	8e-04
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	9e-04
PRK14236	272	PRK14236, PRK14236, phosphate transporter ATP-bind	9e-04
TIGR00954	659	TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra	9e-04
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	0.001
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	0.001
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	0.001
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	0.001
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	0.001
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	0.001
PRK11247	257	PRK11247, ssuB, aliphatic sulfonates transport ATP	0.001
PRK11176	582	PRK11176, PRK11176, lipid transporter ATP-binding/	0.001
PRK11231	255	PRK11231, fecE, iron-dicitrate transporter ATP-bin	0.001
TIGR03797	686	TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste	0.001
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	0.001
COG4778	235	COG4778, PhnL, ABC-type phosphonate transport syst	0.001
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	0.001
COG4107	258	COG4107, PhnK, ABC-type phosphonate transport syst	0.001
PRK13634	290	PRK13634, cbiO, cobalt transporter ATP-binding sub	0.001
TIGR02323	253	TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys	0.001
PRK14235	267	PRK14235, PRK14235, phosphate transporter ATP-bind	0.001
PRK15112	267	PRK15112, PRK15112, antimicrobial peptide ABC syst	0.001
PRK10584	228	PRK10584, PRK10584, putative ABC transporter ATP-b	0.001
PRK11300	255	PRK11300, livG, leucine/isoleucine/valine transpor	0.001
PRK14241	258	PRK14241, PRK14241, phosphate transporter ATP-bind	0.001
PRK10908	222	PRK10908, PRK10908, cell division protein FtsE; Pr	0.001
PRK14256	252	PRK14256, PRK14256, phosphate ABC transporter ATP-	0.001
COG4178	604	COG4178, COG4178, ABC-type uncharacterized transpo	0.001
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	0.002
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	0.002
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	0.002
PRK11174	588	PRK11174, PRK11174, cysteine/glutathione ABC trans	0.002
TIGR02211	221	TIGR02211, LolD_lipo_ex, lipoprotein releasing sys	0.002
COG1134	249	COG1134, TagH, ABC-type polysaccharide/polyol phos	0.002
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	0.002
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	0.002
TIGR03771	223	TIGR03771, anch_rpt_ABC, anchored repeat-type ABC	0.002
TIGR03258	362	TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans	0.002
COG1117	253	COG1117, PstB, ABC-type phosphate transport system	0.002
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	0.002
cd03222	177	cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett	0.002
PRK14250	241	PRK14250, PRK14250, phosphate ABC transporter ATP-	0.002
PRK14252	265	PRK14252, PRK14252, phosphate ABC transporter ATP-	0.002
smart00382	148	smart00382, AAA, ATPases associated with a variety	0.002
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	0.002
PRK11831	269	PRK11831, PRK11831, putative ABC transporter ATP-b	0.002
PRK03695	248	PRK03695, PRK03695, vitamin B12-transporter ATPase	0.002
COG4178	604	COG4178, COG4178, ABC-type uncharacterized transpo	0.002
PRK13540	200	PRK13540, PRK13540, cytochrome c biogenesis protei	0.002
PRK09452	375	PRK09452, potA, putrescine/spermidine ABC transpor	0.002
PRK14273	254	PRK14273, PRK14273, phosphate ABC transporter ATP-	0.002
COG4604	252	COG4604, CeuD, ABC-type enterochelin transport sys	0.002
PRK13648	269	PRK13648, cbiO, cobalt transporter ATP-binding sub	0.002
PRK10070	400	PRK10070, PRK10070, glycine betaine transporter AT	0.002
PRK10070	400	PRK10070, PRK10070, glycine betaine transporter AT	0.002
PRK14243	264	PRK14243, PRK14243, phosphate transporter ATP-bind	0.002
PRK10575	265	PRK10575, PRK10575, iron-hydroxamate transporter A	0.002
PRK14271	276	PRK14271, PRK14271, phosphate ABC transporter ATP-	0.002
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	0.002
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	0.003
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	0.003
TIGR01192	585	TIGR01192, chvA, glucan exporter ATP-binding prote	0.003
TIGR03797	686	TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste	0.003
COG5265	497	COG5265, ATM1, ABC-type transport system involved	0.003
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	0.003
PRK11701	258	PRK11701, phnK, phosphonate C-P lyase system prote	0.003
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	0.003
PRK13643	288	PRK13643, cbiO, cobalt transporter ATP-binding sub	0.003
PRK13641	287	PRK13641, cbiO, cobalt transporter ATP-binding sub	0.003
TIGR00954	659	TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra	0.003
PRK14271	276	PRK14271, PRK14271, phosphate ABC transporter ATP-	0.003
cd03233	202	cd03233, ABCG_PDR_domain1, First domain of the ple	0.003
pfam03193	161	pfam03193, DUF258, Protein of unknown function, DU	0.003
pfam03193	161	pfam03193, DUF258, Protein of unknown function, DU	0.003
PRK14259	269	PRK14259, PRK14259, phosphate ABC transporter ATP-	0.003
PRK11650	356	PRK11650, ugpC, glycerol-3-phosphate transporter A	0.003
PRK14248	268	PRK14248, PRK14248, phosphate ABC transporter ATP-	0.003
PRK13545	549	PRK13545, tagH, teichoic acids export protein ATP-	0.003
PRK14264	305	PRK14264, PRK14264, phosphate ABC transporter ATP-	0.003
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	0.004
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	0.004
cd03220	224	cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon	0.004
PRK14272	252	PRK14272, PRK14272, phosphate ABC transporter ATP-	0.004
TIGR01184	230	TIGR01184, ntrCD, nitrate transport ATP-binding su	0.004
cd03236	255	cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin	0.004
PRK13640	282	PRK13640, cbiO, cobalt transporter ATP-binding sub	0.004
PRK14266	250	PRK14266, PRK14266, phosphate ABC transporter ATP-	0.004
PRK14241	258	PRK14241, PRK14241, phosphate transporter ATP-bind	0.004
PRK14248	268	PRK14248, PRK14248, phosphate ABC transporter ATP-	0.004
PRK09984	262	PRK09984, PRK09984, phosphonate/organophosphate es	0.004
PRK09984	262	PRK09984, PRK09984, phosphonate/organophosphate es	0.004
CHL00131	252	CHL00131, ycf16, sulfate ABC transporter protein;	0.004
pfam08496	154	pfam08496, Peptidase_S49_N, Peptidase family S49 N	0.004

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score =  293 bits (751), Expect = 3e-95
 Identities = 127/356 (35%), Positives = 186/356 (52%), Gaps = 50/356 (14%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVS 62
           ++     SGGWR RV+LARAL  EP LLLLDEPTNHLDL ++ WL++YL+ +  T++VVS
Sbjct: 148 DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVS 207

Query: 63  HDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQG 122
           HD+ FL+N+ T I+ LD  KL  YKGN++ + +   ++ ++    YE Q+K++ + +   
Sbjct: 208 HDRYFLDNVATHILELDRGKLTPYKGNYSSYLEQKAERLRQEAAAYEKQQKELAKEQEW- 266

Query: 123 MSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPP-YLPPPVLG 181
           + + KA    + KA   ++R +  +  +    E         + FRFP P   L   VL 
Sbjct: 267 IRRGKAAASKAKKA---KSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLE 323

Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241
             +V+ GY GG++LL+ ++F +D   R+A+VGPNG GKST L LL GEL P  G V    
Sbjct: 324 FENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV---- 379

Query: 242 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFP 301
                                                  +    ++IG FDQH  + L P
Sbjct: 380 ---------------------------------------KVGETVKIGYFDQHR-DELDP 399

Query: 302 DDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356
           D T  E L + F +   ++ R  LG FG        P+  LSGG+KAR+ LA+L L
Sbjct: 400 DKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLL 455

Length = 530

>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional

 Score =  269 bits (688), Expect = 5e-84
 Identities = 142/362 (39%), Positives = 196/362 (54%), Gaps = 63/362 (17%)

Query: 1   MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLV 60
           MQ K+TK FSGGWR+R++LARALF+EP LLLLDEPTNHLDL+AV+WL+ YL  W KT +V
Sbjct: 337 MQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIV 396

Query: 61  VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKS 120
           VSH + FLN + TDI+HL  +KL  YKG++  F++   ++ K   K +E  E+    M++
Sbjct: 397 VSHAREFLNTVVTDILHLHGQKLVTYKGDYDTFERTREEQLKNQQKAFESNERSRSHMQA 456

Query: 121 -----QGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYL 175
                +  +K  +  Q   KAL          +D D              KF FP P   
Sbjct: 457 FIDKFRYNAKRASLVQSRIKALDRLGHVDAVVNDPD-------------YKFEFPTPDDR 503

Query: 176 P-PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK 234
           P PP++   D +FGYPGG +L + +NFG+D++SR+A+VGPNGIGKST L L+ GEL P+ 
Sbjct: 504 PGPPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSS 563

Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQH 294
           G V                                            +S ++R+  F QH
Sbjct: 564 GTVF-------------------------------------------RSAKVRMAVFSQH 580

Query: 295 SGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAE 353
             + L     P  Y+M+ F  +P +K R  LG FG+       P+  LSGGQK+RVA A+
Sbjct: 581 HVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK 640

Query: 354 LT 355
           +T
Sbjct: 641 IT 642

Length = 718

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score =  190 bits (485), Expect = 3e-55
 Identities = 123/360 (34%), Positives = 189/360 (52%), Gaps = 71/360 (19%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVS 62
           E+   +FSGGWR+R++LA+AL     LLLLDEPTNHLDL+AVIWL+ +L++++ TL+++S
Sbjct: 144 ERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILIS 203

Query: 63  HDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQG 122
           HD+ FL+ I   IIH++ + LF Y GN++ F+     +  +    YE Q++++  ++S  
Sbjct: 204 HDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFEVQRATRLAQQQAMYESQQERVAHLQSY- 262

Query: 123 MSKEKAERQHSHKALK-EQARKRVQKDDDDEPKELLEKPREYIV--------KFRFPNPP 173
           + + +A      KA K +QA+ R++         +LE+  E I          F F  P 
Sbjct: 263 IDRFRA------KATKAKQAQSRIK---------MLER-MELIAPAHVDNPFHFSFRAPE 306

Query: 174 YLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN 233
            LP P+L +  V+ GY G +++L+ +                       LNL+ G     
Sbjct: 307 SLPNPLLKMEKVSAGY-GDRIILDSIK----------------------LNLVPG----- 338

Query: 234 KGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQ 293
                           SR+ L+G NG GKST + LL GEL P  GE+  +  +++G F Q
Sbjct: 339 ----------------SRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQ 382

Query: 294 HSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ-LGMFGLPSYAHTIPIRDLSGGQKARVALA 352
           H  E L  D++P ++L +L     E+  R  LG FG      T   R  SGG+KAR+ LA
Sbjct: 383 HQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLA 442

Length = 638

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score =  146 bits (371), Expect = 1e-39
 Identities = 83/236 (35%), Positives = 125/236 (52%), Gaps = 28/236 (11%)

Query: 12  GWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNI 71
           GW++RV LA+ALF  P +LLLDEPTN+LD+N + WL++ L     T++++SHD+ FLN++
Sbjct: 159 GWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSV 218

Query: 72  CTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAE-- 129
           CT +  LD  +L  Y GN+                EY     Q RE      +K+KA+  
Sbjct: 219 CTHMADLDYGELRVYPGNY---------------DEYMTAATQARERLLADNAKKKAQIA 263

Query: 130 ------RQHSHKALK-EQARKRVQKDDDDEPKELLEKPREYIVKF-RFPNPPYLPPPVLG 181
                  + S  A K +QA  R ++ D  + +E+  KP      F RF     L    L 
Sbjct: 264 ELQSFVSRFSANASKAKQATSRAKQIDKIKLEEV--KPSSRQNPFIRFEQDKKLHRNALE 321

Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
           + ++T G+     L + +N  L+   R+A++G NG+GK+T L  L GEL P+ G V
Sbjct: 322 VENLTKGF-DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV 376

Length = 530

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score =  141 bits (359), Expect = 8e-38
 Identities = 98/359 (27%), Positives = 167/359 (46%), Gaps = 78/359 (21%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLN 69
           SGG R RV+L R L  +P +LLLDEPTNHLD  +V WL+ +LQ +  T++ V+HD+ FL+
Sbjct: 163 SGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLD 222

Query: 70  NICTDIIHLDMKKLFYYKGNFTLF-----KKMYVQKRKELTKEYELQEKQ--IREMKSQG 122
           N+   I+ LD  +   ++GN++ +     K++  ++++E  ++  L+ +   +R      
Sbjct: 223 NVAGWILELDRGRGIPWEGNYSSWLEQKEKRLEQEEKEESARQKALKRELEWVRSSPKAR 282

Query: 123 MSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLGL 182
            +K KA      + L ++ +KR      +E  E+      YI     P  P L   V+  
Sbjct: 283 QAKSKARLARYEELLSQEFQKR------NETAEI------YI-----PPGPRLGDKVIEA 325

Query: 183 HDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKV 242
            +++ G+ G K+L++ ++F L          P GI                         
Sbjct: 326 ENLSKGF-GDKLLIDDLSFKLP---------PGGI------------------------- 350

Query: 243 NFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPD 302
                    V ++GPNG GKST   ++ G+  P+ G ++    +++   DQ S + L P+
Sbjct: 351 ---------VGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQ-SRDALDPN 400

Query: 303 DTPCEY------LMKLFNLPYE-KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAEL 354
            T  E       +++L     E  SR  +G F          +  LSGG++ RV LA+ 
Sbjct: 401 KTVWEEISGGLDIIQLGK--REVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKT 457

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score =  133 bits (338), Expect = 9e-35
 Identities = 105/392 (26%), Positives = 167/392 (42%), Gaps = 124/392 (31%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVS 62
           + +    SGGW  + +L RAL   P +LLLDEPTNHLD+  + WL+ +L+T++ +++ +S
Sbjct: 151 DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFIS 210

Query: 63  HDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQ----------- 111
           HD+SF+ N+ T I+ LD  KL  Y GN+      Y+ +++E  +  ELQ           
Sbjct: 211 HDRSFIRNMATRIVDLDRGKLVSYPGNYDQ----YLLEKEEALRVEELQNAEFDRKLAQE 266

Query: 112 EKQIREMKSQGMSKEKAERQHSH------KALKEQARKR--------VQKDDDDEPKELL 157
           E  IR    QG+   KA R  +       KAL+ +  +R        +Q ++     ++ 
Sbjct: 267 EVWIR----QGI---KARRTRNEGRVRALKALRRERSERREVMGTAKMQVEEASRSGKI- 318

Query: 158 EKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGI 217
                                V  + +V +    GK L++  +  +    ++AL+GPNG 
Sbjct: 319 ---------------------VFEMENVNYQID-GKQLVKDFSAQVQRGDKIALIGPNGC 356

Query: 218 GKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK 277
           GK+T L L+ G+L  + G++                                        
Sbjct: 357 GKTTLLKLMLGQLQADSGRI---------------------------------------- 376

Query: 278 GELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEK--------SRRQLG---- 325
                  +L +  FDQH  E L P+ T  +      NL   K         R  LG    
Sbjct: 377 ---HCGTKLEVAYFDQHRAE-LDPEKTVMD------NLAEGKQEVMVNGRPRHVLGYLQD 426

Query: 326 -MFGLPSYAHTIPIRDLSGGQKARVALAELTL 356
            +F  P  A T P++ LSGG++ R+ LA L L
Sbjct: 427 FLFH-PKRAMT-PVKALSGGERNRLLLARLFL 456

Length = 635

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score =  124 bits (313), Expect = 1e-34
 Identities = 34/71 (47%), Positives = 51/71 (71%)

Query: 9   FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFL 68
            SGG ++R++LA+ L   P LLLLDEPTNHLDL ++  L+  L+ +  T+++VSHD+ FL
Sbjct: 71  LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFL 130

Query: 69  NNICTDIIHLD 79
           + + T II L+
Sbjct: 131 DQVATKIIELE 141

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score =  129 bits (328), Expect = 2e-33
 Identities = 107/373 (28%), Positives = 166/373 (44%), Gaps = 103/373 (27%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLN 69
           SGG R RV+L R L  +P +LLLDEPTNHLD  +V WL+ +L  +  T++ V+HD+ FL+
Sbjct: 165 SGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLD 224

Query: 70  NICTDIIHLDMKKLFYYKGNFT--LFKKMYVQKRKELTKEYELQEKQIREMKSQ-GMSKE 126
           N+   I+ LD  +   ++GN++  L      QK K L      +EKQ  E   Q  + +E
Sbjct: 225 NVAGWILELDRGRGIPWEGNYSSWL-----EQKAKRL----AQEEKQ--EAARQKALKRE 273

Query: 127 --------KAERQHSHKA--------LKEQARKRVQKDDDDEPKELLEKPREYIVKFRFP 170
                   KA RQ   KA        L E+ +KR      +E  E+      +I     P
Sbjct: 274 LEWVRQSPKA-RQAKSKARLARYEELLSEEYQKR------NETNEI------FI-----P 315

Query: 171 NPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL 230
             P L   V+   +++  + G ++L++ ++F L          P GI             
Sbjct: 316 PGPRLGDKVIEAENLSKSF-GDRLLIDDLSFSLP---------PGGI------------- 352

Query: 231 TPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGK 290
                                V ++GPNG GKST   ++ G+  P+ G ++    +++  
Sbjct: 353 ---------------------VGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAY 391

Query: 291 FDQHSGEHLFPDDTPCEY------LMKLFNLPYE-KSRRQLGMFGLPSYAHTIPIRDLSG 343
            DQ S + L P+ T  E       ++K+ N   E  SR  +G F          +  LSG
Sbjct: 392 VDQ-SRDALDPNKTVWEEISGGLDIIKVGN--REIPSRAYVGRFNFKGGDQQKKVGVLSG 448

Query: 344 GQKARVALAELTL 356
           G++ R+ LA  TL
Sbjct: 449 GERNRLHLA-KTL 460

Length = 556

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 99.2 bits (248), Expect = 6e-23
 Identities = 40/103 (38%), Positives = 64/103 (62%), Gaps = 5/103 (4%)

Query: 1   MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLV 60
            QEK     SGG + R+ LA+ L   P LLLLDEPTNHLD+ ++  L+  L  ++ T+L+
Sbjct: 432 DQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLL 491

Query: 61  VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKE 103
           VSHD+ FL+ + T I  ++  K+  ++G +      Y++++KE
Sbjct: 492 VSHDRYFLDRVATRIWLVE-DKVEEFEGGYE----DYLEQKKE 529

Length = 530

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 82.5 bits (205), Expect = 3e-19
 Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 47/122 (38%)

Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQH 294
           GK+LL+ ++  ++   R+ LVG NG GKST L L+ GEL P++G +     ++IG F+Q 
Sbjct: 12  GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ- 70

Query: 295 SGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAEL 354
                                                         LSGG+K R+ALA+L
Sbjct: 71  ----------------------------------------------LSGGEKMRLALAKL 84

Query: 355 TL 356
            L
Sbjct: 85  LL 86

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 80.8 bits (200), Expect = 2e-18
 Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 3/75 (4%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK---TLLVVSHD 64
           + SGG R RV+LARAL L P LLLLDEPT+ LD  +   L   L+   +   T+++V+HD
Sbjct: 80  QLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHD 139

Query: 65  QSFLNNICTDIIHLD 79
                     +I L 
Sbjct: 140 PELAELAADRVIVLK 154

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 81.9 bits (203), Expect = 5e-17
 Identities = 46/153 (30%), Positives = 65/153 (42%), Gaps = 37/153 (24%)

Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQH 294
            + LLE V+  L+   R+ LVG NG GKST L +L GEL P+ GE+ +   LR+G   Q 
Sbjct: 15  DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQE 74

Query: 295 SGEHLFPDDTPCEYLMKLFNLPYEKSRR------------------------QLGMFGLP 330
               L P+ T  +Y+++ F    E                            +L  + L 
Sbjct: 75  P--PLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLE 132

Query: 331 SYAHTI-----------PIRDLSGGQKARVALA 352
           + A              P+  LSGG + RVALA
Sbjct: 133 ARAEEALLGLGFPDEDRPVSSLSGGWRRRVALA 165

Length = 530

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 74.0 bits (183), Expect = 4e-16
 Identities = 25/56 (44%), Positives = 38/56 (67%), Gaps = 1/56 (1%)

Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
           L +++  Y GGK+LL+ ++  ++   R+ LVG NG GKST L L+ GEL P++G V
Sbjct: 3   LENLSKTY-GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score = 76.6 bits (189), Expect = 8e-16
 Identities = 51/183 (27%), Positives = 82/183 (44%), Gaps = 43/183 (23%)

Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
            V+ + ++T  Y G K  L+ V+F ++      L+GPNG GK+T L +L G L P  G++
Sbjct: 3   EVIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62

Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGE 297
           L+     G D+                              ++R+    RIG   Q    
Sbjct: 63  LV----LGYDV-------------------------VKEPAKVRR----RIGYVPQEP-- 87

Query: 298 HLFPDDTPCEYLM---KLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVA 350
            L+P+ T  E L    +L+ L  E++  +    L +FGL   A+   +R LSGG K R++
Sbjct: 88  SLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANK-KVRTLSGGMKQRLS 146

Query: 351 LAE 353
           +A 
Sbjct: 147 IAL 149

Length = 293

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score = 73.7 bits (182), Expect = 3e-15
 Identities = 53/179 (29%), Positives = 77/179 (43%), Gaps = 42/179 (23%)

Query: 182 LHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
           L +++F YP G +  L+ ++  +     V +VGPNG GKST L LL G L P  G+VL++
Sbjct: 2   LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVD 61

Query: 241 KVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLF 300
                               GK      LK        ELR+    ++G   Q+  +  F
Sbjct: 62  --------------------GKDLTKLSLK--------ELRR----KVGLVFQNP-DDQF 88

Query: 301 PDDTPCEYL---MKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALA 352
              T  E +   ++   LP E+   +    L + GL           LSGGQK RVA+A
Sbjct: 89  FGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDR-SPFTLSGGQKQRVAIA 146

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 72.3 bits (178), Expect = 1e-14
 Identities = 35/78 (44%), Positives = 47/78 (60%), Gaps = 8/78 (10%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD--LNAVIWLDNYLQTWKK----TLLVV 61
           E SGG R R+++ARAL  EP LL+LDEPT+ LD  + A I   N L   KK    T L +
Sbjct: 141 ELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQIL--NLLLELKKERGLTYLFI 198

Query: 62  SHDQSFLNNICTDIIHLD 79
           SHD + + ++C  I  +D
Sbjct: 199 SHDLALVEHMCDRIAVMD 216

Length = 252

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 72.2 bits (178), Expect = 2e-14
 Identities = 48/197 (24%), Positives = 71/197 (36%), Gaps = 56/197 (28%)

Query: 176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 235
             P+L +  ++  + GG   +  V+  +     V L+GPNG GK+T  NL+ G   P+ G
Sbjct: 1   TTPLLEVRGLSKRF-GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSG 59

Query: 236 KVLLEKVNF-GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQH 294
            V+    +  GL       L    GI + TF                           Q 
Sbjct: 60  TVIFRGRDITGLPPHRIARL----GIAR-TF---------------------------QI 87

Query: 295 SGEHLFPDDTPCEYLM----------KLFNLP---------YEKSRRQLGMFGLPSYAHT 335
           +   LFP  T  E +            L   P          E++R  L   GL   A  
Sbjct: 88  T--RLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADR 145

Query: 336 IPIRDLSGGQKARVALA 352
            P  +LS GQ+ R+ +A
Sbjct: 146 -PAGNLSYGQQRRLEIA 161

Length = 250

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score = 69.7 bits (172), Expect = 2e-14
 Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 3/75 (4%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK---KTLLVVSHD 64
           + SGG + R++LA+AL  +P LL+LDEPT+ LD  +       L+  K   KT+L+ SH 
Sbjct: 95  KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHI 154

Query: 65  QSFLNNICTDIIHLD 79
                 +C  +  L+
Sbjct: 155 LEEAERLCDRVAILN 169

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 73.0 bits (180), Expect = 3e-14
 Identities = 29/87 (33%), Positives = 55/87 (63%)

Query: 4   KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSH 63
           KS K  SGG + R+   + +  +P +L++DEPTNH+D+ ++  L+  L+ ++ TL+ VSH
Sbjct: 434 KSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSH 493

Query: 64  DQSFLNNICTDIIHLDMKKLFYYKGNF 90
           D+ F++++ T II +    +  + G +
Sbjct: 494 DREFVSSLATRIIEITPDGVVDFSGTY 520

Length = 530

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score = 69.8 bits (172), Expect = 3e-14
 Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK----KTL 58
           ++   E SGG R RV LARAL  EP +LLLDEPT+HLD+   I L   L+       KT+
Sbjct: 92  DRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTV 151

Query: 59  LVVSHDQSFLNNICTDIIHLDMKKLFYY 86
           ++V HD +        +I L   ++   
Sbjct: 152 VMVLHDLNLAARYADRVILLKDGRIVAQ 179

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score = 69.3 bits (171), Expect = 3e-14
 Identities = 43/174 (24%), Positives = 62/174 (35%), Gaps = 71/174 (40%)

Query: 182 LHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
             +V+F YPG  K +L+ V+  +    +VA+VGP+G GKST L LL     P  G++L+ 
Sbjct: 3   FKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILI- 61

Query: 241 KVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLF 300
                            +G+               +   LRK     I    Q     LF
Sbjct: 62  -----------------DGVDLRDL----------DLESLRK----NIAYVPQDP--FLF 88

Query: 301 PDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRD--LSGGQKARVALA 352
              T                                 IR+  LSGGQ+ R+A+A
Sbjct: 89  -SGT---------------------------------IRENILSGGQRQRIAIA 108

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 71.1 bits (175), Expect = 4e-14
 Identities = 43/140 (30%), Positives = 61/140 (43%), Gaps = 26/140 (18%)

Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--------KSPRL 286
            + +LE ++  ++     AL+GPNG GKST L  + G L P+ GE++        +  RL
Sbjct: 16  NRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRL 75

Query: 287 RIGKFDQHSG-EHLFP---DDT---PCEYLMKLFNLPYEKSRR-------QLGMFGLPSY 332
           RIG   Q S  +  FP    D            F    +K +        ++GM      
Sbjct: 76  RIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMED---L 132

Query: 333 AHTIPIRDLSGGQKARVALA 352
                I +LSGGQK RV LA
Sbjct: 133 RDR-QIGELSGGQKQRVLLA 151

Length = 254

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 72.3 bits (178), Expect = 6e-14
 Identities = 39/116 (33%), Positives = 63/116 (54%), Gaps = 5/116 (4%)

Query: 2   QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVV 61
           Q+K   + SGG R RV LA+ L     +LLLDEPTN LD+  +  L+  L  +    +V+
Sbjct: 437 QQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAGCAVVI 496

Query: 62  SHDQSFLNNICTDIIHLDMK-KLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIR 116
           SHD+ FL+ I T I+  +    + +++GN++     Y + +K    E   Q  +I+
Sbjct: 497 SHDRWFLDRIATHILAFEGDSHVEWFEGNYS----EYEEDKKRRLGEDADQPHRIK 548

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 70.0 bits (172), Expect = 6e-14
 Identities = 54/176 (30%), Positives = 77/176 (43%), Gaps = 40/176 (22%)

Query: 184 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN 243
           +++F YPG K  L+ V+  ++   RV L+GPNG GKST L LL G L P  G+VL++   
Sbjct: 8   NLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVD--- 64

Query: 244 FGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDD 303
                            G  T           +  ELR+    ++G   Q+  + LF   
Sbjct: 65  -----------------GLDTSSEK-------SLLELRQ----KVGLVFQNPDDQLF-GP 95

Query: 304 TPCEYLM-KLFNLPYEKS------RRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
           T  + +   L NL   +          L + GL       P  +LSGGQK RVA+A
Sbjct: 96  TVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDR-PPFNLSGGQKQRVAIA 150

Length = 235

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 70.3 bits (173), Expect = 7e-14
 Identities = 41/132 (31%), Positives = 59/132 (44%), Gaps = 18/132 (13%)

Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR------KSPRLRI 288
           G  +LE +N  ++    VA++GP+G GKST L L+ G   P  GE+         P   I
Sbjct: 15  GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDI 74

Query: 289 G-KFDQHSGEHLFPDDT-------PCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRD 340
           G  F + +   L P  T         E   K      E+++  L + GL  +    P   
Sbjct: 75  GYVFQEDA---LLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-HQ 130

Query: 341 LSGGQKARVALA 352
           LSGG + RVA+A
Sbjct: 131 LSGGMRQRVAIA 142

Length = 248

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 72.2 bits (178), Expect = 7e-14
 Identities = 85/368 (23%), Positives = 136/368 (36%), Gaps = 103/368 (27%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD-------LNAVIWLDNYLQTWKKTLLV 60
           + SGG R RV +A AL L+P LL+ DEPT  LD       L+ +  L   L      +L 
Sbjct: 154 QLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGM---AVLF 210

Query: 61  VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEK-QIREMK 119
           ++HD   +  +   ++ +       YKG                    E+ E     E+ 
Sbjct: 211 ITHDLGVVAELADRVVVM-------YKG--------------------EIVETGPTEEIL 243

Query: 120 SQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPV 179
           S            +   L ++   R+ +      + LL   R   +  R+ +   L    
Sbjct: 244 SNPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLS-VRN--LSKRYGSRKGL---- 296

Query: 180 LGLHDVTFGYPGGKVL-LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
                  F    G+V  ++ V+F L     + LVG +G GKST   +L G L P+ G ++
Sbjct: 297 -------FVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSII 349

Query: 239 LEKVNFGL------DMESRVALV--------GPNGIGKSTFLNLLKGELTPNKGELRKSP 284
            +  +  L       +  R+ +V         P    + T  ++L   L  + G      
Sbjct: 350 FDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNP----RMTVGDILAEPLRIHGGGSGAER 405

Query: 285 RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGG 344
           R R+ +                  L++L  LP E          L  Y H     +LSGG
Sbjct: 406 RARVAE------------------LLELVGLPPE---------FLDRYPH-----ELSGG 433

Query: 345 QKARVALA 352
           Q+ RVA+A
Sbjct: 434 QRQRVAIA 441

Length = 539

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score = 69.4 bits (171), Expect = 1e-13
 Identities = 48/167 (28%), Positives = 66/167 (39%), Gaps = 27/167 (16%)

Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF-GLDME 249
           GG V L+ V+F +       L+GPNG GK+T  NL+ G L P  G VL +  +  GL   
Sbjct: 11  GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPH 70

Query: 250 SRVALVGPNGIGKSTF--LNLLKGELTP--NKGELRKSPRLRIGKFDQHSGEHLFPDDTP 305
               L    GIG+ TF    L   ELT   N         + +    Q            
Sbjct: 71  EIARL----GIGR-TFQIPRLF-PELTVLEN---------VMVAA--QARTGSGLLLARA 113

Query: 306 CEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
                +      E++   L   GL   A   P  +LS GQ+ R+ +A
Sbjct: 114 RREEREA----RERAEELLERVGLADLADR-PAGELSYGQQRRLEIA 155

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score = 68.7 bits (169), Expect = 1e-13
 Identities = 45/136 (33%), Positives = 57/136 (41%), Gaps = 20/136 (14%)

Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------RLRI 288
           G  +LE V+F +     +A+VGPNG GKST L  + G L P  G +R         R RI
Sbjct: 11  GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRI 70

Query: 289 GKFDQHSG-EHLFPDD------TPCEYLMKLFNLPYEKSRRQ-----LGMFGLPSYAHTI 336
           G   Q    +  FP                LF     K+ +      L   GL   A   
Sbjct: 71  GYVPQRRSIDRDFPISVRDVVLMGLYGHKGLF-RRLSKADKAKVDEALERVGLSELADR- 128

Query: 337 PIRDLSGGQKARVALA 352
            I +LSGGQ+ RV LA
Sbjct: 129 QIGELSGGQQQRVLLA 144

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score = 68.3 bits (168), Expect = 2e-13
 Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 3/82 (3%)

Query: 1   MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK---KT 57
           ++++S    SGG + RV++A  L ++P +LLLDEPT  LD      L   L+  K   KT
Sbjct: 127 LRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKT 186

Query: 58  LLVVSHDQSFLNNICTDIIHLD 79
           +++V+HD   L  +   +I L+
Sbjct: 187 IIIVTHDLDLLLELADRVIVLE 208

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score = 67.2 bits (165), Expect = 2e-13
 Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 4/74 (5%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQ 65
           SGG + RV+LARAL ++P +LLLDEPT+ LD      +   L++       T+++V+HD 
Sbjct: 102 SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL 161

Query: 66  SFLNNICTDIIHLD 79
                +   ++ L 
Sbjct: 162 DEAARLADRVVVLR 175

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score = 67.9 bits (167), Expect = 3e-13
 Identities = 51/179 (28%), Positives = 74/179 (41%), Gaps = 41/179 (22%)

Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241
           L  +T  + GG+ +L+ V+  +     +A++GP+G GKST L L+ G L P+ G+VL++ 
Sbjct: 3   LRGLTKSF-GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDG 61

Query: 242 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFP 301
            +     E+                            EL +  R R+G   Q     LF 
Sbjct: 62  EDISGLSEA----------------------------ELYRL-RRRMGMLFQSGA--LFD 90

Query: 302 DDTPCE----YLMKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALA 352
             T  E     L +   L  E+ R      L   GL       P  +LSGG K RVALA
Sbjct: 91  SLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYP-AELSGGMKKRVALA 148

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score = 67.5 bits (166), Expect = 4e-13
 Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 22/139 (15%)

Query: 232 PNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL----------R 281
               K  ++ ++  +       L+G NG GK+T L +L GEL P  G            R
Sbjct: 11  KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR 70

Query: 282 KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ--------LGMFGLPSYA 333
           K+ R  +G   Q     LF + T  E+L   +       + +        L + GL   A
Sbjct: 71  KAARQSLGYCPQFDA--LFDELTVREHLR-FYARLKGLPKSEIKEEVELLLRVLGLTDKA 127

Query: 334 HTIPIRDLSGGQKARVALA 352
           +    R LSGG K +++LA
Sbjct: 128 NK-RARTLSGGMKRKLSLA 145

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score = 66.4 bits (163), Expect = 9e-13
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK---KTLLVVSHD 64
           E SGG + RV LARAL  +P LLLLDEP   +D      +   L+  +    T+LVV+HD
Sbjct: 132 ELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHD 191

Query: 65  QSFLNNICTDIIHLDMKKLFY 85
              +      ++ L+   +  
Sbjct: 192 LGLVLEYFDRVLLLNRTVVAS 212

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score = 66.5 bits (163), Expect = 9e-13
 Identities = 58/177 (32%), Positives = 81/177 (45%), Gaps = 41/177 (23%)

Query: 184 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN 243
           +V+  YPGG+  L  V+F +     V L GP+G GKST L L+ GE  P +GK+L+    
Sbjct: 6   NVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILV---- 61

Query: 244 FGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGK-FDQHSGEHLFPD 302
            G D                  L+ LKG   P    LR+    +IG  F       L PD
Sbjct: 62  NGHD------------------LSRLKGREIP---FLRR----QIGVVFQDF---RLLPD 93

Query: 303 DTPCE---YLMKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALA 352
            T  E     +++   P  + RR+    L + GL   A  +P   LSGG++ RVA+A
Sbjct: 94  RTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-QLSGGEQQRVAIA 149

Length = 223

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score = 65.1 bits (160), Expect = 1e-12
 Identities = 22/58 (37%), Positives = 38/58 (65%), Gaps = 1/58 (1%)

Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
           + +++ GY GG+ +L+ ++  ++    V ++GPNG GKST L  L G L P+ G++LL
Sbjct: 2   VENLSVGY-GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILL 58

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score = 68.5 bits (168), Expect = 1e-12
 Identities = 56/192 (29%), Positives = 80/192 (41%), Gaps = 58/192 (30%)

Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
           P L L D++ GYPG   +L+ V+  L    RVA++GP+G GKST L  L G L P +G+V
Sbjct: 333 PTLELRDLSAGYPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEV 392

Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGE 297
            L                  +G+  S+           ++ E+R+    R+    Q +  
Sbjct: 393 TL------------------DGVPVSSL----------DQDEVRR----RVSVCAQDA-- 418

Query: 298 HLF------------PDDTPCEYLMKLFNLPYEKSRRQLGMF--GLPSYAHTIPIRD--- 340
           HLF            PD T  E    L        R  L  +   LP    T+       
Sbjct: 419 HLFDTTVRENLRLARPDATDEELWAAL-------ERVGLADWLRALPDGLDTVLGEGGAR 471

Query: 341 LSGGQKARVALA 352
           LSGG++ R+ALA
Sbjct: 472 LSGGERQRLALA 483

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score = 65.7 bits (161), Expect = 1e-12
 Identities = 45/173 (26%), Positives = 65/173 (37%), Gaps = 38/173 (21%)

Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241
           + +++F Y  G  +L+ ++  L     +AL G NG GK+T   +L G +  + G +LL  
Sbjct: 2   IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG 61

Query: 242 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFP 301
                                                E RKS    IG   Q     LF 
Sbjct: 62  KPI-------------------------------KAKERRKS----IGYVMQDVDYQLFT 86

Query: 302 DDTPCEYLMKLFNLP--YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
           D    E L+ L  L    E++   L    L +     P   LSGGQK R+A+A
Sbjct: 87  DSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-LSLSGGQKQRLAIA 138

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score = 66.8 bits (164), Expect = 1e-12
 Identities = 51/187 (27%), Positives = 77/187 (41%), Gaps = 49/187 (26%)

Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
            +L + +++FGY GGK +L+ ++F +       ++GPNG GKST L  L G L P  G+V
Sbjct: 1   MMLEVENLSFGY-GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59

Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGE 297
           LL+                    GK          L+P   EL K    ++    Q    
Sbjct: 60  LLD--------------------GKDIA------SLSPK--ELAK----KLAYVPQ---S 84

Query: 298 HLFPDDTPCEYL--------MKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQ 345
              P       L        + LF  P ++        L + GL   A   P+ +LSGG+
Sbjct: 85  PSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR-PVDELSGGE 143

Query: 346 KARVALA 352
           + RV +A
Sbjct: 144 RQRVLIA 150

Length = 258

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 67.7 bits (166), Expect = 2e-12
 Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGK 236
             ++ L +++  Y G + LLE V+  L+   R+ LVG NG GKST L +L GEL P+ G+
Sbjct: 1   MSMITLENLSLAY-GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGE 59

Query: 237 VLLEK 241
           V   K
Sbjct: 60  VTRPK 64

Length = 530

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 68.2 bits (168), Expect = 2e-12
 Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 1/91 (1%)

Query: 2   QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVV 61
           Q+K     SGG R R+ LA+ L     +LLLDEPTN LD+  +  L+  L  +    +V+
Sbjct: 439 QQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAVVI 498

Query: 62  SHDQSFLNNICTDIIHL-DMKKLFYYKGNFT 91
           SHD+ FL+ I T I+      ++ +++GNF 
Sbjct: 499 SHDRWFLDRIATHILAFEGDSQVEWFEGNFQ 529

Length = 556

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 65.7 bits (161), Expect = 3e-12
 Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 4/82 (4%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK---KTLLVVSHD 64
           E SGG + RV LARAL   P LLLLDEP   +D+     + + L+  +   KT+L+V+HD
Sbjct: 139 ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHD 198

Query: 65  QSFLNNICTDIIHLDMKKLFYY 86
              +      +I L+ + L   
Sbjct: 199 LGLVMAYFDRVICLN-RHLIAS 219

Length = 254

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 65.7 bits (161), Expect = 3e-12
 Identities = 50/190 (26%), Positives = 77/190 (40%), Gaps = 47/190 (24%)

Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
            ++ + +++  YPGG   L+ VN  ++    VA++GP+G GKST L  L G + P  G++
Sbjct: 2   MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61

Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGE 297
           L      G+ +                              ELRK  R  IG   Q    
Sbjct: 62  LFN----GVQITKL------------------------KGKELRKL-RRDIGMIFQQFN- 91

Query: 298 HLFPDDTPCEYLM-----------KLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLS 342
            L P  +  E ++            LF L  ++ + Q    L   G+   A+      LS
Sbjct: 92  -LVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ-RASTLS 149

Query: 343 GGQKARVALA 352
           GGQ+ RVA+A
Sbjct: 150 GGQQQRVAIA 159

Length = 258

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score = 65.8 bits (161), Expect = 4e-12
 Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 5/125 (4%)

Query: 7   KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK----TLLVVS 62
           +  SGG + R+S+A AL  +P LL+LDEPT+ LD  +   +   L+   K    T+L+ +
Sbjct: 135 RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLST 194

Query: 63  HDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQG 122
           H       +C  +I L+  K+    G     K+ +  K     +   L+  ++ E     
Sbjct: 195 HILEEAEELCDRVIILNDGKIIAE-GTPEELKEKFGGKGVIELEPERLELAELLEGLKLV 253

Query: 123 MSKEK 127
             +E+
Sbjct: 254 KGEEE 258

Length = 293

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score = 64.4 bits (158), Expect = 4e-12
 Identities = 43/148 (29%), Positives = 64/148 (43%), Gaps = 22/148 (14%)

Query: 221 TFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 280
              N+ K           LE ++  ++    VALVGP+G GKST L ++ G   P  GE+
Sbjct: 2   EVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEV 61

Query: 281 R------KSPRLRIG-KFDQHSGEHLFP-----DDTPCEYLMKLFNLPYEKSRRQ----L 324
                    P    G  F Q +   L P     D+      ++L  +P  ++R +    L
Sbjct: 62  LVDGEPVTGPGPDRGYVFQQDA---LLPWLTVLDN--VALGLELQGVPKAEARERAEELL 116

Query: 325 GMFGLPSYAHTIPIRDLSGGQKARVALA 352
            + GL  + +  P   LSGG + RVALA
Sbjct: 117 ELVGLSGFENAYP-HQLSGGMRQRVALA 143

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score = 64.5 bits (158), Expect = 4e-12
 Identities = 43/135 (31%), Positives = 66/135 (48%), Gaps = 21/135 (15%)

Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--------KSPRL 286
               L+ ++  ++    +AL+GP+G GK+T L L+ G   P+ GE+           P  
Sbjct: 12  SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPER 71

Query: 287 R-IGK-FDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQ----LGMFGLPSYAHTIP 337
           R IG  F  ++   LFP  T  E   + +KL  +P  + R +    L + GL    +  P
Sbjct: 72  RNIGMVFQDYA---LFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYP 128

Query: 338 IRDLSGGQKARVALA 352
             +LSGGQ+ RVALA
Sbjct: 129 -HELSGGQQQRVALA 142

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score = 64.5 bits (158), Expect = 4e-12
 Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 3/72 (4%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK--KTLLVVSHDQSF 67
           SGG R  V+LARAL  +P +LLLDEPT+ +D+N+   L   L+     KTL++++H  S 
Sbjct: 142 SGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSL 201

Query: 68  LNNICTDIIHLD 79
           L ++   II +D
Sbjct: 202 L-DLVDRIIVMD 212

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 66.3 bits (162), Expect = 6e-12
 Identities = 47/194 (24%), Positives = 85/194 (43%), Gaps = 46/194 (23%)

Query: 170 PNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE 229
           P+P       +   +V+F YPG K +L+ ++F ++   +VA+VGP+G GKST + LL   
Sbjct: 319 PDPLKDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRL 378

Query: 230 LTPNKGKVLLEKVN----FGLDMESRVALVGPNGIGKSTFL-------NLLKGELTPNKG 278
             P  G++L++ ++        +  R+ +V      +   L       N+  G       
Sbjct: 379 YDPTSGEILIDGIDIRDISLDSLRKRIGIV-----SQDPLLFSGTIRENIALGRPDATDE 433

Query: 279 ELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPI 338
           E+ ++  L++      +  H F           + NLP +     +G  G+         
Sbjct: 434 EIEEA--LKL------ANAHEF-----------IANLP-DGYDTIVGERGVN-------- 465

Query: 339 RDLSGGQKARVALA 352
             LSGGQ+ R+A+A
Sbjct: 466 --LSGGQRQRLAIA 477

Length = 567

>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein

 Score = 64.1 bits (156), Expect = 8e-12
 Identities = 33/73 (45%), Positives = 42/73 (57%), Gaps = 3/73 (4%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA---VIWLDNYLQTWKKTLLVVSHDQS 66
           SGG R RV +ARAL  EP LLLLDEPTNHLD+ A    + L   L     T++   HD +
Sbjct: 139 SGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN 198

Query: 67  FLNNICTDIIHLD 79
              + C  ++ LD
Sbjct: 199 LAASYCDHVVVLD 211

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score = 63.0 bits (154), Expect = 1e-11
 Identities = 55/178 (30%), Positives = 80/178 (44%), Gaps = 39/178 (21%)

Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241
            H+V+  YPGG   L  V+  +     + L GP+G GK+T L LL G LTP++G+V +  
Sbjct: 4   FHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRI-- 61

Query: 242 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFP 301
              G D                  +N L+G   P    LR+    RIG   Q     L P
Sbjct: 62  --AGED------------------VNRLRGRQLP---LLRR----RIGVVFQDF--RLLP 92

Query: 302 DDTPCEYL---MKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALA 352
           D T  E +   +++      + +R+    L   GL   A   P + LSGG++ RVA+A
Sbjct: 93  DRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQ-LSGGEQQRVAIA 149

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 61.1 bits (149), Expect = 2e-11
 Identities = 40/119 (33%), Positives = 51/119 (42%), Gaps = 36/119 (30%)

Query: 234 KGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQ 293
            G+  L+ V+  L     VALVGPNG GKST L  + G L P  GE+       I   D 
Sbjct: 10  GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL------IDGKD- 62

Query: 294 HSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
                             +  LP E+ RR++G            +  LSGGQ+ RVALA
Sbjct: 63  ------------------IAKLPLEELRRRIGY-----------VPQLSGGQRQRVALA 92

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score = 63.0 bits (154), Expect = 2e-11
 Identities = 46/187 (24%), Positives = 79/187 (42%), Gaps = 45/187 (24%)

Query: 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
           + + +++  YP GK  L+ V+  ++    VAL+GP+G GKST L  L G + P  G VL+
Sbjct: 1   IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI 60

Query: 240 EKVNFGL-------DMESRVALV--GPNGIGKSTFL-NLLKGELTPNKGELRKSPRLRIG 289
           +  +           +  ++ ++    N I + + L N+L                   G
Sbjct: 61  DGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVL------------------SG 102

Query: 290 KFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQ 345
           +  + S                LF L  ++ +++    L   GL   A+      LSGGQ
Sbjct: 103 RLGRRS------------TWRSLFGLFPKEEKQRALAALERVGLLDKAYQ-RADQLSGGQ 149

Query: 346 KARVALA 352
           + RVA+A
Sbjct: 150 QQRVAIA 156

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 62.3 bits (152), Expect = 3e-11
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 4/82 (4%)

Query: 2   QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIW----LDNYLQTWKKT 57
            ++     SGG + RV++A  L + P +LLLDEPT  LD          L    +   KT
Sbjct: 132 LDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKT 191

Query: 58  LLVVSHDQSFLNNICTDIIHLD 79
           +++V+HD   +      ++ LD
Sbjct: 192 IIIVTHDLELVLEYADRVVVLD 213

Length = 235

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score = 59.6 bits (145), Expect = 3e-11
 Identities = 38/106 (35%), Positives = 48/106 (45%), Gaps = 20/106 (18%)

Query: 263 STFLNLLKGELTPNKGEL------------RKSPRLRIGKFDQHSGEHLFPDDTPCEYLM 310
           ST L L+ G L P  G +            RK  R RIG   Q     LFP+ T  E L 
Sbjct: 1   STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDP--QLFPELTVRENLF 58

Query: 311 KLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALA 352
             F L  +++  +    L   GLP +    P+  LSGGQK RVA+A
Sbjct: 59  --FGLRDKEADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIA 102

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 63.7 bits (156), Expect = 4e-11
 Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 4/73 (5%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD---LNAVI-WLDNYLQTWKKTLLVVSH 63
           E SGG R RV++ARAL LEP LL+LDEP + LD      V+  L +  +    T L +SH
Sbjct: 429 ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISH 488

Query: 64  DQSFLNNICTDII 76
           D + +  I   + 
Sbjct: 489 DLAVVRYIADRVA 501

Length = 539

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score = 62.2 bits (152), Expect = 4e-11
 Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 4/88 (4%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYL----QTWKKTL 58
           ++   E SGG R RV +ARAL  E  +LLLDEPT+HLD+   I +   L    +    T+
Sbjct: 133 DRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTV 192

Query: 59  LVVSHDQSFLNNICTDIIHLDMKKLFYY 86
           ++V HD +        +I L   K+   
Sbjct: 193 VMVLHDLNLAARYADHLILLKDGKIVAQ 220

Length = 258

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 62.6 bits (153), Expect = 4e-11
 Identities = 56/186 (30%), Positives = 83/186 (44%), Gaps = 42/186 (22%)

Query: 176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 235
           P P++ +  VT  + G +V+L+ V+  +     +A++G +G GKST L L+ G L P+KG
Sbjct: 5   PEPLIEVRGVTKSF-GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKG 63

Query: 236 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHS 295
           ++L+     G D+                   L + EL     E+RK    R+G   Q  
Sbjct: 64  EILI----DGEDIP-----------------QLSEEELY----EIRK----RMGVLFQQG 94

Query: 296 GEHLFPDDTPCE----YLMKLFNLPYEKSRRQ----LGMFGL-PSYAHTIPIRDLSGGQK 346
              LF   T  E     L +   LP    R      L + GL  + A   P  +LSGG +
Sbjct: 95  A--LFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-SELSGGMR 151

Query: 347 ARVALA 352
            RVALA
Sbjct: 152 KRVALA 157

Length = 263

>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional

 Score = 61.4 bits (150), Expect = 4e-11
 Identities = 46/165 (27%), Positives = 60/165 (36%), Gaps = 37/165 (22%)

Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDM-E 249
           GG+VL   ++F L     + L GPNG GK+T L L+ G L P  G + L+  +       
Sbjct: 13  GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVA 72

Query: 250 SRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYL 309
                +G          N +K  LT                      E+L       E+ 
Sbjct: 73  EACHYLGH--------RNAMKPALT--------------------VAENL-------EFW 97

Query: 310 MKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAEL 354
                         L   GL   AH +P   LS GQK RVALA L
Sbjct: 98  AAFLGGEELDIAAALEAVGLAPLAH-LPFGYLSAGQKRRVALARL 141

Length = 207

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score = 63.7 bits (156), Expect = 4e-11
 Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 3/73 (4%)

Query: 9   FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQS 66
            SGG R  V+LARAL  +P +LLLDEPT+ +D  +     + L+ W   KTL++V+H  S
Sbjct: 602 LSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTS 661

Query: 67  FLNNICTDIIHLD 79
            L ++   II +D
Sbjct: 662 LL-DLVDRIIVMD 673

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 63.8 bits (156), Expect = 5e-11
 Identities = 34/69 (49%), Positives = 50/69 (72%), Gaps = 2/69 (2%)

Query: 7   KEFSGGWRIRVSLARALFLEPT-LLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQ 65
           K  SGG R R+ LAR LFL+P+ LL+LDEPTN LD+  +  L+  L +++ T+L+VSHD+
Sbjct: 439 KALSGGERNRLLLAR-LFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDR 497

Query: 66  SFLNNICTD 74
            F++N  T+
Sbjct: 498 QFVDNTVTE 506

Length = 635

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score = 60.5 bits (148), Expect = 5e-11
 Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 33/125 (26%)

Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQH 294
           G+ +L+ ++  ++    V ++GPNG GKST L  L G L P+ GE+           D  
Sbjct: 11  GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEI---------LLDGK 61

Query: 295 SGEHLFPDDTPCEYLMKLFNLPYEKSRRQLG-------MFGLPSYAHTIPIRDLSGGQKA 347
                            L +L  ++  R++        + GL   A   P  +LSGG++ 
Sbjct: 62  D----------------LASLSPKELARKIAYVPQALELLGLAHLADR-PFNELSGGERQ 104

Query: 348 RVALA 352
           RV LA
Sbjct: 105 RVLLA 109

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 61.4 bits (150), Expect = 6e-11
 Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDL---NAVI-WLDNYLQTWKKTLLVVSH 63
           E SGG + RV++ARAL   P ++L DEPT +LD      V+  L    +   KT+++V+H
Sbjct: 142 ELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTH 201

Query: 64  DQSFLNNICTDIIHL 78
           D   L      +I L
Sbjct: 202 D-PELAKYADRVIEL 215

Length = 226

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score = 60.1 bits (146), Expect = 9e-11
 Identities = 51/170 (30%), Positives = 68/170 (40%), Gaps = 37/170 (21%)

Query: 189 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDM 248
           YPGG  +L+ +NF  +    +AL+G NG GKST L  L G L P  G VL++        
Sbjct: 1   YPGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLID-------- 52

Query: 249 ESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEY 308
                       G+          L  ++  L +  R R+G   Q   + LF  D   + 
Sbjct: 53  ------------GE---------PLDYSRKGLLER-RQRVGLVFQDPDDQLFAADVDQDV 90

Query: 309 LMKLFNL---PYEKSRR---QLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
                NL     E  RR    L   G        P   LSGG+K RVA+A
Sbjct: 91  AFGPLNLGLSEAEVERRVREALTAVGASGLRER-PTHCLSGGEKKRVAIA 139

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score = 62.5 bits (152), Expect = 1e-10
 Identities = 50/173 (28%), Positives = 76/173 (43%), Gaps = 38/173 (21%)

Query: 6   TKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQ 65
           T+ FSGG + R+ LA  ++  P LLLLDEPTNHLDL+    L   L  ++  L+VVSHD+
Sbjct: 428 TRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDR 487

Query: 66  SFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYV--------------------------Q 99
             L +   D+  +   K+  + G+   +++                             Q
Sbjct: 488 HLLRSTTDDLYLVHDGKVEPFDGDLEDYQQWLSDVQKQENQTDEAPKENNANSAQARKDQ 547

Query: 100 KRKE---------LTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARK 143
           KR+E         L KE    EK+   M+       +AE +     L +Q+RK
Sbjct: 548 KRREAELRTQTQPLRKEIARLEKE---MEKLNAQLAQAEEKLGDSELYDQSRK 597

Length = 638

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 59.2 bits (144), Expect = 1e-10
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241
           + +++F Y G   L   V+  L     VALVGPNG GKST L  + G L P  G++L++ 
Sbjct: 2   IENLSFRYGGRTALDN-VSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDG 60

Query: 242 VNFG 245
            +  
Sbjct: 61  KDIA 64

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score = 59.3 bits (145), Expect = 1e-10
 Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 5/74 (6%)

Query: 9   FSGGWRIRVSLARALFLEPTLLLLDEPTNHLD-LNAVIWLDNYLQTW--KKTLLVVSHDQ 65
            SGG R R+++ARAL  +P +L+LDE T+ LD     + L+  L+     KT++V++H  
Sbjct: 97  LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEA-LRALAKGKTVIVIAHRL 155

Query: 66  SFLNNICTDIIHLD 79
           S + +    II LD
Sbjct: 156 STIRD-ADRIIVLD 168

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 60.2 bits (147), Expect = 1e-10
 Identities = 55/185 (29%), Positives = 76/185 (41%), Gaps = 42/185 (22%)

Query: 179 VLGLHDVTFGYPGGKV---LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 235
           ++ L +V+  Y  G      L+ VN  ++    VA+VGP+G GKST LNLL G   P  G
Sbjct: 1   MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG 60

Query: 236 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGK-FDQH 294
           +VL+     G D+                   L + EL     +LR   R +IG  F   
Sbjct: 61  EVLIN----GKDLT-----------------KLSEKELA----KLR---RKKIGFVFQNF 92

Query: 295 SGEHLFPDDT-------PCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKA 347
              +L PD T       P     K        +   L + GL          +LSGGQ+ 
Sbjct: 93  ---NLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQ 149

Query: 348 RVALA 352
           RVA+A
Sbjct: 150 RVAIA 154

Length = 226

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score = 60.6 bits (148), Expect = 1e-10
 Identities = 40/123 (32%), Positives = 55/123 (44%), Gaps = 25/123 (20%)

Query: 251 RVALVGPNGIGKSTFL---NLL----------KGELTPNKGELRKSPRLRIGKFDQHSGE 297
            V ++GP+G GKST L   N L           GE   +K ++ K  R ++G   Q    
Sbjct: 30  VVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKL-RRKVGMVFQQF-- 86

Query: 298 HLFPDDTP----CEYLMKLFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARV 349
           +LFP  T         +K+  L      EK+   L   GL   A   P + LSGGQ+ RV
Sbjct: 87  NLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQ-LSGGQQQRV 145

Query: 350 ALA 352
           A+A
Sbjct: 146 AIA 148

Length = 240

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 29/65 (44%), Positives = 38/65 (58%)

Query: 175 LPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK 234
            P P L    V+  YPG +  L  V+F +    RVALVGP+G GKST LNLL G + P +
Sbjct: 317 APAPSLEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTE 376

Query: 235 GKVLL 239
           G + +
Sbjct: 377 GSIAV 381

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 18/34 (52%), Positives = 23/34 (67%)

Query: 4   KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTN 37
           +     SGG + RV++ARAL  +P LLLLDEPT 
Sbjct: 86  EPVGTLSGGQKQRVAIARALLKKPKLLLLDEPTA 119

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 59.9 bits (146), Expect = 2e-10
 Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 4/80 (5%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTL----LVVSH 63
           E SGG R RV+LARA+ L+P LL LDEPT+ LD  +   +D  ++     L    ++V+H
Sbjct: 145 ELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTH 204

Query: 64  DQSFLNNICTDIIHLDMKKL 83
           D   L  I   +  L   K+
Sbjct: 205 DLDSLLTIADRVAVLADGKV 224

Length = 263

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score = 59.5 bits (145), Expect = 2e-10
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 3/85 (3%)

Query: 4   KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK---TLLV 60
           K  K FS G + R+ +A AL   P LL+LDEPTN LD + +  L   + + +    T+L+
Sbjct: 122 KKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLI 181

Query: 61  VSHDQSFLNNICTDIIHLDMKKLFY 85
            SH  S +  +   I  ++  KL  
Sbjct: 182 SSHLLSEIQKVADRIGIINKGKLIE 206

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score = 58.4 bits (142), Expect = 2e-10
 Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 9/61 (14%)

Query: 9   FSGGWRIRVSLARALFLEPTLLLLDEPTNHLD------LNAVIWLDNYLQTWKKTLLVVS 62
            SGG R R+ LARAL+  P +L+LDEP +HLD      LN  I     L+    T +V++
Sbjct: 97  LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAI---AALKAAGATRIVIA 153

Query: 63  H 63
           H
Sbjct: 154 H 154

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter

 Score = 59.3 bits (144), Expect = 2e-10
 Identities = 47/176 (26%), Positives = 68/176 (38%), Gaps = 39/176 (22%)

Query: 184 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN 243
           +VT  YP G   L+ +N  +     V LVGP+G GKST L L+  E  P  G + +   +
Sbjct: 5   NVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQD 64

Query: 244 FGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDD 303
                                 ++ L+G   P    LR+     IG   Q     L PD 
Sbjct: 65  ----------------------VSDLRGRAIP---YLRRK----IGVVFQDF--RLLPDR 93

Query: 304 TPCEYLMKLFNLPYEKSRR-------QLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
              E +     +     R         L + GL      +P  +LSGG++ RVA+A
Sbjct: 94  NVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP-AELSGGEQQRVAIA 148

FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 55/198 (27%), Positives = 80/198 (40%), Gaps = 49/198 (24%)

Query: 170 PNPPYLPPPVLG---LHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLN 224
            +P  LP P+ G      V F YP    +  L+ +N  +     VALVGP+G GKST   
Sbjct: 325 AHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQ 384

Query: 225 LLKGELTPNKGKVLLEKVNFG----LDMESRVALV--GPNGIGKSTFLNLLKGELTPNKG 278
           LL     P  G++LL+ V+       ++ +R+ALV   P     S   N+  G       
Sbjct: 385 LLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDE 444

Query: 279 ELRKSPRLRIGKFDQHSGEHL--FPD--DTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAH 334
           E+  + R        H+ E +   P+  DT                   LG  G+     
Sbjct: 445 EVEAAARA------AHAHEFISALPEGYDTY------------------LGERGV----- 475

Query: 335 TIPIRDLSGGQKARVALA 352
                 LSGGQ+ R+A+A
Sbjct: 476 -----TLSGGQRQRIAIA 488

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 61.1 bits (149), Expect = 2e-10
 Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 8/75 (10%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA---VIWLDNYLQTWKK---TLLVV 61
           EFSGG R R+++ARAL L+P L+LLDEPT+ LD +    V+ L   LQ  +K   + L +
Sbjct: 426 EFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQ--QKHGLSYLFI 483

Query: 62  SHDQSFLNNICTDII 76
           SHD + +  +C  +I
Sbjct: 484 SHDLAVVRALCHRVI 498

Length = 534

>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional

 Score = 61.4 bits (149), Expect = 3e-10
 Identities = 33/87 (37%), Positives = 53/87 (60%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLN 69
           SGG + RV+ A+  F +P +LLLDEP+NHLDL+AV  L   L  ++  +L+VSHD+  ++
Sbjct: 629 SGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLIS 688

Query: 70  NICTDIIHLDMKKLFYYKGNFTLFKKM 96
               ++  +   K+  + G F  +KK 
Sbjct: 689 GSVDELWVVSEGKVTPFHGTFHDYKKT 715

Length = 718

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 59.5 bits (145), Expect = 3e-10
 Identities = 30/62 (48%), Positives = 38/62 (61%), Gaps = 4/62 (6%)

Query: 7   KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD-LNAVIWLDNYLQTW---KKTLLVVS 62
            + SGG R RV++ARAL   P LLLLDEP   LD L      D  L+ W   +KT+L+V+
Sbjct: 129 HQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVT 188

Query: 63  HD 64
           HD
Sbjct: 189 HD 190

Length = 248

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score = 59.4 bits (145), Expect = 3e-10
 Identities = 34/80 (42%), Positives = 46/80 (57%), Gaps = 4/80 (5%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTL----LVVSH 63
           E SGG + RV+LARAL L+P LLL DEPT  LD  A   +D+ +++ KK L    ++V+H
Sbjct: 136 ELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTH 195

Query: 64  DQSFLNNICTDIIHLDMKKL 83
           D      I   I  L   K+
Sbjct: 196 DLDTAFAIADRIAVLYDGKI 215

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 59.8 bits (146), Expect = 3e-10
 Identities = 25/49 (51%), Positives = 33/49 (67%)

Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
           GG+ LL+ V+  L     VA++GPNG GKST L  L GEL+P+ G+V L
Sbjct: 13  GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRL 61

Length = 258

>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA

 Score = 58.9 bits (143), Expect = 3e-10
 Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 18/136 (13%)

Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQH 294
            ++L E ++F L+    + + GPNGIGK+T L +L G L P+ GE+R +    + +    
Sbjct: 12  ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGT-ALAEQRDE 70

Query: 295 SGEHLF---------PDDTPCEYLMKLFNLPYEKSRRQ-----LGMFGLPSYAHTIPIRD 340
              ++          P+ +  E L   F        ++     L   GL  +   +P   
Sbjct: 71  PHRNILYLGHLPGLKPELSALENLH--FWAAIHGGAQRTIEDALAAVGLTGFED-LPAAQ 127

Query: 341 LSGGQKARVALAELTL 356
           LS GQ+ R+ALA L L
Sbjct: 128 LSAGQQRRLALARLWL 143

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score = 59.0 bits (144), Expect = 3e-10
 Identities = 49/180 (27%), Positives = 71/180 (39%), Gaps = 43/180 (23%)

Query: 184 DVTFGYPGGK---VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
           +++  Y GG      L+ V+  ++    VA+VGP+G GKST LN+L G   P  G+V ++
Sbjct: 5   NLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVD 64

Query: 241 KVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGK-FDQHSGEHL 299
             +                        L + EL       R   R  IG  F      +L
Sbjct: 65  GTDI---------------------SKLSEKELA----AFR---RRHIGFVFQSF---NL 93

Query: 300 FPDDT-------PCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
            PD T       P            E++   L   GL    +  P  +LSGGQ+ RVA+A
Sbjct: 94  LPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYP-SELSGGQQQRVAIA 152

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 61.2 bits (149), Expect = 3e-10
 Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 166 KFRFPNPPYLPPP-VLGLHDVTFGYPGGKVL-LEKVNFGLDMESRVALVGPNGIGKSTFL 223
           +  FP+         L L +V+F YPG +   L+  N  L    +VA++G +G GKST L
Sbjct: 322 EVTFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLL 381

Query: 224 NLLKGELTPNKGKVLLE 240
            LL G   P +G + L 
Sbjct: 382 QLLAGAWDPQQGSITLN 398

Length = 573

>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein

 Score = 58.7 bits (142), Expect = 3e-10
 Identities = 39/131 (29%), Positives = 56/131 (42%), Gaps = 10/131 (7%)

Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQH 294
           G+ L   ++F L     + + GPNG GK+T L +L G   P  G +  +      + D  
Sbjct: 12  GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSI 71

Query: 295 SGEHLFPDDTPC--EYLMKLFNLPY-------EKSRRQLGMFGLPSYAHTIPIRDLSGGQ 345
           +   L+    P     L  L NL +       E+    L   GL  +    P+  LS GQ
Sbjct: 72  ARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFED-RPVAQLSAGQ 130

Query: 346 KARVALAELTL 356
           + RVALA L L
Sbjct: 131 QRRVALARLLL 141

CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score = 59.9 bits (146), Expect = 7e-10
 Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 14/99 (14%)

Query: 155 ELLEKPREYIVKFRFPNPPYLPPPVL-G---LHDVTFGYPG-GKVLLEKVNFGLDMESRV 209
           EL++ P E     R     +L  P L G     +V+F YPG     L+ V+  +    +V
Sbjct: 440 ELMQLPVE-----RPEGTRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKV 494

Query: 210 ALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDM 248
           A++G  G GKST L LL G   P +G VLL+    G+D+
Sbjct: 495 AIIGRIGSGKSTLLKLLLGLYQPTEGSVLLD----GVDI 529

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score = 58.0 bits (141), Expect = 7e-10
 Identities = 23/60 (38%), Positives = 37/60 (61%)

Query: 184 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN 243
           +V F Y   K +L+ +NF +     VA+VGP G GK+T +NLL     P KG++L++ ++
Sbjct: 7   NVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGID 66

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein

 Score = 60.1 bits (146), Expect = 7e-10
 Identities = 63/212 (29%), Positives = 86/212 (40%), Gaps = 51/212 (24%)

Query: 158 EKPREYI-VKFRFPNP-PYLPPPVLGL---HDVTFGYPG--GKVLLEKVNFGLDMESRVA 210
           EK  EY+  K   P      P  + GL    DV+F YP      +L+ + F L     VA
Sbjct: 452 EKVFEYLDRKPNIPLTGTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVA 511

Query: 211 LVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDME--------SRVALVG--PNGI 260
           LVGP+G GKST   LL+    P  G+VLL+    G+ +          +VALVG  P   
Sbjct: 512 LVGPSGSGKSTVAALLQNLYQPTGGQVLLD----GVPLVQYDHHYLHRQVALVGQEPVLF 567

Query: 261 GKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKS 320
             S   N+  G        L  +P   I    + +  H F        +M+  N  Y+  
Sbjct: 568 SGSVRENIAYG--------LTDTPDEEIMAAAKAANAHDF--------IMEFPN-GYDTE 610

Query: 321 RRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
             + G               LSGGQK R+A+A
Sbjct: 611 VGEKGSQ-------------LSGGQKQRIAIA 629

[Transport and binding proteins, Other]. Length = 711

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score = 57.9 bits (141), Expect = 7e-10
 Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 4/73 (5%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDL---NAVIWLDNYLQT-WKKTLLVVSH 63
           E SGG R RV++ARAL L P LL+ DEPT+ LD+     ++ L   LQ     TLL ++H
Sbjct: 145 ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITH 204

Query: 64  DQSFLNNICTDII 76
           D   +  I   + 
Sbjct: 205 DLGVVAKIADRVA 217

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score = 56.8 bits (138), Expect = 1e-09
 Identities = 31/125 (24%), Positives = 47/125 (37%), Gaps = 29/125 (23%)

Query: 234 KGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR------KSPRLR 287
             K +L  V+  ++    VAL+GP+G GKST L  + G   P+ G +             
Sbjct: 11  GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDE 70

Query: 288 IGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKA 347
           +    +  G            + + F L    +  +    G            LSGGQ+ 
Sbjct: 71  LPPLRRRIG-----------MVFQDFALFPHLTVLENIALG------------LSGGQQQ 107

Query: 348 RVALA 352
           RVALA
Sbjct: 108 RVALA 112

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score = 57.5 bits (140), Expect = 1e-09
 Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 8/64 (12%)

Query: 7   KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVI------WLDNYLQTWKKTLLV 60
            + SGG R RV+LARAL ++P +LLLDEP + LD  A+        L +  +   KT+L+
Sbjct: 130 HQLSGGMRQRVALARALAVDPDVLLLDEPFSALD--ALTREQLQEELLDIWRETGKTVLL 187

Query: 61  VSHD 64
           V+HD
Sbjct: 188 VTHD 191

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional

 Score = 58.1 bits (140), Expect = 1e-09
 Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 3/85 (3%)

Query: 2   QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD---LNAVIWLDNYLQTWKKTL 58
           Q K     SGG + RVS+ARAL +EP +LL DEPT+ LD   +  V+ +   L    KT+
Sbjct: 146 QGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTM 205

Query: 59  LVVSHDQSFLNNICTDIIHLDMKKL 83
           +VV+H+  F  ++ + +I L   K+
Sbjct: 206 VVVTHEMGFARHVSSHVIFLHQGKI 230

Length = 257

>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 4/80 (5%)

Query: 1   MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTL-- 58
           +  +   + SGG + RV+LARAL  +P LLLLDEP + LD    + L   L+  KK L  
Sbjct: 124 LLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNI 183

Query: 59  --LVVSHDQSFLNNICTDII 76
             + V+HD S    +   I+
Sbjct: 184 PVIFVTHDLSEAEYLADRIV 203

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 28/62 (45%), Positives = 35/62 (56%), Gaps = 4/62 (6%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLD--LNAVI--WLDNYLQTWKKTLLVVSHDQ 65
           SGG R RV+LARAL +EP +LLLDEP   LD  +   +  WL         T + V+HDQ
Sbjct: 139 SGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQ 198

Query: 66  SF 67
             
Sbjct: 199 EE 200

Length = 345

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 1   MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD---LNAVIWLDNYLQTWKKT 57
           ++E+     SGG + R+++A AL     LL+ DEPT+ LD   +  V  L   L    K 
Sbjct: 119 LKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKA 178

Query: 58  LLVVSHDQSFLNNICTDIIHLD 79
           ++V++HD  FL  +C  ++ L 
Sbjct: 179 VIVITHDYEFLAKVCDRVLLLA 200

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score = 56.4 bits (137), Expect = 2e-09
 Identities = 29/63 (46%), Positives = 36/63 (57%), Gaps = 4/63 (6%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSH 63
           E SGG + RV+LARAL  EP+LLLLDEP + LD      L   L+        T + V+H
Sbjct: 130 ELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTH 189

Query: 64  DQS 66
           DQ 
Sbjct: 190 DQE 192

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 58.8 bits (143), Expect = 2e-09
 Identities = 27/64 (42%), Positives = 38/64 (59%)

Query: 176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 235
           PP  + L +++F YP GK  L  +N  +      ALVG +G GKST LNLL G L P +G
Sbjct: 317 PPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQG 376

Query: 236 KVLL 239
           ++ +
Sbjct: 377 EIRV 380

Length = 559

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score = 58.8 bits (143), Expect = 2e-09
 Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 3/73 (4%)

Query: 9   FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQS 66
            SGG R R++LARAL  +P +LLLDE T+ LD      +   L      +T+++++H  S
Sbjct: 610 LSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLS 669

Query: 67  FLNNICTDIIHLD 79
            + +    II LD
Sbjct: 670 TIRS-ADRIIVLD 681

Length = 709

>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 38/138 (27%), Positives = 61/138 (44%), Gaps = 23/138 (16%)

Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL----RKSPRLRIGK 290
           G+ LL+ V+  L     +A++GPNG GKST L  L GEL+P+ GE+             +
Sbjct: 13  GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEE 72

Query: 291 FDQHSGEHLFPDDTPCEY------LMKLFNLPYEKSRRQ----------LGMFGLPSYAH 334
             +H    + P ++   +      ++++  +P+   R            L    L   A 
Sbjct: 73  LARHRA--VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLA- 129

Query: 335 TIPIRDLSGGQKARVALA 352
               R LSGG++ RV LA
Sbjct: 130 GRDYRTLSGGEQQRVQLA 147

Length = 259

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 32/75 (42%), Positives = 47/75 (62%), Gaps = 4/75 (5%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD--LNAVI--WLDNYLQTWKKTLLVVSH 63
           EFSGG R R+++ARAL L+P+L++LDEPT+ LD  + A I   L +  Q  +   L +SH
Sbjct: 425 EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISH 484

Query: 64  DQSFLNNICTDIIHL 78
           D   +  +C  +I L
Sbjct: 485 DLHVVRALCHQVIVL 499

Length = 529

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 58.0 bits (141), Expect = 3e-09
 Identities = 28/59 (47%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLDL-NAVIWLDNYLQTWK-KTLLVVSHDQS 66
           SGG   R++LARAL    +LLLLDEPT HLD     I L    +  K KT+LV++H   
Sbjct: 458 SGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLE 516

Length = 559

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score = 58.0 bits (141), Expect = 3e-09
 Identities = 56/207 (27%), Positives = 91/207 (43%), Gaps = 42/207 (20%)

Query: 155 ELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGY-PGGKVLLEKVNFGLDMESRVALVG 213
           ++L+ P E        + P L   +    +V+F Y P    +LE ++  +    +VA+VG
Sbjct: 448 DILDTPPEQEGDKTLIHLPKLQGEIE-FENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVG 506

Query: 214 PNGIGKSTFLNLLKGELTPNKGKVLLEKVNFG-LDMES---RVALVGPNGI--GKSTFLN 267
            +G GKST L LL G   P +G++LL+ V+   +D+ S   +V  V  +      S   N
Sbjct: 507 RSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIREN 566

Query: 268 LLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLP--YEKSRRQLG 325
           +  G       E+ ++ +L        +G H F           + NLP  Y+     +G
Sbjct: 567 IALGNPEATDEEIIEAAQL--------AGAHEF-----------IENLPMGYD---TPVG 604

Query: 326 MFGLPSYAHTIPIRDLSGGQKARVALA 352
             G           +LSGGQ+ R+ALA
Sbjct: 605 EGGA----------NLSGGQRQRLALA 621

Length = 709

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 3/77 (3%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK---KTLL 59
           ++    FS G R +V++ARAL  +P +LLLDEPT  LD+ A   L  +++  +   K +L
Sbjct: 131 DRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCIL 190

Query: 60  VVSHDQSFLNNICTDII 76
             +H    +  +C  ++
Sbjct: 191 FSTHIMQEVERLCDRVV 207

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 24/53 (45%), Positives = 33/53 (62%)

Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN 243
            G+ LL+ V+  L     +A++GPNG GKST L  L GEL+P+ G+V L  V 
Sbjct: 12  AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVP 64

Length = 259

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score = 57.2 bits (138), Expect = 4e-09
 Identities = 42/169 (24%), Positives = 64/169 (37%), Gaps = 38/169 (22%)

Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMES 250
           GGK  +   +  +       ++G +G GKST + +L   + P  G++ ++  N  +    
Sbjct: 4   GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENI-MKQ-- 60

Query: 251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDT---PCE 307
                                    +  ELR+  R +IG   Q     LFP  T      
Sbjct: 61  -------------------------SPVELREVRRKKIGMVFQQFA--LFPHMTILQNTS 93

Query: 308 YLMKLFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
              +L   P     EK+   L + GL  Y H  P  +LSGG + RV LA
Sbjct: 94  LGPELLGWPEQERKEKALELLKLVGLEEYEHRYP-DELSGGMQQRVGLA 141

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score = 54.7 bits (133), Expect = 5e-09
 Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 42/129 (32%)

Query: 234 KGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR----------KS 283
             K  L+ ++  ++      L+GPNG GK+T + ++ G L P+ GE++          + 
Sbjct: 11  GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEE 70

Query: 284 PRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSG 343
            + RIG   +     L+ + T  E L                               LSG
Sbjct: 71  VKRRIGYLPEEPS--LYENLTVRENL------------------------------KLSG 98

Query: 344 GQKARVALA 352
           G K R+ALA
Sbjct: 99  GMKQRLALA 107

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score = 55.2 bits (134), Expect = 5e-09
 Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 26/140 (18%)

Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFL---NLLKGELTPNKGELR------KSPR 285
              +L+ ++  +     V ++GP+G GKST L   NLL+    P+ G +          +
Sbjct: 12  DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLE---EPDSGTIIIDGLKLTDDK 68

Query: 286 LRIGKFDQHSGE-----HLFPDDTPCEYLM----KLFNLP----YEKSRRQLGMFGLPSY 332
             I +  Q  G      +LFP  T  E +     K+  +      E++   L   GL   
Sbjct: 69  KNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADK 128

Query: 333 AHTIPIRDLSGGQKARVALA 352
           A   P   LSGGQ+ RVA+A
Sbjct: 129 ADAYP-AQLSGGQQQRVAIA 147

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score = 55.8 bits (135), Expect = 5e-09
 Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 4/61 (6%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK----TLLVVSHDQ 65
           SGG + RV++ARAL + P +LLLDEP + LD+     L   L+  +K    T+L V+HD 
Sbjct: 131 SGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDF 190

Query: 66  S 66
            
Sbjct: 191 E 191

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score = 54.6 bits (132), Expect = 6e-09
 Identities = 24/65 (36%), Positives = 42/65 (64%), Gaps = 1/65 (1%)

Query: 180 LGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
           L +++V+F YP   + +L+ ++  L    ++AL+G +G GKST L LL G+L P +G++ 
Sbjct: 1   LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60

Query: 239 LEKVN 243
           L+ V 
Sbjct: 61  LDGVP 65

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 56.2 bits (136), Expect = 7e-09
 Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 6/102 (5%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYL----QTWKKTLLVVSHDQ 65
           S G R+R  LA AL   P +L LDEPT  LD+NA   +  +L    +  + T+L+ +H  
Sbjct: 158 SLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIF 217

Query: 66  SFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKE 107
             +  +C  ++ +D  +L  + G     ++ +    KE + E
Sbjct: 218 DDIATLCDRVLLIDQGQLV-FDGTLAQLQEQF-GPYKEFSVE 257

Length = 325

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 56.5 bits (137), Expect = 8e-09
 Identities = 42/150 (28%), Positives = 58/150 (38%), Gaps = 44/150 (29%)

Query: 234 KGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR-----------K 282
            GK  L  +N  +      ALVG +G GKST LNLL G L P +GE+R           +
Sbjct: 332 DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPE 391

Query: 283 SPRLRIGKFDQHSGEHLFP---------------DDTPCE-----YLMKLFNLPYEKSRR 322
           + R +I    Q+   +LF                D+          L++    P +    
Sbjct: 392 AWRKQISWVSQNP--YLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKP-DGLDT 448

Query: 323 QLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
            +G  G            LSGGQ  R+ALA
Sbjct: 449 VIGEGG----------AGLSGGQAQRLALA 468

Length = 559

>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein

 Score = 54.9 bits (132), Expect = 8e-09
 Identities = 40/127 (31%), Positives = 56/127 (44%), Gaps = 21/127 (16%)

Query: 244 FGLDMES--RVALVGPNGIGKSTFLNLLKGELTPNKGEL--------RKSPRLRIGKFDQ 293
           F L++     VA++GP+G GKST LNL+ G + P  G +          +P  R      
Sbjct: 17  FDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQR--PVSM 74

Query: 294 HSGEH-LFPDDTPCEYL-------MKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQ 345
              E+ LF   T  + +       +KL     EK        G+  Y   +P   LSGGQ
Sbjct: 75  LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-EQLSGGQ 133

Query: 346 KARVALA 352
           + RVALA
Sbjct: 134 RQRVALA 140

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 55.1 bits (133), Expect = 9e-09
 Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 18/135 (13%)

Query: 232 PNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKF 291
             K +  LE V+  +     V ++GP+G GK+T LNL+ G +TP++G ++ + R RI   
Sbjct: 14  EGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGR-RIEGP 72

Query: 292 DQHSG-----EHLFP-----DDTPCEYLMKLFNLP----YEKSRRQLGMFGLPSYAHTIP 337
               G     E L P     D+    + ++L  +      E + + L + GL    H   
Sbjct: 73  GAERGVVFQNEALLPWLNVIDNV--AFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYI 130

Query: 338 IRDLSGGQKARVALA 352
              LSGG + RV +A
Sbjct: 131 W-QLSGGMRQRVGIA 144

Length = 259

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score = 56.1 bits (136), Expect = 1e-08
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLDL-NAVIWLDNYLQTWK-KTLLVVSHD 64
           SGG   R++LARA   +  LLLLDEPT HLD       L+      + +T+L+V+H 
Sbjct: 460 SGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHR 516

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 1/61 (1%)

Query: 180 LGLHDVTFGYPGGK-VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
           L + +V+F YPG +  +L  V+F ++    +A++GP+G GKST   L+ G L P  G+V 
Sbjct: 1   LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60

Query: 239 L 239
           L
Sbjct: 61  L 61

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 54.8 bits (133), Expect = 1e-08
 Identities = 47/147 (31%), Positives = 59/147 (40%), Gaps = 43/147 (29%)

Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR---------KSPR 285
           G+ LL+ V+  L     VA++GPNG GKST L  L GEL+P+ GE+R             
Sbjct: 14  GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAE 73

Query: 286 L--RIGKFDQHSGEHL-FPDDTPCEYLMKLFN---------LPYEKSRRQ--------LG 325
           L  R     QHS   L FP           F           P+  SR +        L 
Sbjct: 74  LARRRAVLPQHS--SLSFP-----------FTVEEVVAMGRAPHGLSRAEDDALVAAALA 120

Query: 326 MFGLPSYAHTIPIRDLSGGQKARVALA 352
              L   A       LSGG++ RV LA
Sbjct: 121 QVDLAHLAGR-DYPQLSGGEQQRVQLA 146

Length = 258

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score = 54.4 bits (132), Expect = 1e-08
 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 5/75 (6%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDL-NAVIWLD---NYLQTWKKTLLVVSH 63
           E SGG + RV++ARAL  +P ++L DEPT +LD       ++      +    T++VV+H
Sbjct: 140 ELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTH 199

Query: 64  DQSFLNNICTDIIHL 78
           D   L      II L
Sbjct: 200 DPE-LAEYADRIIEL 213

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 56.4 bits (137), Expect = 1e-08
 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 3/86 (3%)

Query: 155 ELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKV-LLEKVNFGLDMESRVALVG 213
           E+ E+  E  V F   +        L L++V+F YP     +L+ ++  +    +VAL+G
Sbjct: 316 EITEQKPE--VTFPTTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLG 373

Query: 214 PNGIGKSTFLNLLKGELTPNKGKVLL 239
             G GKST L LL     P +G++LL
Sbjct: 374 RTGCGKSTLLQLLTRAWDPQQGEILL 399

Length = 574

>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 55.2 bits (133), Expect = 1e-08
 Identities = 49/177 (27%), Positives = 68/177 (38%), Gaps = 43/177 (24%)

Query: 184 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN 243
           D+ + Y G K  L  +NF     SR+A++GPNG GKST      G L P  G V      
Sbjct: 8   DLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV------ 61

Query: 244 FGLDMESRVALVGPNGIGKSTFLNLLKGE--LTPNKGELRKSPRLRIGKFDQHSGEHLFP 301
                                   L++GE     N  E+RK     +G   Q+  + +F 
Sbjct: 62  ------------------------LIRGEPITKENIREVRKF----VGLVFQNPDDQIFS 93

Query: 302 DDTPCEYLMKLFNLPYEKS------RRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
                +      NL  ++          L M GL      +P   LSGG+K RVA+A
Sbjct: 94  PTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP-HHLSGGEKKRVAIA 149

Length = 277

>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed

 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 51/178 (28%), Positives = 72/178 (40%), Gaps = 45/178 (25%)

Query: 184 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN 243
            V FG      +L+ V+  +   S V LVGPNG GK+T L  + G LTP  G VL+    
Sbjct: 10  SVEFG---DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVA--- 63

Query: 244 FGLDMES--------RVALVGPNGIGKSTFLNL-LKGELTPNKGELRKSPRLRIGKFDQH 294
            G D+E+        RVA V P      T L+            E+ ++P     +FD  
Sbjct: 64  -GDDVEALSARAASRRVASV-PQD----TSLSFEFDVRQVV---EMGRTPHR--SRFDTW 112

Query: 295 SGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
           +       D                  R +   G+  +A   P+  LSGG++ RV LA
Sbjct: 113 T-----ETDR-------------AAVERAMERTGVAQFADR-PVTSLSGGERQRVLLA 151

Length = 402

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score = 54.5 bits (132), Expect = 1e-08
 Identities = 23/55 (41%), Positives = 34/55 (61%)

Query: 184 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
           +VTF Y  G+ +L+ V+F +    +VA+VGP+G GKST L LL      + G +L
Sbjct: 5   NVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSIL 59

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 1   MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLN----AVIWLDNYLQTWKK 56
             ++   + SGG + RV+LARAL  EP +LLLDEP + LD          L    +    
Sbjct: 129 FADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGI 188

Query: 57  TLLVVSHDQS 66
           T + V+HDQ 
Sbjct: 189 TFVYVTHDQE 198

Length = 352

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 4   KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDL----NAVIWLDNYLQTWKKTLL 59
           +   + SGG + RV++ARAL  EP +LLLDEP   LDL    +  + L    +    T +
Sbjct: 126 RKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFV 185

Query: 60  VVSHDQS 66
            V+HDQ 
Sbjct: 186 FVTHDQE 192

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 5/70 (7%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK---TLLVVSHDQS 66
           SGG R R++LARAL+ +P L++LDEP ++LD      L N ++  K    T++V++H  S
Sbjct: 456 SGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS 515

Query: 67  FLNNICTDII 76
            L   C D I
Sbjct: 516 LLG--CVDKI 523

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544

>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 51/179 (28%), Positives = 77/179 (43%), Gaps = 31/179 (17%)

Query: 179 VLGLHDV--TFGYPGGKV-LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 235
           ++ +H +  T G   G++ +L+ V   +     VA+VGP+G GKST L +L G   P+ G
Sbjct: 6   IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSG 65

Query: 236 KV-LLEKVNFGLDMESRVALVGPN-GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQ 293
           +V LL +    LD ++R AL   + G    +F       L PN   L             
Sbjct: 66  EVRLLGQPLHKLDEDARAALRARHVGFVFQSFH------LIPNLTAL------------- 106

Query: 294 HSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
              E++     P E   +        ++  L   GL       P   LSGG++ RVALA
Sbjct: 107 ---ENV---ALPLELRGESSADSRAGAKALLEAVGLGKRLTHYP-AQLSGGEQQRVALA 158

Length = 228

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 55.2 bits (133), Expect = 2e-08
 Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 4/74 (5%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD-LNAVIWLDNYLQTWK---KTL 58
           +K   E S G R RV+LA+ L  EP +++LDEPT  +D +  V    + L+  +   +T 
Sbjct: 422 DKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTF 481

Query: 59  LVVSHDQSFLNNIC 72
           ++VSHD  F+ ++C
Sbjct: 482 IIVSHDMDFVLDVC 495

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|221805 pfam12848, ABC_tran_2, ABC transporter

 Score = 50.7 bits (122), Expect = 2e-08
 Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 11/95 (11%)

Query: 76  IHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHK 135
           + L+  KL  YKGN++ + +   ++ ++  K YE Q+K+I++++          R  + K
Sbjct: 1   LELENGKLTTYKGNYSQYLEQKEERLEQQEKAYEKQQKEIKKLEEFIDRF----RAKASK 56

Query: 136 ALKEQAR-KRVQKDDDDEPKELLEKPREYIVKFRF 169
           A + Q+R K ++K       E +EKP E   K RF
Sbjct: 57  AKQAQSRIKALEK------MERIEKPVEKKPKIRF 85

This domain is related to pfam00005. Length = 85

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score = 53.3 bits (129), Expect = 2e-08
 Identities = 42/143 (29%), Positives = 56/143 (39%), Gaps = 36/143 (25%)

Query: 223 LNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN--KGEL 280
           L +         GK LL+ V+         A++GP+G GKST LN L G  T     GE+
Sbjct: 9   LTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEV 68

Query: 281 R--------KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSY 332
                    +S R  IG   Q   + L P  T  E LM                      
Sbjct: 69  LINGRPLDKRSFRKIIGYVPQD--DILHPTLTVRETLM---------------------- 104

Query: 333 AHTIPIRDLSGGQKARVALA-EL 354
                +R LSGG++ RV++A EL
Sbjct: 105 -FAAKLRGLSGGERKRVSIALEL 126

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 4/63 (6%)

Query: 7   KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD--LNAVI--WLDNYLQTWKKTLLVVS 62
            + SGG R RV+LARAL  +P + LLDEP ++LD  L  ++   +    +    T + V+
Sbjct: 132 LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVT 191

Query: 63  HDQ 65
           HDQ
Sbjct: 192 HDQ 194

Length = 338

>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 54.1 bits (130), Expect = 2e-08
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 6/103 (5%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHDQ 65
           E SGG + R+ +ARA+ ++PT+LL+DEP + LD  A   ++N +Q  KK  T++VV+H  
Sbjct: 149 ELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSM 208

Query: 66  SFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEY 108
                +   +      ++  Y     +FK      +   TK Y
Sbjct: 209 KQAKKVSDRVAFFQSGRIVEYNTTQEIFK----NPQSSKTKRY 247

Length = 251

>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 54.4 bits (131), Expect = 2e-08
 Identities = 22/54 (40%), Positives = 31/54 (57%)

Query: 184 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
           D+ F Y  G   L+ ++  +   S+ AL+GPNG GKST L  L G   P +G+V
Sbjct: 9   DLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62

Length = 274

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score = 53.3 bits (129), Expect = 3e-08
 Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 3/73 (4%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLD---LNAVIWLDNYLQTWKKTLLVVSHDQS 66
           SGG + RV++ARAL ++P ++L DEPT+ LD   +  V+ +   L     T+++V+H+  
Sbjct: 138 SGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMG 197

Query: 67  FLNNICTDIIHLD 79
           F   +   +I +D
Sbjct: 198 FAREVADRVIFMD 210

Length = 240

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score = 52.9 bits (128), Expect = 3e-08
 Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 6/85 (7%)

Query: 1   MQEKSTK---EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD---LNAVIWLDNYLQTW 54
           + +K+     + SGG + RV++ARAL + P ++L DEPT+ LD   +  V+ +   L   
Sbjct: 125 LADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEE 184

Query: 55  KKTLLVVSHDQSFLNNICTDIIHLD 79
             T++VV+H+  F   +   +I +D
Sbjct: 185 GMTMVVVTHEMGFAREVADRVIFMD 209

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 47/179 (26%), Positives = 76/179 (42%), Gaps = 44/179 (24%)

Query: 185 VTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKV- 242
           VTF YPG  +  L+ ++  ++    VALVG +G GKST +NL+     P+ G++LL+   
Sbjct: 336 VTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHD 395

Query: 243 --NFGL-DMESRVALVGPNGIGKSTFLNLLKGELTPN--KGELRKSPRLRIGKFDQHSGE 297
             ++ L  +  +VALV  +       + L    +  N   G   ++ R  I +    +  
Sbjct: 396 LADYTLASLRRQVALVSQD-------VVLFNDTIANNIAYGRTEQADRAEIERALAAA-- 446

Query: 298 HLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRD----LSGGQKARVALA 352
                     Y     +              LP    T PI +    LSGGQ+ R+A+A
Sbjct: 447 ----------YAQDFVD-------------KLPLGLDT-PIGENGVLLSGGQRQRLAIA 481

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 49/184 (26%), Positives = 78/184 (42%), Gaps = 37/184 (20%)

Query: 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
           +L + +++  YP GK  L+ +N  ++    VA++GP+G GKST L  +   + P+ G +L
Sbjct: 1   MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSIL 60

Query: 239 LEKVNFG-------LDMESRVALVGP--NGIGKSTFL-NLLKGELTPNKGELRKSPRLRI 288
           LE  +           +  R+ ++    N I + T L N+L G L   K   R       
Sbjct: 61  LEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLG-YKPTWRSL----- 114

Query: 289 GKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKAR 348
               + S E                    E++   L   GL   A+      LSGGQ+ R
Sbjct: 115 --LGRFSEED------------------KERALSALERVGLADKAYQ-RADQLSGGQQQR 153

Query: 349 VALA 352
           VA+A
Sbjct: 154 VAIA 157

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 5/77 (6%)

Query: 172 PPYLPPP--VLGL---HDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 226
           PP       V G     DV+F Y   +  +E V+F       VA+VGP G GKST +NLL
Sbjct: 322 PPGAIDLGRVKGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLL 381

Query: 227 KGELTPNKGKVLLEKVN 243
           +    P  G++L++  +
Sbjct: 382 QRVFDPQSGRILIDGTD 398

Length = 588

>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 17/136 (12%)

Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL----------RKSP 284
            + L   ++F L+    + + GPNG GK+T L +L G L P+ GE+          R+S 
Sbjct: 14  ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESY 73

Query: 285 RLRIGKFDQHSGEHLFPDDTPCEYL--MKLFN--LPYEKSRRQLGMFGLPSYAHTIPIRD 340
              +       G  +  + T  E L   + F+           L   GL      +P+  
Sbjct: 74  HQALLYLGHQPG--IKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLED-LPVGQ 130

Query: 341 LSGGQKARVALAELTL 356
           LS GQ+ RVALA L L
Sbjct: 131 LSAGQQRRVALARLWL 146

Length = 209

>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 53.4 bits (128), Expect = 3e-08
 Identities = 33/110 (30%), Positives = 59/110 (53%), Gaps = 12/110 (10%)

Query: 4   KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVV 61
           +S    SGG + RV +AR L ++P ++LLDEPT+ LD  +   ++N L   +   T+++V
Sbjct: 144 ESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILV 203

Query: 62  SHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF---KKMYVQKRKELTKEY 108
           +H     + I         K  F+  GN   F   K+M++  +++ T++Y
Sbjct: 204 THSMHQASRISD-------KTAFFLTGNLIEFADTKQMFLNPKEKETEDY 246

Length = 252

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 5/81 (6%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW-----KKTLLVVSHD 64
           S G + RV +ARAL  +P LL+LDEP   LDL A   L N L+          LL V+H 
Sbjct: 173 SQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHH 232

Query: 65  QSFLNNICTDIIHLDMKKLFY 85
              +    T  + L   ++  
Sbjct: 233 AEEIPPCFTHRLLLKEGEVVA 253

Length = 257

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 40/135 (29%), Positives = 60/135 (44%), Gaps = 24/135 (17%)

Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL-----------RKSPRLR 287
           L+ ++  +     VAL+GP+G GKST L ++ G  TP+ G +             + R R
Sbjct: 18  LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDR 77

Query: 288 -IGKFDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRR------QLGMFGLPSYAHTIP 337
            +G   QH    LFP  T  +   + +K+      ++         L +  L   A   P
Sbjct: 78  KVGFVFQHYA--LFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP 135

Query: 338 IRDLSGGQKARVALA 352
              LSGGQ+ RVALA
Sbjct: 136 -AQLSGGQRQRVALA 149

Length = 345

>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system

 Score = 52.9 bits (127), Expect = 4e-08
 Identities = 44/149 (29%), Positives = 62/149 (41%), Gaps = 38/149 (25%)

Query: 208 RVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESR--VALVGPNGIGKSTF 265
             A+VGP+G GKST LNL+ G  TP  G+VL+  V+      +   V+++          
Sbjct: 26  ITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQE------- 78

Query: 266 LNLLKGELT--PNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ 323
            N L   LT   N G L  SP L++   D+                        +     
Sbjct: 79  -NNLFAHLTVEQNVG-LGLSPGLKLTAEDR------------------------QAIEVA 112

Query: 324 LGMFGLPSYAHTIPIRDLSGGQKARVALA 352
           L   GL      +P  +LSGG++ RVALA
Sbjct: 113 LARVGLAGLEKRLP-GELSGGERQRVALA 140

Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 53.7 bits (130), Expect = 4e-08
 Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 4/73 (5%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDL---NAVIWLDNYLQTWKKT-LLVVSH 63
           E SGG R RV +A AL L P LL+ DEPT  LD+     ++ L   LQ  K T L++++H
Sbjct: 153 ELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITH 212

Query: 64  DQSFLNNICTDII 76
           D   +  I   + 
Sbjct: 213 DLGVVAEIADRVA 225

Length = 316

>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component

 Score = 52.5 bits (127), Expect = 4e-08
 Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 3/73 (4%)

Query: 9   FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQ 65
           FSGG + R  + + L LEP L +LDEP + LD++A+  +   +       K++L+++H Q
Sbjct: 105 FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQ 164

Query: 66  SFLNNICTDIIHL 78
             L+ I  D +H+
Sbjct: 165 RLLDYIKPDRVHV 177

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 50/180 (27%), Positives = 76/180 (42%), Gaps = 44/180 (24%)

Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241
             +VT  Y GGK  +  +N  +     + L+GP+G GK+T + ++   + P  G++ ++ 
Sbjct: 3   FENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFID- 61

Query: 242 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFP 301
                              G+         E  P   ELR+    +IG   Q  G  LFP
Sbjct: 62  -------------------GEDI------REQDPV--ELRR----KIGYVIQQIG--LFP 88

Query: 302 DDTPCE---YLMKLFNLPYEKSRRQ----LGMFGLP--SYAHTIPIRDLSGGQKARVALA 352
             T  E    + KL   P EK R +    L + GL    +A   P  +LSGGQ+ RV +A
Sbjct: 89  HMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYP-HELSGGQQQRVGVA 147

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score = 53.8 bits (130), Expect = 6e-08
 Identities = 47/145 (32%), Positives = 60/145 (41%), Gaps = 30/145 (20%)

Query: 232 PNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR---------- 281
           P +   L   V+F +    RVALVGP+G GKST LNLL G + P +G +           
Sbjct: 332 PGRRPAL-RPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADAD 390

Query: 282 -KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY---EKSRRQLGMFGLPSYAHTIP 337
             S R +I    QH    LF   T  E +      P     + R  L   GL  +   +P
Sbjct: 391 ADSWRDQIAWVPQHP--FLFA-GTIAENI--RLARPDASDAEIREALERAGLDEFVAALP 445

Query: 338 I----------RDLSGGQKARVALA 352
                        LSGGQ  R+ALA
Sbjct: 446 QGLDTPIGEGGAGLSGGQAQRLALA 470

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

 Score = 52.8 bits (127), Expect = 6e-08
 Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 3/76 (3%)

Query: 7   KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD---LNAVIWLDNYLQTWKKTLLVVSH 63
           +  SGG + RV++ARAL + P ++L DEPT+ LD   +  V+     L   K+T+++V+H
Sbjct: 143 RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTH 202

Query: 64  DQSFLNNICTDIIHLD 79
           + SF  ++    I +D
Sbjct: 203 EMSFARDVADRAIFMD 218

Length = 250

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 53.4 bits (129), Expect = 6e-08
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 10/79 (12%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK-------TLLV 60
           + SGG + RV++ARAL   P +LL DE T+ LD        + L+  K        T+++
Sbjct: 141 QLSGGQKQRVAIARALANNPKILLCDEATSALDPETT---QSILELLKDINRELGLTIVL 197

Query: 61  VSHDQSFLNNICTDIIHLD 79
           ++H+   +  IC  +  LD
Sbjct: 198 ITHEMEVVKRICDRVAVLD 216

Length = 339

>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional

 Score = 52.1 bits (126), Expect = 6e-08
 Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 21/138 (15%)

Query: 235 GKVLLEKVNFGL---DMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR-KSPRLRIGK 290
            ++L   ++F L   ++   V + GPNG GK++ L +L G   P+ GE+  +   +R  +
Sbjct: 13  ERILFSGLSFTLNAGEL---VQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR 69

Query: 291 FDQHSGEHLF--------PDDTPCE---YLMKLFNLPYEKSRRQ-LGMFGLPSYAHTIPI 338
            + H  + L+         + T  E   +  +L     +++  + L   GL  +   +P+
Sbjct: 70  DEYHQ-DLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFED-VPV 127

Query: 339 RDLSGGQKARVALAELTL 356
           R LS GQ+ RVALA L L
Sbjct: 128 RQLSAGQQRRVALARLWL 145

Length = 204

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score = 52.2 bits (126), Expect = 6e-08
 Identities = 42/181 (23%), Positives = 71/181 (39%), Gaps = 47/181 (25%)

Query: 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRV-ALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
           L L ++T  Y   + L       L +   +  L+GPNG GK+T + +L     P+ G + 
Sbjct: 1   LQLENLTKRYGKKRAL---DGVSLTLGPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIR 57

Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH 298
           +                  +G            ++     +LR+    RIG   Q  G  
Sbjct: 58  I------------------DGQ-----------DVLKQPQKLRR----RIGYLPQEFG-- 82

Query: 299 LFPDDTPCE---YLMKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVAL 351
           ++P+ T  E   Y+  L  +P ++ + +    L +  L   A    I  LSGG + RV +
Sbjct: 83  VYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKK-KIGSLSGGMRRRVGI 141

Query: 352 A 352
           A
Sbjct: 142 A 142

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score = 52.2 bits (126), Expect = 7e-08
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 182 LHDVTFGYPGGKVL-LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
             +V+F YP  ++  L+ V+  +    +VA++G  G GKST L LL G   P  G VLL+
Sbjct: 5   FRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLD 64

Query: 241 KVN 243
             +
Sbjct: 65  GTD 67

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score = 52.2 bits (126), Expect = 7e-08
 Identities = 42/132 (31%), Positives = 59/132 (44%), Gaps = 15/132 (11%)

Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE--LRKSPRLRIGKFD 292
           G V L+ V+  +       L+GP+G GK+T L L+ G  TP  GE  L       +    
Sbjct: 12  GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHK 71

Query: 293 QHSGE-----HLFPDDTPCE---YLMKLFNLPY----EKSRRQLGMFGLPSYAHTIPIRD 340
           +          LFP  T  E   + ++L  LP     E+    L +  L  YA+  P   
Sbjct: 72  RPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-SQ 130

Query: 341 LSGGQKARVALA 352
           LSGGQ+ RVA+A
Sbjct: 131 LSGGQQQRVAIA 142

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 52.8 bits (127), Expect = 7e-08
 Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 3/74 (4%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD---LNAVIWLDNYLQTWKKTLLVVSHD 64
             SGG + RV++ARAL +EP ++L DEPT+ LD   +  V+ +   L    +T++VV+H+
Sbjct: 152 HLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHE 211

Query: 65  QSFLNNICTDIIHL 78
             F  ++ + +I L
Sbjct: 212 MGFARDVSSHVIFL 225

Length = 256

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score = 52.2 bits (126), Expect = 7e-08
 Identities = 49/184 (26%), Positives = 67/184 (36%), Gaps = 46/184 (25%)

Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG--ELTPNK---GK 236
           L D+   Y G K  L+ ++  +      AL+GP+G GKST L LL    +L P     G+
Sbjct: 3   LRDLNVYY-GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGE 61

Query: 237 VLLEKVNFGLDMESRVAL---VG-----PNGIGKSTFLNLLKGELTPNKGELRKSPRLRI 288
           VLL+  +        + L   VG     PN    S + N+  G             RL  
Sbjct: 62  VLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYG------------LRLH- 108

Query: 289 GKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKAR 348
                   E L   D   E  ++   L  E   R                  LSGGQ+ R
Sbjct: 109 ---GIKLKEEL---DERVEEALRKAALWDEVKDRLHA-------------LGLSGGQQQR 149

Query: 349 VALA 352
           + LA
Sbjct: 150 LCLA 153

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score = 52.4 bits (126), Expect = 7e-08
 Identities = 41/123 (33%), Positives = 55/123 (44%), Gaps = 29/123 (23%)

Query: 251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSG-------------E 297
            VA++GP+G GKST LNL+ G  TP  GE      + I   D H+              E
Sbjct: 27  IVAILGPSGAGKSTLLNLIAGFETPASGE------ILINGVD-HTASPPAERPVSMLFQE 79

Query: 298 H-LFPDDTPCEYL-------MKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARV 349
           + LF   T  + +       +KL     EK        GL  +   +P  +LSGGQ+ RV
Sbjct: 80  NNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-GELSGGQRQRV 138

Query: 350 ALA 352
           ALA
Sbjct: 139 ALA 141

Length = 231

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score = 53.4 bits (129), Expect = 7e-08
 Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 3/65 (4%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK---TLLVVSHDQS 66
           SGG R R++LARAL+ +P L++LDEP ++LD      L   +   K    T++V++H  S
Sbjct: 474 SGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS 533

Query: 67  FLNNI 71
            L ++
Sbjct: 534 ALASV 538

Length = 580

>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein

 Score = 53.8 bits (130), Expect = 8e-08
 Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 5/61 (8%)

Query: 182 LHDVTFGY-PGGKVLLEKVNFGLDME--SRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
           L ++TFGY P    L+E  NF L ++   RVALVG +G GKST   L+ G   P  G++L
Sbjct: 480 LRNITFGYSPLEPPLIE--NFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEIL 537

Query: 239 L 239
            
Sbjct: 538 F 538

This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710

>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

 Score = 52.2 bits (126), Expect = 8e-08
 Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 3/73 (4%)

Query: 9   FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA---VIWLDNYLQTWKKTLLVVSHDQ 65
           FSGG + R  + + L LEP L +LDEP + LD++A   V    N L+   + +L+++H Q
Sbjct: 145 FSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ 204

Query: 66  SFLNNICTDIIHL 78
             L+ I  D +H+
Sbjct: 205 RLLDYIKPDKVHV 217

Length = 251

>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system

 Score = 51.8 bits (125), Expect = 8e-08
 Identities = 21/50 (42%), Positives = 27/50 (54%)

Query: 188 GYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
           G  G    L+ V+F +    R+ L+G NG GKST L LL G   P+ G V
Sbjct: 30  GEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTV 79

The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score = 52.6 bits (127), Expect = 9e-08
 Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 21/136 (15%)

Query: 234 KGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--------KSPR 285
               +L+ VN  ++    V L+GP+G GKST L ++ G   P  GE+           P 
Sbjct: 14  GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPE 73

Query: 286 LR-IGK-FDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQ----LGMFGLPSYAHTI 336
            R I   F  ++   L+P  T  E   + +KL  +P  +  ++      + GL    +  
Sbjct: 74  KRGIAMVFQNYA---LYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRK 130

Query: 337 PIRDLSGGQKARVALA 352
           P   LSGGQ+ RVALA
Sbjct: 131 P-LQLSGGQRQRVALA 145

Length = 338

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 53.3 bits (129), Expect = 9e-08
 Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 31/115 (26%)

Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIG------KFDQHSGEHLFPDDTP 305
           + +VGPNGIGK+TF  LL G L P++GE+   P L+I       K D         D T 
Sbjct: 368 IGIVGPNGIGKTTFAKLLAGVLKPDEGEV--DPELKISYKPQYIKPDY--------DGTV 417

Query: 306 CEYLMKL---FNLPYEKSR--RQLGMFGLPSYAHTI---PIRDLSGGQKARVALA 352
            + L  +       Y KS   + L +         +    ++DLSGG+  RVA+A
Sbjct: 418 EDLLRSITDDLGSSYYKSEIIKPLQL-------ERLLDKNVKDLSGGELQRVAIA 465

Length = 590

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 51.4 bits (124), Expect = 1e-07
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 11/85 (12%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPT---NHLDLNAVIWLDNYLQTWKK----TLLV 60
             S G + R+ +ARAL  +P LLLLDEP    N  +   +      ++  +     T+L+
Sbjct: 149 NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELA---ELIRELRDRGGVTILL 205

Query: 61  VSHDQSFLNNICTDIIHLDM-KKLF 84
           + HD   +  +   I+ L+  + + 
Sbjct: 206 IEHDMKLVMGLADRIVVLNYGEVIA 230

Length = 250

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score = 51.3 bits (124), Expect = 1e-07
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 3/75 (4%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPT---NHLDLNAVIWLDNYLQTWKKTLLVVSHD 64
           E S G + R+ +ARAL  +P LLLLDEP    N  +   +  L   L+    T+L+V HD
Sbjct: 143 ELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHD 202

Query: 65  QSFLNNICTDIIHLD 79
              + ++   +  LD
Sbjct: 203 MDVVMSLADRVTVLD 217

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 18/66 (27%)

Query: 9   FSGGWRIRVSLARALFLEPTLLLLDEPTNHLD----------LNAVIWLDNYLQTWKKTL 58
            SGG R R++LARAL  +  +LLLDEPT HLD          L A            +T+
Sbjct: 472 LSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAA--------LSGRTV 523

Query: 59  LVVSHD 64
           ++++H 
Sbjct: 524 VLITHH 529

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 42/184 (22%), Positives = 74/184 (40%), Gaps = 44/184 (23%)

Query: 176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 235
           P P L + +V+  + G    ++ ++  +     V L+GP+G GK+T L ++ G   P+ G
Sbjct: 2   PKPALEIRNVSKSF-GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60

Query: 236 KVLL-EKVNFGLDMESR-VALVGPNGIGKSTF--LNLLKG---ELTPNKGELRKSPRLRI 288
           ++LL  +    +  E R + +V  +    + F  + + +     L   K   +   + R+
Sbjct: 61  EILLDGEDITDVPPEKRPIGMVFQSY---ALFPHMTVEENVAFGLKVRKKLKKAEIKARV 117

Query: 289 GKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKAR 348
                             E L  +               GL  +A   P   LSGGQ+ R
Sbjct: 118 -----------------EEALELV---------------GLEGFADRKP-HQLSGGQQQR 144

Query: 349 VALA 352
           VALA
Sbjct: 145 VALA 148

Length = 352

>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 43/181 (23%), Positives = 74/181 (40%), Gaps = 52/181 (28%)

Query: 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
           V+G++D +     G++ +              ++G +G GKST + LL   + P +G++L
Sbjct: 41  VVGVNDASLDVEEGEIFV--------------IMGLSGSGKSTLVRLLNRLIEPTRGEIL 86

Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH 298
           ++    G D+                           +  ELR+  R +I    Q     
Sbjct: 87  VD----GKDI------------------------AKLSAAELRELRRKKISMVFQSFA-- 116

Query: 299 LFPDDTPCE---YLMKLFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVAL 351
           L P  T  E   + +++  +P     E++   L + GL  YA   P  +LSGG + RV L
Sbjct: 117 LLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP-NELSGGMQQRVGL 175

Query: 352 A 352
           A
Sbjct: 176 A 176

Length = 386

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 29/76 (38%), Positives = 36/76 (47%), Gaps = 10/76 (13%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK-------TLLV 60
           E SGG R R+ +ARAL L P L++ DEP + LD   V      L   K        T L 
Sbjct: 109 ELSGGQRQRIGIARALALNPKLIVADEPVSALD---VSVQAQILNLLKDLQEELGLTYLF 165

Query: 61  VSHDQSFLNNICTDII 76
           +SHD S +  I   I 
Sbjct: 166 ISHDLSVVRYISDRIA 181

Length = 268

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 5/77 (6%)

Query: 184 DVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKV 242
           +VTF YPG G  +L  ++  +     VALVGP+G GKST +NL+      + G++L++  
Sbjct: 5   NVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGH 64

Query: 243 N---FGL-DMESRVALV 255
           +   + L  +  ++ LV
Sbjct: 65  DVRDYTLASLRRQIGLV 81

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 27/138 (19%)

Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL--RKSP-------- 284
              +L  ++  +     +A+ GP+G GKST L ++   ++P  G L              
Sbjct: 15  DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEA 74

Query: 285 -RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ---------LGMFGLPSYAH 334
            R ++    Q     LF  DT  + L+     P++   R+         L  F LP    
Sbjct: 75  YRQQVSYCAQTPA--LFG-DTVEDNLI----FPWQIRNRRPDRAAALDLLARFALPDSIL 127

Query: 335 TIPIRDLSGGQKARVALA 352
           T  I +LSGG+K R+AL 
Sbjct: 128 TKNITELSGGEKQRIALI 145

Length = 223

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD----LNAVIWLDNYLQTWKKTL 58
           ++  K+ SGG R RV+L RA+  EP + L+DEP ++LD    +     L    Q    T 
Sbjct: 125 DRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTT 184

Query: 59  LVVSHDQ 65
           + V+HDQ
Sbjct: 185 IYVTHDQ 191

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 39/126 (30%), Positives = 59/126 (46%), Gaps = 13/126 (10%)

Query: 242 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL-------RKSPRLRIGKFDQH 294
           ++F +D    + + G NG GK+T L +L G L    G++        +  R R   +  H
Sbjct: 30  LDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGH 89

Query: 295 SGEHLFPDDTPCEYLMKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVA 350
               L  D +  E L  L  L   ++++     L + GL  Y  T+ +R LS GQK R+A
Sbjct: 90  LPG-LKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTL-VRQLSAGQKKRLA 147

Query: 351 LAELTL 356
           LA L L
Sbjct: 148 LARLWL 153

Length = 214

>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 28/62 (45%), Positives = 36/62 (58%), Gaps = 4/62 (6%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVI----WLDNYLQTWKKTLLVVSH 63
           + SGG + RV+LARAL +EP +LLLDEP   LD         WL    +  K T + V+H
Sbjct: 136 QLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTH 195

Query: 64  DQ 65
           DQ
Sbjct: 196 DQ 197

Length = 353

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 6/86 (6%)

Query: 6   TKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD-LNAVIWLDNYL----QTWKKTLLV 60
               SGG + RV++ARAL  +P ++L DEP   LD  +A   +D  L    Q    T++V
Sbjct: 145 ASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMD-ILKDINQEDGITVIV 203

Query: 61  VSHDQSFLNNICTDIIHLDMKKLFYY 86
             H           II L   ++ + 
Sbjct: 204 NLHQVDLAKKYADRIIGLKAGRIVFD 229

Length = 258

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 11/98 (11%)

Query: 9   FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLN--AVIWLDNYLQTWKKTLLVVSHDQS 66
            SGG R R+++ARAL   P +L+LDE T+ LD    A+I          +T L+++H  S
Sbjct: 466 LSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLS 525

Query: 67  FLNNICTDIIHLDMKKLFYYKGNFT-------LFKKMY 97
            + N    II LD  ++    G          L+ ++Y
Sbjct: 526 TIKN-ADRIIVLDNGRIVER-GTHEELLAKGGLYARLY 561

Length = 567

>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 36/128 (28%), Positives = 49/128 (38%), Gaps = 37/128 (28%)

Query: 253 ALVGPNGIGKSTFLNLLKGELTPNKGEL-----------RKSPRLRIGKFDQHSGEHLFP 301
            L+GPNG GKST L LL G L P+ G +           R++   R+   +Q S      
Sbjct: 31  GLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDS-----D 85

Query: 302 DDTPCEYL--MKLFNLPY------------EKSRRQLGMFGLPSYAHTIPIRD---LSGG 344
              P      + L  +P+                R L    L   A     RD   LSGG
Sbjct: 86  TAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLAD----RDMSTLSGG 141

Query: 345 QKARVALA 352
           ++ RV +A
Sbjct: 142 ERQRVHVA 149

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 52.1 bits (126), Expect = 2e-07
 Identities = 18/32 (56%), Positives = 24/32 (75%)

Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
           + +VGPNGIGK+TF  LL G L P++G+V  E
Sbjct: 368 IGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE 399

Length = 590

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 3/74 (4%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK---KTLLVVSHD 64
           EFS G + +V++ARAL  +P++L+LDEPT+ LD+       ++++  K   + ++  SH 
Sbjct: 133 EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHI 192

Query: 65  QSFLNNICTDIIHL 78
              +  +C  +I L
Sbjct: 193 MQEVEALCDRVIVL 206

Length = 245

>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 52.2 bits (126), Expect = 2e-07
 Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 6/53 (11%)

Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL------KGELTPNKGELR 281
           GK L   +NF L    R+ALVGP+G GK++ LN L      +G L  N  ELR
Sbjct: 362 GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELR 414

Length = 588

>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 52.2 bits (126), Expect = 2e-07
 Identities = 33/77 (42%), Positives = 43/77 (55%), Gaps = 13/77 (16%)

Query: 190 PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFG---- 245
           P GK L   +NF L    R+ALVGP+G GK++ LN L G L P +G +   K+N G    
Sbjct: 360 PDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSL---KIN-GIELR 414

Query: 246 -LDMES---RVALVGPN 258
            LD ES    ++ VG N
Sbjct: 415 ELDPESWRKHLSWVGQN 431

Length = 588

>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 2   QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLL 59
           Q K   + S G+R RV LA+AL  +P +L+LDEPT  LD N ++ + N ++     KT++
Sbjct: 127 QHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTII 186

Query: 60  VVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMK 119
           + +H    +  IC  +I ++  K+               ++  E+  E ++  +    ++
Sbjct: 187 LSTHIMQEVEAICDRVIIINKGKIV-ADKKLDELSAANKKQVIEVEFEEQIDLQLFETLE 245

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301

>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 30/61 (49%), Positives = 39/61 (63%), Gaps = 4/61 (6%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD-LNAVIWLDNYLQ---TWKKTLLVVSH 63
           E SGG R RV++ARAL  +P+L+L DEPT +LD  NA I  D  L+       + LVV+H
Sbjct: 141 ELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTH 200

Query: 64  D 64
           D
Sbjct: 201 D 201

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 49/176 (27%), Positives = 71/176 (40%), Gaps = 39/176 (22%)

Query: 184 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN 243
           D+ + YP G   L+ +NF  +    VAL+GPNG GKST      G L P  G+V      
Sbjct: 6   DLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV------ 59

Query: 244 FGLDMESRVALVGPNGIGKSTFLNLLKGE-LTPNKGELRKSPRLRIGKFDQHSGEHLFPD 302
                                   L+KGE +  +K  L +  R  +G   Q+  + LF  
Sbjct: 60  ------------------------LIKGEPIKYDKKSLLEV-RKTVGIVFQNPDDQLFAP 94

Query: 303 DTPCEYLMKLFNLPY------EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
               +      NL        ++ +  L   G+  + +  P   LSGGQK RVA+A
Sbjct: 95  TVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPP-HHLSGGQKKRVAIA 149

Length = 275

>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 52/185 (28%), Positives = 75/185 (40%), Gaps = 41/185 (22%)

Query: 178 PVLGLHDVTFGYPGGKVL---LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK 234
            +L   ++   Y  G V    L  V+F +     +A+VG +G GKST L+LL G  TP  
Sbjct: 4   ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTS 63

Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQH 294
           G V+                      G+   ++ L    +  K ELR      I +F   
Sbjct: 64  GDVIFN--------------------GQP--MSKLS---SAAKAELRNQKLGFIYQF--- 95

Query: 295 SGEHLFPDDTPCEYL-MKLF------NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKA 347
              HL PD T  E + M L            ++   L   GL   A+  P  +LSGG++ 
Sbjct: 96  --HHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRP-SELSGGERQ 152

Query: 348 RVALA 352
           RVA+A
Sbjct: 153 RVAIA 157

Length = 233

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 43/130 (33%), Positives = 60/130 (46%), Gaps = 19/130 (14%)

Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL--------RKSPRLR-IG 289
           L+ VN  +   S VAL+GP+G GKST L ++ G   P+ G +        R   R R IG
Sbjct: 16  LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIG 75

Query: 290 KFDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLS 342
              QH    LF   T  +   + +++   P  K + +    L +  L       P   LS
Sbjct: 76  FVFQHYA--LFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYP-NQLS 132

Query: 343 GGQKARVALA 352
           GGQ+ RVALA
Sbjct: 133 GGQRQRVALA 142

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 43/148 (29%), Positives = 60/148 (40%), Gaps = 27/148 (18%)

Query: 232 PNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR---------- 281
           P +    L+  N  L    +VA++G +G GKST L LL G   P +G +           
Sbjct: 347 PGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLD 406

Query: 282 -KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNL--PYEKSRRQLGMFGLPSYAHTIPI 338
            ++ R  I    Q    HLF   T  + L +L N     E+    L   GL     + P 
Sbjct: 407 EQALRETISVLTQRV--HLF-SGTLRDNL-RLANPDASDEELWAALQQVGLEKLLESAPD 462

Query: 339 ----------RDLSGGQKARVALAELTL 356
                     R LSGG++ R+ALA   L
Sbjct: 463 GLNTWLGEGGRRLSGGERRRLALARALL 490

Length = 573

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score = 50.3 bits (121), Expect = 3e-07
 Identities = 20/33 (60%), Positives = 24/33 (72%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
             SGG + R+ LARAL  EP +LLLDEPT+ LD
Sbjct: 141 GLSGGQQQRLCLARALANEPEVLLLDEPTSALD 173

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score = 50.6 bits (121), Expect = 3e-07
 Identities = 29/65 (44%), Positives = 36/65 (55%), Gaps = 8/65 (12%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD------LNAVIWLDNYLQTWKKTLLVV 61
           + SGG R RV+LARAL +EP +LLLDEP   LD      L +  WL         T + V
Sbjct: 130 QLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRS--WLRKLHDEVHVTTVFV 187

Query: 62  SHDQS 66
           +HDQ 
Sbjct: 188 THDQE 192

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 219 KSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 278
           K     L KG     +   L + ++F +    RV ++G NG GKST L L+ G   P  G
Sbjct: 24  KKRLKGLAKGGRKVAEFWAL-KDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSG 82

Query: 279 ELR 281
           +++
Sbjct: 83  KVK 85

Length = 249

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score = 50.2 bits (121), Expect = 3e-07
 Identities = 37/150 (24%), Positives = 52/150 (34%), Gaps = 53/150 (35%)

Query: 232 PNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKF 291
             +    L+ +N  +     VA+VGP G GKS+ L+ L GEL    G +       I   
Sbjct: 14  EQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG--SIAYV 71

Query: 292 DQHSGEHLFPDDTPCEYLMK-------LFNLPYEKSRRQLGMFGLPSYAHTI-------- 336
            Q           P  ++         LF  P+++ R          Y   I        
Sbjct: 72  SQ----------EP--WIQNGTIRENILFGKPFDEER----------YEKVIKACALEPD 109

Query: 337 ----PIRD----------LSGGQKARVALA 352
               P  D          LSGGQK R++LA
Sbjct: 110 LEILPDGDLTEIGEKGINLSGGQKQRISLA 139

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score = 50.1 bits (121), Expect = 3e-07
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
           L + ++  GY G   +L  V+  +     VAL+G NG GK+T L  + G L P  G +  
Sbjct: 1   LEVENLNAGY-GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRF 59

Query: 240 E 240
           +
Sbjct: 60  D 60

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score = 49.1 bits (118), Expect = 4e-07
 Identities = 33/128 (25%), Positives = 50/128 (39%), Gaps = 37/128 (28%)

Query: 232 PNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR----KSPRLR 287
           P     +L  V+F ++    +A++GP+G GKST   L+ G L P  G +R       +  
Sbjct: 11  PGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWD 70

Query: 288 IGKFDQHSGEHLFPDDTPCEYLM---KLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGG 344
             +   H G           YL    +LF                   + +I    LSGG
Sbjct: 71  PNELGDHVG-----------YLPQDDELF-------------------SGSIAENILSGG 100

Query: 345 QKARVALA 352
           Q+ R+ LA
Sbjct: 101 QRQRLGLA 108

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 13/99 (13%)

Query: 9   FSGGWRIRVSLARALFLEPTLLLLDEPTNHLD----LNAVIWLDNYLQTWKKTLLVVSHD 64
            SGG R R++LARAL  +  L LLDEPT  LD       +  L  + +   KTLL+V+H 
Sbjct: 475 LSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE--GKTLLMVTHR 532

Query: 65  QSFLNNICTDIIHLDMKKLFYYKGNFTL------FKKMY 97
              L      II LD  K+     +  L      +K++Y
Sbjct: 533 LRGL-ERMDRIIVLDNGKIIEEGTHAELLANNGRYKRLY 570

Length = 573

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 50.5 bits (121), Expect = 4e-07
 Identities = 30/67 (44%), Positives = 39/67 (58%), Gaps = 6/67 (8%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA-----VIWLDNYLQTWKKT 57
            K   + SGG R RV +ARAL +EP LLLLDEP   LD         + LD + +T K+ 
Sbjct: 127 HKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQV 186

Query: 58  LLVVSHD 64
           LL ++HD
Sbjct: 187 LL-ITHD 192

Length = 259

>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 5/81 (6%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK----TLLVVSH 63
             SGG + RV++ARAL   P L+L DEPT  LD  +   +   +Q   +    T+L+V+H
Sbjct: 141 NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTH 200

Query: 64  DQSFLNNICTDIIHLDMKKLF 84
           D   L ++   I+H++  KL 
Sbjct: 201 DNRIL-DVADRIVHMEDGKLL 220

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score = 49.8 bits (119), Expect = 4e-07
 Identities = 50/177 (28%), Positives = 75/177 (42%), Gaps = 38/177 (21%)

Query: 184 DVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241
           +VTF YP     ++L+ V+F L      ALVGP+G GKST + LL+    P  G+VLL+ 
Sbjct: 16  NVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDG 75

Query: 242 VNFGL----DMESRVALVG--PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHS 295
                     + S+V+LVG  P    +S   N+  G        L+      + +  Q +
Sbjct: 76  KPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYG--------LQSCSFECVKEAAQKA 127

Query: 296 GEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
             H F        + +L +    +   +                 LSGGQK RVA+A
Sbjct: 128 HAHSF--------ISELASGYDTEVGEKGSQ--------------LSGGQKQRVAIA 162

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 51.3 bits (123), Expect = 5e-07
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 4/61 (6%)

Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
           + +V+F Y    ++L+ +N  L + SR  VALVG  G GKST  +LL G     +G++ L
Sbjct: 343 IDNVSFAYRDDNLVLQNIN--LSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRL 400

Query: 240 E 240
           +
Sbjct: 401 D 401

Length = 592

>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system

 Score = 50.3 bits (121), Expect = 5e-07
 Identities = 43/182 (23%), Positives = 73/182 (40%), Gaps = 52/182 (28%)

Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
             +G++DV+     G++ +              ++G +G GKST L  +   + P  GKV
Sbjct: 36  QTVGVNDVSLDVREGEIFV--------------IMGLSGSGKSTLLRCINRLIEPTSGKV 81

Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGE 297
           L++    G D+                           ++ ELR+  R +I    Q    
Sbjct: 82  LID----GQDI------------------------AAMSRKELRELRRKKISMVFQSFA- 112

Query: 298 HLFPDDTPCE---YLMKLFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVA 350
            L P  T  E   + +++  +P     E++   L + GL  + H  P  +LSGG + RV 
Sbjct: 113 -LLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-DELSGGMQQRVG 170

Query: 351 LA 352
           LA
Sbjct: 171 LA 172

This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269

>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed

 Score = 50.1 bits (120), Expect = 5e-07
 Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 11/126 (8%)

Query: 236 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHS 295
           + +L  V+  L     + L+GPNG GKST + ++ G + P++G ++++ +LRIG   Q  
Sbjct: 17  RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQ-- 74

Query: 296 GEHLFPDDT---PCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTI--PIRDLSGGQKARVA 350
              L+ D T        ++L   P  K    L         H I  P++ LSGG+  RV 
Sbjct: 75  --KLYLDTTLPLTVNRFLRL--RPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVL 130

Query: 351 LAELTL 356
           LA   L
Sbjct: 131 LARALL 136

Length = 251

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 49.8 bits (120), Expect = 5e-07
 Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
           P+L + +++ GY G    L  V+  ++    VAL+G NG GK+T L  + G + P  G++
Sbjct: 2   PMLEVENLSAGY-GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRI 60

Query: 238 LLE 240
           + +
Sbjct: 61  IFD 63

Length = 237

>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed

 Score = 49.8 bits (119), Expect = 5e-07
 Identities = 33/102 (32%), Positives = 57/102 (55%), Gaps = 3/102 (2%)

Query: 9   FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLD---NYLQTWKKTLLVVSHDQ 65
           FSGG + R  + +   LEP L +LDE  + LD++A+  +    N L+  K++ ++V+H Q
Sbjct: 146 FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQ 205

Query: 66  SFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKE 107
             L+ I  D +H+  +      G+FTL K++  Q    LT++
Sbjct: 206 RILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQGYGWLTEQ 247

Length = 248

>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter

 Score = 49.3 bits (118), Expect = 6e-07
 Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD---LNAVIWLDNYLQTWKKTLLVVSHD 64
           E SGG + RV++ARA+   PT+L+ DEPT +LD      ++ L   +     T++V +H 
Sbjct: 136 ELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHA 195

Query: 65  QSFLNN 70
           +  ++ 
Sbjct: 196 KELVDT 201

FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score = 49.5 bits (119), Expect = 6e-07
 Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 13/82 (15%)

Query: 233 NKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL-----------R 281
           ++ K +L+ +NF +     VA+VGP G GK+T +NLL     P KG++           R
Sbjct: 13  DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISR 72

Query: 282 KSPRLRIGKFDQHSGEHLFPDD 303
           KS R  IG   Q +   LF   
Sbjct: 73  KSLRSMIGVVLQDT--FLFSGT 92

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional

 Score = 49.8 bits (119), Expect = 6e-07
 Identities = 28/61 (45%), Positives = 37/61 (60%), Gaps = 4/61 (6%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDL---NAVIWLDNYLQTWKKT-LLVVSH 63
           E SGG R RV++ARAL   P L+L DEPT +LD    +++  L   L   + T  LVV+H
Sbjct: 145 ELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTH 204

Query: 64  D 64
           D
Sbjct: 205 D 205

Length = 233

>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 15/80 (18%)

Query: 7   KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTL----LVVS 62
           ++ SGG   RV LARAL   P LL+LDEPT  +D+N  + L + +   ++ L    L+VS
Sbjct: 119 QKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVS 178

Query: 63  HDQSFLNNICTDIIHLDMKK 82
           HD           +HL M K
Sbjct: 179 HD-----------LHLVMAK 187

Length = 251

>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 29/65 (44%), Positives = 36/65 (55%), Gaps = 8/65 (12%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVI------WLDNYLQTWKKTLLVV 61
           + SGG R RV+LARAL +EP +LLLDEP   LD  A +      WL         T + V
Sbjct: 136 QLSGGQRQRVALARALAVEPKVLLLDEPFGALD--AKVRKELRRWLRRLHDELHVTTVFV 193

Query: 62  SHDQS 66
           +HDQ 
Sbjct: 194 THDQE 198

Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 21/37 (56%), Positives = 25/37 (67%)

Query: 7   KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA 43
           +E +GG R RV +ARAL   P LLLLDEPT  LD  +
Sbjct: 131 RELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPAS 167

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 4/61 (6%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT-WKK---TLLVVSHDQ 65
           SGG + RV+LARAL   P LLLLDEP   LD    I + + +++ W++   T+L+V+HD 
Sbjct: 135 SGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDV 194

Query: 66  S 66
           S
Sbjct: 195 S 195

Length = 257

>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 49.6 bits (118), Expect = 6e-07
 Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 12/111 (10%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLV 60
           ++S    SGG + R+ +ARA+ + P++LL+DEP + LD  +   ++  +   KK  T+++
Sbjct: 141 KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVI 200

Query: 61  VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF---KKMYVQKRKELTKEY 108
           V+H+             +  K  F+Y G    +   KK++    KE T+ Y
Sbjct: 201 VTHNMQ-------QAARVSDKTAFFYMGEMVEYDDTKKIFTNPEKEATQNY 244

Length = 250

>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 33/104 (31%), Positives = 60/104 (57%), Gaps = 12/104 (11%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHDQSF 67
           SGG + R+ +ARAL +EP +LLLDEPT+ LD  A   ++  +Q  KK  T+++V+H+   
Sbjct: 146 SGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQ 205

Query: 68  LNNICTDIIHLDMKKLFYYKGNFTLF---KKMYVQKRKELTKEY 108
              I +D      +  F+Y G    +   ++++   +++ T++Y
Sbjct: 206 AARI-SD------RTAFFYDGELVEYGPTEQIFTNPKEKRTEDY 242

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247

>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 49.1 bits (117), Expect = 7e-07
 Identities = 50/138 (36%), Positives = 59/138 (42%), Gaps = 17/138 (12%)

Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN---KGELR-KSPRLRIGK 290
           G  LL  VNF +     V L+GP+G GKST L+ + G L       GEL     RL +  
Sbjct: 14  GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLP 73

Query: 291 FDQHSGEHLFPDDTPCEYLMK----LFNLPYE---KSRRQ-----LGMFGLPSYAHTIPI 338
             Q     LF D     +L      LF LP      +RR      L   GL    H  P 
Sbjct: 74  AAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDP- 132

Query: 339 RDLSGGQKARVALAELTL 356
             LSGGQ+ARVAL    L
Sbjct: 133 ATLSGGQRARVALLRALL 150

Length = 213

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 49.2 bits (118), Expect = 8e-07
 Identities = 37/138 (26%), Positives = 55/138 (39%), Gaps = 19/138 (13%)

Query: 233 NKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR----KSPRLRI 288
                 L  V+  ++    + +VG +G GKST   LL G   P+ G +          + 
Sbjct: 17  KFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKR 76

Query: 289 GKFD--------QHSGEHLFPDDTPCEYLMK-LFNLPYEKSRRQ----LGMFGLP-SYAH 334
            K          Q     L P  T    L + L      KS+++    L   GLP S+  
Sbjct: 77  AKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLD 136

Query: 335 TIPIRDLSGGQKARVALA 352
             P  +LSGGQ+ R+A+A
Sbjct: 137 RRP-HELSGGQRQRIAIA 153

Length = 252

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 49.3 bits (118), Expect = 8e-07
 Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 21/135 (15%)

Query: 236 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--------KSPRL- 286
              L+ ++F ++    V  +GPNG GK+T L +L G L P  GE+R        +  +  
Sbjct: 34  VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFL 93

Query: 287 -RIG-KFDQHSGEHLFPDDTPCE--YLMK-LFNLPYEKSRRQLG----MFGLPSYAHTIP 337
            RIG  F Q +   L+ D    +  YL+  +++LP  + +++L     +  L     T P
Sbjct: 94  RRIGVVFGQKT--QLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDT-P 150

Query: 338 IRDLSGGQKARVALA 352
           +R LS GQ+ R  +A
Sbjct: 151 VRQLSLGQRMRAEIA 165

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group

 Score = 48.8 bits (117), Expect = 8e-07
 Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 4/80 (5%)

Query: 2   QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDL---NAVIWLDNYLQTWKKTL 58
            ++   E SGG + RV+LARA+   P L+L DEPT  LD    + V+ L   L    KT+
Sbjct: 128 LKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTI 187

Query: 59  LVVSHDQSFLNNICTDIIHL 78
           ++V+HD   +      +I L
Sbjct: 188 IIVTHDPE-VAKQADRVIEL 206

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206

>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 49.4 bits (118), Expect = 8e-07
 Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 3/73 (4%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLD---LNAVIWLDNYLQTWKKTLLVVSHDQS 66
           SGG + RV++ARAL +EP +LL DEPT  LD      ++ +   L     T ++V+H+  
Sbjct: 143 SGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVE 202

Query: 67  FLNNICTDIIHLD 79
                 + +++++
Sbjct: 203 VARKTASRVVYME 215

Length = 242

>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

 Score = 50.0 bits (120), Expect = 8e-07
 Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK----TLLVVSHDQ 65
           SGG + RV+LARAL   P LLLLDEP + LD      L   ++  ++    T ++V+HDQ
Sbjct: 136 SGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ 195

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 50.3 bits (121), Expect = 9e-07
 Identities = 23/58 (39%), Positives = 33/58 (56%)

Query: 236 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQ 293
           K L E ++      +R  L+G NG GKSTF+ +L G+L P+ G +   P  R+GK  Q
Sbjct: 14  KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQ 71

Length = 530

>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

 Score = 49.2 bits (118), Expect = 9e-07
 Identities = 18/51 (35%), Positives = 25/51 (49%)

Query: 187 FGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
                    L+ ++F +    RV ++G NG GKST L L+ G   P  GKV
Sbjct: 34  GRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV 84

Length = 249

>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional

 Score = 50.4 bits (121), Expect = 9e-07
 Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 169 FPNPPYLPP-PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK 227
           FP P   P    L L +VTF Y      +  +N  +     + L+G NG GKST   LL 
Sbjct: 311 FPRPQAFPDWQTLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLT 370

Query: 228 GELTPNKGKVLLE 240
           G   P  G++LL+
Sbjct: 371 GLYQPQSGEILLD 383

Length = 547

>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional

 Score = 49.7 bits (119), Expect = 9e-07
 Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 4/70 (5%)

Query: 1   MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYL----QTWKK 56
            +++   + SGG + RV+LARAL L+P +LL DEP ++LD N    +   +    Q +  
Sbjct: 129 FEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNI 188

Query: 57  TLLVVSHDQS 66
           T L V+HDQS
Sbjct: 189 TSLYVTHDQS 198

Length = 351

>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein

 Score = 50.3 bits (120), Expect = 9e-07
 Identities = 19/62 (30%), Positives = 33/62 (53%)

Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241
              +TF +      +  V+F       VA+VGP G GK+T +NLL+    P  G++L++ 
Sbjct: 337 FRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDG 396

Query: 242 VN 243
           ++
Sbjct: 397 ID 398

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585

>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit

 Score = 48.7 bits (116), Expect = 9e-07
 Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK---TLLVVSHD 64
           E SGG R RV +ARAL   P++LLLDEP   LD+     L             +L+ +HD
Sbjct: 113 ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHD 172

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223

>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 21/40 (52%), Positives = 25/40 (62%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLN 42
           ++     SGG R RV LARAL     +LLLDEPT  LD+N
Sbjct: 134 DRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDIN 173

Length = 402

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 4/85 (4%)

Query: 7   KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD-LNAVIWLDNYLQTWKK---TLLVVS 62
            + SGG + RV++ARAL  +P L+L DEP   LD   +   +D   +  K+   T+++  
Sbjct: 144 DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINL 203

Query: 63  HDQSFLNNICTDIIHLDMKKLFYYK 87
           H           I+ L   ++ +  
Sbjct: 204 HQVDLAKKYADRIVGLKAGEIVFDG 228

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system

 Score = 48.7 bits (117), Expect = 1e-06
 Identities = 18/42 (42%), Positives = 25/42 (59%)

Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 280
           L+ V+F +    R+ L+G NG GKST L LL G   P+ G +
Sbjct: 38  LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTV 79

The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224

>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 4/61 (6%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD-LNAVIWLDNYLQ---TWKKTLLVVSH 63
           E SGG + RV LARAL  +P +LL+DE  + LD L      D  L+     KKT++ ++H
Sbjct: 164 ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITH 223

Query: 64  D 64
           D
Sbjct: 224 D 224

Length = 386

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 2/56 (3%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSH 63
           SGG + RV++ARAL   P +L+LDE T+ LD  +   +   L  W  ++T+LV++H
Sbjct: 152 SGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAH 207

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 5/80 (6%)

Query: 184 DVTFGYPGGKVL-LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKV 242
           +VTF YPG +V  L  +NF +     VALVG +G GKST  NLL      ++G++LL+  
Sbjct: 346 NVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGH 405

Query: 243 N---FGL-DMESRVALVGPN 258
           +   + L  + ++VALV  N
Sbjct: 406 DLRDYTLASLRNQVALVSQN 425

Length = 582

>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 3/73 (4%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLD---LNAVIWLDNYLQTWKKTLLVVSHDQS 66
           SGG + RV++ARAL +EP +LL DEPT  LD      ++ +   L     T ++V+H+  
Sbjct: 143 SGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE 202

Query: 67  FLNNICTDIIHLD 79
                 + +++++
Sbjct: 203 VARKTASRVVYME 215

Length = 242

>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 6/81 (7%)

Query: 1   MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNY---LQTWKKT 57
           + ++   + SGG R R  LA  L  +  ++LLDEPT +LD+N  + L      L T  KT
Sbjct: 131 LADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKT 190

Query: 58  LLVVSHDQSFLNNICTDIIHL 78
           ++ V HD   LN       HL
Sbjct: 191 VVTVLHD---LNQASRYCDHL 208

Length = 255

>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 3/73 (4%)

Query: 9   FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK---KTLLVVSHDQ 65
           FSGG + R  + +   LEP L +LDE  + LD++A+  +   +   +   ++ L+++H Q
Sbjct: 145 FSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQ 204

Query: 66  SFLNNICTDIIHL 78
             LN I  D +H+
Sbjct: 205 RLLNYIKPDYVHV 217

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243

>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 3/75 (4%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD---LNAVIWLDNYLQTWKKTLLVVSHD 64
           E SGG + RV++ARAL ++P L+L DEPT+ LD    + V+ +   L     T+++V+H+
Sbjct: 136 ELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHE 195

Query: 65  QSFLNNICTDIIHLD 79
             F   + + +I +D
Sbjct: 196 IGFAEKVASRLIFID 210

Length = 240

>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 10/75 (13%)

Query: 9   FSGGWRIRVSLARALFLEPTLLLLDEPTNHLD-------LNAVIWLDNYLQTWKKTLLVV 61
           FSGG R R+++ARAL L+P +++ DEP + LD       LN ++ L   L     + + +
Sbjct: 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGL---SYVFI 211

Query: 62  SHDQSFLNNICTDII 76
           SHD S + +I  +++
Sbjct: 212 SHDLSVVEHIADEVM 226

Length = 327

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 13/83 (15%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD--LNAVIWLDNYLQTWKK------TLL 59
           + SGG + RV++ARA+   P LLL DEPT +LD  L+  I     L   K+      T++
Sbjct: 137 QLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERI-----LDLLKRLNKRGTTVI 191

Query: 60  VVSHDQSFLNNICTDIIHLDMKK 82
           V +HD S ++ +   +I LD  +
Sbjct: 192 VATHDLSLVDRVAHRVIILDDGR 214

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
           L L +V   +   +VL + VN  ++    V L+GP+G GKST L ++ G   P  G++L+
Sbjct: 4   LELKNVRKSFGSFEVLKD-VNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILI 62

Length = 338

>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 18/131 (13%)

Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR-----------KSPRLR 287
           L+ ++  +   S+ AL+GPNG GKST L  L G   P +G ++           K  R +
Sbjct: 21  LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSK 80

Query: 288 IGKFDQHSGEHLFPDDTPCEYLMKLFNL---PYEKSRR---QLGMFGLPSYAHTIPIRDL 341
           +G   Q   + +F      +      N+     E  RR    L    +  +    P   L
Sbjct: 81  VGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYH-L 139

Query: 342 SGGQKARVALA 352
           S GQK RVA+A
Sbjct: 140 SYGQKKRVAIA 150

Length = 274

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 6/87 (6%)

Query: 176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 235
             P++ L +V+     GK +L  +++ ++     A+VGPNG GK+T L+LL GE  P+ G
Sbjct: 28  NEPLIELKNVSVRR-NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSG 86

Query: 236 KVLLEKVNFG-----LDMESRVALVGP 257
            V L    FG      ++  R+ LV  
Sbjct: 87  DVTLLGRRFGKGETIFELRKRIGLVSS 113

Length = 257

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 45/182 (24%), Positives = 73/182 (40%), Gaps = 43/182 (23%)

Query: 182 LHDVTFGYPGGK----VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
           L +V+  +          L+ V+  +       ++G +G GKST L L+     P  G V
Sbjct: 4   LENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSV 63

Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGE 297
            ++  +         AL                     ++ ELR+  R +IG   QH   
Sbjct: 64  FVDGQDLT-------AL---------------------SEAELRQL-RQKIGMIFQHF-- 92

Query: 298 HLFPDDTPCE---YLMKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVA 350
           +L    T  E   + ++L  +P  + +++    L + GL   A   P   LSGGQK RVA
Sbjct: 93  NLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-AQLSGGQKQRVA 151

Query: 351 LA 352
           +A
Sbjct: 152 IA 153

Length = 339

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 175 LPPP--VLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT 231
           LP P   L +  +T   PG  K +L+ ++F L     + ++GP+G GKST   LL G   
Sbjct: 328 LPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP 387

Query: 232 PNKGKVLL 239
           P  G V L
Sbjct: 388 PTSGSVRL 395

Length = 580

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 49.4 bits (119), Expect = 2e-06
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 14/54 (25%)

Query: 231 TPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP 284
            P +GKV                ++GPNGIGK+T + +L GEL PN G+  + P
Sbjct: 95  IPKEGKV--------------TGILGPNGIGKTTAVKILSGELIPNLGDYEEEP 134

Length = 590

>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 40/140 (28%), Positives = 55/140 (39%), Gaps = 35/140 (25%)

Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL--------RKSPRLR-IG 289
           L+ V+  +     VAL+GP+G GK+T L L+ G   P+ G +            + R +G
Sbjct: 18  LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVG 77

Query: 290 KFDQHSGEHLFPDDT-----------------PCEYLMKLFNLPYEKSRRQLGMFGLPSY 332
              QH    LF   T                 P E  ++       K    L +  L   
Sbjct: 78  FVFQHYA--LFRHMTVFDNVAFGLRVKPRSERPPEAEIR------AKVHELLKLVQLDWL 129

Query: 333 AHTIPIRDLSGGQKARVALA 352
           A   P   LSGGQ+ RVALA
Sbjct: 130 ADRYP-AQLSGGQRQRVALA 148

Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 4/86 (4%)

Query: 4   KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK----TLL 59
              ++ S G R+R  +A AL  EP +L LDEPT  LD+ A   + N+L+ + +    T+L
Sbjct: 149 TPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVL 208

Query: 60  VVSHDQSFLNNICTDIIHLDMKKLFY 85
           + SH    +  +   ++ +D  +L Y
Sbjct: 209 LTSHYMKDIEALARRVLVIDKGRLLY 234

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 20/135 (14%)

Query: 237 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR------KSPRLRIGK 290
            +L  ++  +D    V ++GP+G GKST L  +        G+L         P++    
Sbjct: 15  QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERL 74

Query: 291 FDQHSGE-----HLFPDDTPCEYLM----KLFNLPYEKSRRQ----LGMFGLPSYAHTIP 337
             Q +G      +LFP  T  E +M    ++     E++ +Q    L   GL   AH  P
Sbjct: 75  IRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYP 134

Query: 338 IRDLSGGQKARVALA 352
             +LSGGQ+ RVA+A
Sbjct: 135 -SELSGGQQQRVAIA 148

Length = 240

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 14/91 (15%)

Query: 161 REYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESR-------VALVG 213
           R   ++F        PP      D    YP  K      +F L++E         + ++G
Sbjct: 322 RPEEIEFEEK-----PPRDDKARDTLVEYPDLKKTYG--DFKLEVEEGEIYDGEVIGILG 374

Query: 214 PNGIGKSTFLNLLKGELTPNKGKVLLEKVNF 244
           PNGIGK+TF+ LL G + P++G     KV++
Sbjct: 375 PNGIGKTTFVKLLAGVIKPDEGSEEDLKVSY 405

Length = 591

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 24/54 (44%), Positives = 27/54 (50%), Gaps = 14/54 (25%)

Query: 231 TPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP 284
           TP  GKV              V ++GPNGIGKST L +L GEL PN G     P
Sbjct: 96  TPRPGKV--------------VGILGPNGIGKSTALKILAGELKPNLGRYEDPP 135

Length = 591

>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 185 VTFGY-PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
           VTF Y P G ++L+ V+  ++    VA+VGP+G GKST L LL G  TP  G V 
Sbjct: 457 VTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVF 511

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686

>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 2   QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD-LNAVIWLDNYLQ---TWKKT 57
            ++   E SGG + RV LARA   E  +LL+DEP + LD L      D  L+     KKT
Sbjct: 158 ADRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKLKKT 217

Query: 58  LLVVSHD 64
           ++ VSHD
Sbjct: 218 IVFVSHD 224

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382

>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 9/84 (10%)

Query: 1   MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD------LNAVIWLDNYLQTW 54
           +  K+  E SGG + R+SL R L   P +LLLDE T+ LD      +N +I    Y++  
Sbjct: 130 ILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEII--HRYVREQ 187

Query: 55  KKTLLVVSHDQSFLNNICTDIIHL 78
              +L V+HD+  +N+    +I L
Sbjct: 188 NIAVLWVTHDKDEINH-ADKVITL 210

Length = 225

>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 9   FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLN---AVIWLDNYLQTWKKTLLVVSHDQ 65
           FSGG + RV++AR    +  +LLLDEPT  LD      V+ L    +     L+ + HD+
Sbjct: 150 FSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDE 209

Query: 66  SFLNNICT 73
                +  
Sbjct: 210 EVRELVAD 217

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224

>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 29/111 (26%), Positives = 59/111 (53%), Gaps = 12/111 (10%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLV 60
           +K+    SGG + R+ +AR L +EP +LLLDEPT+ LD  A   +++ +Q  +   T+++
Sbjct: 177 DKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMI 236

Query: 61  VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF---KKMYVQKRKELTKEY 108
           V+H+    + +           +F+Y+G         +++   +  +T++Y
Sbjct: 237 VTHNMQQASRVSD-------YTMFFYEGVLVEHAPTAQLFTNPKDRMTEDY 280

Length = 286

>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 4/63 (6%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK----TLLVVSH 63
           + SGG + RV+LARAL  +P +LLLDEP + LD      +   L+T ++    T + V+H
Sbjct: 100 QLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTH 159

Query: 64  DQS 66
           DQ 
Sbjct: 160 DQE 162

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325

>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 48.6 bits (115), Expect = 2e-06
 Identities = 32/111 (28%), Positives = 60/111 (54%), Gaps = 12/111 (10%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLV 60
           +K+    SGG + R+ +ARA+ LEP +LL+DEPT+ LD  A   ++  +   KK  ++++
Sbjct: 220 DKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIII 279

Query: 61  VSHDQSFLNNICTDIIHLDMKKLFYYKG---NFTLFKKMYVQKRKELTKEY 108
           V+H  +    I  + +       F+Y+G        K +++  + + TK+Y
Sbjct: 280 VTHSMAQAQRISDETV-------FFYQGWIEEAGETKTIFIHPKNKRTKDY 323

Length = 329

>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 48.1 bits (114), Expect = 2e-06
 Identities = 23/58 (39%), Positives = 40/58 (68%), Gaps = 2/58 (3%)

Query: 9   FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHD 64
            SGG + R+ +ARAL +EP +LL+DEPT+ LD  +   +++ +   KK  T+++V+H+
Sbjct: 149 LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHN 206

Length = 252

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 4/67 (5%)

Query: 2   QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD-LNAVIWLDNYLQTWKK---T 57
            +K   + SGG + RV++ARAL + P +LLLDEP   LD L      +  +Q W++   T
Sbjct: 108 ADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVT 167

Query: 58  LLVVSHD 64
           +L+V+HD
Sbjct: 168 VLMVTHD 174

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score = 46.8 bits (112), Expect = 3e-06
 Identities = 19/31 (61%), Positives = 22/31 (70%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
           SGG R RVS+A  L   P+LL LDEPT+ LD
Sbjct: 113 SGGERKRVSIALELVSNPSLLFLDEPTSGLD 143

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 4/68 (5%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK----TLLVVSH 63
           EFSGG   R+ +ARAL LEP L++ DEP + LD++    + N LQ  ++    +L+ ++H
Sbjct: 161 EFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAH 220

Query: 64  DQSFLNNI 71
           D + + +I
Sbjct: 221 DLAVVKHI 228

Length = 331

>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 48.1 bits (114), Expect = 3e-06
 Identities = 25/64 (39%), Positives = 36/64 (56%)

Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241
           L +V++ YP G   LE +N  +     + ++G NG GKST    L G L P KGKVL+  
Sbjct: 4   LENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSG 63

Query: 242 VNFG 245
           ++ G
Sbjct: 64  IDTG 67

Length = 274

>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 20/133 (15%)

Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR------KSPRLRI 288
           GK  LE +N  L+    + ++GP+G GK+T LNL+ G +    G +       + P    
Sbjct: 13  GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAER 72

Query: 289 GKFDQHSGEHLFP-----DDTPCEYLMKLFNLPYE----KSRRQLGMFGLPSYAHTIPIR 339
           G   Q+ G  L P     D+    + ++L  +        + + L   GL        I 
Sbjct: 73  GVVFQNEG--LLPWRNVQDNV--AFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKR-YIW 127

Query: 340 DLSGGQKARVALA 352
            LSGGQ+ RV +A
Sbjct: 128 QLSGGQRQRVGIA 140

Length = 255

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score = 46.8 bits (112), Expect = 4e-06
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVV- 61
           +K     SGG R RV +A+AL  +P++L++DEPT  LD    I   N L    +  +V+ 
Sbjct: 125 KKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVIL 184

Query: 62  -SHDQSFLNNICTDIIHLDMKKLFY 85
            +H    + ++C  +  L+  KL +
Sbjct: 185 STHIVEDVESLCNQVAVLNKGKLVF 209

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein

 Score = 48.4 bits (116), Expect = 4e-06
 Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 1/71 (1%)

Query: 9   FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFL 68
            SGG R R+ +ARAL   P++L+LDE T+ LD      +D+ L+    T ++V+H  S +
Sbjct: 616 LSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTI 675

Query: 69  NNICTDIIHLD 79
            + C +II L+
Sbjct: 676 RD-CDEIIVLE 685

This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score = 46.7 bits (112), Expect = 4e-06
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 180 LGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 235
           + + D +F +  G       L+ +N  +     VA+VGP G GKS+ L+ L GEL    G
Sbjct: 1   ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60

Query: 236 KV 237
            V
Sbjct: 61  SV 62

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group

 Score = 46.8 bits (112), Expect = 4e-06
 Identities = 45/173 (26%), Positives = 67/173 (38%), Gaps = 38/173 (21%)

Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMES 250
           G KV+L+ +N  ++     A++G +G GKST LN++      + G+V L           
Sbjct: 9   GDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQET------ 62

Query: 251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYL- 309
                  N    S F                   R ++G   Q+    L  ++T  E L 
Sbjct: 63  ----PPLNSKKASKFR------------------REKLGYLFQNFA--LIENETVEENLD 98

Query: 310 --MKLFNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356
             +K   L      EK +  L   GL        I +LSGG++ RVALA   L
Sbjct: 99  LGLKYKKLSKKEKREKKKEALEKVGLNLKLKQ-KIYELSGGEQQRVALARAIL 150

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 48.4 bits (116), Expect = 4e-06
 Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 35/117 (29%)

Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIG--------KFDQHSGEHLFPDD 303
           + ++GPNGIGK+TF+ LL G + P++G       L++          +D  + E L    
Sbjct: 370 IGILGPNGIGKTTFVKLLAGVIKPDEG---SEEDLKVSYKPQYISPDYD-GTVEDLLRSA 425

Query: 304 TPCEY--------LMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
               +        ++K  NL     R               P+ +LSGG+  RVA+A
Sbjct: 426 IRSAFGSSYFKTEIVKPLNLEDLLER---------------PVDELSGGELQRVAIA 467

Length = 591

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 18/28 (64%), Positives = 22/28 (78%)

Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGK 236
           V ++GPNGIGKST L +L GEL PN G+
Sbjct: 103 VGILGPNGIGKSTALKILAGELKPNLGR 130

Length = 591

>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 36/139 (25%), Positives = 54/139 (38%), Gaps = 31/139 (22%)

Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQH 294
              +L  ++F L       + GP+G GKST L ++   ++P  G L          F+  
Sbjct: 19  DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLL---------FEGE 69

Query: 295 SGEHLFPDD-----TPCEYLMKLF------NL--PYE---------KSRRQLGMFGLPSY 332
               L P+      + C     LF      NL  P++              L  F LP  
Sbjct: 70  DISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDT 129

Query: 333 AHTIPIRDLSGGQKARVAL 351
             T  I +LSGG+K R++L
Sbjct: 130 ILTKNIAELSGGEKQRISL 148

Length = 225

>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 41/119 (34%), Positives = 54/119 (45%), Gaps = 21/119 (17%)

Query: 251 RVALVGPNGIGKSTFLNLLKGELTPNKGEL--------RKSPRLRIGK--FDQHSGEHLF 300
           RVA++GP+G GKST LNL+ G LTP  G L           P  R     F +++   LF
Sbjct: 27  RVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENN---LF 83

Query: 301 PDDTPCEYL-------MKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
              T  + +       +KL     EK        G+      +P   LSGGQ+ RVALA
Sbjct: 84  SHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-GQLSGGQRQRVALA 141

Length = 232

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 45.9 bits (110), Expect = 4e-06
 Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 6/72 (8%)

Query: 189 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL--EKVNFGL 246
           + G K L + V+  +      AL+G NG GKST + +L G   P+ G++L+  ++V+F  
Sbjct: 10  FGGVKAL-DGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFAS 68

Query: 247 DMESR---VALV 255
             ++R   +A+V
Sbjct: 69  PRDARRAGIAMV 80

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 47.5 bits (113), Expect = 4e-06
 Identities = 48/159 (30%), Positives = 73/159 (45%), Gaps = 28/159 (17%)

Query: 196 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL--EKVNFGLDMESRVA 253
           ++ V+F L     +A++G NG GKST   +L G + P  G++L+    ++FG D   R  
Sbjct: 29  VKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFG-DYSFRSK 87

Query: 254 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF 313
            +       +T LN                PRLRIG+        L  D  P +   ++F
Sbjct: 88  RIRMIFQDPNTSLN----------------PRLRIGQI-LDFPLRLNTDLEPEQRRKQIF 130

Query: 314 NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
                 + R +G+  LP +A+  P   L+ GQK RVALA
Sbjct: 131 E-----TLRMVGL--LPDHANYYP-HMLAPGQKQRVALA 161

Length = 267

>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 6/96 (6%)

Query: 147 KDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLG---LHDVTFGYPGGKVLLEKVNFGL 203
             D ++  +LL+   E  V    P+ P L P  LG     +V+F Y   + +L  ++F +
Sbjct: 230 LTDMEKMFDLLDVEAE--VSDA-PDAPPLWPVRLGAVAFINVSFAYDPRRPILNGISFTI 286

Query: 204 DMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
            +   VA+VG +G GKST L LL      N G + +
Sbjct: 287 PLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITI 322

Length = 497

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 23/139 (16%)

Query: 234 KGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE-------LRKSP-- 284
             K  ++ VN  ++    + L+GP+G GK+T L ++   + P  GE       +      
Sbjct: 12  GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPV 71

Query: 285 --RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNL-PYEKSRRQ------LGMFGLP--SYA 333
             R +IG   Q  G  LFP  T  E +  +  L  ++K R +      L + GL    YA
Sbjct: 72  ELRRKIGYVIQQIG--LFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYA 129

Query: 334 HTIPIRDLSGGQKARVALA 352
              P  +LSGGQ+ RV +A
Sbjct: 130 DRYP-HELSGGQQQRVGVA 147

Length = 309

>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional

 Score = 47.5 bits (113), Expect = 4e-06
 Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 20/116 (17%)

Query: 254 LVGPNGIGKSTFLNLLKGELTPNKGELR----------KSPRLRIGKFDQHSGEHLFPDD 303
           L+GPNG GK+T L +L G   P+ G +           +  R R+G   Q   ++L PD 
Sbjct: 38  LLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQF--DNLDPDF 95

Query: 304 TPCEYLM---KLFNLPYEKSRRQLGMF----GLPSYAHTIPIRDLSGGQKARVALA 352
           T  E L+   + F L    +R  +        L + A    + +LSGG K R+ LA
Sbjct: 96  TVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADA-KVGELSGGMKRRLTLA 150

Length = 306

>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 4/84 (4%)

Query: 161 REYIVKFRFPNPPY-LPPP--VLGLHDVTFGYPGGK-VLLEKVNFGLDMESRVALVGPNG 216
            E +  +   +P   LP P   L + +VT   PGGK   L  ++F L     +A++GP+G
Sbjct: 295 NELLANYPSRDPAMPLPEPEGHLSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSG 354

Query: 217 IGKSTFLNLLKGELTPNKGKVLLE 240
            GKST   L+ G   P  G V L+
Sbjct: 355 SGKSTLARLIVGIWPPTSGSVRLD 378

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544

>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system

 Score = 46.7 bits (111), Expect = 5e-06
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 8/84 (9%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD------LNAVIWLDNYLQTWKKTLLVV 61
           E SGG R RV+LAR L  +  +LLLDEP   LD      +  ++ LD + +T K T+L+V
Sbjct: 128 ELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLV-LDLHAET-KMTVLMV 185

Query: 62  SHDQSFLNNICTDIIHLDMKKLFY 85
           +H       +   ++ LD  ++  
Sbjct: 186 THQPEDAKRLAQRVVFLDNGRIAA 209

Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score = 47.5 bits (113), Expect = 5e-06
 Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 3/59 (5%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA--VIWLD-NYLQTWKKTLLVVSH 63
           + SGG + R++LARAL  +P LL+LDEPT  LD +A  +IW     L    KT+L+ +H
Sbjct: 172 DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 230

Length = 340

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 7/82 (8%)

Query: 7   KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD--LNAVIWLDNYLQTWKK---TLLVV 61
             +SGG R R+ +A +L  +P +L LDEPT  LD      IW  +Y++  K+   T+L+ 
Sbjct: 123 GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIW--DYIRALKEEGVTILLT 180

Query: 62  SHDQSFLNNICTDIIHLDMKKL 83
           +H     + +C  I  +D  ++
Sbjct: 181 THYMEEADKLCDRIAIIDHGRI 202

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 46.8 bits (111), Expect = 5e-06
 Identities = 34/111 (30%), Positives = 59/111 (53%), Gaps = 12/111 (10%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQ--TWKKTLLV 60
            K     SGG + R+ +ARAL +EP ++LLDEPT+ LD  A   ++  L+  +   T+++
Sbjct: 141 NKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVI 200

Query: 61  VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF---KKMYVQKRKELTKEY 108
           V+H+      I  D I       F Y+G    +   +++  + + +LT+EY
Sbjct: 201 VTHNIGQAIRI-ADYI------AFMYRGELIEYGPTREIVERPKNKLTEEY 244

Length = 250

>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit

 Score = 47.1 bits (112), Expect = 6e-06
 Identities = 39/115 (33%), Positives = 53/115 (46%), Gaps = 19/115 (16%)

Query: 254 LVGPNGIGKSTFLNLLKGELTPNKGELRKS--------PRLR-IGKFDQHSGEHLFPDDT 304
           L+GP+G GK+T L LL G   P+ G +           P LR I    Q     LFP  T
Sbjct: 1   LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYA--LFPHMT 58

Query: 305 PCE---YLMKLFNLPYE----KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
             E   + +K+  +P      +    L +  L  +A   P + LSGGQ+ RVALA
Sbjct: 59  VEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQ-LSGGQQQRVALA 112

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325

>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 26/63 (41%), Positives = 43/63 (68%), Gaps = 2/63 (3%)

Query: 4   KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVV 61
           KS    SGG + R+ +ARAL +EP +LL+DEPT+ LD  + + ++  +Q  KK  T+++V
Sbjct: 142 KSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIV 201

Query: 62  SHD 64
           +H+
Sbjct: 202 THN 204

Length = 250

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score = 46.1 bits (110), Expect = 7e-06
 Identities = 44/141 (31%), Positives = 62/141 (43%), Gaps = 34/141 (24%)

Query: 236 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE-------LRKSPR--- 285
           +  L+ V+F +     VAL+GPNG GKST  +LL       +G+       LR++PR   
Sbjct: 14  RRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAAL 73

Query: 286 LRIGK-FDQHSGEHLFPDDTPCEYLMKLFNLPYEK-----SRRQ--------LGMFGLPS 331
            R+G  F Q +   L  D      L    NL Y       SR +        L   GL  
Sbjct: 74  ARLGVVFQQPT---LDLD------LSVRQNLRYHAALHGLSRAEARARIAELLARLGLAE 124

Query: 332 YAHTIPIRDLSGGQKARVALA 352
            A    +R+L+GG + RV +A
Sbjct: 125 RADD-KVRELNGGHRRRVEIA 144

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional

 Score = 46.7 bits (111), Expect = 7e-06
 Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 5/61 (8%)

Query: 7   KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA--VIW--LDNYLQTWKKTLLVVS 62
            E SGG + R++LARAL  +P +L+LDEPT  LD  A  ++W  L + L    KT+L+ +
Sbjct: 137 GELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLAR-GKTILLTT 195

Query: 63  H 63
           H
Sbjct: 196 H 196

Length = 306

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score = 46.0 bits (110), Expect = 8e-06
 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 6/88 (6%)

Query: 4   KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD-LNAVIWLDNYL----QTWKKTL 58
           +   + SGG + RV++ARAL  +P L+L DEP   LD  ++   +D  L    +    T+
Sbjct: 140 QRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMD-LLKRINREEGITV 198

Query: 59  LVVSHDQSFLNNICTDIIHLDMKKLFYY 86
           +V  H           I+ L   ++ + 
Sbjct: 199 IVSLHQVDLAREYADRIVGLKDGRIVFD 226

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 46.3 bits (110), Expect = 8e-06
 Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)

Query: 178 PVLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGK 236
            +L +  ++  Y G  +  LE V+  +     V ++GP+G GK+T LNL+ G +TP++G 
Sbjct: 2   CMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGS 61

Query: 237 VLL 239
           + L
Sbjct: 62  IQL 64

Length = 259

>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional

 Score = 46.6 bits (111), Expect = 8e-06
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK----TLLVVSH 63
           EFSGG R RV +A AL   P LL+ DEPT  LD+     +   L   K+     +++++H
Sbjct: 161 EFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITH 220

Query: 64  DQSFLNNIC 72
           D   +  IC
Sbjct: 221 DLGVVAGIC 229

Length = 330

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 47.2 bits (113), Expect = 9e-06
 Identities = 40/138 (28%), Positives = 59/138 (42%), Gaps = 31/138 (22%)

Query: 237 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--------KSP---- 284
           V  + V+  +      AL+G NG GKST + +L G   P+ GE+R        KSP    
Sbjct: 18  VANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAI 77

Query: 285 RLRIGKFDQHSGEHLFPDDTPCEYLM------KLFNLPYEKSR-------RQLGMFGLPS 331
           RL IG   QH    L P  T  E ++      K   +   ++R        + G+  +  
Sbjct: 78  RLGIGMVHQHF--MLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLP-VDP 134

Query: 332 YAHTIPIRDLSGGQKARV 349
            A    + DLS G++ RV
Sbjct: 135 DAK---VADLSVGEQQRV 149

Length = 501

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score = 46.8 bits (111), Expect = 9e-06
 Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 7/72 (9%)

Query: 1   MQE---KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD--LNAVIWLD--NYLQT 53
           MQE   +   + SGG R RV+LAR+L   P LLLLDEP   LD  L   + L+  + L+ 
Sbjct: 139 MQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILER 198

Query: 54  WKKTLLVVSHDQ 65
              T ++V+HDQ
Sbjct: 199 VGVTCVMVTHDQ 210

Length = 377

>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE

 Score = 46.3 bits (110), Expect = 9e-06
 Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 4/81 (4%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD--LNAVI--WLDNYLQTWKKTL 58
           +K  ++ SGG   R+++ARAL ++P L++LDE  ++LD  L AVI   L    Q +    
Sbjct: 145 DKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAY 204

Query: 59  LVVSHDQSFLNNICTDIIHLD 79
           L ++HD   + + C  +  +D
Sbjct: 205 LFITHDLRLVQSFCQRVAVMD 225

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265

>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional

 Score = 46.6 bits (111), Expect = 9e-06
 Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 4/67 (5%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD----LNAVIWLDNYLQTWKKTL 58
           ++  K  SGG R RV++ R L  EP++ LLDEP ++LD    +   I +    +   +T+
Sbjct: 128 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTM 187

Query: 59  LVVSHDQ 65
           + V+HDQ
Sbjct: 188 IYVTHDQ 194

Length = 369

>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 46.2 bits (109), Expect = 9e-06
 Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 17/118 (14%)

Query: 4   KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK----KTLL 59
           KS  + SGG + R+ +ARAL ++P +LL+DEP   LD  A + +++ +Q+ +     T++
Sbjct: 146 KSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMV 205

Query: 60  VVSHDQSFLNNICTDIIHLDMKKLFYYKGN-------FTLFKKMYVQKRKELTKEYEL 110
           +VSH+   ++ +       D    F    N       F L KK++       T+EY L
Sbjct: 206 IVSHNLHQVSRLS------DFTAFFKGNENRIGQLVEFGLTKKIFNSPHDSRTREYVL 257

Length = 261

>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

 Score = 47.1 bits (112), Expect = 9e-06
 Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 169 FPNPPYLPP-PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK 227
           FP P   P    L L +V F Y      +  +N  +     V L+G NG GKST   LL 
Sbjct: 311 FPRPQAFPDWKTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLT 370

Query: 228 GELTPNKGKVLLE 240
           G   P  G++LL+
Sbjct: 371 GLYQPQSGEILLD 383

Length = 546

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 39/135 (28%), Positives = 58/135 (42%), Gaps = 41/135 (30%)

Query: 232 PNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE----------LR 281
           P + + +L+ ++  L    ++AL+G +G GKST L LL G+L P +GE          L 
Sbjct: 11  PEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLE 70

Query: 282 KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDL 341
           K+    I   +Q    +LF D T                R  LG             R  
Sbjct: 71  KALSSLISVLNQRP--YLF-DTT---------------LRNNLG-------------RRF 99

Query: 342 SGGQKARVALAELTL 356
           SGG++ R+ALA + L
Sbjct: 100 SGGERQRLALARILL 114

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 46.7 bits (112), Expect = 1e-05
 Identities = 15/29 (51%), Positives = 20/29 (68%)

Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGKV 237
             ++GPNGIGK+T + +L GEL PN G  
Sbjct: 102 TGILGPNGIGKTTAVKILSGELIPNLGDY 130

Length = 590

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 42/182 (23%), Positives = 64/182 (35%), Gaps = 53/182 (29%)

Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241
           L +VT  + G    L+ +N  +     V L+GP+G GK+T L ++ G   P  G++ +  
Sbjct: 3   LENVTKRF-GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIG- 60

Query: 242 VNFGLDMESRVALVGPN--GIGKSTFLNLLKGELTPNKG---------ELRKSPRLRIGK 290
                     V  + P    I    F N     L P+           +LRK P+  I  
Sbjct: 61  -------GRDVTDLPPKDRDIAM-VFQNY---ALYPHMTVYDNIAFGLKLRKVPKDEID- 108

Query: 291 FDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVA 350
                                      E+ R    +  +       P + LSGGQ+ RVA
Sbjct: 109 ---------------------------ERVREVAELLQIEHLLDRKP-KQLSGGQRQRVA 140

Query: 351 LA 352
           L 
Sbjct: 141 LG 142

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLDL----NAVIWLDNYLQTWKKTLLVVSHD 64
           SGG R RV+L RAL  +P  LLLDEP + LD+        W+ + ++      + V+HD
Sbjct: 136 SGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHD 194

Length = 213

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 50/175 (28%), Positives = 71/175 (40%), Gaps = 40/175 (22%)

Query: 186 TFGYPGGKV-LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF 244
            FG  GGKV  L+ V+  +       ++G +G GKST +  + G   P  G VL++    
Sbjct: 10  VFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVD---- 65

Query: 245 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDT 304
           G D+                           +  ELRK+ R RIG   QH   +L    T
Sbjct: 66  GTDLTLL------------------------SGKELRKA-RRRIGMIFQHF--NLLSSRT 98

Query: 305 PCE---YLMKLFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
             E     +++  +P     E+    L + GL   A   P   LSGGQK RV +A
Sbjct: 99  VFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYP-AQLSGGQKQRVGIA 152

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 19/33 (57%), Positives = 23/33 (69%)

Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSP 284
           + LVGPNGIGKST L +L G+L PN G+    P
Sbjct: 29  LGLVGPNGIGKSTALKILAGKLKPNLGKFDDPP 61

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255

>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 19/28 (67%), Positives = 22/28 (78%)

Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGK 236
           + LVGPNGIGKST L +L G+L PN GK
Sbjct: 29  LGLVGPNGIGKSTALKILAGKLKPNLGK 56

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255

>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 5/64 (7%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK-----TLLVVS 62
           + SGG + R+++ARA+ +EP +LLLDEP + LD N    +   +    +     T+L V+
Sbjct: 137 QLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVT 196

Query: 63  HDQS 66
           HDQ 
Sbjct: 197 HDQD 200

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362

>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 22/109 (20%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHDQSF 67
           SGG + R+ +ARAL ++P +LL+DEPT+ LD  + + ++  +   KK  T+++V+H    
Sbjct: 151 SGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTH---- 206

Query: 68  LNNI-----CTDIIHLDMKKLFYYKGN---FTLFKKMYVQKRKELTKEY 108
             N+      +D         F+Y G    F    K++   + + T++Y
Sbjct: 207 --NMQQAARVSDYT------AFFYLGELVEFGPTDKIFTNPKHKRTEDY 247

Length = 253

>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 17/88 (19%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD-------LNAVIWLDNYLQTWKKTLLV 60
           + SGG + RV++ARAL + P ++L DE T+ LD       LN VI           T+L+
Sbjct: 146 QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLN-VIR--RLASEHDLTMLL 202

Query: 61  VSHDQSFLNNICTDIIHLDMKKLFYYKG 88
           V+H+  F       +        F+ KG
Sbjct: 203 VTHEMGFAREFADRV-------CFFDKG 223

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 44/194 (22%), Positives = 75/194 (38%), Gaps = 57/194 (29%)

Query: 179 VLGLHDVTFGYPGGK---VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 235
           +L + +++  +P G      L+ V+F +     + LVG +G GKST    + G L P  G
Sbjct: 1   LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG 60

Query: 236 KVLLEKVN-------FGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRI 288
            ++ +  +               + +V  + +     LN                PR+ I
Sbjct: 61  SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSS---LN----------------PRMTI 101

Query: 289 GKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGM-----FGLPS-----YAHTIPI 338
                  GE +       E L     L  +++R++  +      GLP      Y H    
Sbjct: 102 -------GEQI------AEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPH---- 144

Query: 339 RDLSGGQKARVALA 352
            +LSGGQ+ RVA+A
Sbjct: 145 -ELSGGQRQRVAIA 157

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 7   KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDL---NAVIWLDNYLQTWKKTLLV-VS 62
            + SGG + RV+LARA    P +L  DEPT +LD    + +  L   L   + T LV V+
Sbjct: 145 AQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVT 204

Query: 63  HDQS 66
           HD  
Sbjct: 205 HDPQ 208

Length = 228

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 46.0 bits (110), Expect = 2e-05
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 4/78 (5%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD----LNAVIWLDNYLQTWKKTL 58
           +K+ K+ SGG   RV++A  L  +  L LLDEP+ HLD    L     +    +  + T 
Sbjct: 448 DKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATA 507

Query: 59  LVVSHDQSFLNNICTDII 76
           LVV HD   ++ I   ++
Sbjct: 508 LVVDHDIYMIDYISDRLM 525

Length = 590

>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 12/66 (18%)

Query: 7   KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT--------WKKTL 58
            E SGG + RV LARAL ++P +LL+DE  + LD   +I  +  +Q          +KT+
Sbjct: 159 DELSGGMQQRVGLARALAVDPDILLMDEAFSALD--PLIRRE--MQDELLRLQAELQKTI 214

Query: 59  LVVSHD 64
           + ++HD
Sbjct: 215 VFITHD 220

This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269

>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 43/121 (35%), Positives = 52/121 (42%), Gaps = 36/121 (29%)

Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK 311
           VA+VG +G GKST L LL G  TP+ GEL        G            +DT    LM 
Sbjct: 41  VAVVGRSGCGKSTLLRLLAGLETPSAGELLA------GTAPLAEAR----EDT---RLM- 86

Query: 312 LFN----LPYEK----------------SRRQLGMFGLPSYAHTIPIRDLSGGQKARVAL 351
            F     LP++K                + + L   GL   A+  P   LSGGQK RVAL
Sbjct: 87  -FQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAA-LSGGQKQRVAL 144

Query: 352 A 352
           A
Sbjct: 145 A 145

Length = 257

>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 3/64 (4%)

Query: 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
           L L D+T+ Y     L  + +  ++   RVA++GP+G GKST LNL+ G LTP  G + L
Sbjct: 2   LKLTDITWLYHH---LPMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTL 58

Query: 240 EKVN 243
              +
Sbjct: 59  NGQD 62

Length = 232

>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 7   KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQS 66
              SGG + R++ AR L  +P  + LDE T+ LD  +   L   L+    T++ V H  S
Sbjct: 90  DVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPS 149

Query: 67  FLNNICTDIIHLD 79
            L      ++ LD
Sbjct: 150 -LWKFHDRVLDLD 161

Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 5/74 (6%)

Query: 178 PVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGK 236
            ++ + +V+F YP      L+ V+F ++    VA++G NG GKST   +L G L P  G+
Sbjct: 6   VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGE 65

Query: 237 VLLEKVNFGLDMES 250
           + +     G+ +  
Sbjct: 66  IKI----DGITISK 75

Length = 271

>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 4/58 (6%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLDL----NAVIWLDNYLQTWKKTLLVVSH 63
           SGG + RV++ RAL   P LLL+DEP   LDL      + +L+         +L VSH
Sbjct: 130 SGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSH 187

Length = 352

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 46.0 bits (110), Expect = 2e-05
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 5/72 (6%)

Query: 176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRV-ALVGPNGIGKSTFLNLLKGELTPNK 234
            PP+L L  ++  + G K L + V+  +     V AL+G NG GKST + +L G   P+ 
Sbjct: 5   TPPLLELRGISKSFGGVKAL-DGVSLTV-RPGEVHALLGENGAGKSTLMKILSGVYPPDS 62

Query: 235 GKVLL--EKVNF 244
           G++L+  + V F
Sbjct: 63  GEILIDGKPVAF 74

Length = 500

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 4/80 (5%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLD----LNAVIWLDNYLQTWKKTLLVVSHDQ 65
           SGG R RVS+A  L  +P +L+LDEPT+ LD    LN V  L    +  +  +L +   +
Sbjct: 145 SGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPR 204

Query: 66  SFLNNICTDIIHLDMKKLFY 85
           S L  +   I+ L   ++ Y
Sbjct: 205 SDLFRLFDRILLLSSGEIVY 224

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 185 VTFGY-PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN 243
           V F Y P G V+L+ ++  +     V +VG +G GKST   L++    P  G+VL++  +
Sbjct: 6   VRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHD 65

Query: 244 FGL-DMESRVALVG 256
             L D       VG
Sbjct: 66  LALADPAWLRRQVG 79

The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237

>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 4/66 (6%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDL---NAVI-WLDNYLQTWKKTL 58
            +     SGG + RV++ RAL   P LLL+DEP   LD      ++ +L+     +   +
Sbjct: 126 GRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPI 185

Query: 59  LVVSHD 64
           L VSH 
Sbjct: 186 LYVSHS 191

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354

>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 45.0 bits (106), Expect = 2e-05
 Identities = 30/108 (27%), Positives = 56/108 (51%), Gaps = 6/108 (5%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLV 60
           +++ + FSGG + R+ +ARAL + P ++LLDEPT+ LD  +   ++  L   K   T ++
Sbjct: 142 DRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIM 201

Query: 61  VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEY 108
           V+H+      I      L    L          ++M++  +K++T +Y
Sbjct: 202 VTHNLQQAGRISDQTAFLMNGDLIEAGPT----EEMFIAPKKQITSDY 245

Length = 251

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 17/114 (14%)

Query: 253 ALVGPNGIGKSTFLNLLKGELTPNKGELR-------KSPRLRIGKFDQHSGEHLFPDDTP 305
            L+GPNG GK+T + ++ G + P+ GE+         + R RIG   +  G  L+P    
Sbjct: 30  GLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERG--LYPKMKV 87

Query: 306 CE---YLMKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALA 352
            +   YL +L  L  E++RR+    L    L  YA+   + +LS G + +V   
Sbjct: 88  IDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYAN-KRVEELSKGNQQKVQFI 140

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 5/75 (6%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD----LNAVIWLDNYLQTWKKTLLVVSH 63
           + SGG   RV++A AL    T  L DEP+ +LD    LNA   +    +  KKT LVV H
Sbjct: 71  DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEH 130

Query: 64  DQSFLNNICTDIIHL 78
           D + L+ + +D IH+
Sbjct: 131 DLAVLDYL-SDRIHV 144

The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 47/193 (24%), Positives = 72/193 (37%), Gaps = 48/193 (24%)

Query: 178 PVLGLHD--VTFGYPGGKV-LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN- 233
           P+L + +  V F   GG+V  +  V+F ++    + +VG +G GKST    L G L    
Sbjct: 4   PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGG 63

Query: 234 ---KGKVLLEKVN-FGLDMESRVALVGPNGIG---KSTFLNLLKGELTPNKGELRKSPRL 286
               G+V+L+  +  GL       L G   I    +    +L              +P +
Sbjct: 64  RITSGEVILDGRDLLGLSEREMRKLRGKR-IAMIFQDPMTSL--------------NPVM 108

Query: 287 RIGKFDQ-------HSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIR 339
            IG  DQ       H              L++   LP  + R +        Y H     
Sbjct: 109 TIG--DQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDR--------YPH----- 153

Query: 340 DLSGGQKARVALA 352
            LSGG + RV +A
Sbjct: 154 QLSGGMRQRVMIA 166

Length = 539

>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 26/133 (19%)

Query: 241 KVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLF 300
           K++F L+ E    + G +G GKST L  + G   P+ G +  +  +    FD     +L 
Sbjct: 16  KIDFDLN-EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVL---FDSRKKINLP 71

Query: 301 PDDTPCEYLMK---LF-------NLPY------EKSRRQ-----LGMFGLPSYAHTIPIR 339
           P       + +   LF       NL +       +  R      L + GL    +     
Sbjct: 72  PQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNR-YPA 130

Query: 340 DLSGGQKARVALA 352
            LSGG+K RVALA
Sbjct: 131 QLSGGEKQRVALA 143

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214

>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 4/61 (6%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDN-YLQTWKKT---LLVVSH 63
           + SGG R RV +ARAL   P LLLLDEP   LD      +    L+ W++T   +L+++H
Sbjct: 128 QLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITH 187

Query: 64  D 64
           D
Sbjct: 188 D 188

Length = 255

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 10/79 (12%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK-------TLLV 60
           + SGG + RV +ARAL   P +LL DE T+ LD        + L   +        T+++
Sbjct: 140 QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETT---QSILALLRDINRELGLTIVL 196

Query: 61  VSHDQSFLNNICTDIIHLD 79
           ++H+   +  IC  +  ++
Sbjct: 197 ITHEMEVVKRICDRVAVME 215

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 31/178 (17%)

Query: 183 HDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKV 242
            DVT  + G   +L+ +NF +    +VAL+GP+G GKST L +L      ++G++ +E  
Sbjct: 4   SDVTKRF-GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGE 62

Query: 243 NFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPD 302
                M  R                   G L P   +  +  R +IG   Q    +LFP 
Sbjct: 63  QL-YHMPGR------------------NGPLVPADEKHLRQMRNKIGMVFQSF--NLFPH 101

Query: 303 ----DTPCEYLMKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALA 352
               D   E  + +  +   ++ ++    L M GL   A  +P + LSGGQ+ RVA+A
Sbjct: 102 KTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQ-LSGGQQQRVAIA 158

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 4/66 (6%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK----TL 58
           ++  K +SGG R R+ +AR+L   P +L LDEPT  LD      +  Y++  K+    T+
Sbjct: 126 DRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTI 185

Query: 59  LVVSHD 64
           L+ +H 
Sbjct: 186 LLTTHY 191

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 45.8 bits (108), Expect = 3e-05
 Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 4/61 (6%)

Query: 7    KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK----KTLLVVS 62
            K  SGG + R+++ARAL  EP +LLLDE T+ LD N+   ++  +   K    KT++ ++
Sbjct: 1357 KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIA 1416

Query: 63   H 63
            H
Sbjct: 1417 H 1417

Length = 1466

>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 4/58 (6%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTL----LVVSH 63
           SGG + RV++ RAL   P LLL+DEP   LDL     L  YL+   + +    L VSH
Sbjct: 130 SGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSH 187

Length = 352

>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 44.7 bits (105), Expect = 3e-05
 Identities = 28/106 (26%), Positives = 56/106 (52%), Gaps = 12/106 (11%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHDQ 65
           + SGG + R+++ARAL L+P +LL+DEPT+ +D+     ++  +   K    +++VSH+ 
Sbjct: 153 QLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNP 212

Query: 66  SFLNNICTDIIHLDMKKLFYYKGNFTLF---KKMYVQKRKELTKEY 108
             +  +   +        F Y G    +    +++   + ELT++Y
Sbjct: 213 QQVARVADYVA-------FLYNGELVEWGSSNEIFTSPKNELTEKY 251

Length = 257

>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 46/173 (26%), Positives = 70/173 (40%), Gaps = 39/173 (22%)

Query: 188 GYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLD 247
           G P  K  L+ VN  ++    V L+G  G GKST +  L G L P  GK++++ V+    
Sbjct: 15  GTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDI--- 71

Query: 248 MESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCE 307
                         K   L+           ++RK    ++G   Q+    LF +    +
Sbjct: 72  ------------TDKKVKLS-----------DIRK----KVGLVFQYPEYQLFEETIEKD 104

Query: 308 YLMKLFNLP------YEKSRRQLGMFGLP--SYAHTIPIRDLSGGQKARVALA 352
                 NL         + +R + + GL    Y    P  +LSGGQK RVA+A
Sbjct: 105 IAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPF-ELSGGQKRRVAIA 156

Length = 287

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 26/130 (20%)

Query: 252 VALVGPNGIGKSTFLNLLKGELTPN---------KGELRKSPRLR-IGKFDQHSGEHLFP 301
           +A++G +G GK+T +N L                 G    +  +R I  + Q   +   P
Sbjct: 54  LAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQD-DLFIP 112

Query: 302 DDTPCEYLM-----KLFNLPYEKSRRQ-----LGMFGLPSYAHTI-----PIRDLSGGQK 346
             T  E+LM     ++     +K +R+     L   GL   A+T       ++ LSGG++
Sbjct: 113 TLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGER 172

Query: 347 ARVALAELTL 356
            R+A A   L
Sbjct: 173 KRLAFASELL 182

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 21/57 (36%), Positives = 40/57 (70%), Gaps = 2/57 (3%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHD 64
           SGG + R+ +AR L +EP ++L+DEPT+ LD  + + ++  +Q  KK  ++++V+H+
Sbjct: 169 SGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHN 225

Length = 271

>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 3/72 (4%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLN--AVIWLDNYLQTWKKTLLVVSHDQSF 67
           SGG R R+++ARAL   P +L+ DE T+ LD    A+I  +       +T+++++H  S 
Sbjct: 595 SGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLST 654

Query: 68  LNNICTDIIHLD 79
           +   C  II L+
Sbjct: 655 VRA-CDRIIVLE 665

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 45.3 bits (108), Expect = 4e-05
 Identities = 21/50 (42%), Positives = 30/50 (60%)

Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
           G K L E ++      +R  L+G NG GKSTF+ +L G+L P+ G V L+
Sbjct: 12  GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLD 61

Length = 530

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 5/85 (5%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIW-LDNYLQTWKK---TLLVVSH 63
           + SGG + RV++ARA+  +P +LL DEPT +LD   + W +    +   +   T+L+ +H
Sbjct: 137 QLSGGEQQRVAIARAIVNQPAVLLADEPTGNLD-PDLSWEIMRLFEEINRLGTTVLMATH 195

Query: 64  DQSFLNNICTDIIHLDMKKLFYYKG 88
           D   +N +   ++ L+  +L   + 
Sbjct: 196 DLELVNRMRHRVLALEDGRLVRDES 220

Length = 223

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYL----QTWKKTLLVVSH 63
           E SGG + RV +ARAL  +P LLL+DEP   LD      L        Q   KT++ V+H
Sbjct: 135 ELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTH 194

Query: 64  D 64
           D
Sbjct: 195 D 195

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 17/31 (54%), Positives = 24/31 (77%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
           SGG R R+++ARAL  +P +L+LDE T+ LD
Sbjct: 140 SGGQRQRIAIARALLKDPPILILDEATSALD 170

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 44.0 bits (105), Expect = 4e-05
 Identities = 15/43 (34%), Positives = 23/43 (53%)

Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 281
           L  V+  ++    VAL+G NG GK+T L  + G + P  G + 
Sbjct: 19  LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRII 61

Length = 237

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 44.8 bits (107), Expect = 4e-05
 Identities = 35/125 (28%), Positives = 48/125 (38%), Gaps = 28/125 (22%)

Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELR--------KSPR----LRIGKFDQHSGEHL 299
            AL+G NG GKST + +L G   P+ GE+          SPR      I    Q     L
Sbjct: 37  HALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQEL--SL 94

Query: 300 FPDDTPCEYLMKLFNLP------------YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKA 347
            P+ +  E +  L   P              ++R  L   GL     T  + DLS  Q+ 
Sbjct: 95  VPNLSVAENIF-LGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDT-LVGDLSIAQRQ 152

Query: 348 RVALA 352
            V +A
Sbjct: 153 MVEIA 157

Length = 500

>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 12/71 (16%)

Query: 1   MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD-------LNAVIWL-DNYLQ 52
            ++KS  E SGG + RV++A  + +EP +L+LDEPT  LD       LN +  L   Y  
Sbjct: 137 YKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEY-- 194

Query: 53  TWKKTLLVVSH 63
               T+++VSH
Sbjct: 195 --NMTIILVSH 203

Length = 287

>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 4/74 (5%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLN---AVIWLDNYLQTWKKT-LLVVSHDQ 65
           SGG   RV LARAL +EP LL+LDE  ++LDL     VI L   LQ    T  L ++HD 
Sbjct: 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDL 212

Query: 66  SFLNNICTDIIHLD 79
             +   C  ++ +D
Sbjct: 213 RLVERFCQRVMVMD 226

Length = 268

>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 1/64 (1%)

Query: 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGK 236
           P +L L  V+  + G K L + ++F +D      L+GPNG GK+T ++++ G+  P +G+
Sbjct: 3   PIILYLDGVSVSFGGFKALND-LSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGE 61

Query: 237 VLLE 240
           VL +
Sbjct: 62  VLFD 65

Length = 249

>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI

 Score = 44.5 bits (105), Expect = 4e-05
 Identities = 27/59 (45%), Positives = 37/59 (62%), Gaps = 3/59 (5%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA--VIWLD-NYLQTWKKTLLVVSH 63
             SGG + R++LARAL  +P LL+LDEPT  LD +A  +IW     L    KT+L+ +H
Sbjct: 135 LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 193

This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303

>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 3/65 (4%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK---KTLL 59
           ++S  E SGG + RV+LA  L +EP  L+ DEPT  LD   V  +           KT++
Sbjct: 160 QRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTII 219

Query: 60  VVSHD 64
           +V+HD
Sbjct: 220 LVTHD 224

Length = 305

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score = 43.2 bits (102), Expect = 5e-05
 Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 3/67 (4%)

Query: 1   MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAV---IWLDNYLQTWKKT 57
           ++E+ T   SGG + RV++A A+ + P +LLLDEPT  LD       + +   L+    T
Sbjct: 120 LRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMT 179

Query: 58  LLVVSHD 64
           +++ +HD
Sbjct: 180 VVISTHD 186

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTL----LVVSH 63
           E SGG R RV +A AL  EP LL+ DEPT  LD+     + + L+  +  L    L ++H
Sbjct: 157 ELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITH 216

Query: 64  D 64
           D
Sbjct: 217 D 217

Length = 534

>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 14/59 (23%)

Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
           L+D++   P GK+               AL+GPNG GKST L      LTP  G V L 
Sbjct: 18  LNDLSLSLPTGKI--------------TALIGPNGCGKSTLLKCFARLLTPQSGTVFLG 62

Length = 255

>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 27/60 (45%), Positives = 35/60 (58%), Gaps = 4/60 (6%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD--LNAVI--WLDNYLQTWKKTLLVVSH 63
           + SGG R RV+LAR L  E  +LLLDEP + LD  L   +   +    Q  + TLL+VSH
Sbjct: 129 QLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSH 188

Length = 232

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 7   KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD----LNAVIWLDNYLQTWKKTLLVVS 62
            E SGG + RV +ARAL  +P +LL+DEP   LD          +    +   KT++ V+
Sbjct: 134 HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVT 193

Query: 63  HD 64
           HD
Sbjct: 194 HD 195

Length = 309

>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional

 Score = 44.0 bits (104), Expect = 5e-05
 Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 2/57 (3%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHD 64
           SGG + R+ +ARAL +EP +LL+DEP + LD  A   ++  +   K   T+++V+H+
Sbjct: 151 SGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHN 207

Length = 253

>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 23/63 (36%), Positives = 41/63 (65%), Gaps = 2/63 (3%)

Query: 4   KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVV 61
           KS    SGG + R+ +ARA+ ++P +LL+DEP + LD  + + L+  +   KK  T+++V
Sbjct: 159 KSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIV 218

Query: 62  SHD 64
           +H+
Sbjct: 219 THN 221

Length = 267

>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 44.0 bits (104), Expect = 5e-05
 Identities = 48/177 (27%), Positives = 69/177 (38%), Gaps = 39/177 (22%)

Query: 184 DVTFGYPGGKV-LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP---NKGKVLL 239
            V+F YP  K   L  ++F +   S  AL+G NG GKST   L+ G L P      K+ +
Sbjct: 10  HVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITV 69

Query: 240 EKVNFG----LDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHS 295
           + +        D+  +V +V  N    + F+    G+      E R  PR  + K     
Sbjct: 70  DGITLTAKTVWDIREKVGIVFQN--PDNQFVGATVGDDVAFGLENRAVPRPEMIKI---- 123

Query: 296 GEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
                                    R  L   G+  Y  + P  +LSGGQK RVA+A
Sbjct: 124 ------------------------VRDVLADVGMLDYIDSEP-ANLSGGQKQRVAIA 155

Length = 282

>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 17/127 (13%)

Query: 242 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR---KSPRLRIGKFDQHSGEH 298
           ++F +     V  +G NG GKST L +L G L P  G++R   K P  R  ++ +  G  
Sbjct: 43  ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLV 102

Query: 299 LF---------PDDTPCEYLMKLFNLPYEKSRRQLG----MFGLPSYAHTIPIRDLSGGQ 345
           +          P     E L  ++ +P ++   +L     +  L  +    P+R LS GQ
Sbjct: 103 MGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKW-PVRKLSLGQ 161

Query: 346 KARVALA 352
           + R  LA
Sbjct: 162 RMRAELA 168

Length = 325

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score = 43.6 bits (103), Expect = 6e-05
 Identities = 29/129 (22%), Positives = 47/129 (36%), Gaps = 16/129 (12%)

Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE-------LRKSPRLRIGKF 291
           +  V+F  +      L+G NG GK+T L ++   L P+ G+         + P     K 
Sbjct: 18  VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKI 77

Query: 292 DQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLG--------MFGLPSYAHTIPIRDLSG 343
               GE            +K F      SR+++            L  Y     + + S 
Sbjct: 78  GVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDR-RVGEFST 136

Query: 344 GQKARVALA 352
           G K +VA+A
Sbjct: 137 GMKQKVAIA 145

Length = 245

>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 40/145 (27%), Positives = 57/145 (39%), Gaps = 37/145 (25%)

Query: 236 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL--------------R 281
           K +L  +N  ++    V L GP+G GK+T L L+ G  +  +G L               
Sbjct: 18  KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKEL 77

Query: 282 KSPRLRIGK-FDQHS-------------GEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMF 327
              R  IG  F  H+                L P+ +  E          E++R  L   
Sbjct: 78  VQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQE--------ARERARAMLEAV 129

Query: 328 GLPSYAHTIPIRDLSGGQKARVALA 352
           GL  +    P  +LSGGQK RVA+A
Sbjct: 130 GLGDHLDYYP-HNLSGGQKQRVAIA 153

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220

>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor

 Score = 43.6 bits (103), Expect = 6e-05
 Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 19/110 (17%)

Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKS-------PRLRIGKFDQHSGEHLFPDDT 304
           + ++GPNGIGK+TF+ +L G L P++G++          P+     ++    + L     
Sbjct: 28  IGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLS---- 83

Query: 305 PCEYLMKLFNLPYEKSR--RQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
                   +  PY K+   + L +  +      +P  +LSGG+  RVA+A
Sbjct: 84  --SITKDFYTHPYFKTEIAKPLQIEQI--LDREVP--ELSGGELQRVAIA 127

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246

>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.6 bits (103), Expect = 6e-05
 Identities = 20/37 (54%), Positives = 24/37 (64%)

Query: 4   KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
           +  K  SGG   RVS+AR L   P +LLLDEPT+ LD
Sbjct: 127 RDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALD 163

Length = 241

>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 16/62 (25%)

Query: 178 PVLGLHDVTFG-YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGK 236
           P  G  DV+F  YPG +VL               +VG +G GK+T LN L   L P+ G+
Sbjct: 18  PRKGCRDVSFDLYPG-EVL--------------GIVGESGSGKTTLLNALSARLAPDAGE 62

Query: 237 VL 238
           V 
Sbjct: 63  VH 64

Length = 258

>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 184 DVTF--GYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241
             TF  G P  K  L  ++  +     V ++G NG GKST LN + G+L P  G++L++ 
Sbjct: 8   TKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDG 67

Query: 242 VN 243
           V+
Sbjct: 68  VD 69

Length = 263

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score = 43.7 bits (104), Expect = 6e-05
 Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 4/65 (6%)

Query: 182 LHDVTFGYP---GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
             +V+F YP      +L   ++  +     VALVG +G GKST ++LL+    P  G++L
Sbjct: 3   FKNVSFRYPSRPDVPILKG-LSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEIL 61

Query: 239 LEKVN 243
           L+ V+
Sbjct: 62  LDGVD 66

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional

 Score = 44.5 bits (105), Expect = 6e-05
 Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK---KTLLVVSHDQS 66
           SGG R RVS+A  + + P+LL+LDEPT+ LD  A   L   L +     KT++   H  S
Sbjct: 208 SGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPS 267

Length = 659

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 43.7 bits (103), Expect = 6e-05
 Identities = 19/64 (29%), Positives = 33/64 (51%)

Query: 175 LPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK 234
           +   +L + ++ + Y  G   L+ +N  +      A++G NG GKST    L G L P+ 
Sbjct: 1   MEDYILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSS 60

Query: 235 GKVL 238
           G++L
Sbjct: 61  GRIL 64

Length = 283

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score = 44.4 bits (105), Expect = 7e-05
 Identities = 20/47 (42%), Positives = 28/47 (59%)

Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
           G +VLL+     ++   +V LVG NG GKST L LLK E++ + G  
Sbjct: 12  GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSY 58

Length = 638

>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 8/58 (13%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK----TLLVVSH 63
           SGG + R+++ARAL  +P +L+LDE T+ LD       +  LQ  +     T+L+++H
Sbjct: 619 SGGQKQRIAIARALVRKPRVLILDEATSALDAEC----EQLLQESRSRASRTVLLIAH 672

[Transport and binding proteins, Other]. Length = 711

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score = 44.1 bits (104), Expect = 7e-05
 Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 4/61 (6%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD-LNAVIWLDNYLQ---TWKKTLLVVSH 63
           E SGG + RV LARAL  EP +LL+DE  + LD L      D   +   T +KT++ ++H
Sbjct: 129 ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITH 188

Query: 64  D 64
           D
Sbjct: 189 D 189

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 44.0 bits (104), Expect = 7e-05
 Identities = 47/175 (26%), Positives = 85/175 (48%), Gaps = 18/175 (10%)

Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG--ELTPNKGKVLL-----EKVN 243
            GK +L+ ++F ++    + ++G +G GKS  +++L+G  +  P  G+++      EK  
Sbjct: 11  DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCG 70

Query: 244 FGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDD 303
           + ++  S+V    P   G    L   + +      +LR+  R RI    Q +   L+ DD
Sbjct: 71  Y-VERPSKVGEPCPVCGGT---LEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFA-LYGDD 125

Query: 304 TPCEYLMK-LFNLPYEKSR---RQLGMFGLPSYAHTIP--IRDLSGGQKARVALA 352
           T  + +++ L  + YE      R + +  +   +H I    RDLSGG+K RV LA
Sbjct: 126 TVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLA 180

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

 Score = 43.6 bits (103), Expect = 7e-05
 Identities = 45/148 (30%), Positives = 70/148 (47%), Gaps = 34/148 (22%)

Query: 234 KGKVLLEKVNFGLDMESR----VALVGPNGIGKSTFL---NLLK---------GELTPNK 277
            G+ +L     G+D+E +    VA++GP+G GK+T L   NLL+         G++T + 
Sbjct: 14  HGQTVLH----GIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDT 69

Query: 278 GELRKSPRLRIGKFDQHSG-----EHLFPDDTPCEYLMK----LFNLPYE----KSRRQL 324
                  +  I +  QH G      +LFP  T  E +++    +   P E    ++R  L
Sbjct: 70  ARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELL 129

Query: 325 GMFGLPSYAHTIPIRDLSGGQKARVALA 352
              GL     + P R LSGGQ+ RVA+A
Sbjct: 130 AKVGLAGKETSYP-RRLSGGQQQRVAIA 156

Length = 250

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score = 43.2 bits (102), Expect = 7e-05
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 14/68 (20%)

Query: 176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 235
              V  + DV+F    G++                L+G NG GK+T L ++   L P+ G
Sbjct: 12  GSKVQAVRDVSFEAEEGEI--------------TGLLGENGAGKTTLLRMIATLLIPDSG 57

Query: 236 KVLLEKVN 243
           KV ++ V+
Sbjct: 58  KVTIDGVD 65

Length = 245

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 44.1 bits (105), Expect = 7e-05
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)

Query: 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGK 236
            P L +  +T  +PG  V  + V+  +      AL+G NG GKST + +L G   P+ G+
Sbjct: 2   EPALEMRGITKRFPG-VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGE 60

Query: 237 VLL--EKVNFG 245
           + +  ++V   
Sbjct: 61  IRVDGKEVRIK 71

Length = 501

>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor

 Score = 43.2 bits (102), Expect = 7e-05
 Identities = 15/32 (46%), Positives = 25/32 (78%)

Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
           + ++GPNGIGK+TF+ +L G L P++G + +E
Sbjct: 28  IGILGPNGIGKTTFIKMLAGVLKPDEGDIEIE 59

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 44.5 bits (105), Expect = 7e-05
 Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 39/158 (24%)

Query: 214 PNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL 273
           PNG     F +     +TP     +L+ ++F L+    +A+ G  G GKS+ L ++ GEL
Sbjct: 423 PNG-DDGLFFSNFSLYVTP-----VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGEL 476

Query: 274 TPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK-------LFNLPYEKSRRQ--L 324
            P++G+++            HSG   F   T   ++M        +F L Y++ R    +
Sbjct: 477 EPSEGKIK------------HSGRISFSPQTS--WIMPGTIKDNIIFGLSYDEYRYTSVI 522

Query: 325 GMFGLPSYAHTIPIRD----------LSGGQKARVALA 352
               L       P +D          LSGGQ+AR++LA
Sbjct: 523 KACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLA 560

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.5 bits (102), Expect = 7e-05
 Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 6/102 (5%)

Query: 9   FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHDQS 66
            SGG + R+ +ARAL  +P +LL DEPT+ LD  A   ++  +   K   T+L+V+H+  
Sbjct: 162 LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQ 221

Query: 67  FLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEY 108
               +     ++ M +L  +    T+F    ++ + + T++Y
Sbjct: 222 QAARVSDYTAYMYMGELIEFGATDTIF----IKPKNKQTEDY 259

Length = 265

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 44.1 bits (105), Expect = 7e-05
 Identities = 44/151 (29%), Positives = 66/151 (43%), Gaps = 29/151 (19%)

Query: 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGK 236
            P L    +   +PG K L + ++F        AL+G NG GKST L +L G   P+ G 
Sbjct: 2   SPYLSFDGIGKTFPGVKAL-DDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGS 60

Query: 237 VLL--EKVNFGLDMESRVA----------LVGPNGIGKSTFLNLLKGELTPNKG------ 278
           +L+  +++ F     +  A          LV P     +   NL  G+L P+KG      
Sbjct: 61  ILIDGQEMRFASTTAALAAGVAIIYQELHLV-PE---MTVAENLYLGQL-PHKGGIVNRR 115

Query: 279 ELRKSPRLRIGKFDQHSGEHLFPDDTPCEYL 309
            L    R ++    +H G  + P DTP +YL
Sbjct: 116 LLNYEAREQL----EHLGVDIDP-DTPLKYL 141

Length = 501

>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein

 Score = 42.9 bits (101), Expect = 8e-05
 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD----LNAVIWLDNYLQTWKKTLLVVSH 63
           + SGG R RV+LAR L     +LLLDEP + LD       +  +       ++TLL+V+H
Sbjct: 128 QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTH 187

Query: 64  DQSFLNNICTDII 76
             S    I + I 
Sbjct: 188 HLSDARAIASQIA 200

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 31/76 (40%), Positives = 40/76 (52%), Gaps = 4/76 (5%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD--LNA--VIWLDNYLQTWKKTLLVVSH 63
           E SGG R RV+LAR L  E  +LLLDEP + LD  L A  +  +       K TLL+V+H
Sbjct: 129 ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTH 188

Query: 64  DQSFLNNICTDIIHLD 79
                  I   ++ LD
Sbjct: 189 HPEDAARIADRVVFLD 204

Length = 231

>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 43.3 bits (102), Expect = 8e-05
 Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 30/127 (23%)

Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELR---------KSP--------RLRIGK-FDQ 293
           + L+GP+G GKS+ L +L     P  G L          K+P        R  +G  F Q
Sbjct: 31  LVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQ 90

Query: 294 HSGEHLFPDDTPCEYL----MKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQ 345
           +   +L+P  T  E L     ++  L  +++  +    L    L  YA   P+  LSGGQ
Sbjct: 91  Y---NLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLH-LSGGQ 146

Query: 346 KARVALA 352
           + RVA+A
Sbjct: 147 QQRVAIA 153

Length = 242

>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKV 242
           GGK  LE +N  L+    + ++GP+G GK+T LNL+ G +    G + L+  
Sbjct: 12  GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGK 63

Length = 255

>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 22/167 (13%)

Query: 196 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV--LLEKVNFGLDMESRVA 253
           L+ V+  ++    +A++G  G GK+TF+  L   L P+ G +  + +        + +  
Sbjct: 23  LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82

Query: 254 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDT-------PC 306
           ++    I K+ F  + K +      E+R+    R+G   Q +   LF           P 
Sbjct: 83  VLEKLVIQKTRFKKIKKIK------EIRR----RVGVVFQFAEYQLFEQTIEKDIIFGPV 132

Query: 307 EYLMKLFNLPYEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALA 352
              +       +++ + + + GL  SY    P  +LSGGQK RVALA
Sbjct: 133 SMGVSK-EEAKKRAAKYIELVGLDESYLQRSPF-ELSGGQKRRVALA 177

Length = 305

>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.4 bits (102), Expect = 8e-05
 Identities = 28/108 (25%), Positives = 62/108 (57%), Gaps = 6/108 (5%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLV 60
           +KS  + SGG + R+ +AR + ++P ++L+DEPT+ LD  + + +++ +   KK  T+++
Sbjct: 142 KKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVI 201

Query: 61  VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEY 108
           V+H+    + +        M  L      F   +K++++ +K+ T++Y
Sbjct: 202 VTHNMQQASRVSDYTAFFLMGDLI----EFNKTEKIFLEPQKKETEDY 245

Length = 251

>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 43.2 bits (102), Expect = 8e-05
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 5/76 (6%)

Query: 9   FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLN---AVIWLDNYLQTWKKTLLVVSHDQ 65
           FSGG + RV++AR   ++  +LLLDEPT  LD      V+ L    +     L+ + HD+
Sbjct: 153 FSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDE 212

Query: 66  SFLNNICTDIIHLDMK 81
                +   +  LD+ 
Sbjct: 213 EVREAVADRL--LDVS 226

Length = 235

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score = 42.3 bits (100), Expect = 9e-05
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 12/64 (18%)

Query: 7   KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD-------LNAVIWLDNYLQTWKKTLL 59
           + FSGG R R++LAR L  +  ++LLDEPT  LD       L+ +     +     KTL+
Sbjct: 97  RRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLI-----FEVLKDKTLI 151

Query: 60  VVSH 63
            ++H
Sbjct: 152 WITH 155

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE

 Score = 42.9 bits (102), Expect = 9e-05
 Identities = 37/141 (26%), Positives = 52/141 (36%), Gaps = 48/141 (34%)

Query: 245 GLDMESR----VALVGPNGIGKSTFLNLLKGELTPNKGEL--------RKSPRLR----I 288
           G+ +E        ++G NG+GK+T L  L G L    G +        +  P  R    I
Sbjct: 18  GVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77

Query: 289 GKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIR--------- 339
               Q  G  +FP  T  E      NL         G+  LP  +  IP           
Sbjct: 78  AYVPQ--GREIFPRLTVEE------NL-------LTGLAALPRRSRKIPDEIYELFPVLK 122

Query: 340 --------DLSGGQKARVALA 352
                   DLSGGQ+ ++A+A
Sbjct: 123 EMLGRRGGDLSGGQQQQLAIA 143

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 6/78 (7%)

Query: 2   QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA--VIWLDNYLQTWKK--T 57
             K  +  SGG + ++SLA AL   P++LLLDEPT+ LD  +   IW  + +   +K  +
Sbjct: 127 ANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIW--DLILEVRKGRS 184

Query: 58  LLVVSHDQSFLNNICTDI 75
           +++ +H       +C  I
Sbjct: 185 IILTTHSMDEAEALCDRI 202

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 30/164 (18%), Positives = 63/164 (38%), Gaps = 38/164 (23%)

Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDME- 249
           G K +L+ ++  +        +GPNG GK+T + ++ G + P+ G++  +  ++  ++E 
Sbjct: 11  GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEA 70

Query: 250 -SRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEY 308
             R+                         G L ++P    G +   +             
Sbjct: 71  LRRI-------------------------GALIEAP----GFYPNLTARENL------RL 95

Query: 309 LMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
           L +L  +  ++    L + GL   A    ++  S G K R+ +A
Sbjct: 96  LARLLGIRKKRIDEVLDVVGLKDSAKK-KVKGFSLGMKQRLGIA 138

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 4/66 (6%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTL 58
            K+  E SGG + R++L R L   P +LLLDE T+ LD +    ++  +  +       +
Sbjct: 128 TKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAV 187

Query: 59  LVVSHD 64
           L ++HD
Sbjct: 188 LWITHD 193

Length = 223

>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 44/140 (31%), Positives = 60/140 (42%), Gaps = 33/140 (23%)

Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE-------LRKSPRLRIGKF 291
           L+ V+  +     VA+VG +G GKST L+LL G   P  GE       L K       K 
Sbjct: 21  LKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80

Query: 292 -DQHSG-----EHLFPDDTPCEYLMKLFNLPY-----------EKSRRQLGMFGLPSYAH 334
            ++  G      HL PD T  E +     +P            E++   L   GL    H
Sbjct: 81  RNKKLGFIYQFHHLLPDFTALENVA----MPLLIGKKSVKEAKERAYEMLEKVGL---EH 133

Query: 335 TIPIR--DLSGGQKARVALA 352
            I  R  +LSGG++ RVA+A
Sbjct: 134 RINHRPSELSGGERQRVAIA 153

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score = 42.8 bits (102), Expect = 1e-04
 Identities = 17/43 (39%), Positives = 23/43 (53%)

Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 281
           L  V+  +     VAL+G NG GK+T L  + G L P  G +R
Sbjct: 16  LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIR 58

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 14/101 (13%)

Query: 184 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTPN---KGKVL 238
           ++   Y G K  L+ +N  +      AL+GP+G GKST L  L    +L P    +GKVL
Sbjct: 6   NLNLFY-GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVL 64

Query: 239 LEKVNF---GLD---MESRVALV--GPNGIGKSTFLNLLKG 271
            +  +     +D   +  RV +V   PN    S + N+  G
Sbjct: 65  FDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYG 105

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 17/45 (37%), Positives = 26/45 (57%)

Query: 193 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
              L+ ++F ++    V  +GPNG GK+T L +L G L P  G+V
Sbjct: 34  VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEV 78

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 32/128 (25%)

Query: 252 VALVGPNGIGKSTF---LNLLK----GEL-----------TPNKGELRKSPRLRIGK-FD 292
           + L+GP+G GKS+    LNLL+    G L           TP+   +R+  R  +G  F 
Sbjct: 31  LVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL-RRNVGMVFQ 89

Query: 293 QHSGEHLFPDDTPCEYL----MKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGG 344
           Q+   +L+P  T  + L     ++  L  +++  +    L    L  YA   P+  LSGG
Sbjct: 90  QY---NLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLH-LSGG 145

Query: 345 QKARVALA 352
           Q+ RVA+A
Sbjct: 146 QQQRVAIA 153

Length = 242

>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 21/128 (16%)

Query: 242 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFP 301
            NF L      AL GP+G GK++ +N++ G   P++G +  + R+     D   G  L P
Sbjct: 17  ANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVL---VDAEKGIFLPP 73

Query: 302 DDTPCEYLM---KLF-------NLPY--EKSRRQ-----LGMFGLPSYAHTIPIRDLSGG 344
           +     Y+    +LF       NL Y   KS R      + + G+       P   LSGG
Sbjct: 74  EKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGT-LSGG 132

Query: 345 QKARVALA 352
           +K RVA+ 
Sbjct: 133 EKQRVAIG 140

Length = 352

>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 22/136 (16%)

Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR----------KSP 284
            KV++  ++F +       L+GPNG GKST   +L G ++P++G++           +  
Sbjct: 16  DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLA 75

Query: 285 RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ--------LGMFGLPSYAHTI 336
           R+ IG   Q   ++L P+ T  E L+ +F   +  S R+        L    L S A   
Sbjct: 76  RVAIGVVPQF--DNLDPEFTVRENLL-VFGRYFGMSTREIEAVIPSLLEFARLESKADV- 131

Query: 337 PIRDLSGGQKARVALA 352
            +  LSGG K R+ LA
Sbjct: 132 RVALLSGGMKRRLTLA 147

This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 17/31 (54%), Positives = 23/31 (74%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
           SGG + R+++ARAL   P +LLLDE T+ LD
Sbjct: 141 SGGQKQRIAIARALLRNPKILLLDEATSALD 171

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 25/124 (20%)

Query: 252 VALVGPNGIGKSTFLNLLKGELT---------PNKGELRKSPRLRIGKFDQHSGEHLFPD 302
           +A++GP+G GKST LN L G +           N  +  K    R G   Q   + L+P 
Sbjct: 97  LAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQD--DILYPH 154

Query: 303 DTPCEYLM--KLFNLPYEKSRRQ--------LGMFGLPSYAHTIP----IRDLSGGQKAR 348
            T  E L+   L  LP   ++++        +   GL    +TI     IR +SGG++ R
Sbjct: 155 LTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKR 214

Query: 349 VALA 352
           V++A
Sbjct: 215 VSIA 218

Length = 659

>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 2/64 (3%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLV 60
            KS    SGG + R+ +ARAL ++P +LL+DEP + LD  A + ++  + + +   T+ +
Sbjct: 145 NKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAI 204

Query: 61  VSHD 64
           V+H+
Sbjct: 205 VTHN 208

Length = 259

>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 22/63 (34%), Positives = 40/63 (63%), Gaps = 2/63 (3%)

Query: 4   KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVV 61
           KS    SGG + R+ +AR L +EP ++L+DEP + LD  + + ++  +Q  K+  T+ +V
Sbjct: 143 KSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIV 202

Query: 62  SHD 64
           +H+
Sbjct: 203 THN 205

Length = 251

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 41.6 bits (97), Expect = 1e-04
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
           + +VGP G GK+T    L  EL P  G V+ 
Sbjct: 5   ILIVGPPGSGKTTLARALARELGPPGGGVIY 35

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 21/57 (36%), Positives = 38/57 (66%), Gaps = 2/57 (3%)

Query: 9   FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSH 63
            SGG + R+ +AR + +EP ++L+DEPT+ LD  A   ++  ++  KK  T+++V+H
Sbjct: 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTH 202

Length = 249

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 20/56 (35%), Positives = 31/56 (55%)

Query: 184 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
           DV++ Y  G  +L  ++  + M S+  +VG +G GKST   LL G      G++LL
Sbjct: 478 DVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILL 533

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 3/63 (4%)

Query: 4   KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK---TLLV 60
           K  K+FS G + R+ +A AL   P LL+LDEPTN LD   +  L   ++++ +   T+++
Sbjct: 120 KKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVIL 179

Query: 61  VSH 63
            SH
Sbjct: 180 SSH 182

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 19/64 (29%), Positives = 40/64 (62%), Gaps = 2/64 (3%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLV 60
           +KS    SGG + R+ +AR + + P ++L+DEP + LD  +   +++ +   K+  T+++
Sbjct: 141 DKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVI 200

Query: 61  VSHD 64
           V+H+
Sbjct: 201 VTHN 204

Length = 250

>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 17/38 (44%), Positives = 21/38 (55%)

Query: 7   KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAV 44
              S G + RV+LAR L     + +LDEPT  LD  AV
Sbjct: 126 GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAV 163

Length = 207

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score = 42.9 bits (102), Expect = 2e-04
 Identities = 17/49 (34%), Positives = 26/49 (53%)

Query: 232 PNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 280
           P +    L+ V+  +    +VA++G  G GKST L LL G   P +G +
Sbjct: 474 PGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSV 522

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 16/31 (51%), Positives = 23/31 (74%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
           SGG R R+++ARA+  +  +LLLDE T+ LD
Sbjct: 478 SGGQRQRIAIARAILKDAPILLLDEATSALD 508

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 8/59 (13%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAV----IWLDNYLQTWK-KTLLVVSH 63
           SGG + R+ +ARAL  +  LLLLDEPT  LD  A     I L+   +  + KT+L+++H
Sbjct: 477 SGGEQRRLGIARALLHDAPLLLLDEPTEGLD--AETERQI-LELLAEHAQNKTVLMITH 532

Length = 574

>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 243 NFGLDME--SRVALVGPNGIGKSTFLNLLKGELTPNKGELR 281
           NF L ++   RVALVG +G GKST   L+ G   P  GE+ 
Sbjct: 497 NFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEIL 537

This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710

>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 4/50 (8%)

Query: 234 KGKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKGELR 281
              ++L+ +N  L + SR  VALVG  G GKST  +LL G     +GE+R
Sbjct: 352 DDNLVLQNIN--LSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIR 399

Length = 592

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 15/27 (55%), Positives = 20/27 (74%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPT 36
           SGG +  +++ARAL   P LLLLDEP+
Sbjct: 138 SGGEQQMLAIARALMSRPKLLLLDEPS 164

Length = 237

>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
           P+L L +V +   G   +L  ++F L       + GP+G GKST L ++   ++P  G +
Sbjct: 6   PLLQLQNVGY-LAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL 64

Query: 238 LLE 240
           L E
Sbjct: 65  LFE 67

Length = 225

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 40.9 bits (97), Expect = 2e-04
 Identities = 14/30 (46%), Positives = 19/30 (63%)

Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELR 281
            AL+G NG GKST + +L G   P+ GE+ 
Sbjct: 29  HALLGENGAGKSTLMKILSGLYKPDSGEIL 58

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 40.9 bits (97), Expect = 2e-04
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK---TLLVVSH 63
           S G R  V +ARAL     LL+LDEPT  L    V  L   ++  +     ++ +SH
Sbjct: 84  SVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISH 140

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 20/131 (15%)

Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR-------KSPRL---RI 288
           ++ VNF +        +GPNG GK+T + +L   L P  G  R       + PR     I
Sbjct: 9   VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSI 68

Query: 289 GKFDQHSGEHLFPDDTPCEYLM---KLFNLPY----EKSRRQLGMFGLPSYAHTIPIRDL 341
           G   Q++   +  D T  E L    +L+ LP     E++   L +F L   A   P+   
Sbjct: 69  GIVPQYAS--VDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFEL-GEAADRPVGTY 125

Query: 342 SGGQKARVALA 352
           SGG + R+ +A
Sbjct: 126 SGGMRRRLDIA 136

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 16/49 (32%), Positives = 29/49 (59%)

Query: 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG 228
           + L +++   P G+VLL+ ++F +    R+ + GP+G GKS+    L G
Sbjct: 1   IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAG 49

Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166

>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 25/133 (18%)

Query: 241 KVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLF 300
             +F L  +   A+ G +G GK+T + L+ G   P++GE+  + R     FD   G  L 
Sbjct: 15  DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTL---FDSRKGIFLP 71

Query: 301 PDDTPCEYLMK---LF-------NLPYEKSR-----------RQLGMFGLPSYAHTIPIR 339
           P+     Y+ +   LF       NL Y   R           R + + G+      +P  
Sbjct: 72  PEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLP-G 130

Query: 340 DLSGGQKARVALA 352
            LSGG+K RVA+ 
Sbjct: 131 RLSGGEKQRVAIG 143

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354

>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 13/96 (13%)

Query: 189 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTPN---KGKVLLEKVN 243
           + G    L  ++   +     AL+GP+G GKSTFL  L    +L P    +G++LL+  N
Sbjct: 15  FYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGEN 74

Query: 244 F------GLDMESRVALV--GPNGIGKSTFLNLLKG 271
                   +++  RV +V   PN   KS F N+  G
Sbjct: 75  IYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYG 110

Length = 253

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 1/55 (1%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLD-LNAVIWLDNYLQTWKKTLLVVSH 63
           SGG + R++LARAL  +  +L+LDE T++LD +     ++N L    KT++ V+H
Sbjct: 613 SGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAH 667

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 16/50 (32%), Positives = 28/50 (56%)

Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
           G +  +  ++  +   S   L+GPNG GKST L ++ G L P  G+++ +
Sbjct: 11  GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFD 60

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 182 LHDVTFGYPGGKVLLEKVNFGLDME----SRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
           L +V++ Y  G     +  F +++     S  A +G  G GKST + LL G   P +G V
Sbjct: 5   LQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSV 64

Query: 238 LLEKV 242
            ++  
Sbjct: 65  RVDDT 69

Length = 280

>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 6/102 (5%)

Query: 9   FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHDQS 66
            SGG R R+ +ARAL ++P +LL+DEPT ++D      ++  L   KK  T+++V+H  +
Sbjct: 150 LSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPA 209

Query: 67  FLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEY 108
               +   +  L + KL          +K++     ELT++Y
Sbjct: 210 QAARVSDYVAFLYLGKLIEVGPT----RKVFENPEHELTEKY 247

Length = 253

>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 178 PVLGLHDVTFGYPGGKVL-LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGK 236
            ++ +  ++F YP      L+ V+F +     VA+VG NG GKST   LL G L P  G 
Sbjct: 4   EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGT 63

Query: 237 V 237
           +
Sbjct: 64  I 64

Length = 279

>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 20/36 (55%), Positives = 23/36 (63%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVI 45
           SGG R RV +ARAL   P  +LLDEP   +D  AVI
Sbjct: 141 SGGERRRVEIARALAANPKFILLDEPFAGVDPIAVI 176

Length = 243

>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 33/134 (24%)

Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIG-------- 289
           +L+ +N  ++    +A+ G  G GK++ L L+ GEL P++G+++ S R+           
Sbjct: 52  VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMP 111

Query: 290 -----------KFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPI 338
                       +D++  + +      C+    +   P EK    LG  G+         
Sbjct: 112 GTIKENIIFGVSYDEYRYKSVV---KACQLEEDITKFP-EKDNTVLGEGGI--------- 158

Query: 339 RDLSGGQKARVALA 352
             LSGGQ+AR++LA
Sbjct: 159 -TLSGGQRARISLA 171

The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 17/26 (65%), Positives = 18/26 (69%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEP 35
           SGG R RV +ARAL   P  LLLDEP
Sbjct: 135 SGGERRRVEIARALATNPKFLLLDEP 160

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 4/68 (5%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTL----LVVSH 63
           EFSGG R R+ +ARAL L P +++ DE  + LD++    + N L   ++      L +SH
Sbjct: 463 EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISH 522

Query: 64  DQSFLNNI 71
           D + +  I
Sbjct: 523 DMAVVERI 530

Length = 623

>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 1/62 (1%)

Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
           P+L L  ++  + G K L   ++  +D      ++GPNG GK+T ++++ G+  P++G V
Sbjct: 1   PILYLEGLSVSFDGFKAL-NDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSV 59

Query: 238 LL 239
           L 
Sbjct: 60  LF 61

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242

>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 30/82 (36%), Positives = 39/82 (47%), Gaps = 7/82 (8%)

Query: 1   MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK---- 56
           + ++S    SGG R R  +A  L  E  ++LLDEPT  LD++  I L   L    +    
Sbjct: 136 LADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGY 195

Query: 57  TLLVVSHDQSFLNNICTDIIHL 78
           TL  V HD   LN  C    HL
Sbjct: 196 TLAAVLHD---LNQACRYASHL 214

Length = 265

>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 235
             P+L +  ++  Y G       V+F L     + +VG +G GK+T L  + G LTP+ G
Sbjct: 3   DKPLLSVSGLSKLY-GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAG 61

Query: 236 KV 237
            V
Sbjct: 62  TV 63

Length = 258

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 19/43 (44%), Positives = 27/43 (62%)

Query: 236 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 278
           +VLL+     ++   +V LVG NG GKST L LLK E++ + G
Sbjct: 14  RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGG 56

Length = 638

>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 17/40 (42%), Positives = 22/40 (55%)

Query: 199 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
           ++F +     V  +G NG GKST L +L G L P  GKV 
Sbjct: 43  ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR 82

Length = 325

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 42/165 (25%), Positives = 60/165 (36%), Gaps = 69/165 (41%)

Query: 232 PNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKF 291
           P  G  +L  ++  +     VALVGP+G GKST +NL+              PR     +
Sbjct: 11  PGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLI--------------PRF----Y 52

Query: 292 DQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGM-----------------FGLP---- 330
           D  SG  L       +Y   L +L     RRQ+G+                 +G P    
Sbjct: 53  DVDSGRILIDGHDVRDY--TLASL-----RRQIGLVSQDVFLFNDTVAENIAYGRPGATR 105

Query: 331 ---------SYAHTI----------PIRD----LSGGQKARVALA 352
                    + AH             I +    LSGGQ+ R+A+A
Sbjct: 106 EEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIA 150

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score = 41.3 bits (98), Expect = 3e-04
 Identities = 15/27 (55%), Positives = 20/27 (74%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPT 36
           SGG +  +++ARAL   P LLLLDEP+
Sbjct: 134 SGGEQQMLAIARALMSRPKLLLLDEPS 160

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 38/117 (32%), Positives = 52/117 (44%), Gaps = 19/117 (16%)

Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGEL----RKSPRLRIGKFD-----QHSGEHLFPD 302
           V L+GP+G GK+T L ++ G      G +    R   RL   K D     Q     LFP+
Sbjct: 33  VCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYA--LFPN 90

Query: 303 DTPCEYL-MKLFNLPYEKSRRQ------LGMFGLPSYAHTIPIRDLSGGQKARVALA 352
            T  + +   L N    ++         L + GLP      P + LSGGQ+ RVALA
Sbjct: 91  LTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQ-LSGGQQQRVALA 146

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 4/78 (5%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD----LNAVIWLDNYLQTWKKTL 58
           E+   E SGG   RV++A AL  E  L LLDEP+ +LD    +     +  +++  +KT 
Sbjct: 450 ERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTA 509

Query: 59  LVVSHDQSFLNNICTDII 76
           LVV HD   ++ +   +I
Sbjct: 510 LVVDHDIYMIDYVSDRLI 527

Length = 591

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 22/136 (16%)

Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR----------KSP 284
            K ++  ++F +       L+GPNG GKST   ++ G  +P+ G++           +  
Sbjct: 53  DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLA 112

Query: 285 RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ--------LGMFGLPSYAHTI 336
           R RIG   Q   ++L  + T  E L+ +F   +  S R+        L    L S A   
Sbjct: 113 RARIGVVPQF--DNLDLEFTVRENLL-VFGRYFGMSTREIEAVIPSLLEFARLESKADA- 168

Query: 337 PIRDLSGGQKARVALA 352
            + DLSGG K R+ LA
Sbjct: 169 RVSDLSGGMKRRLTLA 184

Length = 340

>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 4/66 (6%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD----LNAVIWLDNYLQTWKKTL 58
           ++   E SGG   RV++A  L  +  + LLDEP+ +LD    L A   +  + +  +KT 
Sbjct: 110 DREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTA 169

Query: 59  LVVSHD 64
            VV HD
Sbjct: 170 FVVEHD 175

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246

>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 42/164 (25%), Positives = 63/164 (38%), Gaps = 31/164 (18%)

Query: 223 LNLLKGELTPNKG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 278
           ++L     T  KG    K  L  ++  +     V ++G NG GKST LN + G+L P  G
Sbjct: 2   ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSG 61

Query: 279 EL--------RKSPR---LRIGKFDQHSGEHLFPDDTPCEYLM------KLFNLPYEKSR 321
           ++        +KS       + +  Q       P+ T  E L       K   L    + 
Sbjct: 62  QILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNE 121

Query: 322 RQLGMF---------GLPSYAHTIPIRDLSGGQKARVALAELTL 356
           R+   F         GL +      I  LSGGQ+  ++L   TL
Sbjct: 122 RRRSSFRERLARLGLGLENRLSD-RIGLLSGGQRQALSLLMATL 164

Length = 263

>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 16/27 (59%), Positives = 21/27 (77%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPT 36
           SGG + ++++ARAL   P LLLLDEPT
Sbjct: 133 SGGQQQQLAIARALVTRPKLLLLDEPT 159

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230

>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 24/144 (16%)

Query: 231 TPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--------- 281
           TP +G+ L + VN  ++  S  A +G  G GKST + LL G   P +G +R         
Sbjct: 16  TPFEGRALFD-VNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITST 74

Query: 282 ------KSPRLRIGKFDQHSGEHLFPDDTPCEYLM---KLFNLPYEK----SRRQLGMFG 328
                 K  R ++G   Q     LF ++T  + +    + F +  E+    +R +L + G
Sbjct: 75  SKNKDIKQIRKKVGLVFQFPESQLF-EETVLKDVAFGPQNFGVSQEEAEALAREKLALVG 133

Query: 329 LPSYAHTIPIRDLSGGQKARVALA 352
           +          +LSGGQ  RVA+A
Sbjct: 134 ISESLFEKNPFELSGGQMRRVAIA 157

Length = 280

>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 41/174 (23%), Positives = 67/174 (38%), Gaps = 49/174 (28%)

Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF-GLDME 249
             + ++  V+  ++    V L+GPNG GK+T   ++ G + P+ GK+LL+  +   L M 
Sbjct: 15  KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMH 74

Query: 250 SRVALVGPNGIG-----KSTFLNL-----LKGELTPNKGELR-KSPRLRIGKFDQHSGEH 298
            R  L    GIG      S F  L     +   L     E+R K  +    K        
Sbjct: 75  KRARL----GIGYLPQEASIFRKLTVEDNIMAVL-----EIREKDLKKAERK-------- 117

Query: 299 LFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
                   + L++ F++     R                   LSGG++ RV +A
Sbjct: 118 -----EELDALLEEFHI--THLRDSKAYS-------------LSGGERRRVEIA 151

Length = 243

>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 39/122 (31%), Positives = 55/122 (45%), Gaps = 25/122 (20%)

Query: 253 ALVGPNGIGKSTFLNLLKGELTPNKGE----------LRKS----PRLRIGKFDQHSGEH 298
           A++GP+GIGK+T L L+ G++ P+ GE          + +S     R R+    Q SG  
Sbjct: 37  AIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQ-SGA- 94

Query: 299 LFPDDTPCEY----LMKLFNLPYEKSRRQLGM----FGLPSYAHTIPIRDLSGGQKARVA 350
           LF D    +     L +   LP       + M     GL   A  +P  +LSGG   R A
Sbjct: 95  LFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMP-SELSGGMARRAA 153

Query: 351 LA 352
           LA
Sbjct: 154 LA 155

Length = 269

>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 9   FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHD 64
            SGG + R+ +ARA+  EP +LLLDEP + LD  A   ++  +   KK  T+ +V+H+
Sbjct: 150 LSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHN 207

Length = 261

>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 45/149 (30%), Positives = 61/149 (40%), Gaps = 34/149 (22%)

Query: 231 TPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--------- 281
           TP + + L + VN  +   S VA++G  G GKST L  L G L P  G +          
Sbjct: 16  TPFERRALYD-VNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAG 74

Query: 282 ------KSPRLRIGKFDQHSGEHLFPDDTPCEYLMK-------LFNLPYE----KSRRQL 324
                 K  R ++G   Q     LF      E + K        F +  E    K+R  +
Sbjct: 75  KKNKKLKPLRKKVGIVFQFPEHQLFE-----ETVEKDICFGPMNFGVSEEDAKQKAREMI 129

Query: 325 GMFGLP-SYAHTIPIRDLSGGQKARVALA 352
            + GLP       P  +LSGGQ  RVA+A
Sbjct: 130 ELVGLPEELLARSPF-ELSGGQMRRVAIA 157

Length = 290

>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 21/129 (16%)

Query: 241 KVNFGLDMESR----VALVGPNGIGKST----FLNLLK---GELTPNKGELRKSPRLRIG 289
           K    +  E        L+GPNG GK+T     L LL+   GE+T N G L +  + RIG
Sbjct: 16  KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIG 75

Query: 290 KFDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQLGM----FGLPSYAHTIPIRDLS 342
              +  G  L+P  T  +   YL +L  +P  + +++L        +        I++LS
Sbjct: 76  YLPEERG--LYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTK-KIKELS 132

Query: 343 GGQKARVAL 351
            G + ++  
Sbjct: 133 KGNQQKIQF 141

Length = 300

>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 41.6 bits (97), Expect = 3e-04
 Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 3/64 (4%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK---KTLL 59
           EKS  E SGG   RV++A  L +EP +L+LDEPT  LD  A I +    ++     +T++
Sbjct: 139 EKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVV 198

Query: 60  VVSH 63
           +V+H
Sbjct: 199 LVTH 202

Length = 288

>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 23/136 (16%)

Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR---------------KS 283
           L+ ++F L+  S VALVG  G GKST +      L P+ G +                K 
Sbjct: 23  LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82

Query: 284 PRLRIGKFDQHSGEHLFPDDTPCEYLM---KLFNLPYEKSRRQ----LGMFGLPSYAHTI 336
            R ++    Q     LF ++T  + +    K F    ++++ +    L   GL     + 
Sbjct: 83  LRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISK 141

Query: 337 PIRDLSGGQKARVALA 352
              +LSGGQ  RVA+A
Sbjct: 142 SPFELSGGQMRRVAIA 157

Length = 287

>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 12/104 (11%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHDQSF 67
           SGG + R+ +AR L + P ++L+DEP + LD  A   +++ ++  KK  T+++V+H+   
Sbjct: 151 SGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQ 210

Query: 68  LNNICTDIIHLDMKKLFYYKGNFTLFKK---MYVQKRKELTKEY 108
              + +D         F Y G    F K   ++    +ELT+ Y
Sbjct: 211 AARV-SDYTG------FMYLGKLIEFDKTTQIFENPHEELTENY 247

Length = 253

>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C

 Score = 41.2 bits (96), Expect = 3e-04
 Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 5/65 (7%)

Query: 9   FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDN-----YLQTWKKTLLVVSH 63
            SGG R R+ +ARAL+    ++ LD+P + LD++    L       +LQ  K+TL++V+H
Sbjct: 141 LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTH 200

Query: 64  DQSFL 68
              +L
Sbjct: 201 KLQYL 205

The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218

>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 12/104 (11%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHDQSF 67
           SGG + RV +AR L   P ++LLDEPT+ LD  +   ++  L   K   T+L+V+     
Sbjct: 150 SGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQ 209

Query: 68  LNNICTDIIHLDMKKLFYYKGNFTLF---KKMYVQKRKELTKEY 108
            + I         +  F+  G+   +   K+M++  + + T++Y
Sbjct: 210 ASRISD-------RTGFFLDGDLIEYNDTKQMFMNPKHKETEDY 246

Length = 252

>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKV 242
           + +VGPNG GK+T + +L G+L PN      + +
Sbjct: 28  IGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI 61

The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177

>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 14/87 (16%)

Query: 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESR----VALVGPNGIGKSTFLNLLKGELTPNKG 235
           L + ++   Y    +L      G+ +E        ++G NG+GK+T L  L G L    G
Sbjct: 1   LEVSNLNVYYGQSHIL-----RGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSG 55

Query: 236 KVLLEKVNF-GLDMESRVALVGPNGIG 261
            + L+  +   L    R       GI 
Sbjct: 56  SIRLDGEDITKLPPHERAR----AGIA 78

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230

>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 44/134 (32%), Positives = 57/134 (42%), Gaps = 20/134 (14%)

Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE-------LRKSPR----L 286
           +L+ +N    +     LVG NG GKST    L G L P KG        L  S R    L
Sbjct: 16  VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAL 75

Query: 287 R--IGKFDQHSGEHLFPDDTPCEYLMKLFNL---PYEKSRR---QLGMFGLPSYAHTIPI 338
           R  +    Q   + +F  D   +    L NL     E +RR    L +     + H  PI
Sbjct: 76  RQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQ-PI 134

Query: 339 RDLSGGQKARVALA 352
           + LS GQK RVA+A
Sbjct: 135 QCLSHGQKKRVAIA 148

Length = 271

>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 4/60 (6%)

Query: 9   FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTL----LVVSHD 64
           FSGG + R+ +AR L   P L+ +DEPT  LD++    L + L+   + L    ++V+HD
Sbjct: 149 FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHD 208

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253

>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 4/79 (5%)

Query: 9   FSGGWRIRVSLARALFLEPTLLLLDEPTNHLD----LNAVIWLDNYLQTWKKTLLVVSHD 64
            SGG + RV++ARAL   P +LL DE T+ LD     + +  L    +    T+L+++H+
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHE 200

Query: 65  QSFLNNICTDIIHLDMKKL 83
              +  IC  +  +   +L
Sbjct: 201 MDVVKRICDCVAVISNGEL 219

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343

>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 30/79 (37%), Positives = 40/79 (50%), Gaps = 17/79 (21%)

Query: 3   EKSTKEFSGG-WRIRVSLARALFLE--PT------LLLLDEPTNHLDLNAVIWLDNYLQT 53
            +S  + SGG W+ RV LA A+ L+  P       LLLLDEP N LD+     LD  L  
Sbjct: 121 GRSVNQLSGGEWQ-RVRLA-AVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSE 178

Query: 54  WKK---TLLVVSHDQSFLN 69
             +    +++ SHD   LN
Sbjct: 179 LCQQGIAVVMSSHD---LN 194

Length = 248

>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 3/68 (4%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA---VIWLDNYLQTWKKTLLVVSHD 64
           E SGG + RV LARA+  +  ++LLDEP   +D+     +I L   L+   KT+LV +H+
Sbjct: 142 ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHN 201

Query: 65  QSFLNNIC 72
              +   C
Sbjct: 202 LGSVTEFC 209

Length = 272

>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 3/63 (4%)

Query: 184 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL--EK 241
           +++  +PG K L + VN  +   S  AL+G NG GKST L  L G    + G +L   ++
Sbjct: 3   NISKSFPGVKAL-DNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKE 61

Query: 242 VNF 244
           ++F
Sbjct: 62  IDF 64

Length = 491

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 40.9 bits (97), Expect = 5e-04
 Identities = 20/40 (50%), Positives = 23/40 (57%), Gaps = 6/40 (15%)

Query: 8   EFSGGWRIRVSLARAL------FLEPTLLLLDEPTNHLDL 41
           + SGG + RV LAR L         P  LLLDEPT+ LDL
Sbjct: 134 QLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL 173

Length = 258

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 19/130 (14%)

Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR---------KSPRLRIG 289
           L+ V+  ++      ++GP G GKS  L  + G + P+ G++             +  I 
Sbjct: 15  LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDIS 74

Query: 290 KFDQHSGEHLFPDDT---PCEYLMKLFNLPYEKSRRQL----GMFGLPSYAHTIPIRDLS 342
              Q     LFP  T      Y +K   +  ++  R++     M G+    +  P   LS
Sbjct: 75  YVPQ--NYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPET-LS 131

Query: 343 GGQKARVALA 352
           GG++ RVA+A
Sbjct: 132 GGEQQRVAIA 141

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 6/79 (7%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD----LNAVIWLDNYLQTWKKTL 58
           ++   E SGG   RV++A AL  +  +   DEP+++LD    LNA   +    +   K +
Sbjct: 208 DRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAED-GKYV 266

Query: 59  LVVSHDQSFLNNICTDIIH 77
           +VV HD + L+ + +D +H
Sbjct: 267 IVVEHDLAVLDYL-SDFVH 284

Length = 591

>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
           SGG R R+++ARAL   P +L+ DE T+ LD
Sbjct: 140 SGGQRQRIAIARALIHNPRILIFDEATSALD 170

The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237

>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 16/32 (50%), Positives = 21/32 (65%)

Query: 9   FSGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
           FSGG + R+ +AR L   P L+ +DEPT  LD
Sbjct: 152 FSGGMQQRLQIARNLVTHPRLVFMDEPTGGLD 183

Length = 258

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 18/33 (54%), Positives = 23/33 (69%)

Query: 9   FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDL 41
            SGG R R+SLARA++ +  L LLD P  HLD+
Sbjct: 549 LSGGQRARISLARAVYKDADLYLLDSPFTHLDV 581

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional

 Score = 41.1 bits (96), Expect = 5e-04
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 185 VTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
           +T GY G   + E +   +      A++GPNG GKST L  L   +TP  G V L+
Sbjct: 13  LTLGY-GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLD 67

Length = 265

>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 14/60 (23%)

Query: 184 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN 243
           +++   P GK+               A++GP+GIGK+T L L+ G++ P+ G++L +  N
Sbjct: 25  NISLTVPRGKI--------------TAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGEN 70

Length = 269

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 235
            PP+L    ++  Y G +VL + ++F L      AL+G NG GKST + ++ G + P+ G
Sbjct: 8   APPLLCARSISKQYSGVEVL-KGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSG 66

Query: 236 KVLLEKVNF 244
            + +     
Sbjct: 67  TLEIGGNPC 75

Length = 510

>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.7 bits (95), Expect = 5e-04
 Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 2/58 (3%)

Query: 9   FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHD 64
            SGG + R+ +ARAL   P +LL+DEPT+ LD  +   ++  +   K+  T+++V+H+
Sbjct: 156 LSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHN 213

Length = 259

>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 6/45 (13%)

Query: 3   EKSTKEFSGGWRIRVSLARAL------FLEPTLLLLDEPTNHLDL 41
            +  +  SGG + RV LAR L            L LDEPT+ LD+
Sbjct: 130 GRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDI 174

Length = 259

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 7/73 (9%)

Query: 184 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN 243
            ++F Y G +  L+ V+F +     VAL+GPNG GKST  +LL       +G++    V 
Sbjct: 6   GLSFRY-GARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQI---SVA 61

Query: 244 FGLDM--ESRVAL 254
            G D+    R AL
Sbjct: 62  -GHDLRRAPRAAL 73

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score = 41.0 bits (96), Expect = 6e-04
 Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 1/96 (1%)

Query: 142 RKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNF 201
           R   ++         +E+  + I + +   P  +    + L  V+  Y G K ++  ++F
Sbjct: 4   RAVAEEAPRRLELSPIERKHQGISEAKASIPGSMSTVAIDLAGVSKSY-GDKAVVNGLSF 62

Query: 202 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
            +       L+GPNG GKST   ++ G  +P+ GK+
Sbjct: 63  TVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI 98

Length = 340

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter

 Score = 41.3 bits (97), Expect = 6e-04
 Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 8/84 (9%)

Query: 218 GKSTFLNLLKGELTPNK-------GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK 270
            K T LN L G++  N        G  +L  ++  + M S+  +VG +G GKST   LL 
Sbjct: 462 KKRTELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLV 521

Query: 271 GELTPNKGELRKSPRLRIGKFDQH 294
           G      GE+  +    +   D+H
Sbjct: 522 GFFQARSGEILLNGFS-LKDIDRH 544

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708

>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 17/32 (53%), Positives = 23/32 (71%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLDL 41
           SGG R R+SLARA++ +  L LLD P  +LD+
Sbjct: 161 SGGQRARISLARAVYKDADLYLLDSPFGYLDV 192

The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282

>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 3/60 (5%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA---VIWLDNYLQTWKKTLLVVSHD 64
           + SGG + RVS+ARAL     ++L DEPT  LD ++   V+ + + L+    T+++V+HD
Sbjct: 144 QLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHD 203

Length = 648

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 18/47 (38%), Positives = 29/47 (61%)

Query: 195 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241
           LL+     ++   RV LVG NG GKST + +L GE+  + G+++ E+
Sbjct: 18  LLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQ 64

Length = 635

>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 44/139 (31%), Positives = 58/139 (41%), Gaps = 39/139 (28%)

Query: 243 NFGLDMES--RVALVGPNGIGKSTFLNLLKGELTPNKGELRKS----PRL-----RIGKF 291
           +  LD+ S   VAL+GP+G GK+T L ++ G      G +R       RL     ++G  
Sbjct: 20  DISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFV 79

Query: 292 DQHSGEHLFPDDTPCEYLMKLFN--------LPY----------EKSRRQLGMFGLPSYA 333
            QH    LF         M +F+        LP            K  + L M  L   A
Sbjct: 80  FQHYA--LFRH-------MTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA 130

Query: 334 HTIPIRDLSGGQKARVALA 352
              P + LSGGQK RVALA
Sbjct: 131 DRYPAQ-LSGGQKQRVALA 148

Length = 353

>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 40.5 bits (95), Expect = 7e-04
 Identities = 20/38 (52%), Positives = 26/38 (68%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
           EK+  E SGG   RV++A  L +EP +L+LDEPT  LD
Sbjct: 140 EKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLD 177

Length = 280

>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.4 bits (94), Expect = 7e-04
 Identities = 20/58 (34%), Positives = 38/58 (65%), Gaps = 2/58 (3%)

Query: 9   FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHD 64
            SGG + R+ +AR L ++P ++L DEPT+ LD  +   +++ +   KK  T+++V+H+
Sbjct: 155 LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHN 212

Length = 258

>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.4 bits (94), Expect = 7e-04
 Identities = 19/32 (59%), Positives = 25/32 (78%)

Query: 9   FSGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
            SGG + R+ +ARAL ++P LLLLDEPT+ LD
Sbjct: 143 LSGGQQQRLCIARALAIKPKLLLLDEPTSALD 174

Length = 246

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score = 39.9 bits (94), Expect = 8e-04
 Identities = 18/50 (36%), Positives = 26/50 (52%)

Query: 232 PNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 281
           PN+    L+ V+  +    +VA++G  G GKST L LL G   P  G + 
Sbjct: 13  PNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL 62

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component

 Score = 39.8 bits (94), Expect = 8e-04
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG--ELTPNKGKVLLEKVNFGLDM 248
           GGK +L+ VN  +      AL+GPNG GKST    + G  +    +G++L +  +   D+
Sbjct: 11  GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDI-TDL 69

Query: 249 E 249
            
Sbjct: 70  P 70

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 41.1 bits (97), Expect = 8e-04
 Identities = 38/121 (31%), Positives = 52/121 (42%), Gaps = 23/121 (19%)

Query: 253 ALVGPNGIGKSTFLNLLKGELTPNKGELR---KSPRLRIGKFDQHSG------E-HLFPD 302
           AL+G NG GKST L +L G   P+ G +    +  R         +G      E HL P+
Sbjct: 34  ALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPE 93

Query: 303 DTPCEYLMKLFNLP-----------YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVAL 351
            T  E L  L  LP             ++R QL   G+     T P++ LS GQ+  V +
Sbjct: 94  MTVAENLY-LGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDT-PLKYLSIGQRQMVEI 151

Query: 352 A 352
           A
Sbjct: 152 A 152

Length = 501

>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.3 bits (94), Expect = 8e-04
 Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 12/106 (11%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHDQ 65
           + SGG + R+ +ARAL  +P +LL DEPT +LD      +++     KK  T+++V+H  
Sbjct: 146 KLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFP 205

Query: 66  SFLNNICTDIIHLDMKKLFYYKGNFTLF---KKMYVQKRKELTKEY 108
                I +D +       F YKG    +   ++++   R ELT++Y
Sbjct: 206 QQAARI-SDYV------AFLYKGQIVEWGPTREVFTNPRHELTEKY 244

Length = 250

>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.2 bits (94), Expect = 8e-04
 Identities = 15/38 (39%), Positives = 26/38 (68%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
           + S  + SGG + R+ +ARA+  +P ++L+DEP + LD
Sbjct: 175 DSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALD 212

Length = 285

>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 7/100 (7%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVI----WLDNYLQTWKKTLLVVSH 63
           + SGG   RV +A AL LEP  L+ DEPT  LD+         L    Q +   +L+++H
Sbjct: 125 QLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITH 184

Query: 64  DQSFLNNICTDIIHLDMKKLFYYKGNFTLF---KKMYVQK 100
           D   +  I  ++  +D  ++        +F   K    +K
Sbjct: 185 DLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTRK 224

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score = 40.7 bits (96), Expect = 9e-04
 Identities = 18/50 (36%), Positives = 28/50 (56%)

Query: 232 PNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 281
           P + K +L+ ++F L     + ++GP+G GKST   LL G   P  G +R
Sbjct: 345 PGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVR 394

Length = 580

>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional

 Score = 40.4 bits (95), Expect = 9e-04
 Identities = 18/31 (58%), Positives = 25/31 (80%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
           SGG + R+ +ARA+ +EP +LLLDEPT+ LD
Sbjct: 170 SGGQQQRLVIARAIAIEPEVLLLDEPTSALD 200

Length = 272

>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

 Score = 40.9 bits (96), Expect = 9e-04
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 231 TPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR 285
           TPN G VL+E ++F +   + + + GPNG GKS+   +L GEL P  G     P 
Sbjct: 461 TPN-GDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRIL-GELWPVYGGRLTKPA 513

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 14/63 (22%)

Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
            V  +  V+F    G+V                L+GPNG GK+T L +L G L P+ G  
Sbjct: 17  TVQAVDGVSFTVKPGEV--------------TGLLGPNGAGKTTTLRMLAGLLEPDAGFA 62

Query: 238 LLE 240
            ++
Sbjct: 63  TVD 65

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 15/45 (33%), Positives = 25/45 (55%)

Query: 196 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
           L+ V+  ++      ++GP G GKS  L  + G + P+ GK+LL 
Sbjct: 15  LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLN 59

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 17/31 (54%), Positives = 23/31 (74%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
           SGG + RV++ARA+   P +LLLDE T+ LD
Sbjct: 139 SGGEKQRVAIARAILKNPPILLLDEATSALD 169

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 42/169 (24%), Positives = 58/169 (34%), Gaps = 71/169 (42%)

Query: 233 NKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR----------- 281
           + G+ +L+ V+F +    +VA+VGP+G GKST L LL      + G +            
Sbjct: 11  DPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTL 70

Query: 282 KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN--------------------------- 314
            S R  IG         + P DT       LFN                           
Sbjct: 71  DSLRRAIG---------VVPQDTV------LFNDTIGYNIRYGRPDATDEEVIEAAKAAQ 115

Query: 315 -------LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 356
                   P +     +G  GL           LSGG+K RVA+A   L
Sbjct: 116 IHDKIMRFP-DGYDTIVGERGL----------KLSGGEKQRVAIARAIL 153

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 4/77 (5%)

Query: 7   KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK----TLLVVS 62
           ++ SGG + RV LAR L  EP L L DEPT  LD      + N L+   K    ++++ S
Sbjct: 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226

Query: 63  HDQSFLNNICTDIIHLD 79
           H    + ++    I L+
Sbjct: 227 HWPEVIEDLSDKAIWLE 243

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score = 40.7 bits (96), Expect = 0.001
 Identities = 17/31 (54%), Positives = 24/31 (77%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
           SGG R R+++ARAL  +P +L+LDE T+ LD
Sbjct: 473 SGGERQRLAIARALLKDPPILILDEATSALD 503

Length = 588

>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 170 PNPPYLPPPV-LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG 228
            N   L     L L+ V+  Y G + +L +++  +     VA+VG +G GKST L LL G
Sbjct: 2   MNTARLNQGTPLLLNAVSKRY-GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAG 60

Query: 229 ELTPNKGKVL 238
             TP+ G++L
Sbjct: 61  LETPSAGELL 70

Length = 257

>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 2/56 (3%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSH 63
           SGG R R+++ARAL  +  +L+LDE T+ LD  +   +   L   +K  T LV++H
Sbjct: 482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAH 537

Length = 582

>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 44/163 (26%), Positives = 56/163 (34%), Gaps = 49/163 (30%)

Query: 216 GIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP 275
           G G    LN L   L+   GK+               AL+GPNG GKST L      LTP
Sbjct: 11  GYGTKRILNDL--SLSLPTGKI--------------TALIGPNGCGKSTLLKCFARLLTP 54

Query: 276 NKGEL--------RKSPRL---RIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY------- 317
             G +          S R    R+    QH   HL P+      L+     P+       
Sbjct: 55  QSGTVFLGDKPISMLSSRQLARRLALLPQH---HLTPEGITVRELVAYGRSPWLSLWGRL 111

Query: 318 ---EKSRRQLGMFGLPSYAHTI-----PIRDLSGGQKARVALA 352
              + +R    M                + DLSGGQ+ R  LA
Sbjct: 112 SAEDNARVNQAM----EQTRINHLADRRLTDLSGGQRQRAFLA 150

Length = 255

>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
           SGG R R+ +ARAL  +P +LL DE T+ LD
Sbjct: 590 SGGQRQRLLIARALVRKPRILLFDEATSALD 620

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 3/80 (3%)

Query: 2   QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD-LNAVIWLD--NYLQTWKKTL 58
             K  +E S G + +V    A+  +P LL+LDEP + LD +N  +  D    L    KT+
Sbjct: 122 ANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTV 181

Query: 59  LVVSHDQSFLNNICTDIIHL 78
           ++ +H    +  +C  ++ L
Sbjct: 182 ILSTHQMELVEELCDRVLLL 201

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 191 GGKVL--LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDM 248
           GG  L  L  V+  ++    V L GP+G GKST L  L     P++G++L+      +D+
Sbjct: 20  GGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDL 79

Length = 235

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score = 39.8 bits (94), Expect = 0.001
 Identities = 41/173 (23%), Positives = 67/173 (38%), Gaps = 49/173 (28%)

Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF-GLDME 249
           G + ++  V+  +     V L+GPNG GK+T   ++ G + P+ GK+LL+  +   L M 
Sbjct: 11  GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMH 70

Query: 250 SRVALVGPNGIG-----KSTFLNL-----LKGELTPNKGELRKSPRLRIGKFDQHSGEHL 299
            R  L    GIG      S F  L     +   L     E+R   +    +         
Sbjct: 71  KRARL----GIGYLPQEASIFRKLTVEENILAVL-----EIRGLSKKEREE--------- 112

Query: 300 FPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
                  E L++ F++     R+                  LSGG++ RV +A
Sbjct: 113 -----KLEELLEEFHI--THLRKSKASS-------------LSGGERRRVEIA 145

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 9   FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDL 41
           FSGG + R+ +AR L   P L+ +DEPT  LD+
Sbjct: 152 FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDV 184

Length = 258

>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 19/38 (50%), Positives = 25/38 (65%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
            +S  E SGG   RV++A  L +EP +L+LDEPT  LD
Sbjct: 140 ARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLD 177

Length = 290

>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGK 236
            P+L +  ++  Y GG      V+F L     + +VG +G GKST L  L G L P+ G 
Sbjct: 1   KPLLQVSGLSKSY-GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGT 59

Query: 237 V 237
            
Sbjct: 60  A 60

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253

>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 17/109 (15%)

Query: 189 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTPN---KGKVLLEKVN 243
           + G K  L  V+  +  ++  A +GP+G GKSTFL  L    +        GK+ L+  +
Sbjct: 28  FYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGED 87

Query: 244 F---GLD---MESRVALV--GPNGIGKSTFLNLLKGE----LTPNKGEL 280
                LD   + +RV +V   PN   KS + N+  G     L  +K EL
Sbjct: 88  IYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAEL 136

Length = 267

>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 46/160 (28%), Positives = 67/160 (41%), Gaps = 36/160 (22%)

Query: 199 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE--KVNFGLDMESRVALVG 256
           ++F L     +A++G NG GKST   +L G + P  G++L++   ++FG D   R   + 
Sbjct: 32  LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFG-DYSYRSQRIR 90

Query: 257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLP 316
                 ST LN                PR RI +            D P      L    
Sbjct: 91  MIFQDPSTSLN----------------PRQRISQI----------LDFPLRLNTDLEPEQ 124

Query: 317 YEK----SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
            EK    + RQ+G+  LP +A   P   L+ GQK R+ LA
Sbjct: 125 REKQIIETLRQVGL--LPDHASYYP-HMLAPGQKQRLGLA 161

Length = 267

>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYL----QTWKKTLLVVSH 63
           + SGG + RV+LARA    P +L  DEPT +LD      + + L    +    TL++V+H
Sbjct: 146 QLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTH 205

Query: 64  D 64
           D
Sbjct: 206 D 206

Length = 228

>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 20/50 (40%), Positives = 28/50 (56%)

Query: 191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
           GG + +  VN  +  +  V+L+GPNG GK+T  N L G   P  G +LL 
Sbjct: 16  GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLR 65

Length = 255

>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 20/57 (35%), Positives = 40/57 (70%), Gaps = 2/57 (3%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHD 64
           SGG + R+ +ARA+ +EP +LL+DEP + LD  + + +++ +   K+  T+++V+H+
Sbjct: 150 SGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHN 206

Length = 258

>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional

 Score = 39.5 bits (92), Expect = 0.001
 Identities = 17/33 (51%), Positives = 24/33 (72%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
           + SGG + RV +ARA+  +P +LL DEPT +LD
Sbjct: 137 QLSGGEQQRVGIARAVVNKPAVLLADEPTGNLD 169

Length = 222

>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.6 bits (92), Expect = 0.001
 Identities = 18/62 (29%), Positives = 41/62 (66%), Gaps = 2/62 (3%)

Query: 5   STKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVS 62
           +  E SGG + R+ +AR + ++P ++L+DEP + LD  + + ++  ++  K+  T+++V+
Sbjct: 145 NAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVT 204

Query: 63  HD 64
           H+
Sbjct: 205 HN 206

Length = 252

>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 15/49 (30%), Positives = 28/49 (57%)

Query: 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG 228
           + L +++   P G+ LL ++NF +    R+ + G +G GK++ L  L G
Sbjct: 393 ITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAG 441

Length = 604

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 18/33 (54%), Positives = 21/33 (63%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
           + SGG R RV +A AL   P LL+ DEPT  LD
Sbjct: 156 QLSGGERQRVMIAMALLTRPELLIADEPTTALD 188

Length = 529

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 14/62 (22%)

Query: 234 KGKVLLEKVNFGLDMESR--------------VALVGPNGIGKSTFLNLLKGELTPNKGE 279
           KG V  + V+F  D   +              VA+VGP G GKST +NLL+    P  G 
Sbjct: 332 KGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGR 391

Query: 280 LR 281
           + 
Sbjct: 392 IL 393

Length = 588

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 39.4 bits (93), Expect = 0.002
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 7/80 (8%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD----LNAVIWLDNYLQTWKKTL 58
           ++   E SGG   RV++A AL  +      DEPT++LD    LN    +    +   K +
Sbjct: 207 DRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE--GKYV 264

Query: 59  LVVSHDQSFLNNICTDIIHL 78
           LVV HD + L+ +  D +H+
Sbjct: 265 LVVEHDLAVLDYL-ADNVHI 283

Length = 590

>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 39.8 bits (94), Expect = 0.002
 Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 8/64 (12%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLDL---NAVIWLDNYLQ--TWKKTLLVVSHD 64
           S G   R++LARAL     LLLLDEPT  LD      V+     L   + ++T L+V+H 
Sbjct: 487 SVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVM---QALNAASRRQTTLMVTHQ 543

Query: 65  QSFL 68
              L
Sbjct: 544 LEDL 547

Length = 588

>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 19/49 (38%), Positives = 27/49 (55%)

Query: 196 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF 244
           L+ V+  +     VA+VG +G GKST L+LL G   P  G+VL    + 
Sbjct: 21  LKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSL 69

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221

>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

 Score = 39.1 bits (92), Expect = 0.002
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 5/77 (6%)

Query: 7   KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLN----AVIWLDNYLQTWKKTLLVVS 62
           K +S G   R++ + A  +EP +LLLDE     D       +  L+  ++   KT+++VS
Sbjct: 146 KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEK-NKTIVLVS 204

Query: 63  HDQSFLNNICTDIIHLD 79
           HD   +   C   I L+
Sbjct: 205 HDLGAIKQYCDRAIWLE 221

Length = 249

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 27/85 (31%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAV---------------IWLDNYLQTW 54
           SGG + R+SLARA++ +  + LLD+P     L+AV               + L+N     
Sbjct: 129 SGGQKQRISLARAVYSDADIYLLDDP-----LSAVDAHVGRHIFENCILGLLLNN----- 178

Query: 55  KKTLLVVSHDQSFLNNICTDIIHLD 79
            KT ++V+H    L +    I+ LD
Sbjct: 179 -KTRILVTHQLQLLPH-ADQIVVLD 201

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 18/71 (25%)

Query: 228 GELTPN--KGKVLLEKVNF------------GLDMESR----VALVGPNGIGKSTFLNLL 269
           G L P+  KG V  + V F             +          ALVGP+G GKST + LL
Sbjct: 1   GSLAPDHLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALL 60

Query: 270 KGELTPNKGEL 280
           +    P  G++
Sbjct: 61  ENFYQPQGGQV 71

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 35/121 (28%), Positives = 48/121 (39%), Gaps = 24/121 (19%)

Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELR------KSPRLRIGKFDQHSGEHLFPDDTP 305
           + L+GPNG GK+T L  + G + P KG ++            IG   Q    H F  D P
Sbjct: 9   LGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQ---RHEFAWDFP 65

Query: 306 CEY----------LMKLFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVAL 351
                         +     P    +   R  L   GL   A   P+ +LSGGQ+ RV +
Sbjct: 66  ISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADR-PVGELSGGQRQRVLV 124

Query: 352 A 352
           A
Sbjct: 125 A 125

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223

>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 32/143 (22%), Positives = 58/143 (40%), Gaps = 35/143 (24%)

Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFD-Q 293
              +L+ ++  ++    +AL+G +G GK+T L  + G +         + R+ I   D  
Sbjct: 17  ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAG----LTGRIAIADRDLT 72

Query: 294 HSGEH------------LFPDDTPCEYLMKLFNLPYEKSRRQ------------LGMFGL 329
           H+  H            LFP     + +   F L   ++++             L + GL
Sbjct: 73  HAPPHKRGLALLFQNYALFPHLKVEDNVA--FGL---RAQKMPKADIAERVADALKLVGL 127

Query: 330 PSYAHTIPIRDLSGGQKARVALA 352
              A  +P   LSGG + R+A+A
Sbjct: 128 GDAAAHLP-AQLSGGMQQRIAIA 149

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362

>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 39.1 bits (92), Expect = 0.002
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 8/72 (11%)

Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL---NLLKGELTPN- 233
           P + + D+   Y G K  L+ +N  +      AL+GP+G GKST L   N +  +L P  
Sbjct: 6   PAIEVRDLNLYY-GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRM-NDLIPGA 63

Query: 234 --KGKVLLEKVN 243
             +G+VLL+  N
Sbjct: 64  RVEGEVLLDGKN 75

Length = 253

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 20/49 (40%), Positives = 28/49 (57%)

Query: 232 PNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 280
           PN     L+ V+F ++    VA++G NG GKST   +L G L P  GE+
Sbjct: 18  PNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66

Length = 271

>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 13/28 (46%), Positives = 19/28 (67%)

Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGE 279
           + +VGPNG GK+T + +L G+L PN   
Sbjct: 28  IGIVGPNGTGKTTAVKILAGQLIPNGDN 55

The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177

>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 19/78 (24%), Positives = 43/78 (55%), Gaps = 5/78 (6%)

Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241
             +V++    GK +L+ ++   +  +   +VGP+G GKST + L+   + P +G +L++ 
Sbjct: 6   FKEVSYS-SFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDG 64

Query: 242 VNFG----LDMESRVALV 255
           V+      +D+  ++ +V
Sbjct: 65  VDIKTIDVIDLRRKIGMV 82

Length = 241

>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 17/99 (17%)

Query: 189 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL------------NLLKGE--LTPNK 234
           Y GG   L+ +N  +  +   AL+GP+G GKSTFL            N  +GE  L P+ 
Sbjct: 25  YYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDN 84

Query: 235 GKVLLEKVNFGLDMESRVALV--GPNGIGKSTFLNLLKG 271
             +L  +V+  +++  R+++V   PN   KS F N+  G
Sbjct: 85  VNILSPEVD-PIEVRMRISMVFQKPNPFPKSIFENVAYG 122

Length = 265

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 38.1 bits (88), Expect = 0.002
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKG 278
           + +VGP G GK+T    L  EL P  G
Sbjct: 5   ILIVGPPGSGKTTLARALARELGPPGG 31

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 16/47 (34%), Positives = 25/47 (53%)

Query: 234 KGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 280
             +  +  ++  +   S   L+GPNG GKST L ++ G L P  GE+
Sbjct: 11  GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEI 57

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEP---TNHLDLNAVIWL-DNYLQTWKKTLLVVSH 63
           E SGG   R +LARA+ LEP L++ DEP    + + +  ++ L          T +VVSH
Sbjct: 143 ELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSH 202

Query: 64  D 64
           D
Sbjct: 203 D 203

Length = 269

>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
           + LVGPNG GKST L  + G L P  G +  
Sbjct: 25  LHLVGPNGAGKSTLLARMAG-LLPGSGSIQF 54

Length = 248

>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 6   TKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSH 63
            +  SGG + R++ AR L  +P  + LDE T+ LD      L   L+      T++ V H
Sbjct: 513 DRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGH 572

Query: 64  DQSFLNNICTDIIHLD 79
            +  L N  +  + L 
Sbjct: 573 -RPTLWNFHSRQLELL 587

Length = 604

>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional

 Score = 38.8 bits (90), Expect = 0.002
 Identities = 21/56 (37%), Positives = 34/56 (60%)

Query: 193 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDM 248
           + LL++++F L     + L G NG GK+T L L+ G L P KG++L E+ +   D+
Sbjct: 14  QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDL 69

Length = 200

>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed

 Score = 39.5 bits (93), Expect = 0.002
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 1   MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTL-- 58
             ++   + SGG + RV++ARA+  +P +LLLDE  + LD      + N L+  ++ L  
Sbjct: 137 FAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGI 196

Query: 59  --LVVSHDQ 65
             + V+HDQ
Sbjct: 197 TFVFVTHDQ 205

Length = 375

>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.3 bits (91), Expect = 0.002
 Identities = 20/58 (34%), Positives = 38/58 (65%), Gaps = 2/58 (3%)

Query: 9   FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHD 64
            SGG + R+ +AR L +EP ++L+DEPT+ LD  +   ++  +   K+  T+++V+H+
Sbjct: 151 LSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHN 208

Length = 254

>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241
           + +V+  Y G KV+L+ V+  +      +++GPNG GKST L+++   L  + G++ ++ 
Sbjct: 4   IENVSKSY-GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITID- 61

Query: 242 VNFGLDMES 250
              GL++ S
Sbjct: 62  ---GLELTS 67

Length = 252

>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 41/183 (22%), Positives = 68/183 (37%), Gaps = 42/183 (22%)

Query: 178 PVLGLHDVTFGYPGGKVL-LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGK 236
            ++   +V+F Y       L+ V+F +      ++VG NG GKST   L+ G      G+
Sbjct: 6   SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGE 65

Query: 237 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSG 296
           +                 +  +                 N  +LRK     IG   Q+  
Sbjct: 66  IFYNN-----------QAITDD-----------------NFEKLRK----HIGIVFQNP- 92

Query: 297 EHLFPDDT---PCEYLMKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARV 349
           ++ F          + ++   +PY++  R+    L    +   A   P   LSGGQK RV
Sbjct: 93  DNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEP-NALSGGQKQRV 151

Query: 350 ALA 352
           A+A
Sbjct: 152 AIA 154

Length = 269

>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 4/61 (6%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYL----QTWKKTLLVVSH 63
           E SGG R RV LARAL + P +LL+DE  + LD      + + L       ++T++ +SH
Sbjct: 164 ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISH 223

Query: 64  D 64
           D
Sbjct: 224 D 224

Length = 400

>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 38/149 (25%)

Query: 211 LVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK 270
           ++G +G GKST + LL   + P +G+VL++ V+                I K +      
Sbjct: 59  IMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVD----------------IAKIS------ 96

Query: 271 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQ---- 323
                   ELR+  R +I    Q     L P  T  +   + M+L  +  E+ R +    
Sbjct: 97  ------DAELREVRRKKIAMVFQSFA--LMPHMTVLDNTAFGMELAGINAEERREKALDA 148

Query: 324 LGMFGLPSYAHTIPIRDLSGGQKARVALA 352
           L   GL +YAH+ P  +LSGG + RV LA
Sbjct: 149 LRQVGLENYAHSYP-DELSGGMRQRVGLA 176

Length = 400

>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 18/57 (31%), Positives = 39/57 (68%), Gaps = 2/57 (3%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHD 64
           SGG + R+ +ARA+ ++P ++L+DEP + LD  + + ++  +   K+  T+++V+H+
Sbjct: 153 SGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHN 209

Length = 264

>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 171 NPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL 230
                      L +V+F  PG + LL  ++          L+G NG GKST L +L    
Sbjct: 3   EYTNHSDTTFALRNVSFRVPG-RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ 61

Query: 231 TPNKGKVLL 239
            P++G++LL
Sbjct: 62  PPSEGEILL 70

Length = 265

>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.9 bits (90), Expect = 0.002
 Identities = 20/58 (34%), Positives = 37/58 (63%), Gaps = 2/58 (3%)

Query: 9   FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHD 64
            SGG +  + LAR L + P +LLLDEPT+ LD      ++ ++++   + T+++V+H+
Sbjct: 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHN 221

Length = 276

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 17/114 (14%)

Query: 9   FSGGWRIRVSLARALFLEPTLLLLDEPTNHLD-------LNAVIWLDNYLQTWKKTLLVV 61
            SGG + RVSLARA++    + L D+P + +D          VI  +  L+   KT ++V
Sbjct: 761 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKN--KTRILV 818

Query: 62  SHDQSFLNNICTDIIHLDMK--------KLFYYKGNFTLFKKMYVQKRKELTKE 107
           +H  S+L  +   I+    K        +L    G F  F + Y    ++   E
Sbjct: 819 THGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQGHLE 872

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score = 38.7 bits (91), Expect = 0.003
 Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 23/115 (20%)

Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH 298
           ++ V+F +     + LVG +G GKST   L+ G   P  GE+          F+      
Sbjct: 29  VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEIL---------FEGKDITK 79

Query: 299 LFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALA 352
           L  ++              E+    L   GLP  + +  P  +LSGGQ+ R+ +A
Sbjct: 80  LSKEER------------RERVLELLEKVGLPEEFLYRYP-HELSGGQRQRIGIA 121

Length = 268

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 3/66 (4%)

Query: 2   QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK---TL 58
           + K     SGG + RV++A  L ++P +++LDEPT+ LD      +   L    K   T+
Sbjct: 131 ENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITI 190

Query: 59  LVVSHD 64
           ++ +HD
Sbjct: 191 IISTHD 196

Length = 275

>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein

 Score = 39.1 bits (91), Expect = 0.003
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 6/86 (6%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHDQ 65
             SGG R R+++ARA+     +L+LDE T+ LD+     + N +   +K  T  +++H  
Sbjct: 471 RLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRL 530

Query: 66  SFLNNICTD-IIHLDMKKLFYYKGNF 90
           S + N   D ++ LD  +L   KG+F
Sbjct: 531 STVRN--ADLVLFLDQGRLI-EKGSF 553

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585

>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 20/44 (45%), Positives = 28/44 (63%)

Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 278
           G ++L+ V+  ++    VA+VGP+G GKST L LL G  TP  G
Sbjct: 465 GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESG 508

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686

>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 15/34 (44%), Positives = 23/34 (67%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA 43
           SGG + RV++AR +   P +L+LDE T+ LD + 
Sbjct: 401 SGGEKQRVAIARTILKNPPILILDEATSALDTHT 434

Length = 497

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score = 38.7 bits (90), Expect = 0.003
 Identities = 40/116 (34%), Positives = 52/116 (44%), Gaps = 19/116 (16%)

Query: 253 ALVGPNGIGKSTFLNLLKGELTPNKGEL--------RKSPRLR-IGKFDQHSGEHLFPDD 303
           AL+G +G GKST L +L G   P  G++           P  R I    Q     LFP  
Sbjct: 49  ALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYA--LFPHM 106

Query: 304 T---PCEYLMKLFNLPY-EKSRR---QLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
           T      + +K   LP  E + R    LG+  +  +A   P   LSGGQ+ RVALA
Sbjct: 107 TVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP-HQLSGGQRQRVALA 161

Length = 377

>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 16/40 (40%), Positives = 23/40 (57%)

Query: 242 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 281
           V+F L     + +VG +G GK+T LN L   L P+ GE+ 
Sbjct: 25  VSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVH 64

Length = 258

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 38.7 bits (90), Expect = 0.003
 Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 4/83 (4%)

Query: 1   MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK---- 56
           +++K T   S G + RV++A  L +EP +L+LDEPT  LD   V  +   L   +K    
Sbjct: 134 LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGL 193

Query: 57  TLLVVSHDQSFLNNICTDIIHLD 79
           T+++ +HD   +   C ++  + 
Sbjct: 194 TIIIATHDIDIVPLYCDNVFVMK 216

Length = 283

>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 38.6 bits (89), Expect = 0.003
 Identities = 41/134 (30%), Positives = 58/134 (43%), Gaps = 25/134 (18%)

Query: 244 FGLDME----SRVALVGPNGIGKSTFLNLLKGELTPNKGELR---------------KSP 284
           F +D+E    S  AL+G  G GKST L  L G L P +G++                K  
Sbjct: 23  FDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPV 82

Query: 285 RLRIGKFDQHSGEHLFPDDT--PCEYLMKLFNLPYEKSRR----QLGMFGLPSYAHTIPI 338
           R ++G   Q     LF +       +  + F +P EK+ +    +L M GL         
Sbjct: 83  RKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSP 142

Query: 339 RDLSGGQKARVALA 352
            +LSGGQ  RVA+A
Sbjct: 143 FELSGGQMRRVAIA 156

Length = 288

>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 38.3 bits (89), Expect = 0.003
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 3/86 (3%)

Query: 1   MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK---T 57
           +  KS  E SGG   RV++A  +  EP +L LDEP   LD      +    + ++K   T
Sbjct: 138 LISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHT 197

Query: 58  LLVVSHDQSFLNNICTDIIHLDMKKL 83
           +++V+H+   +     D++ L+  KL
Sbjct: 198 VILVTHNMDDVAEYADDVLVLEHGKL 223

Length = 287

>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 190 PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
           P G VL+E ++F +   + + + GPNG GKS+   +L GEL P  G  L
Sbjct: 462 PNGDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRIL-GELWPVYGGRL 509

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659

>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.5 bits (89), Expect = 0.003
 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 226
           P +   ++T G+  GK +L++V+ G    +  +L+GP G GK+TFL  L
Sbjct: 20  PAMAAVNLTLGF-AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTL 67

Length = 276

>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 15/32 (46%), Positives = 18/32 (56%)

Query: 9   FSGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
            SGG R RVS+A AL    ++L  D  T  LD
Sbjct: 119 ISGGERKRVSIAEALVSRASVLCWDNSTRGLD 150

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202

>gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258

 Score = 37.9 bits (89), Expect = 0.003
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 8/48 (16%)

Query: 191 GGKVLLEKVNFGLDMES--------RVALVGPNGIGKSTFLNLLKGEL 230
           G +VL+     G  +E            L G +G+GKST LN L  EL
Sbjct: 12  GYEVLVVSAKTGEGIEELKPLLKGKTSVLAGQSGVGKSTLLNALLPEL 59

Length = 161

>gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258

 Score = 37.9 bits (89), Expect = 0.003
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 8/56 (14%)

Query: 236 KVLLEKVNFGLDMES--------RVALVGPNGIGKSTFLNLLKGELTPNKGELRKS 283
           +VL+     G  +E            L G +G+GKST LN L  EL    GE+ + 
Sbjct: 14  EVLVVSAKTGEGIEELKPLLKGKTSVLAGQSGVGKSTLLNALLPELDLRTGEISEK 69

Length = 161

>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.6 bits (90), Expect = 0.003
 Identities = 19/57 (33%), Positives = 38/57 (66%), Gaps = 2/57 (3%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHD 64
           SGG + R+ +AR + +EP ++L+DEP + LD  + + ++  +   KK  T+++V+H+
Sbjct: 156 SGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHN 212

Length = 269

>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional

 Score = 38.7 bits (91), Expect = 0.003
 Identities = 17/34 (50%), Positives = 24/34 (70%)

Query: 7   KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
           +E SGG R RV++ RA+  EP + L DEP ++LD
Sbjct: 133 RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166

Length = 356

>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.4 bits (89), Expect = 0.003
 Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 15/108 (13%)

Query: 189 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTP---NKGKVLLEKVN 243
           Y G K  +  ++  ++  +  AL+GP+G GKSTFL  +    +L P   ++G++L E +N
Sbjct: 30  YYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLN 89

Query: 244 F--------GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKS 283
                     L  E  +    PN   KS + N+         GE RKS
Sbjct: 90  ILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHA--LKYAGERRKS 135

Length = 268

>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional

 Score = 39.1 bits (91), Expect = 0.003
 Identities = 18/42 (42%), Positives = 24/42 (57%)

Query: 196 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
           L  ++F +     V ++G NG GKST  NL+ G   PNKG V
Sbjct: 40  LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTV 81

Length = 549

>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.7 bits (90), Expect = 0.003
 Identities = 19/57 (33%), Positives = 38/57 (66%), Gaps = 2/57 (3%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHD 64
           SGG + R+ +AR L ++P ++L+DEP + LD  A   +++ ++   +  T++VV+H+
Sbjct: 202 SGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHN 258

Length = 305

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 38.8 bits (91), Expect = 0.004
 Identities = 17/43 (39%), Positives = 25/43 (58%)

Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 280
           LL+     ++   RV LVG NG GKST + +L GE+  + G +
Sbjct: 18  LLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRI 60

Length = 635

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 16/31 (51%), Positives = 23/31 (74%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
           SGG R R+++ARAL  +  +L+LDE T+ LD
Sbjct: 471 SGGQRQRLAIARALLKDAPILILDEATSALD 501

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system

 Score = 37.9 bits (89), Expect = 0.004
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 7   KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK---TLLVVSH 63
           K +S G + R++ A A  LEP +LL+DE     D          L+   K   T+++VSH
Sbjct: 141 KTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSH 200

Query: 64  DQSFLNNICTDIIHLD 79
           D S +  +C   + L+
Sbjct: 201 DPSSIKRLCDRALVLE 216

The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224

>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.1 bits (88), Expect = 0.004
 Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 15/109 (13%)

Query: 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTPN- 233
             +L   DV   Y G K  ++ VN  +   +  AL+GP+G GK+TFL  +    +LTP  
Sbjct: 2   TLLLSAQDVNIYY-GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGA 60

Query: 234 --KGKVLLEKVNF---GLD---MESRVALV--GPNGIGK-STFLNLLKG 271
              G++LL+  +     +D   M  RV +V   PN     S F N++ G
Sbjct: 61  RVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAG 109

Length = 252

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D

 Score = 37.8 bits (88), Expect = 0.004
 Identities = 38/130 (29%), Positives = 55/130 (42%), Gaps = 20/130 (15%)

Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRL-------RIGKF 291
           L+ VN  +     ++L+G +G GKST LNL+ G   P  G +    +        R+  F
Sbjct: 1   LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60

Query: 292 DQHSGEHLFPDDTPCEYLM-----KLFNLPYEKSRR----QLGMFGLPSYAHTIPIRDLS 342
             +S   L P  T  E +       L +L   + R      + + GL   A       LS
Sbjct: 61  QNYS---LLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADK-RPGQLS 116

Query: 343 GGQKARVALA 352
           GG K RVA+A
Sbjct: 117 GGMKQRVAIA 126

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230

>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 6/79 (7%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD----LNAVIWLDNYLQTWKKTL 58
           +++  + SGG   RV++A AL  +      DEP+++LD    LNA   L   L      +
Sbjct: 134 DRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAAR-LIRELAEDDNYV 192

Query: 59  LVVSHDQSFLNNICTDIIH 77
           LVV HD + L+ + +D IH
Sbjct: 193 LVVEHDLAVLDYL-SDYIH 210

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255

>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 13/122 (10%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA---VIWLDNYLQTWKKTLLVVS--HD 64
           SGG + RV++A  L +EP +++LDE T+ LD      ++ L   L+  K  L V+S  HD
Sbjct: 145 SGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKK-KNNLTVISITHD 203

Query: 65  QSFLN--NICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQG 122
              ++  N+   ++ LD  KL        +F K+ + K   L  +     K   ++K +G
Sbjct: 204 ---IDEANMADQVLVLDDGKLLAQGSPVEIFSKVEMLKEIGL--DIPFVYKLKNKLKEKG 258

Query: 123 MS 124
           +S
Sbjct: 259 IS 260

Length = 282

>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.0 bits (88), Expect = 0.004
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 13/90 (14%)

Query: 195 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTP---NKGKVLLEKVNFG---- 245
           +L+ VN  +   S  AL+GP+G GKSTF+  L    +L P   ++G + L+ V+      
Sbjct: 18  ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77

Query: 246 --LDMESRVALV--GPNGIGKSTFLNLLKG 271
             +++  +V +V   PN   KS F N+  G
Sbjct: 78  DVVELRKKVGMVFQKPNPFPKSIFDNVAYG 107

Length = 250

>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 5/57 (8%)

Query: 189 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTPN---KGKVLLE 240
           Y G    +E VN  ++  S  A +GP+G GKST L  L    E+ P    +G+VLL+
Sbjct: 13  YYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLD 69

Length = 258

>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.0 bits (88), Expect = 0.004
 Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 2/63 (3%)

Query: 4   KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVV 61
            S    SGG + R+ +AR L ++P +LLLDEP + LD  +   ++  +   K+  ++++V
Sbjct: 160 SSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIV 219

Query: 62  SHD 64
           +H+
Sbjct: 220 THN 222

Length = 268

>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional

 Score = 38.1 bits (88), Expect = 0.004
 Identities = 41/157 (26%), Positives = 61/157 (38%), Gaps = 55/157 (35%)

Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG----------ELRKSPRLR- 287
           L  V+  +     VAL+GP+G GKST L  L G +T +K            +++  RL  
Sbjct: 20  LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79

Query: 288 -IGKFDQHSGEHLFPDDTPCEYLMKLFNL-----------------------------PY 317
            I K   ++G           Y+ + FNL                               
Sbjct: 80  DIRKSRANTG-----------YIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTRE 128

Query: 318 EKSR--RQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
           +K R  + L   G+  +AH   +  LSGGQ+ RVA+A
Sbjct: 129 QKQRALQALTRVGMVHFAHQ-RVSTLSGGQQQRVAIA 164

Length = 262

>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional

 Score = 38.1 bits (88), Expect = 0.004
 Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 6/88 (6%)

Query: 2   QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD-LNAVIWLDNYL---QTWKKT 57
           Q  ST   SGG + RV++ARAL  +  ++L DEP   LD  +A I +D      Q    T
Sbjct: 148 QRVST--LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGIT 205

Query: 58  LLVVSHDQSFLNNICTDIIHLDMKKLFY 85
           ++V  H   +    C  I+ L    +FY
Sbjct: 206 VVVTLHQVDYALRYCERIVALRQGHVFY 233

Length = 262

>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 9   FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLD---NYLQTWKKTLLVVSHDQ 65
           FSGG + R  + +   L+  L +LDE  + LD++A+  +    N L T + ++++++H Q
Sbjct: 152 FSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQ 211

Query: 66  SFLNNICTDIIHLDMKKLFYYKGNFTLFKKM 96
             L+ I  D +H+         G+  L K++
Sbjct: 212 RLLDYIKPDYVHVMQNGKIIKTGDAELAKEL 242

Length = 252

>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal

 Score = 37.1 bits (87), Expect = 0.004
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 6/64 (9%)

Query: 104 LTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREY 163
           L +EY+  ++ +       + K+  E +   KA K+ A K   K +  + K+   KPR +
Sbjct: 47  LNEEYKDLKESLEA---ALLDKK--ELKAWEKAEKK-AEKAKAKAEKKKAKKEEPKPRLF 100

Query: 164 IVKF 167
           ++ F
Sbjct: 101 VLDF 104

This domain is found to the N-terminus of bacterial signal peptidases of the S49 family (pfam01343). Length = 154

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	356
COG0488	530	Uup ATPase components of ABC transporters with dup	100.0
KOG0066|consensus	807		100.0
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	100.0
PRK11147	635	ABC transporter ATPase component; Reviewed	100.0
PLN03073	718	ABC transporter F family; Provisional	100.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	100.0
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	100.0
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
KOG0927|consensus	614		100.0
KOG0062|consensus	582		100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
PRK10938	490	putative molybdenum transport ATP-binding protein	100.0
COG4172	534	ABC-type uncharacterized transport system, duplica	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
PRK13409	590	putative ATPase RIL; Provisional	100.0
KOG0055|consensus	1228		100.0
COG3845	501	ABC-type uncharacterized transport systems, ATPase	100.0
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	100.0
PLN03232	1495	ABC transporter C family member; Provisional	100.0
PTZ00243	1560	ABC transporter; Provisional	100.0
PLN03130	1622	ABC transporter C family member; Provisional	100.0
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	100.0
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	100.0
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	100.0
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.98
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.98
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.98
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.98
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.97
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.97
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.97
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.97
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.97
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.97
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.97
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.97
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.97
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.97
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.97
KOG0054|consensus	1381		99.96
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.96
PLN03140	1470	ABC transporter G family member; Provisional	99.96
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.96
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.96
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.95
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.95
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.95
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.95
COG4181	228	Predicted ABC-type transport system involved in ly	99.95
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.95
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.95
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.95
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.95
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.95
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.95
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.95
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.95
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.95
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.95
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.95
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.94
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.94
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.94
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.94
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.94
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.94
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.94
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.94
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.94
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.94
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.94
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.94
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.94
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.94
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.94
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.94
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.94
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.94
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.94
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.94
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.94
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.94
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.94
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.94
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.94
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.94
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.94
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.94
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.94
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.94
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.94
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.94
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.94
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.94
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.94
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.94
PRK10908	222	cell division protein FtsE; Provisional	99.94
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.94
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.94
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.94
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.94
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.94
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.94
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.93
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.93
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.93
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.93
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.93
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.93
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.93
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.93
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.93
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.93
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.93
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.93
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.93
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.93
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.93
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.93
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.93
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.93
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.93
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.93
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.93
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.93
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.93
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.93
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.93
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.93
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.93
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.93
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.93
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.93
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.93
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.93
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.93
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.93
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.93
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.93
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.93
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.93
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.93
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.93
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.93
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.93
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.93
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.93
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.93
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.93
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.92
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.92
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.92
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.92
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.92
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.92
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.92
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.92
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.92
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.92
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.92
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.92
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.92
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.92
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.92
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.92
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.92
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.92
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.92
COG4559	259	ABC-type hemin transport system, ATPase component	99.92
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.92
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.92
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.92
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.92
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.92
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.92
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.92
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.92
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.92
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.92
COG0488	530	Uup ATPase components of ABC transporters with dup	99.92
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.92
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.92
COG1123	539	ATPase components of various ABC-type transport sy	99.92
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.92
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.92
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.92
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.92
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.92
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.92
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.92
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.92
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.92
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.92
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.92
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.92
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.92
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.92
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.92
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.92
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.92
KOG0058|consensus	716		99.91
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.91
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.91
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.91
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.91
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.91
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.91
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.91
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.91
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.91
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.91
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.91
KOG0057|consensus	591		99.91
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.91
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.91
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.91
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.91
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.91
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.91
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.91
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.91
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.91
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.91
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.91
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.91
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.91
COG4988	559	CydD ABC-type transport system involved in cytochr	99.91
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.91
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.91
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.91
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.91
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.91
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.91
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.91
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.91
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.91
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.91
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.91
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.91
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.91
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.91
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.9
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.9
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.9
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.9
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.9
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.9
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.9
PRK10938	490	putative molybdenum transport ATP-binding protein	99.9
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.9
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.9
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.9
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.9
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.9
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.9
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.9
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.9
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.9
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.9
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.9
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.9
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.9
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.9
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.9
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.9
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.9
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.9
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.9
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.9
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.9
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.9
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.9
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.9
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.9
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.9
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.9
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.9
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.9
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.9
PRK11147	635	ABC transporter ATPase component; Reviewed	99.9
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.89
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.89
COG4987	573	CydC ABC-type transport system involved in cytochr	99.89
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.89
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.89
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.89
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.89
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.89
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.89
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.89
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.89
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.89
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.89
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.89
cd03246	173	ABCC_Protease_Secretion This family represents the	99.89
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.89
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.89
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.89
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.89
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.89
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.89
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.89
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.88
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.88
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.88
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.88
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.88
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.88
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.88
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.88
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.88
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.88
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.88
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.88
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.88
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.88
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.88
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.88
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.88
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.88
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.88
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.88
KOG0055|consensus	1228		99.88
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.88
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.88
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.88
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.88
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.88
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.87
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.87
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.87
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.87
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.87
COG4172	534	ABC-type uncharacterized transport system, duplica	99.87
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.87
PLN03073	718	ABC transporter F family; Provisional	99.87
KOG0062|consensus	582		99.87
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.87
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.87
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.87
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.87
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.87
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.86
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.86
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.86
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.86
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.86
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.86
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.86
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.86
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.86
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.86
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.86
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.86
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.86
KOG0063|consensus	592		99.86
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.86
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.86
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.86
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.86
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.86
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.86
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.86
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.86
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.86
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.86
KOG0056|consensus	790		99.86
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.86
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.86
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.86
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.86
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.86
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.86
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.86
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.86
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.86
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.86
PLN03211	659	ABC transporter G-25; Provisional	99.86
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.86
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.86
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.86
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.86
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.86
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.86
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.86
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.86
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.86
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.86
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.85
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.85
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.85
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.85
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.85
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.85
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.85
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.85
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.85
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.85
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.85
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.85
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.85
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.85
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.85
PRK10908	222	cell division protein FtsE; Provisional	99.85
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.85
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.85
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.85
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.85
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.85
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.85
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.85
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.85
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.85
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.85
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.85
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.85
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.85
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.85
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.85
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.85
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.85
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.85
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.85
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.85
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.85
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.85
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.85
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.85
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.85
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.85
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.85
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.85
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.85
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.85
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.85
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.85
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.85
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.85
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.85
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.85
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.85
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.85
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.84
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.84
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.84
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.84
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.84
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.84
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.84
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.84
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.84
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.84
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.84
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.84
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.84
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.84
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.84
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.84
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.84
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.84
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.84
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.84

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=100.00  E-value=4.7e-63  Score=488.10  Aligned_cols=306  Identities=40%  Similarity=0.648  Sum_probs=247.1

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEEeCCe
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMKK   82 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l~~g~   82 (356)
                      ++++.+||||||.||+||++|+.+||+|||||||||||.+++.||+++|++|.+|||+|||||+||+++|++|+++++|+
T Consensus       148 ~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~  227 (530)
T COG0488         148 DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGK  227 (530)
T ss_pred             cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCc
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhhcCCcc
Q psy2684          83 LFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPRE  162 (356)
Q Consensus        83 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (356)
                      +..|.|||+.|.+++....+...+.++++++++++++.+...........+...++.++..++.....    ...+....
T Consensus       228 l~~y~Gny~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~k~a~sr~k~l~k~~~~~~----~~~~~~~~  303 (530)
T COG0488         228 LTPYKGNYSSYLEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLA----EERPVEEG  303 (530)
T ss_pred             eeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhh----hccccccc
Confidence            99999999999999988888888888887888777776543322222121222333333333321100    00001112


Q ss_pred             eeeEEEecCCC-CCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEee
Q psy2684         163 YIVKFRFPNPP-YLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK  241 (356)
Q Consensus       163 ~~~~~~~~~~~-~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g  241 (356)
                      .+..+.++.+. ..++++++++|+++.|++++.+++++||.|.+|+++||+||||+|||||+++|+|...|.+|.|.+. 
T Consensus       304 ~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g-  382 (530)
T COG0488         304 KPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVG-  382 (530)
T ss_pred             ccceeeccCCcccCCCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeC-
Confidence            22334455444 3678899999999999655789999999999999999999999999999999999998888877652 


Q ss_pred             eccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHH
Q psy2684         242 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKS  320 (356)
Q Consensus       242 ~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~  320 (356)
                                                                ...++||++|+.. .++++.|+.+++.... ......+
T Consensus       383 ------------------------------------------~~v~igyf~Q~~~-~l~~~~t~~d~l~~~~~~~~e~~~  419 (530)
T COG0488         383 ------------------------------------------ETVKIGYFDQHRD-ELDPDKTVLEELSEGFPDGDEQEV  419 (530)
T ss_pred             ------------------------------------------CceEEEEEEehhh-hcCccCcHHHHHHhhCccccHHHH
Confidence                                                      2357999999975 4458889999998765 3447889


Q ss_pred             HHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         321 RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       321 ~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +.+|++|+|+.....+|+..||||||.||+||++++
T Consensus       420 r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~  455 (530)
T COG0488         420 RAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLL  455 (530)
T ss_pred             HHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhc
Confidence            999999999988888899999999999999999875

>KOG0066|consensus

Probab=100.00  E-value=5e-59  Score=432.16  Aligned_cols=312  Identities=67%  Similarity=1.119  Sum_probs=276.1

Q ss_pred             CCCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEEeC
Q psy2684           1 MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDM   80 (356)
Q Consensus         1 ~~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l~~   80 (356)
                      |++||+..+|||||.||.|||||...|.+|.|||||||||..++.||.++|+.|..|++|||||..|++.+|+.|++|++
T Consensus       405 MQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~VCtdIIHLD~  484 (807)
T KOG0066|consen  405 MQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLDN  484 (807)
T ss_pred             HhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHHHHHHHhhhhh
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH--HHhcc-ccCCCCchhhh
Q psy2684          81 KKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQA--RKRVQ-KDDDDEPKELL  157 (356)
Q Consensus        81 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~  157 (356)
                      .++.+|.|||..|..+|.+.+.+....|+++++++++|+..+.+.+++.++.+..+.+++.  ..+-+ .+++..+++++
T Consensus       485 qkLhyYrGNY~~FKKmY~Qk~~e~~K~yekQeK~LkelKa~GkS~KqAEkq~Ke~ltrKq~K~~~Knq~dded~gapELL  564 (807)
T KOG0066|consen  485 QKLHYYRGNYTLFKKMYAQKMQEHEKNYEKQEKQLKELKAEGKSAKQAEKQVKEQLTRKQKKGGKKNQNDDEDAGAPELL  564 (807)
T ss_pred             hhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhccccccCccccccCHHHH
Confidence            9999999999999999999999999999999999999999999999888877776666543  22222 34455667788


Q ss_pred             cCCcceeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCce
Q psy2684         158 EKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV  237 (356)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i  237 (356)
                      .+|.++.+.|.||.+....+|++.+++|+|.|++.+++|..++|-|.--.+++||||||.||||||++|.|-+.|     
T Consensus       565 ~RpKEY~VkF~FPep~~L~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P-----  639 (807)
T KOG0066|consen  565 QRPKEYSVKFQFPEPTKLNPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDP-----  639 (807)
T ss_pred             hCchheEEEEecCCCCCCCCCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCC-----
Confidence            889999999999999999999999999999999889999999998888888888766665555555555555554     


Q ss_pred             eEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCH
Q psy2684         238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY  317 (356)
Q Consensus       238 ~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~  317 (356)
                                                            +.|..+.+.+.+||+++|+..+++..+.|..|++...+++++
T Consensus       640 --------------------------------------~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpy  681 (807)
T KOG0066|consen  640 --------------------------------------NDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPY  681 (807)
T ss_pred             --------------------------------------CcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCCh
Confidence                                                  455556666789999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHc
Q psy2684         318 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT  355 (356)
Q Consensus       318 ~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~  355 (356)
                      ++++..|..|||...++.-.+..|||||+.||++|-+.
T Consensus       682 q~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLa  719 (807)
T KOG0066|consen  682 QEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELA  719 (807)
T ss_pred             HHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHh
Confidence            99999999999988777777899999999999999764

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.1e-56  Score=456.49  Aligned_cols=303  Identities=37%  Similarity=0.641  Sum_probs=229.9

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEEeCC
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMK   81 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l~~g   81 (356)
                      .++++.+|||||||||+||++|+.+|+||||||||||||+.++.||.++|+++++|||+||||+++++.+||+|++|++|
T Consensus       143 ~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G  222 (638)
T PRK10636        143 LERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQ  222 (638)
T ss_pred             hcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCC
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhhcCCc
Q psy2684          82 KLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPR  161 (356)
Q Consensus        82 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (356)
                      ++..|.|+|+.|...+........+.+++++++++++..+...........+...++.+...++....   +     ...
T Consensus       223 ~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~a~~~~~a~~r~~~l~~~~~~~---~-----~~~  294 (638)
T PRK10636        223 SLFEYTGNYSSFEVQRATRLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLERMELIA---P-----AHV  294 (638)
T ss_pred             EEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhccc---c-----ccc
Confidence            99999999999998776555556666777776666655432210000000111111111112211100   0     000


Q ss_pred             ceeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEee
Q psy2684         162 EYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK  241 (356)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g  241 (356)
                      .....+.++.+...++++++++|+++.| +++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus       295 ~~~~~~~~~~~~~~~~~~l~~~~l~~~y-~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~  373 (638)
T PRK10636        295 DNPFHFSFRAPESLPNPLLKMEKVSAGY-GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAK  373 (638)
T ss_pred             CCceeEecCCCccCCCceEEEEeeEEEe-CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECC
Confidence            1122344444444567799999999999 567799999999999999999999999999999999999999999998741


Q ss_pred             eccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHH
Q psy2684         242 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKS  320 (356)
Q Consensus       242 ~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~  320 (356)
                                                                 ..++||++|+....+.+..++.+++.... ......+
T Consensus       374 -------------------------------------------~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~  410 (638)
T PRK10636        374 -------------------------------------------GIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKL  410 (638)
T ss_pred             -------------------------------------------CEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHH
Confidence                                                       12589999975334556667777654322 2234567


Q ss_pred             HHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         321 RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       321 ~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +++|+.|+|......+++.+|||||||||+||++++
T Consensus       411 ~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~  446 (638)
T PRK10636        411 RDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVW  446 (638)
T ss_pred             HHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHh
Confidence            889999999754344588999999999999999974

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=100.00  E-value=2.2e-55  Score=449.69  Aligned_cols=301  Identities=28%  Similarity=0.479  Sum_probs=226.8

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEEeCCe
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMKK   82 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l~~g~   82 (356)
                      ++++.+|||||||||+||++|+.+|+||||||||||||+.++.||.++|+++++|||+||||+++++.+||+|++|++|+
T Consensus       151 ~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~  230 (635)
T PRK11147        151 DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGK  230 (635)
T ss_pred             CCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCE
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhhcCCcc
Q psy2684          83 LFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPRE  162 (356)
Q Consensus        83 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (356)
                      ++.|.|+|+.|..++..........++.+.++++++..+......+. ..+. ..+.++..++...... +     ....
T Consensus       231 i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~-~~r~~~~~~~~~~~~~-~-----~~~~  302 (635)
T PRK11147        231 LVSYPGNYDQYLLEKEEALRVEELQNAEFDRKLAQEEVWIRQGIKAR-RTRN-EGRVRALKALRRERSE-R-----REVM  302 (635)
T ss_pred             EEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhH-HHHHHHHHHhhhhhcc-c-----cccC
Confidence            99999999999987766555555555555555544433221100000 0000 1111111111100000 0     0001


Q ss_pred             eeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeee
Q psy2684         163 YIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKV  242 (356)
Q Consensus       163 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~  242 (356)
                      ....+.++.+...++++++++|+++.| +++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+ |.
T Consensus       303 ~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~  380 (635)
T PRK11147        303 GTAKMQVEEASRSGKIVFEMENVNYQI-DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GT  380 (635)
T ss_pred             CceeEEeCCCCCCCCceEEEeeeEEEE-CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CC
Confidence            122344444444567799999999999 5667999999999999999999999999999999999999999999977 21


Q ss_pred             ccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CC--C--H
Q psy2684         243 NFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NL--P--Y  317 (356)
Q Consensus       243 ~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~--~--~  317 (356)
                                                                ..++||++|++ ..+++..|+.+++.... ..  .  .
T Consensus       381 ------------------------------------------~~~i~y~~q~~-~~l~~~~tv~e~l~~~~~~~~~~~~~  417 (635)
T PRK11147        381 ------------------------------------------KLEVAYFDQHR-AELDPEKTVMDNLAEGKQEVMVNGRP  417 (635)
T ss_pred             ------------------------------------------CcEEEEEeCcc-cccCCCCCHHHHHHhhcccccccchH
Confidence                                                      12589999986 35788899999876432 11  1  3


Q ss_pred             HHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         318 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       318 ~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ..++++|+.|++......+++.+|||||||||+||++++
T Consensus       418 ~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~  456 (635)
T PRK11147        418 RHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFL  456 (635)
T ss_pred             HHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHh
Confidence            457888999999754444588999999999999999974

>PLN03073 ABC transporter F family; Provisional

Probab=100.00  E-value=7.6e-54  Score=439.74  Aligned_cols=304  Identities=44%  Similarity=0.778  Sum_probs=222.6

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEEeCC
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMK   81 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l~~g   81 (356)
                      .++++.+||||||||++||++|+.+|++|||||||||||+.++.||.++|+++++|||+||||++++..+||+|++|++|
T Consensus       338 ~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~~~d~i~~l~~g  417 (718)
T PLN03073        338 QVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDILHLHGQ  417 (718)
T ss_pred             HhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhhcCCc
Q psy2684          82 KLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPR  161 (356)
Q Consensus        82 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (356)
                      ++..|.|+|+.|...+......+.++++.++++.+.++..........+.......+.+...++....  .      .+.
T Consensus       418 ~i~~~~g~~~~~~~~~~~~~~~~~~~~e~~~k~~~~l~~~i~~~~~~a~~~~~~~s~~k~l~~~~~~~--~------~~~  489 (718)
T PLN03073        418 KLVTYKGDYDTFERTREEQLKNQQKAFESNERSRSHMQAFIDKFRYNAKRASLVQSRIKALDRLGHVD--A------VVN  489 (718)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhcchHHHHHhhhh--c------ccc
Confidence            99999999999988777666777777887777776665432111110000000000000011110000  0      000


Q ss_pred             ceeeEEEecCC-CCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEe
Q psy2684         162 EYIVKFRFPNP-PYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE  240 (356)
Q Consensus       162 ~~~~~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~  240 (356)
                      .....+.++.+ ...++++++++|+++.|+++..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++
T Consensus       490 ~~~~~~~~~~~~~~~~~~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~  569 (718)
T PLN03073        490 DPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRS  569 (718)
T ss_pred             CCCceeecCCCccCCCCceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEEC
Confidence            01111222221 12345789999999999544569999999999999999999999999999999999999999999763


Q ss_pred             eeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHH-hcCCCHHH
Q psy2684         241 KVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK-LFNLPYEK  319 (356)
Q Consensus       241 g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~-~~~~~~~~  319 (356)
                      +                                           +.++||++|++...+....+....+.. ........
T Consensus       570 ~-------------------------------------------~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~  606 (718)
T PLN03073        570 A-------------------------------------------KVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQK  606 (718)
T ss_pred             C-------------------------------------------ceeEEEEeccccccCCcchhHHHHHHHhcCCCCHHH
Confidence            1                                           136899999853222111122222211 12345667


Q ss_pred             HHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         320 SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       320 ~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ++++|+.+|+......+++.+|||||||||+||++++
T Consensus       607 i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~  643 (718)
T PLN03073        607 LRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF  643 (718)
T ss_pred             HHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHh
Confidence            8899999999754444578999999999999999974

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.1e-53  Score=424.37  Aligned_cols=303  Identities=29%  Similarity=0.496  Sum_probs=219.7

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEEeCCe
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMKK   82 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l~~g~   82 (356)
                      ++++.+||||||||++||++|+.+|+||||||||++||+.++.||.++|+++++|||+||||++++.++||+|++|++|+
T Consensus       150 ~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~  229 (530)
T PRK15064        150 YGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGE  229 (530)
T ss_pred             cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCE
Confidence            46789999999999999999999999999999999999999999999999889999999999999999999999999999


Q ss_pred             EeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhhcCCcc
Q psy2684          83 LFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPRE  162 (356)
Q Consensus        83 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (356)
                      ++.|.|+|+.|.+++........++++.++++++++...................+.+........   ....  .....
T Consensus       230 i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~  304 (530)
T PRK15064        230 LRVYPGNYDEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKAKQATSRAKQIDKIKLE---EVKP--SSRQN  304 (530)
T ss_pred             EEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhhcccc---ccCC--ccccC
Confidence            987899999998766654444555555555555444322110000000000000000001110000   0000  00000


Q ss_pred             eeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeee
Q psy2684         163 YIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKV  242 (356)
Q Consensus       163 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~  242 (356)
                      .  ...++.....++++++++|+++.| +++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++ 
T Consensus       305 ~--~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-  380 (530)
T PRK15064        305 P--FIRFEQDKKLHRNALEVENLTKGF-DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE-  380 (530)
T ss_pred             c--eeeCCCCCCCCCceEEEEeeEEee-CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-
Confidence            0  011222222245689999999999 556799999999999999999999999999999999999999999998753 


Q ss_pred             ccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc--CCCHHHH
Q psy2684         243 NFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF--NLPYEKS  320 (356)
Q Consensus       243 ~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~--~~~~~~~  320 (356)
                                                                +.++||++|++...+++..|+.+++....  ......+
T Consensus       381 ------------------------------------------~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~  418 (530)
T PRK15064        381 ------------------------------------------NANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAV  418 (530)
T ss_pred             ------------------------------------------ceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHH
Confidence                                                      13689999986434566788988765321  1234567


Q ss_pred             HHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         321 RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       321 ~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +++|+.+|+.....++++.+|||||||||+||++++
T Consensus       419 ~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~  454 (530)
T PRK15064        419 RGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMM  454 (530)
T ss_pred             HHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHh
Confidence            889999999532334578999999999999999974

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=6.5e-52  Score=418.62  Aligned_cols=299  Identities=27%  Similarity=0.469  Sum_probs=218.4

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEEeCCe
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMKK   82 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l~~g~   82 (356)
                      ++++.+|||||||||+||++|+.+|++||||||||+||+.++.||.++|+++++|||+||||++++..+||+|++|++|+
T Consensus       158 ~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~~g~  237 (556)
T PRK11819        158 DAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGR  237 (556)
T ss_pred             cCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEeCCE
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhhcCCcc
Q psy2684          83 LFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPRE  162 (356)
Q Consensus        83 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (356)
                      ++.|.|+|+.|.+.+........+.++..+++++++........... .. ....+.+...+....   .+.   ..+..
T Consensus       238 i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~---~~~---~~~~~  309 (556)
T PRK11819        238 GIPWEGNYSSWLEQKAKRLAQEEKQEAARQKALKRELEWVRQSPKAR-QA-KSKARLARYEELLSE---EYQ---KRNET  309 (556)
T ss_pred             EEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HH-HHHHHHHHHHHhhcc---ccc---ccCCC
Confidence            98899999999876654444444444444444433332211100000 00 000000000111000   000   00000


Q ss_pred             eeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeee
Q psy2684         163 YIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKV  242 (356)
Q Consensus       163 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~  242 (356)
                        ..+.++......+++++++|+++.| +++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++ 
T Consensus       310 --~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-  385 (556)
T PRK11819        310 --NEIFIPPGPRLGDKVIEAENLSKSF-GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-  385 (556)
T ss_pred             --ceeecCCCCCCCCeEEEEEeEEEEE-CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-
Confidence              1111222222245789999999999 556799999999999999999999999999999999999999999998731 


Q ss_pred             ccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CC--CH
Q psy2684         243 NFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NL--PY  317 (356)
Q Consensus       243 ~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~--~~  317 (356)
                                                                ..++||++|++ ..+++..|+.+++....   ..  ..
T Consensus       386 ------------------------------------------~~~i~~v~q~~-~~~~~~~tv~e~l~~~~~~~~~~~~~  422 (556)
T PRK11819        386 ------------------------------------------TVKLAYVDQSR-DALDPNKTVWEEISGGLDIIKVGNRE  422 (556)
T ss_pred             ------------------------------------------ceEEEEEeCch-hhcCCCCCHHHHHHhhcccccccccH
Confidence                                                      01589999986 24677889999875422   11  23


Q ss_pred             HHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         318 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       318 ~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ..++.+|+.+++.....++++.+|||||||||+||++++
T Consensus       423 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~  461 (556)
T PRK11819        423 IPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLK  461 (556)
T ss_pred             HHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHh
Confidence            346678999999753334578999999999999999974

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=100.00  E-value=1e-51  Score=416.96  Aligned_cols=299  Identities=29%  Similarity=0.476  Sum_probs=217.9

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEEeCCe
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMKK   82 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l~~g~   82 (356)
                      ++++.+||||||||++||++|+.+|++||||||||+||+.++.||.++|+++++|||+||||++++..+||+|++|++|+
T Consensus       156 ~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g~  235 (552)
T TIGR03719       156 DADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGR  235 (552)
T ss_pred             cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECCE
Confidence            67899999999999999999999999999999999999999999999999998999999999999999999999999999


Q ss_pred             EeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhhcCCcc
Q psy2684          83 LFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPRE  162 (356)
Q Consensus        83 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (356)
                      ++.|.|+|+.|.+...........++++.++++.++........... ... ...+.....+... .  .+.    .+ .
T Consensus       236 i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~-~--~~~----~~-~  305 (552)
T TIGR03719       236 GIPWEGNYSSWLEQKEKRLEQEEKEESARQKALKRELEWVRSSPKAR-QAK-SKARLARYEELLS-Q--EFQ----KR-N  305 (552)
T ss_pred             EEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHH-HHHHHHHHHhhhh-h--ccc----cc-C
Confidence            98899999999876654444444444444444433322211000000 000 0000000000000 0  000    00 0


Q ss_pred             eeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeee
Q psy2684         163 YIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKV  242 (356)
Q Consensus       163 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~  242 (356)
                      ....+.++......+++++++|+++.| +++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++ 
T Consensus       306 ~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-  383 (552)
T TIGR03719       306 ETAEIYIPPGPRLGDKVIEAENLSKGF-GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-  383 (552)
T ss_pred             CCceeecCCCCCCCCeEEEEeeEEEEE-CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-
Confidence            001112222222346789999999999 556799999999999999999999999999999999999999999998731 


Q ss_pred             ccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCC--H
Q psy2684         243 NFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLP--Y  317 (356)
Q Consensus       243 ~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~--~  317 (356)
                                                                ..++||++|++. .+++..|+.+++....   ...  .
T Consensus       384 ------------------------------------------~~~i~~v~q~~~-~~~~~~tv~e~l~~~~~~~~~~~~~  420 (552)
T TIGR03719       384 ------------------------------------------TVKLAYVDQSRD-ALDPNKTVWEEISGGLDIIQLGKRE  420 (552)
T ss_pred             ------------------------------------------ceEEEEEeCCcc-ccCCCCcHHHHHHhhccccccCcch
Confidence                                                      015899999852 4677889999876432   111  2


Q ss_pred             HHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         318 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       318 ~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ..++++++.+++.....++++.+|||||||||+||++++
T Consensus       421 ~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~  459 (552)
T TIGR03719       421 VPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLK  459 (552)
T ss_pred             HHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHh
Confidence            345678999999754334578999999999999999974

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=8.6e-53  Score=408.46  Aligned_cols=275  Identities=25%  Similarity=0.372  Sum_probs=205.1

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEecChhHHhhhcCEEEEE
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQ----TWKKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~----~~~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      ++++++|||||||||.||+||+++|++||+||||+.||+..+..+.++|+    +.++++|+||||+..+.++||||+||
T Consensus       149 ~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm  228 (539)
T COG1123         149 DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVM  228 (539)
T ss_pred             ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEE
Confidence            46899999999999999999999999999999999999999877766665    45789999999999999999999999


Q ss_pred             eCCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhhc
Q psy2684          79 DMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLE  158 (356)
Q Consensus        79 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (356)
                      ++|++++.+..-+-|.+....+...+..             .                     .......          
T Consensus       229 ~~G~iVE~G~~~~i~~~p~hpYT~~Ll~-------------a---------------------~p~~~~~----------  264 (539)
T COG1123         229 YKGEIVETGPTEEILSNPQHPYTRGLLA-------------A---------------------VPRLGDE----------  264 (539)
T ss_pred             ECCEEEEecCHHHHHhccCCcccHHHHh-------------h---------------------CCCcccc----------
Confidence            9999998644333332211111000000             0                     0000000          


Q ss_pred             CCcceeeEEEecCCCCCCCCcEEEecceeeeCC------C----ccccccceeeecCCCeEEEEcCCCCCcchhhhhhcc
Q psy2684         159 KPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPG------G----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~------~----~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~g  228 (356)
                      ...    .. .........|+++++|+++.|..      .    ..++++|||+|.+||++||||+||||||||.++|+|
T Consensus       265 ~~~----~~-~~~~~~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~g  339 (539)
T COG1123         265 KII----RL-PRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAG  339 (539)
T ss_pred             ccc----cc-ccccccccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhC
Confidence            000    00 00001115789999999999952      1    358999999999999999999999999999999999


Q ss_pred             ccccCCCceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHH
Q psy2684         229 ELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEY  308 (356)
Q Consensus       229 l~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~  308 (356)
                      +++|++|.|.++|.++...                             .+. ....++++-++||+|...++|.+|+.+.
T Consensus       340 L~~P~~G~i~~~g~~~~~~-----------------------------~~~-~~~~r~~~QmvFQdp~~SLnPr~tV~~~  389 (539)
T COG1123         340 LLPPSSGSIIFDGQDLDLT-----------------------------GGE-LRRLRRRIQMVFQDPYSSLNPRMTVGDI  389 (539)
T ss_pred             CCCCCCceEEEeCcccccc-----------------------------cch-hhhhhhheEEEEeCcccccCccccHHHH
Confidence            9999999999998763211                             011 1112457899999999999999999998


Q ss_pred             HHHhcC----CC----HHHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         309 LMKLFN----LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       309 ~~~~~~----~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +.....    ..    .+.+.++|+.+|++.....++|++||||||||+||||+|.
T Consensus       390 i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa  445 (539)
T COG1123         390 LAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALA  445 (539)
T ss_pred             HHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHh
Confidence            865432    11    1346678999999975444567999999999999999973

>KOG0927|consensus

Probab=100.00  E-value=2.7e-52  Score=396.87  Aligned_cols=306  Identities=45%  Similarity=0.787  Sum_probs=245.8

Q ss_pred             CCCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCc-EEEEEecChhHHhhhcCEEEEEe
Q psy2684           1 MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK-TLLVVSHDQSFLNNICTDIIHLD   79 (356)
Q Consensus         1 ~~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~-tvi~vsHd~~~l~~~~~~i~~l~   79 (356)
                      ++++++..|||||++|++||++|+.+|++|||||||||||++++.||+++|.++.. ++|++||+.+|++.+|++|++++
T Consensus       214 m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~  293 (614)
T KOG0927|consen  214 MQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLD  293 (614)
T ss_pred             HHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheec
Confidence            46788999999999999999999999999999999999999999999999999987 89999999999999999999999


Q ss_pred             CCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH-HHHHHHHHHHHHHHHHhccccCCCCchhhhc
Q psy2684          80 MKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEK-AERQHSHKALKEQARKRVQKDDDDEPKELLE  158 (356)
Q Consensus        80 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (356)
                      .++++.|.|||++|...+....+.+.++|+++++.+..++....+.-. ..+..+++.+..+...++...      .+.+
T Consensus       294 ~kkl~~y~Gnydqy~~tr~E~~~~q~K~~~kqqk~i~~~K~~ia~~g~g~a~~~rka~s~~K~~~km~~~------gL~e  367 (614)
T KOG0927|consen  294 NKKLIYYEGNYDQYVKTRSELEENQMKAYEKQQKQIAHMKDLIARFGHGSAKLGRKAQSKEKTLDKMEAD------GLTE  367 (614)
T ss_pred             ccceeeecCCHHHHhhHHHHHhHHHHHHHHHHHhHHHHhhHHHHhhcccchhhhHHHhhhhhhHHHHhhc------cccc
Confidence            999999999999999988888888888888888887776653221111 011111122222222222211      1112


Q ss_pred             CC-cceeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCce
Q psy2684         159 KP-REYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV  237 (356)
Q Consensus       159 ~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i  237 (356)
                      ++ .+....+.++.....+.|++.+.|++|.|+++..++++++|-|..++++++|||||+||||||+++.|.+.|..|.|
T Consensus       368 k~~~~k~l~~~f~~vg~~p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~v  447 (614)
T KOG0927|consen  368 KVVGEKVLSFRFPEVGKIPPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMV  447 (614)
T ss_pred             cccCCceEEEEcccccCCCCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccc
Confidence            22 23345566666556677899999999999655579999999999999999999999999999999999999888876


Q ss_pred             eEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC--C
Q psy2684         238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN--L  315 (356)
Q Consensus       238 ~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~--~  315 (356)
                      .-.                                           ...+++++-|+..+++.-+.+..++++..+.  .
T Consensus       448 s~~-------------------------------------------~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~  484 (614)
T KOG0927|consen  448 SRH-------------------------------------------SHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEK  484 (614)
T ss_pred             ccc-------------------------------------------ccccchhhhhhhHhhcCcchhHHHHHHHhccccc
Confidence            332                                           2345778889888888888899999887654  4


Q ss_pred             CHHHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHc
Q psy2684         316 PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT  355 (356)
Q Consensus       316 ~~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~  355 (356)
                      ..++++.+|++|||.......|+++||+|||.||++|+++
T Consensus       485 ~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~  524 (614)
T KOG0927|consen  485 ELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLA  524 (614)
T ss_pred             hHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHH
Confidence            5577889999999998888889999999999999999985

>KOG0062|consensus

Probab=100.00  E-value=2.8e-51  Score=387.96  Aligned_cols=304  Identities=44%  Similarity=0.675  Sum_probs=232.0

Q ss_pred             CCCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEEeC
Q psy2684           1 MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDM   80 (356)
Q Consensus         1 ~~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l~~   80 (356)
                      |+.+|+.+||||||.|++|||||..+||+|||||||||||..++.||+++|..|+.|+|+||||+.||+.+|+.|+++++
T Consensus       191 mq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~  270 (582)
T KOG0062|consen  191 MQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLEN  270 (582)
T ss_pred             HHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhh
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhhcCC
Q psy2684          81 KKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKP  160 (356)
Q Consensus        81 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (356)
                      -++-.|.|||+.|.+.+..+...++++|+.+......++.......-..++.....++-+   .+.+-    + ...+..
T Consensus       271 ~kL~~YkGN~~~Fvk~k~E~~~n~qrefe~q~~~R~h~q~fid~FrYna~ra~svqSRIk---~L~kl----~-~lk~~~  342 (582)
T KOG0062|consen  271 LKLDYYKGNYSQFVKTKPEAKKNQQREFEVQMKYRAHLQVFIDKFRYNAARASSVQSRIK---MLGKL----P-ALKSTL  342 (582)
T ss_pred             hhhhhhcCcHHHHHHhhHHhhhhhhhhcchHHHHHHHHHHHHHHhccCcccchhHHHHHH---HhccC----C-CCCccc
Confidence            999999999999999888888888888887766655555432111000000000011111   11110    0 000001


Q ss_pred             cceeeEEEecC-CCCCCCCcEEEecceeeeCCCc-cccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCcee
Q psy2684         161 REYIVKFRFPN-PPYLPPPVLGLHDVTFGYPGGK-VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL  238 (356)
Q Consensus       161 ~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~-~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~  238 (356)
                      .+....+.+|. ......|.+++.+|+|.|..+. .++.++++++..-++++++|+||+||||+++++.+-..|..|.+ 
T Consensus       343 ~~~~~~~~fP~~~e~~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~-  421 (582)
T KOG0062|consen  343 IEVLIGFLFPTEGEVLSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIV-  421 (582)
T ss_pred             eecccceecCCCCCcCCCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCccccee-
Confidence            12223455655 2345678999999999997666 68899999999999999997777777777777777666655543 


Q ss_pred             EeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-cCCCH
Q psy2684         239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-FNLPY  317 (356)
Q Consensus       239 ~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-~~~~~  317 (356)
                                                                ...++.+++|++|+.-.++.-..+..++++.. .+.+.
T Consensus       422 ------------------------------------------~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~  459 (582)
T KOG0062|consen  422 ------------------------------------------GRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTE  459 (582)
T ss_pred             ------------------------------------------eecccceecchhHhhhhHHHHHhHHHHHHHHhCCCCCH
Confidence                                                      34457899999998765554444556666554 46788


Q ss_pred             HHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHc
Q psy2684         318 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT  355 (356)
Q Consensus       318 ~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~  355 (356)
                      ++++..|+.||++.....+++..||||||-||++|.++
T Consensus       460 ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~  497 (582)
T KOG0062|consen  460 EEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACT  497 (582)
T ss_pred             HHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHh
Confidence            99999999999999888788899999999999999985

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=2.5e-48  Score=390.15  Aligned_cols=262  Identities=25%  Similarity=0.379  Sum_probs=197.3

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||||||+||++|+.+|++|||||||++||+.++.++.++|++    ++.|||+||||++++.++||+|++
T Consensus       162 ~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~  241 (520)
T TIGR03269       162 ITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIW  241 (520)
T ss_pred             hhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEE
Confidence            3678999999999999999999999999999999999999999998776654    367999999999999999999999


Q ss_pred             EeCCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhh
Q psy2684          78 LDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELL  157 (356)
Q Consensus        78 l~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (356)
                      |++|+++. .|+++.+.....                 ..+.                        ...           
T Consensus       242 l~~G~i~~-~g~~~~~~~~~~-----------------~~~~------------------------~~~-----------  268 (520)
T TIGR03269       242 LENGEIKE-EGTPDEVVAVFM-----------------EGVS------------------------EVE-----------  268 (520)
T ss_pred             EeCCEEee-ecCHHHHHHHHH-----------------hhch------------------------hhc-----------
Confidence            99999975 577766532100                 0000                        000           


Q ss_pred             cCCcceeeEEEecCCCCCCCCcEEEecceeeeCC----CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccC
Q psy2684         158 EKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPG----GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN  233 (356)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~  233 (356)
                       ++          .+...+.++++++|+++.|++    +..+|+++||+|.+|++++|+||||||||||+++|+|+++|+
T Consensus       269 -~~----------~~~~~~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~  337 (520)
T TIGR03269       269 -KE----------CEVEVGEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPT  337 (520)
T ss_pred             -cc----------cccCCCCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence             00          000112458999999999942    246999999999999999999999999999999999999999


Q ss_pred             CCceeEe-eecc-ccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHH
Q psy2684         234 KGKVLLE-KVNF-GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK  311 (356)
Q Consensus       234 ~G~i~~~-g~~~-~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~  311 (356)
                      +|+|.++ |.+. .+.        .                ..+  .. ....+.++||++|++  .+++..|+.+++..
T Consensus       338 ~G~i~~~~g~~~~~~~--------~----------------~~~--~~-~~~~~~~i~~v~q~~--~l~~~~tv~e~l~~  388 (520)
T TIGR03269       338 SGEVNVRVGDEWVDMT--------K----------------PGP--DG-RGRAKRYIGILHQEY--DLYPHRTVLDNLTE  388 (520)
T ss_pred             CeEEEEecCCcccccc--------c----------------cch--hh-HHHHhhhEEEEccCc--ccCCCCcHHHHHHH
Confidence            9999996 5321 000        0                000  00 000124699999986  37788999998854


Q ss_pred             hc--CCC----HHHHHHHHhhcCCCCc----cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         312 LF--NLP----YEKSRRQLGMFGLPSY----AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       312 ~~--~~~----~~~~~~~L~~~~l~~~----~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ..  ..+    ...+.++++.+++...    ..++++.+|||||||||+||++++
T Consensus       389 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~  443 (520)
T TIGR03269       389 AIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLI  443 (520)
T ss_pred             HHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHh
Confidence            21  122    2346678999999752    234578999999999999999974

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=7.7e-49  Score=394.52  Aligned_cols=268  Identities=22%  Similarity=0.308  Sum_probs=198.3

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEEE
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      ++++.+|||||||||+||++|+.+|++|||||||++||+.++.++.++|++    .+.|||+||||++++..+||+|++|
T Consensus       151 ~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l  230 (529)
T PRK15134        151 TDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVM  230 (529)
T ss_pred             hhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEE
Confidence            678999999999999999999999999999999999999999999888876    3689999999999999999999999


Q ss_pred             eCCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhhc
Q psy2684          79 DMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLE  158 (356)
Q Consensus        79 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (356)
                      ++|+++.+ |..+++.....   ...          .+.+.                  ..      ...  .       
T Consensus       231 ~~G~i~~~-g~~~~~~~~~~---~~~----------~~~~~------------------~~------~~~--~-------  263 (529)
T PRK15134        231 QNGRCVEQ-NRAATLFSAPT---HPY----------TQKLL------------------NS------EPS--G-------  263 (529)
T ss_pred             ECCEEEEe-CCHHHHhhCCC---CHH----------HHHHH------------------Hh------Ccc--c-------
Confidence            99999865 44433211000   000          00000                  00      000  0       


Q ss_pred             CCcceeeEEEecCCCCCCCCcEEEecceeeeCC----------CccccccceeeecCCCeEEEEcCCCCCcchhhhhhcc
Q psy2684         159 KPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPG----------GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~g  228 (356)
                      .+        ... ...++++++++|+++.|+.          ++.+|+++||+|++|++++|+||||||||||+++|+|
T Consensus       264 ~~--------~~~-~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~G  334 (529)
T PRK15134        264 DP--------VPL-PEPASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLR  334 (529)
T ss_pred             cc--------ccc-CCCCCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            00        000 0113568999999999942          3569999999999999999999999999999999999


Q ss_pred             ccccCCCceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHH
Q psy2684         229 ELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEY  308 (356)
Q Consensus       229 l~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~  308 (356)
                      +++ ++|+|+++|.++....                          +  ... ...+.++||++|++...+++..|+.++
T Consensus       335 l~~-~~G~i~~~g~~i~~~~--------------------------~--~~~-~~~~~~i~~v~q~~~~~l~~~~tv~e~  384 (529)
T PRK15134        335 LIN-SQGEIWFDGQPLHNLN--------------------------R--RQL-LPVRHRIQVVFQDPNSSLNPRLNVLQI  384 (529)
T ss_pred             cCC-CCcEEEECCEEccccc--------------------------h--hhH-HHhhhceEEEEeCchhhcCCcccHHHH
Confidence            994 8999999987652100                          0  000 001346999999974357788899998


Q ss_pred             HHHh---cC--CC----HHHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         309 LMKL---FN--LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       309 ~~~~---~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +...   ..  .+    ...+.++|+.+|+.....++++.+|||||||||+||++++
T Consensus       385 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~  441 (529)
T PRK15134        385 IEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALI  441 (529)
T ss_pred             HHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHh
Confidence            7542   11  22    2346788999999742234578999999999999999974

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3e-49  Score=403.46  Aligned_cols=296  Identities=21%  Similarity=0.232  Sum_probs=203.3

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||||||+||+||+.+|+||||||||++||+.++..+.+++++    .+.|||+||||++++.++||||++
T Consensus       162 ~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~v  241 (623)
T PRK10261        162 LSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLV  241 (623)
T ss_pred             HhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEE
Confidence            3688999999999999999999999999999999999999998877766654    367999999999999999999999


Q ss_pred             EeCCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhh
Q psy2684          78 LDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELL  157 (356)
Q Consensus        78 l~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (356)
                      |++|+++. .|+++.+.....   .....          .+.........        .. .   ....  ........ 
T Consensus       242 l~~G~i~~-~g~~~~~~~~~~---~~~~~----------~l~~~~~~~~~--------~~-~---~~~~--~~~~~~~~-  292 (623)
T PRK10261        242 MYQGEAVE-TGSVEQIFHAPQ---HPYTR----------ALLAAVPQLGA--------MK-G---LDYP--RRFPLISL-  292 (623)
T ss_pred             eeCCeecc-cCCHHHhhcCCC---Chhhh----------hhhhccCcccc--------cc-c---ccCC--cccccccc-
Confidence            99999985 677766532100   00000          00000000000        00 0   0000  00000000 


Q ss_pred             cCCcceeeEEEecCCCCCCCCcEEEecceeeeCC----------CccccccceeeecCCCeEEEEcCCCCCcchhhhhhc
Q psy2684         158 EKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPG----------GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK  227 (356)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~  227 (356)
                      ..+.... ....+.....++++++++|+++.|+.          ...+|+++||+|.+||+++|+|+||||||||+++|+
T Consensus       293 ~~~~~~~-~~~~~~~~~~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~  371 (623)
T PRK10261        293 EHPAKQE-PPIEQDTVVDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALL  371 (623)
T ss_pred             ccccccC-cccccccccCCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence            0000000 00000011123578999999999941          146899999999999999999999999999999999


Q ss_pred             cccccCCCceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHH
Q psy2684         228 GELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCE  307 (356)
Q Consensus       228 gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e  307 (356)
                      |+++|++|+|.++|.++....                            .... ...+.+|+|+||++...+++.+|+.+
T Consensus       372 Gl~~p~~G~I~~~g~~i~~~~----------------------------~~~~-~~~~~~i~~v~Q~~~~~l~~~~tv~~  422 (623)
T PRK10261        372 RLVESQGGEIIFNGQRIDTLS----------------------------PGKL-QALRRDIQFIFQDPYASLDPRQTVGD  422 (623)
T ss_pred             cCCCCCCcEEEECCEECCcCC----------------------------HHHH-HHhcCCeEEEecCchhhcCCCCCHHH
Confidence            999999999999987653100                            0000 01134699999997546888899999


Q ss_pred             HHHHh---cCC-CH----HHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         308 YLMKL---FNL-PY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       308 ~~~~~---~~~-~~----~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ++...   .+. ..    ..+.++|+.+|+.....++++++|||||||||+||++|+
T Consensus       423 ~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~  479 (623)
T PRK10261        423 SIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALA  479 (623)
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHh
Confidence            87542   122 11    346788999999633334577999999999999999974

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.7e-48  Score=387.34  Aligned_cols=266  Identities=17%  Similarity=0.246  Sum_probs=197.9

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++++.+||||||||++||++|+.+|++|||||||++||+.++.++.++|+++   +.|||+||||++++..+||++++|
T Consensus       139 ~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l  218 (510)
T PRK09700        139 LDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVM  218 (510)
T ss_pred             cccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            47889999999999999999999999999999999999999999998887764   579999999999999999999999


Q ss_pred             eCCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhhc
Q psy2684          79 DMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLE  158 (356)
Q Consensus        79 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (356)
                      ++|+++ +.|+++.+...      +..          ..+.  +..                    ...   ..+ ..  
T Consensus       219 ~~G~i~-~~g~~~~~~~~------~~~----------~~~~--~~~--------------------~~~---~~~-~~--  253 (510)
T PRK09700        219 KDGSSV-CSGMVSDVSND------DIV----------RLMV--GRE--------------------LQN---RFN-AM--  253 (510)
T ss_pred             ECCEEe-eecchhhCCHH------HHH----------HHhc--CCC--------------------ccc---ccc-cc--
Confidence            999996 45766554210      000          0000  000                    000   000 00  


Q ss_pred             CCcceeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCcee
Q psy2684         159 KPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL  238 (356)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~  238 (356)
                      .+         .......+++++++|+++.| +  .+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.
T Consensus       254 ~~---------~~~~~~~~~~l~~~~l~~~~-~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~  321 (510)
T PRK09700        254 KE---------NVSNLAHETVFEVRNVTSRD-R--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIR  321 (510)
T ss_pred             cc---------ccccCCCCcEEEEeCccccC-C--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEE
Confidence            00         00001134689999999876 3  389999999999999999999999999999999999999999999


Q ss_pred             EeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcC-CCCCCCCCHHHHHHHhc----
Q psy2684         239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSG-EHLFPDDTPCEYLMKLF----  313 (356)
Q Consensus       239 ~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~-~~l~~~~t~~e~~~~~~----  313 (356)
                      ++|.++...                               ......+.++||++|++. ..+++..|+.+++....    
T Consensus       322 ~~g~~~~~~-------------------------------~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~  370 (510)
T PRK09700        322 LNGKDISPR-------------------------------SPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKD  370 (510)
T ss_pred             ECCEECCCC-------------------------------CHHHHHHCCcEEccCccccCCCcCCCcHHHHhcccccccc
Confidence            998664200                               000001236899999852 35788899999875321    


Q ss_pred             -------CC-C----HHHHHHHHhhcCCC-CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         314 -------NL-P----YEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       314 -------~~-~----~~~~~~~L~~~~l~-~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                             +. .    ...+.++|+.+++. +.. ++++.+|||||||||+||++++
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~LSgGq~qrv~lAral~  425 (510)
T PRK09700        371 GGYKGAMGLFHEVDEQRTAENQRELLALKCHSV-NQNITELSGGNQQKVLISKWLC  425 (510)
T ss_pred             ccccccccccChHHHHHHHHHHHHhcCCCCCCc-cCccccCChHHHHHHHHHHHHh
Confidence                   11 1    12356889999996 444 4578999999999999999974

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=100.00  E-value=4.8e-48  Score=385.57  Aligned_cols=273  Identities=21%  Similarity=0.273  Sum_probs=195.2

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++++.+||||||||++||++|+.+|++|||||||++||+.++.++.++|+++   +.|||+||||++++.++||+|++|
T Consensus       129 ~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l  208 (490)
T PRK10938        129 LDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVL  208 (490)
T ss_pred             hhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEE
Confidence            47889999999999999999999999999999999999999999999988876   579999999999999999999999


Q ss_pred             eCCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhhc
Q psy2684          79 DMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLE  158 (356)
Q Consensus        79 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (356)
                      ++|+++.. |+.+.+....      .          ...+..                  .   .....  ...+..  .
T Consensus       209 ~~G~i~~~-~~~~~~~~~~------~----------~~~~~~------------------~---~~~~~--~~~~~~--~  246 (490)
T PRK10938        209 ADCTLAET-GEREEILQQA------L----------VAQLAH------------------S---EQLEG--VQLPEP--D  246 (490)
T ss_pred             ECCEEEEe-CCHHHHhcch------h----------hhhhhh------------------h---hccCc--cccCcc--c
Confidence            99999754 6654432100      0          000000                  0   00000  000000  0


Q ss_pred             CCcceeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc-CCCce
Q psy2684         159 KPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-NKGKV  237 (356)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p-~~G~i  237 (356)
                      .+.       .+......+++++++|+++.| +++.+|+++||+|.+||+++|+||||||||||+++|+|+.+| ++|+|
T Consensus       247 ~~~-------~~~~~~~~~~~l~~~~l~~~~-~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i  318 (490)
T PRK10938        247 EPS-------ARHALPANEPRIVLNNGVVSY-NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDL  318 (490)
T ss_pred             ccc-------cccccCCCCceEEEeceEEEE-CCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeE
Confidence            000       000011235689999999999 456799999999999999999999999999999999998876 69999


Q ss_pred             eEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-c---
Q psy2684         238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-F---  313 (356)
Q Consensus       238 ~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-~---  313 (356)
                      +++|.++..              +.                 .....+.++||++|++........++.+++... .   
T Consensus       319 ~~~g~~~~~--------------~~-----------------~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~  367 (490)
T PRK10938        319 TLFGRRRGS--------------GE-----------------TIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSI  367 (490)
T ss_pred             EEecccCCC--------------CC-----------------CHHHHHhhceEECHHHHhhcccCCcHHHHHHhcccccc
Confidence            999764310              00                 000113469999998632122234565554321 1   


Q ss_pred             C----CC---HHHHHHHHhhcCCCC-ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         314 N----LP---YEKSRRQLGMFGLPS-YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       314 ~----~~---~~~~~~~L~~~~l~~-~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .    ..   .+.+.++++.+++.. ..+ +++.+|||||||||+||++++
T Consensus       368 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~LSgGq~qrv~la~al~  417 (490)
T PRK10938        368 GIYQAVSDRQQKLAQQWLDILGIDKRTAD-APFHSLSWGQQRLALIVRALV  417 (490)
T ss_pred             ccccCCCHHHHHHHHHHHHHcCCchhhcc-CchhhCCHHHHHHHHHHHHHh
Confidence            1    11   234678899999986 444 578999999999999999974

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=100.00  E-value=6.4e-48  Score=355.74  Aligned_cols=268  Identities=24%  Similarity=0.298  Sum_probs=206.4

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQ----TWKKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~----~~~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .+.++++|||||||||+||.||+.+|++||.||||+.||..-...+.++|+    ++++++++||||+..+..+||||+|
T Consensus       151 l~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~V  230 (534)
T COG4172         151 LDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYV  230 (534)
T ss_pred             hhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEE
Confidence            367899999999999999999999999999999999999988766666665    4689999999999999999999999


Q ss_pred             EeCCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhh
Q psy2684          78 LDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELL  157 (356)
Q Consensus        78 l~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (356)
                      |..|++++.+..-..|..+...+...+                                        ++    ..|..  
T Consensus       231 M~~G~ivE~~~t~~lF~~PqHpYTr~L----------------------------------------l~----aeP~g--  264 (534)
T COG4172         231 MQHGEIVETGTTETLFAAPQHPYTRKL----------------------------------------LA----AEPSG--  264 (534)
T ss_pred             EeccEEeecCcHHHHhhCCCChHHHHH----------------------------------------Hh----cCCCC--
Confidence            999999975333233322111110000                                        00    00000  


Q ss_pred             cCCcceeeEEEecCCCCCCCCcEEEecceeeeCCC----------ccccccceeeecCCCeEEEEcCCCCCcchhhhhhc
Q psy2684         158 EKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGG----------KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK  227 (356)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~  227 (356)
                           .     .++.+...+++++++++.+.|+-.          ..+++++||++.+|+.+||||.||||||||-.+|.
T Consensus       265 -----~-----~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~all  334 (534)
T COG4172         265 -----D-----PPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALL  334 (534)
T ss_pred             -----C-----CCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHH
Confidence                 0     011223346789999999988521          24899999999999999999999999999999999


Q ss_pred             cccccCCCceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHH
Q psy2684         228 GELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCE  307 (356)
Q Consensus       228 gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e  307 (356)
                      +++++. |+|.|+|.++.-.          +                   ..-....+.++..|||+|...+.|.+|+.+
T Consensus       335 rL~~s~-G~I~F~G~~i~~~----------~-------------------~~~mrplR~~mQvVFQDPygSLsPRmtV~q  384 (534)
T COG4172         335 RLIPSQ-GEIRFDGQDIDGL----------S-------------------RKEMRPLRRRMQVVFQDPYGSLSPRMTVGQ  384 (534)
T ss_pred             hhcCcC-ceEEECCcccccc----------C-------------------hhhhhhhhhhceEEEeCCCCCCCcccCHHH
Confidence            999988 9999999887511          0                   011122356799999999989999999998


Q ss_pred             HHHHhc-----CCC----HHHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHc
Q psy2684         308 YLMKLF-----NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT  355 (356)
Q Consensus       308 ~~~~~~-----~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~  355 (356)
                      .+....     ..+    .+.+.+.|..+|+++....++|+++|||||||+||||++
T Consensus       385 II~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAl  441 (534)
T COG4172         385 IIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARAL  441 (534)
T ss_pred             HhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHH
Confidence            876432     122    245778899999998777778899999999999999996

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.1e-48  Score=385.59  Aligned_cols=266  Identities=18%  Similarity=0.251  Sum_probs=197.2

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++++.+||||||||++||++|+.+|++|||||||++||+.++.++.++|.++   +.|||+||||++++..+||+|++|
T Consensus       137 ~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l  216 (506)
T PRK13549        137 PATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVI  216 (506)
T ss_pred             cccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEE
Confidence            46789999999999999999999999999999999999999999998888765   579999999999999999999999


Q ss_pred             eCCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhhc
Q psy2684          79 DMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLE  158 (356)
Q Consensus        79 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (356)
                      ++|+++.+ |+.+.+...      ..          .+.+.  +.                            ...... 
T Consensus       217 ~~G~i~~~-~~~~~~~~~------~~----------~~~~~--~~----------------------------~~~~~~-  248 (506)
T PRK13549        217 RDGRHIGT-RPAAGMTED------DI----------ITMMV--GR----------------------------ELTALY-  248 (506)
T ss_pred             ECCEEeee-cccccCCHH------HH----------HHHhh--Cc----------------------------Cccccc-
Confidence            99998754 443322110      00          00000  00                            000000 


Q ss_pred             CCcceeeEEEecCCCCCCCCcEEEecceeeeC--CCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc-cCCC
Q psy2684         159 KPREYIVKFRFPNPPYLPPPVLGLHDVTFGYP--GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-PNKG  235 (356)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~-p~~G  235 (356)
                       +.        . ....+.++++++|+++.|+  ++..+++++||+|++||+++|+||||||||||+++|+|+++ |++|
T Consensus       249 -~~--------~-~~~~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G  318 (506)
T PRK13549        249 -PR--------E-PHTIGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEG  318 (506)
T ss_pred             -cc--------c-ccCCCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCc
Confidence             00        0 0012346899999999994  23569999999999999999999999999999999999999 5999


Q ss_pred             ceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcC-CCCCCCCCHHHHHHHh--
Q psy2684         236 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSG-EHLFPDDTPCEYLMKL--  312 (356)
Q Consensus       236 ~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~-~~l~~~~t~~e~~~~~--  312 (356)
                      +|.++|.++...                              . .....+..++|++|++. ..+++..|+.+++...  
T Consensus       319 ~i~~~g~~~~~~------------------------------~-~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~  367 (506)
T PRK13549        319 EIFIDGKPVKIR------------------------------N-PQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAAL  367 (506)
T ss_pred             EEEECCEECCCC------------------------------C-HHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhh
Confidence            999998765210                              0 00001235899999863 2467788999887431  


Q ss_pred             --c-C---CC----HHHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         313 --F-N---LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       313 --~-~---~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                        . .   ..    ...+.++++.+++.....++++.+|||||||||+||++++
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~  421 (506)
T PRK13549        368 DRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLL  421 (506)
T ss_pred             hhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHh
Confidence              1 1   11    1346788999999632334578999999999999999974

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.2e-47  Score=383.67  Aligned_cols=265  Identities=18%  Similarity=0.280  Sum_probs=195.7

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEEe
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHLD   79 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l~   79 (356)
                      ++++.+||||||||++||++|+.+|++|||||||++||+.++.++.++|+++   +.|||+||||++++..+||+|++|+
T Consensus       136 ~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~  215 (500)
T TIGR02633       136 TRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIR  215 (500)
T ss_pred             cCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEe
Confidence            4678999999999999999999999999999999999999999998887754   6799999999999999999999999


Q ss_pred             CCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhhcC
Q psy2684          80 MKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEK  159 (356)
Q Consensus        80 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (356)
                      +|+++.+ |..+.+...      ..          ...+.  +                        ...   +..   .
T Consensus       216 ~G~i~~~-~~~~~~~~~------~~----------~~~~~--~------------------------~~~---~~~---~  246 (500)
T TIGR02633       216 DGQHVAT-KDMSTMSED------DI----------ITMMV--G------------------------REI---TSL---Y  246 (500)
T ss_pred             CCeEeee-cCcccCCHH------HH----------HHHHh--C------------------------ccc---ccc---c
Confidence            9998764 332221100      00          00000  0                        000   000   0


Q ss_pred             CcceeeEEEecCCCCCCCCcEEEecceeeeCC--CccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc-CCCc
Q psy2684         160 PREYIVKFRFPNPPYLPPPVLGLHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-NKGK  236 (356)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p-~~G~  236 (356)
                      +         ..+...++++++++|+++.|++  +..+++++||+|.+||+++|+||||||||||+++|+|+++| ++|+
T Consensus       247 ~---------~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~  317 (500)
T TIGR02633       247 P---------HEPHEIGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGN  317 (500)
T ss_pred             c---------ccccCCCCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeE
Confidence            0         0000113458999999999832  34699999999999999999999999999999999999996 8999


Q ss_pred             eeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcC-CCCCCCCCHHHHHHHh---
Q psy2684         237 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSG-EHLFPDDTPCEYLMKL---  312 (356)
Q Consensus       237 i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~-~~l~~~~t~~e~~~~~---  312 (356)
                      |.++|.++...                               ......+.++||++|++. ..+++..|+.+++...   
T Consensus       318 i~~~g~~~~~~-------------------------------~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~  366 (500)
T TIGR02633       318 VFINGKPVDIR-------------------------------NPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLK  366 (500)
T ss_pred             EEECCEECCCC-------------------------------CHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhh
Confidence            99998765200                               000011246899999863 2467888998876431   


Q ss_pred             -c----CCC----HHHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         313 -F----NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       313 -~----~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                       .    ...    ...+.++|+++++.....++++.+|||||||||+||++++
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~  419 (500)
T TIGR02633       367 SFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLL  419 (500)
T ss_pred             hhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHh
Confidence             1    111    1346788999999753334578999999999999999974

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=1.2e-46  Score=376.85  Aligned_cols=270  Identities=17%  Similarity=0.201  Sum_probs=196.0

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++++.+||||||||++||++|+.+|++|||||||++||+.++.++.++|+++   +.|||+||||++++..+||+|++|
T Consensus       134 ~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l  213 (510)
T PRK15439        134 LDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVM  213 (510)
T ss_pred             ccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            46889999999999999999999999999999999999999999998888764   679999999999999999999999


Q ss_pred             eCCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhhc
Q psy2684          79 DMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLE  158 (356)
Q Consensus        79 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (356)
                      ++|+++. .|+++.+....      ..+          .+...... .                 ....      ..   
T Consensus       214 ~~G~i~~-~g~~~~~~~~~------~~~----------~~~~~~~~-~-----------------~~~~------~~---  249 (510)
T PRK15439        214 RDGTIAL-SGKTADLSTDD------IIQ----------AITPAARE-K-----------------SLSA------SQ---  249 (510)
T ss_pred             ECCEEEE-ecChHHcCHHH------HHH----------HHhCcccc-c-----------------cccc------cc---
Confidence            9999975 68887664311      000          00000000 0                 0000      00   


Q ss_pred             CCcceeeEEEe-cCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCce
Q psy2684         159 KPREYIVKFRF-PNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV  237 (356)
Q Consensus       159 ~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i  237 (356)
                      .   ....+.. ......++++++++|+++      .+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|
T Consensus       250 ~---~~~~~~~~~~~~~~~~~~l~~~~l~~------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i  320 (510)
T PRK15439        250 K---LWLELPGNRRQQAAGAPVLTVEDLTG------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRI  320 (510)
T ss_pred             c---ccccccccccccCCCCceEEEeCCCC------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEE
Confidence            0   0000000 001112456899999983      15999999999999999999999999999999999999999999


Q ss_pred             eEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcC-CCCCCCCCHHHHHHHh----
Q psy2684         238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSG-EHLFPDDTPCEYLMKL----  312 (356)
Q Consensus       238 ~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~-~~l~~~~t~~e~~~~~----  312 (356)
                      .++|.++...               +           +  .   ...+.+++|++|++. ..+++..|+.+++...    
T Consensus       321 ~~~g~~i~~~---------------~-----------~--~---~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~  369 (510)
T PRK15439        321 MLNGKEINAL---------------S-----------T--A---QRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNR  369 (510)
T ss_pred             EECCEECCCC---------------C-----------H--H---HHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhh
Confidence            9998765210               0           0  0   001236899999852 2467778888876321    


Q ss_pred             cC---CC---HHHHHHHHhhcCCC-CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         313 FN---LP---YEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       313 ~~---~~---~~~~~~~L~~~~l~-~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ..   ..   .+.+.++|+.+|+. ... ++++.+|||||||||+||++++
T Consensus       370 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~LSgG~kqrl~la~al~  419 (510)
T PRK15439        370 RGFWIKPARENAVLERYRRALNIKFNHA-EQAARTLSGGNQQKVLIAKCLE  419 (510)
T ss_pred             hccccChHHHHHHHHHHHHHcCCCCCCc-cCccccCCcHHHHHHHHHHHHh
Confidence            01   11   12466889999997 444 4578999999999999999974

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=1.7e-46  Score=375.12  Aligned_cols=259  Identities=20%  Similarity=0.260  Sum_probs=192.1

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++++.+||||||||++||++|+.+|++|||||||++||+.++.++.++++++   +.|||+||||++++..+||+|++|
T Consensus       135 ~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l  214 (501)
T PRK10762        135 SDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVF  214 (501)
T ss_pred             ccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            46789999999999999999999999999999999999999999988777654   679999999999999999999999


Q ss_pred             eCCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhhc
Q psy2684          79 DMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLE  158 (356)
Q Consensus        79 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (356)
                      ++|+++.. |..+.....      ..          .....  +                        ......      
T Consensus       215 ~~G~i~~~-~~~~~~~~~------~~----------~~~~~--~------------------------~~~~~~------  245 (501)
T PRK10762        215 RDGQFIAE-REVADLTED------SL----------IEMMV--G------------------------RKLEDQ------  245 (501)
T ss_pred             eCCEEEEe-cCcCcCCHH------HH----------HHHhc--C------------------------CCcccc------
Confidence            99999753 433221100      00          00000  0                        000000      


Q ss_pred             CCcceeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCcee
Q psy2684         159 KPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL  238 (356)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~  238 (356)
                      .+.       .+  ....+++++++|+++      .+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.
T Consensus       246 ~~~-------~~--~~~~~~~l~~~~l~~------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~  310 (501)
T PRK10762        246 YPR-------LD--KAPGEVRLKVDNLSG------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVT  310 (501)
T ss_pred             ccc-------cc--cCCCCcEEEEeCccc------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEE
Confidence            000       00  011346899999984      269999999999999999999999999999999999999999999


Q ss_pred             EeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcC-CCCCCCCCHHHHHHHh----c
Q psy2684         239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSG-EHLFPDDTPCEYLMKL----F  313 (356)
Q Consensus       239 ~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~-~~l~~~~t~~e~~~~~----~  313 (356)
                      ++|.++...                               ......+.++||++|++. ..+++..|+.+++...    .
T Consensus       311 ~~g~~i~~~-------------------------------~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~  359 (501)
T PRK10762        311 LDGHEVVTR-------------------------------SPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYF  359 (501)
T ss_pred             ECCEECCCC-------------------------------CHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhh
Confidence            998765210                               000001235999999863 2467788999887431    1


Q ss_pred             ----C-CC----HHHHHHHHhhcCCC-CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         314 ----N-LP----YEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       314 ----~-~~----~~~~~~~L~~~~l~-~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                          + ..    .+.++++|+.+++. ... ++++.+|||||||||+||++++
T Consensus       360 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~LSgGekqrv~lA~al~  411 (501)
T PRK10762        360 SRAGGSLKHADEQQAVSDFIRLFNIKTPSM-EQAIGLLSGGNQQKVAIARGLM  411 (501)
T ss_pred             cccccccCHHHHHHHHHHHHHhcCCCCCCc-cCchhhCCHHHHHHHHHHHHHh
Confidence                1 11    23467889999995 444 4578999999999999999974

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.7e-46  Score=373.77  Aligned_cols=262  Identities=21%  Similarity=0.280  Sum_probs=191.6

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++++.+||||||||++||++|+.+|+||||||||++||+.++.++.++|+++   +.|||+||||++++..+||+|++|
T Consensus       134 ~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l  213 (501)
T PRK11288        134 PDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVF  213 (501)
T ss_pred             cCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            36788999999999999999999999999999999999999999999888764   579999999999999999999999


Q ss_pred             eCCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhhc
Q psy2684          79 DMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLE  158 (356)
Q Consensus        79 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (356)
                      ++|+++.....+....      .+..          ...+..                          ...    ..   
T Consensus       214 ~~G~i~~~~~~~~~~~------~~~~----------~~~~~~--------------------------~~~----~~---  244 (501)
T PRK11288        214 KDGRYVATFDDMAQVD------RDQL----------VQAMVG--------------------------REI----GD---  244 (501)
T ss_pred             ECCEEEeecCccccCC------HHHH----------HHHhcC--------------------------CCc----cc---
Confidence            9999874221111000      0000          000000                          000    00   


Q ss_pred             CCcceeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCcee
Q psy2684         159 KPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL  238 (356)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~  238 (356)
                       ..      .. .+...++++++++|+++.     .+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.
T Consensus       245 -~~------~~-~~~~~~~~~l~~~~~~~~-----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~  311 (501)
T PRK11288        245 -IY------GY-RPRPLGEVRLRLDGLKGP-----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVY  311 (501)
T ss_pred             -cc------cc-cccCCCCcEEEEeccccC-----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEE
Confidence             00      00 000113457899999842     389999999999999999999999999999999999999999999


Q ss_pred             EeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcC-CCCCCCCCHHHHHHHhc----
Q psy2684         239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSG-EHLFPDDTPCEYLMKLF----  313 (356)
Q Consensus       239 ~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~-~~l~~~~t~~e~~~~~~----  313 (356)
                      ++|.++...              +                 .....+..++|++|++. ..+++..|+.+++....    
T Consensus       312 ~~g~~~~~~--------------~-----------------~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~  360 (501)
T PRK11288        312 LDGKPIDIR--------------S-----------------PRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHH  360 (501)
T ss_pred             ECCEECCCC--------------C-----------------HHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhh
Confidence            988664210              0                 00001246899999863 34677889988864311    


Q ss_pred             ---C--CC----HHHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         314 ---N--LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       314 ---~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                         +  ..    .+.++++|+.+++.....++++.+|||||||||+||++++
T Consensus       361 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~  412 (501)
T PRK11288        361 LRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLS  412 (501)
T ss_pred             cccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHc
Confidence               1  01    1346789999999533334578999999999999999974

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-45  Score=367.69  Aligned_cols=263  Identities=15%  Similarity=0.198  Sum_probs=191.2

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++++.+||||||||++||++|+.+|++|||||||++||+.++.++.++++++   +.|||+||||.+++..+||+|++|
T Consensus       128 ~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l  207 (491)
T PRK10982        128 PRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITIL  207 (491)
T ss_pred             ccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence            36789999999999999999999999999999999999999999998888764   679999999999999999999999


Q ss_pred             eCCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhhc
Q psy2684          79 DMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLE  158 (356)
Q Consensus        79 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (356)
                      ++|+++.. |+.+....      ...          ...+.  +                        ...   ...   
T Consensus       208 ~~G~i~~~-~~~~~~~~------~~~----------~~~~~--~------------------------~~~---~~~---  238 (491)
T PRK10982        208 RDGQWIAT-QPLAGLTM------DKI----------IAMMV--G------------------------RSL---TQR---  238 (491)
T ss_pred             ECCEEEee-cChhhCCH------HHH----------HHHHh--C------------------------CCc---ccc---
Confidence            99999753 43322110      000          00000  0                        000   000   


Q ss_pred             CCcceeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCcee
Q psy2684         159 KPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL  238 (356)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~  238 (356)
                      .+.        +. ....+++++++|+++.+   +.+|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.
T Consensus       239 ~~~--------~~-~~~~~~~i~~~~l~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~  306 (491)
T PRK10982        239 FPD--------KE-NKPGEVILEVRNLTSLR---QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTIT  306 (491)
T ss_pred             ccc--------cc-CCCCCcEEEEeCccccc---CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEE
Confidence            000        00 01134589999999875   3589999999999999999999999999999999999999999999


Q ss_pred             EeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcC-CCCCCCCCHHHH-----HHHh
Q psy2684         239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSG-EHLFPDDTPCEY-----LMKL  312 (356)
Q Consensus       239 ~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~-~~l~~~~t~~e~-----~~~~  312 (356)
                      ++|.++...               +                .....+..++|++|++. ..++++.++.++     +...
T Consensus       307 ~~g~~i~~~---------------~----------------~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~  355 (491)
T PRK10982        307 LHGKKINNH---------------N----------------ANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNY  355 (491)
T ss_pred             ECCEECCCC---------------C----------------HHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhh
Confidence            998765210               0                00001235899999853 235666665543     2111


Q ss_pred             ---cCC-C----HHHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         313 ---FNL-P----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       313 ---~~~-~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                         .+. .    ...++++++.+++.....++++.+|||||||||+||++++
T Consensus       356 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~  407 (491)
T PRK10982        356 KNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLL  407 (491)
T ss_pred             cccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHh
Confidence               111 1    2346778999999643335588999999999999999874

>PRK13409 putative ATPase RIL; Provisional

Probab=100.00  E-value=4.1e-45  Score=368.91  Aligned_cols=258  Identities=29%  Similarity=0.360  Sum_probs=189.2

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEe
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLD   79 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~   79 (356)
                      .++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++++++  +.|||+||||++++..+||+|++|+
T Consensus       206 ~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~  285 (590)
T PRK13409        206 LDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAY  285 (590)
T ss_pred             hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence            47899999999999999999999999999999999999999999999988877  7899999999999999999999997


Q ss_pred             CCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhhcC
Q psy2684          80 MKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEK  159 (356)
Q Consensus        80 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (356)
                      ++.     |.|..+...... +. ...++          .. +....            . .. +...    .       
T Consensus       286 ~~~-----g~~g~~~~~~~~-~~-~i~~~----------~~-~~~~~------------e-~~-~~~~----~-------  322 (590)
T PRK13409        286 GEP-----GAYGVVSKPKGV-RV-GINEY----------LK-GYLPE------------E-NM-RIRP----E-------  322 (590)
T ss_pred             CCc-----cccceecchhHH-HH-hHHHH----------HH-hcchh------------h-hh-hccc----c-------
Confidence            641     223222211110 00 00000          00 00000            0 00 0000    0       


Q ss_pred             CcceeeEEEecCC--CCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCce
Q psy2684         160 PREYIVKFRFPNP--PYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV  237 (356)
Q Consensus       160 ~~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i  237 (356)
                          ...+....+  ...+.++++++|+++.| ++. .|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|
T Consensus       323 ----~~~~~~~~~~~~~~~~~~l~~~~ls~~~-~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I  396 (590)
T PRK13409        323 ----PIEFEERPPRDESERETLVEYPDLTKKL-GDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEV  396 (590)
T ss_pred             ----CcceecCCCccccCCceEEEEcceEEEE-CCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence                000011000  01245689999999999 443 5899999999999999999999999999999999999999998


Q ss_pred             eEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CC-
Q psy2684         238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NL-  315 (356)
Q Consensus       238 ~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~-  315 (356)
                      .++                                             .+++|++|++.  ++...|+.+++.... .. 
T Consensus       397 ~~~---------------------------------------------~~i~y~~Q~~~--~~~~~tv~e~l~~~~~~~~  429 (590)
T PRK13409        397 DPE---------------------------------------------LKISYKPQYIK--PDYDGTVEDLLRSITDDLG  429 (590)
T ss_pred             EEe---------------------------------------------eeEEEeccccc--CCCCCcHHHHHHHHhhhcC
Confidence            763                                             14899999864  567789999875421 11 


Q ss_pred             CHHHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         316 PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       316 ~~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ....+.++|+.+++....+ +++.+|||||||||+||++++
T Consensus       430 ~~~~~~~~L~~l~l~~~~~-~~~~~LSGGe~QRvaiAraL~  469 (590)
T PRK13409        430 SSYYKSEIIKPLQLERLLD-KNVKDLSGGELQRVAIAACLS  469 (590)
T ss_pred             hHHHHHHHHHHCCCHHHHh-CCcccCCHHHHHHHHHHHHHh
Confidence            2334678999999986554 578999999999999999974

>KOG0055|consensus

Probab=100.00  E-value=4e-36  Score=311.70  Aligned_cols=142  Identities=32%  Similarity=0.408  Sum_probs=111.2

Q ss_pred             EEEecceeeeCC--CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         180 LGLHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       180 l~~~~l~~~~~~--~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      ++++||+|.||.  +.++|+|+||+|++|+.+||||||||||||.+.+|.++|.|++|.|.++|.++..-          
T Consensus       988 I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~l---------- 1057 (1228)
T KOG0055|consen  988 IEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDL---------- 1057 (1228)
T ss_pred             EEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccC----------
Confidence            899999999973  34699999999999999999999999999999999999999999999999887410          


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHhhcCC-------
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGL-------  329 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-~~~~~~~~~~~L~~~~l-------  329 (356)
                                           . ....|.++|.|.|+|.  +| +.|+.||+... ...+.+++.+.++..+.       
T Consensus      1058 ---------------------n-l~~LR~~i~lVsQEP~--LF-~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sL 1112 (1228)
T KOG0055|consen 1058 ---------------------N-LKWLRKQIGLVSQEPV--LF-NGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSL 1112 (1228)
T ss_pred             ---------------------C-HHHHHHhcceeccCch--hh-cccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcC
Confidence                                 0 1122568999999984  55 56899998765 23577777766655443       


Q ss_pred             CCcccc---CCCCCCChHHHHHHHHHHHcC
Q psy2684         330 PSYAHT---IPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       330 ~~~~~~---~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +.-.+.   .+-.+||||||||+||||+++
T Consensus      1113 P~GyDT~vGerG~QLSGGQKQRIAIARAil 1142 (1228)
T KOG0055|consen 1113 PQGYDTRVGERGVQLSGGQKQRIAIARAIL 1142 (1228)
T ss_pred             cCcccCccCcccCcCCchHHHHHHHHHHHH
Confidence            221111   123589999999999999975

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=100.00  E-value=1.3e-34  Score=274.77  Aligned_cols=267  Identities=23%  Similarity=0.317  Sum_probs=199.1

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++.+.+||-||||||-|-++|..+|++|||||||+.|-|..++.|+..++++   |.|||+|||.++++.++|||+.||
T Consensus       134 p~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVL  213 (501)
T COG3845         134 PDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVL  213 (501)
T ss_pred             ccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEE
Confidence            36789999999999999999999999999999999999999999999888765   689999999999999999999999


Q ss_pred             eCCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhhc
Q psy2684          79 DMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLE  158 (356)
Q Consensus        79 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (356)
                      .+|+++   |.++.-.+.              ..+++.+|.-   .                      .+        +.
T Consensus       214 R~Gkvv---gt~~~~~~~--------------t~~ela~lMv---G----------------------~~--------v~  243 (501)
T COG3845         214 RRGKVV---GTVDPVAET--------------TEEELAELMV---G----------------------RE--------VV  243 (501)
T ss_pred             eCCeEE---eeecCCCCC--------------CHHHHHHHhc---C----------------------Cc--------cc
Confidence            999975   332210000              0001111110   0                      00        00


Q ss_pred             CCcceeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCcee
Q psy2684         159 KPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL  238 (356)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~  238 (356)
                      .+      .. ..+..+++++|++++++..-..+...++++||+|..||+++|.|-.|.|-+.|+.+|+|+.+|.+|+|.
T Consensus       244 ~~------~~-~~~~~pg~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~  316 (501)
T COG3845         244 LR------VV-KPPSTPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRIL  316 (501)
T ss_pred             cc------cc-cCCCCCCCeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEE
Confidence            00      00 122344578999999998764445789999999999999999999999999999999999999999999


Q ss_pred             EeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcC-CCCCCCCCHHHHHHHh-cC--
Q psy2684         239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSG-EHLFPDDTPCEYLMKL-FN--  314 (356)
Q Consensus       239 ~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~-~~l~~~~t~~e~~~~~-~~--  314 (356)
                      ++|.++.          |..+                    ........++|+|.+.. ..+.+++++.||+... +.  
T Consensus       317 l~G~~v~----------~~~~--------------------~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~  366 (501)
T COG3845         317 LNGKDVL----------GRLS--------------------PRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKK  366 (501)
T ss_pred             ECCEecc----------ccCC--------------------HHHHHhcCCccCChhhccCccccCccHHHHhhhhhcccc
Confidence            9998751          1110                    01112346889988763 4577889999987432 11  


Q ss_pred             -------CCH----HHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHc
Q psy2684         315 -------LPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT  355 (356)
Q Consensus       315 -------~~~----~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~  355 (356)
                             +..    ..++++++.|++.......|+.+||||++||+-+||-+
T Consensus       367 ~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl  418 (501)
T COG3845         367 PFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILAREL  418 (501)
T ss_pred             ccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhh
Confidence                   122    33567899999975555558899999999999999864

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.7e-35  Score=254.00  Aligned_cols=144  Identities=28%  Similarity=0.430  Sum_probs=120.9

Q ss_pred             CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      ++++++|+++.| ++..+|++||++|.+||+++|+||||||||||||||.++..|++|+|.++|.++...          
T Consensus         1 ~mi~i~~l~K~f-g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~----------   69 (240)
T COG1126           1 MMIEIKNLSKSF-GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDK----------   69 (240)
T ss_pred             CeEEEEeeeEEe-CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccch----------
Confidence            368999999999 778899999999999999999999999999999999999999999999998765211          


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh----cCCCHH----HHHHHHhhcCC
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLPYE----KSRRQLGMFGL  329 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~----~~~~~~----~~~~~L~~~~l  329 (356)
                           ..               + ...|.++|+|||++  ++||.+|+.||+...    .+.+.+    .+.++|+++||
T Consensus        70 -----~~---------------~-~~~R~~vGmVFQ~f--nLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL  126 (240)
T COG1126          70 -----KD---------------I-LKLRRKVGMVFQQF--NLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGL  126 (240)
T ss_pred             -----hh---------------H-HHHHHhcCeecccc--cccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCc
Confidence                 00               0 11256899999997  599999999998642    344443    45678999999


Q ss_pred             CCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         330 PSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       330 ~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .+..+.+ |.+|||||||||||||+|+
T Consensus       127 ~~ka~~y-P~qLSGGQqQRVAIARALa  152 (240)
T COG1126         127 ADKADAY-PAQLSGGQQQRVAIARALA  152 (240)
T ss_pred             hhhhhhC-ccccCcHHHHHHHHHHHHc
Confidence            9988775 5999999999999999974

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.9e-34  Score=277.45  Aligned_cols=262  Identities=21%  Similarity=0.282  Sum_probs=192.4

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEEe
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHLD   79 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l~   79 (356)
                      +.++.+||.||||.|.||+||..+++||||||||+.|+....+.|+++++++   |.+||+|||+++++.++||||.||.
T Consensus       140 ~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlR  219 (500)
T COG1129         140 DTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLR  219 (500)
T ss_pred             hhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEe
Confidence            5678999999999999999999999999999999999999999988887765   6899999999999999999999999


Q ss_pred             CCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhhcC
Q psy2684          80 MKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEK  159 (356)
Q Consensus        80 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (356)
                      +|+.+.....-+++..      .++          .+.|.  +.                        +.    ..    
T Consensus       220 DG~~v~~~~~~~~~~~------~~l----------v~~Mv--Gr------------------------~~----~~----  249 (500)
T COG1129         220 DGRVVGTRPTAAETSE------DEL----------VRLMV--GR------------------------EL----ED----  249 (500)
T ss_pred             CCEEeeecccccCCCH------HHH----------HHHhh--Cc------------------------ch----hh----
Confidence            9998742110011100      000          00000  00                        00    00    


Q ss_pred             CcceeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeE
Q psy2684         160 PREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL  239 (356)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~  239 (356)
                        .++.    +.....+.+++++++++..-     .++|+||++++||++||.|--|||+|-++++|.|..++.+|+|.+
T Consensus       250 --~~~~----~~~~~~~~~~l~v~~l~~~~-----~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l  318 (500)
T COG1129         250 --LFPE----PPEEGIGEPVLEVRNLSGGG-----KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILL  318 (500)
T ss_pred             --hccc----ccccCCCCcEEEEecCCCCC-----ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEE
Confidence              0000    00112346789999998532     589999999999999999999999999999999999999999999


Q ss_pred             eeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcC-CCCCCCCCHHHHHHHh-----c
Q psy2684         240 EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSG-EHLFPDDTPCEYLMKL-----F  313 (356)
Q Consensus       240 ~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~-~~l~~~~t~~e~~~~~-----~  313 (356)
                      +|..+....                               ........|+|++-+-. ..++..+++.+|+...     .
T Consensus       319 ~G~~v~~~s-------------------------------p~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~  367 (500)
T COG1129         319 DGKPVRIRS-------------------------------PRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFS  367 (500)
T ss_pred             CCEEccCCC-------------------------------HHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhc
Confidence            998764321                               00011235788887654 3577888888876321     1


Q ss_pred             -C--CC----HHHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         314 -N--LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       314 -~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                       .  ++    ...++++...+++.......++.+||||.||||.|||.|.
T Consensus       368 ~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~  417 (500)
T COG1129         368 RRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLA  417 (500)
T ss_pred             cccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHh
Confidence             0  11    1346678889999766666789999999999999999863

>PLN03232 ABC transporter C family member; Provisional

Probab=100.00  E-value=2.2e-33  Score=309.57  Aligned_cols=143  Identities=21%  Similarity=0.234  Sum_probs=113.6

Q ss_pred             cEEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         179 VLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       179 ~l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      .++++||+++|+++ .++|+|+||+|++||++||+|+||||||||+++|.|++.|++|+|.++|+++..-.         
T Consensus      1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~--------- 1304 (1495)
T PLN03232       1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFG--------- 1304 (1495)
T ss_pred             cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCC---------
Confidence            58999999999544 57999999999999999999999999999999999999999999999999874100         


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCcccc--
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHT--  335 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~~--  335 (356)
                                             ....+.+++|++|++  .+|+ -|+.+|+......+.+++++.++..++.+....  
T Consensus      1305 -----------------------~~~lR~~i~iVpQdp--~LF~-gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp 1358 (1495)
T PLN03232       1305 -----------------------LTDLRRVLSIIPQSP--VLFS-GTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNP 1358 (1495)
T ss_pred             -----------------------HHHHHhhcEEECCCC--eeeC-ccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCc
Confidence                                   011245799999998  3665 489999854335667788888887766432211  


Q ss_pred             --------CCCCCCChHHHHHHHHHHHcC
Q psy2684         336 --------IPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       336 --------~~~~~LSGGqkqRvalA~~~l  356 (356)
                              ..-..||||||||++|||+++
T Consensus      1359 ~GLdt~v~e~G~~LSgGQrQrlaLARALL 1387 (1495)
T PLN03232       1359 FGLDAEVSEGGENFSVGQRQLLSLARALL 1387 (1495)
T ss_pred             CCCCceecCCCCCCCHHHHHHHHHHHHHH
Confidence                    122579999999999999985

>PTZ00243 ABC transporter; Provisional

Probab=100.00  E-value=7e-33  Score=305.62  Aligned_cols=143  Identities=22%  Similarity=0.273  Sum_probs=114.9

Q ss_pred             cEEEecceeeeCCCc-cccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         179 VLGLHDVTFGYPGGK-VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~-~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      -|+++||+++|+++. .+|+|+||+|++||++||+|++|||||||+++|.|++.|++|+|.++|+++..-.         
T Consensus      1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~--------- 1378 (1560)
T PTZ00243       1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYG--------- 1378 (1560)
T ss_pred             eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCC---------
Confidence            489999999996553 5999999999999999999999999999999999999999999999999874100         


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCcccc--
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHT--  335 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~~--  335 (356)
                                             ....+.+|+|++|++.  +|. -|+.+|+......+.++++++++..++.+....  
T Consensus      1379 -----------------------l~~LR~~I~iVpQdp~--LF~-gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp 1432 (1560)
T PTZ00243       1379 -----------------------LRELRRQFSMIPQDPV--LFD-GTVRQNVDPFLEASSAEVWAALELVGLRERVASES 1432 (1560)
T ss_pred             -----------------------HHHHHhcceEECCCCc--ccc-ccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCc
Confidence                                   0112457999999983  664 499999854335677888999988887543211  


Q ss_pred             ----CC----CCCCChHHHHHHHHHHHcC
Q psy2684         336 ----IP----IRDLSGGQKARVALAELTL  356 (356)
Q Consensus       336 ----~~----~~~LSGGqkqRvalA~~~l  356 (356)
                          ..    -..||||||||++|||++|
T Consensus      1433 ~Gldt~vge~G~nLSgGQrQrLaLARALL 1461 (1560)
T PTZ00243       1433 EGIDSRVLEGGSNYSVGQRQLMCMARALL 1461 (1560)
T ss_pred             ccccccccCCcCcCCHHHHHHHHHHHHHh
Confidence                11    2579999999999999985

>PLN03130 ABC transporter C family member; Provisional

Probab=100.00  E-value=7.1e-33  Score=306.04  Aligned_cols=143  Identities=23%  Similarity=0.278  Sum_probs=113.3

Q ss_pred             cEEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         179 VLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       179 ~l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      -++++||+++|+++ .++|+|+||+|++||++||+|+||||||||+++|.|++.|++|+|.++|+++..-          
T Consensus      1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i---------- 1306 (1622)
T PLN03130       1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKF---------- 1306 (1622)
T ss_pred             cEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccC----------
Confidence            58999999999544 4699999999999999999999999999999999999999999999999987411          


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCcccc--
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHT--  335 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~~--  335 (356)
                         +                   ....+.++++++|++.  +|. -|+.+|+......++++++++++..++.+....  
T Consensus      1307 ---~-------------------l~~LR~~IsiVpQdp~--LF~-GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp 1361 (1622)
T PLN03130       1307 ---G-------------------LMDLRKVLGIIPQAPV--LFS-GTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNS 1361 (1622)
T ss_pred             ---C-------------------HHHHHhccEEECCCCc--ccc-ccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCc
Confidence               0                   0112457999999983  664 489999854445567788888877766332111  


Q ss_pred             ----C----CCCCCChHHHHHHHHHHHcC
Q psy2684         336 ----I----PIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       336 ----~----~~~~LSGGqkqRvalA~~~l  356 (356)
                          .    .-..||||||||++|||++|
T Consensus      1362 ~GLdt~Vge~G~nLSgGQrQrlaLARALL 1390 (1622)
T PLN03130       1362 LGLDAEVSEAGENFSVGQRQLLSLARALL 1390 (1622)
T ss_pred             cccCccccCCCCCCCHHHHHHHHHHHHHH
Confidence                1    22479999999999999985

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=100.00  E-value=1.5e-32  Score=303.34  Aligned_cols=144  Identities=21%  Similarity=0.261  Sum_probs=113.8

Q ss_pred             CcEEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684         178 PVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG  256 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG  256 (356)
                      .-++++||+++|+++ .++|+|+||+|++||++||+|++|||||||+++|.|++.|++|+|.++|+++..-.        
T Consensus      1283 g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~-------- 1354 (1522)
T TIGR00957      1283 GRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIG-------- 1354 (1522)
T ss_pred             CcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccC--------
Confidence            358999999999644 46999999999999999999999999999999999999999999999999874110        


Q ss_pred             CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCccc--
Q psy2684         257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAH--  334 (356)
Q Consensus       257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~--  334 (356)
                                              ....+.+++|++|+|  .+|. -|+.+|+.-....+.++++++++..++.+...  
T Consensus      1355 ------------------------~~~LR~~i~iVpQdp--~LF~-gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~l 1407 (1522)
T TIGR00957      1355 ------------------------LHDLRFKITIIPQDP--VLFS-GSLRMNLDPFSQYSDEEVWWALELAHLKTFVSAL 1407 (1522)
T ss_pred             ------------------------HHHHHhcCeEECCCC--cccC-ccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhC
Confidence                                    011245799999998  3665 48999984333567788888888777643211  


Q ss_pred             ----cCCC----CCCChHHHHHHHHHHHcC
Q psy2684         335 ----TIPI----RDLSGGQKARVALAELTL  356 (356)
Q Consensus       335 ----~~~~----~~LSGGqkqRvalA~~~l  356 (356)
                          +..+    ..||||||||++|||++|
T Consensus      1408 p~GLdt~v~e~G~~LSgGQrQrl~LARALL 1437 (1522)
T TIGR00957      1408 PDKLDHECAEGGENLSVGQRQLVCLARALL 1437 (1522)
T ss_pred             ccCCCceecCCCCcCCHHHHHHHHHHHHHH
Confidence                1122    569999999999999985

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=2.4e-32  Score=299.30  Aligned_cols=78  Identities=26%  Similarity=0.479  Sum_probs=71.5

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      +....+||||||||++|||||+.+|+||||||||++||+.+...+.+.|+++    +.|+|+||||++.+ ..||+|++|
T Consensus       574 g~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i-~~aD~Iivl  652 (1466)
T PTZ00265        574 GSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTI-RYANTIFVL  652 (1466)
T ss_pred             CCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHH-HhCCEEEEE
Confidence            3557889999999999999999999999999999999999999988888876    57999999999998 579999999


Q ss_pred             eCC
Q psy2684          79 DMK   81 (356)
Q Consensus        79 ~~g   81 (356)
                      ++|
T Consensus       653 ~~g  655 (1466)
T PTZ00265        653 SNR  655 (1466)
T ss_pred             eCC
Confidence            886

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=100.00  E-value=6.9e-33  Score=259.56  Aligned_cols=257  Identities=25%  Similarity=0.341  Sum_probs=165.7

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .+|.+++|||||.||++||++++.+.|++++||||++||...+-..-+.++++   +.+||+|+||+..|+-++|-|.++
T Consensus       207 l~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~  286 (591)
T COG1245         207 LDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHIL  286 (591)
T ss_pred             hhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEE
Confidence            57889999999999999999999999999999999999998876655555544   579999999999999999988888


Q ss_pred             eCCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhhc
Q psy2684          79 DMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLE  158 (356)
Q Consensus        79 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (356)
                      ...     +|-|..+...+..+  .-..+|-+           +.                     +.       .+.+ 
T Consensus       287 YG~-----pg~YGvvs~p~svr--~gIN~yL~-----------Gy---------------------l~-------~EN~-  319 (591)
T COG1245         287 YGE-----PGVYGVVSKPKSVR--VGINEYLK-----------GY---------------------LP-------EENV-  319 (591)
T ss_pred             ecC-----CccceEeccchHHH--HHHHHHHh-----------cc---------------------Cc-------hhcc-
Confidence            642     22222221111100  00000000           00                     00       0000 


Q ss_pred             CCcceeeEEEecCCC-CCC-CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCc
Q psy2684         159 KPREYIVKFRFPNPP-YLP-PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGK  236 (356)
Q Consensus       159 ~~~~~~~~~~~~~~~-~~~-~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~  236 (356)
                      +-+..++.|...++. ... ..+++..++++.| ++ ..|.--+=+|+.||+++++||||-|||||+++|+|.++|++|.
T Consensus       320 R~R~~~I~F~~~~~~~~~~~~~lv~y~~~~k~~-g~-F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~  397 (591)
T COG1245         320 RFRPEEIEFEEKPPRDDKARDTLVEYPDLKKTY-GD-FKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS  397 (591)
T ss_pred             cccccceeeeccCcccccccceeeecchheeec-Cc-eEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC
Confidence            001112223222211 112 4567777777777 32 2222222345667788888888888888888888888887775


Q ss_pred             eeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC--
Q psy2684         237 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN--  314 (356)
Q Consensus       237 i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~--  314 (356)
                                                                    ....+++|=||...  -..+.|+.+.+.....  
T Consensus       398 ----------------------------------------------~~~~~vSyKPQyI~--~~~~gtV~~~l~~~~~~~  429 (591)
T COG1245         398 ----------------------------------------------EEDLKVSYKPQYIS--PDYDGTVEDLLRSAIRSA  429 (591)
T ss_pred             ----------------------------------------------CccceEeecceeec--CCCCCcHHHHHHHhhhhh
Confidence                                                          11246788888653  2346688887765432  


Q ss_pred             CCH-HHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         315 LPY-EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       315 ~~~-~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ... .-..++++-+.+....++ ++..|||||.||||||.+|.
T Consensus       430 ~~~s~~~~ei~~pl~l~~i~e~-~v~~LSGGELQRvaIaa~L~  471 (591)
T COG1245         430 FGSSYFKTEIVKPLNLEDLLER-PVDELSGGELQRVAIAAALS  471 (591)
T ss_pred             cccchhHHhhcCccchHHHHhc-ccccCCchhHHHHHHHHHhc
Confidence            111 123357778888877764 89999999999999999873

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.8e-33  Score=248.11  Aligned_cols=138  Identities=31%  Similarity=0.488  Sum_probs=118.3

Q ss_pred             CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      .++.++++++.| ++..+|+|+||+|.+||+++|+||||||||||||+++|+.+|++|+|.++|..+.            
T Consensus         2 ~~l~i~~v~~~f-~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~------------   68 (248)
T COG1116           2 ALLEIEGVSKSF-GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVT------------   68 (248)
T ss_pred             ceEEEEeeEEEe-CceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccC------------
Confidence            358999999999 5688999999999999999999999999999999999999999999999876542            


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC---CC----HHHHHHHHhhcCCC
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN---LP----YEKSRRQLGMFGLP  330 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~---~~----~~~~~~~L~~~~l~  330 (356)
                                               .+...+||+||++  .++|..|+.+|+.....   .+    .+.++++|+.+||.
T Consensus        69 -------------------------~p~~~~~~vFQ~~--~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~  121 (248)
T COG1116          69 -------------------------GPGPDIGYVFQED--ALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLA  121 (248)
T ss_pred             -------------------------CCCCCEEEEeccC--cccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCc
Confidence                                     1234689999997  59999999999854322   22    24578899999999


Q ss_pred             CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         331 SYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       331 ~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +..+.+ |++|||||||||||||+++
T Consensus       122 ~~~~~~-P~qLSGGMrQRVaiARAL~  146 (248)
T COG1116         122 GFEDKY-PHQLSGGMRQRVAIARALA  146 (248)
T ss_pred             chhhcC-ccccChHHHHHHHHHHHHh
Confidence            988874 5999999999999999974

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=100.00  E-value=3.1e-31  Score=277.05  Aligned_cols=162  Identities=25%  Similarity=0.285  Sum_probs=121.0

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEP--TLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDII   76 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p--~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~   76 (356)
                      .++++.+|||||+||++||++|+.+|  ++|||||||++||+..+.+|.++|+++   +.|||+||||++++. .||+|+
T Consensus       483 l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~-~aD~vi  561 (943)
T PRK00349        483 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIR-AADYIV  561 (943)
T ss_pred             CCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEE
Confidence            58999999999999999999999997  999999999999999999988887654   679999999999986 599999


Q ss_pred             EE------eCCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCC
Q psy2684          77 HL------DMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDD  150 (356)
Q Consensus        77 ~l------~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (356)
                      +|      ++|+++ +.|+++.+.....    .+...+         +.  +                         .. 
T Consensus       562 ~LgpgaG~~~G~iv-~~g~~~e~~~~~~----~l~~~~---------l~--~-------------------------~~-  599 (943)
T PRK00349        562 DIGPGAGVHGGEVV-ASGTPEEIMKNPN----SLTGQY---------LS--G-------------------------KK-  599 (943)
T ss_pred             EeccccCCCCCEEe-eccCHHHHhcChh----heeehh---------hc--c-------------------------cc-
Confidence            99      888886 4677765432100    000000         00  0                         00 


Q ss_pred             CCchhhhcCCcceeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhh
Q psy2684         151 DEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL  226 (356)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l  226 (356)
                        ..   ..+.         .......+++++++++.      ..|+++||+|+.|++++|+|+||||||||++.+
T Consensus       600 --~~---~~~~---------~~~~~~~~~L~v~~l~~------~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~  655 (943)
T PRK00349        600 --KI---EVPK---------ERRKGNGKFLKLKGARE------NNLKNVDVEIPLGKFTCVTGVSGSGKSTLINET  655 (943)
T ss_pred             --cc---cccc---------cccCCCcceEEecCCcc------CCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHH
Confidence              00   0000         00001234688999862      258999999999999999999999999999865

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.98  E-value=1.1e-32  Score=242.85  Aligned_cols=148  Identities=34%  Similarity=0.423  Sum_probs=119.5

Q ss_pred             cEEEecceeeeCCC---ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684         179 VLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV  255 (356)
Q Consensus       179 ~l~~~~l~~~~~~~---~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv  255 (356)
                      +++++|+++.|..+   ..+|+++||+|++||+++|+|||||||||||++|.|+.+|++|.|.++|.++....       
T Consensus         1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~-------   73 (226)
T COG1136           1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLS-------   73 (226)
T ss_pred             CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCC-------
Confidence            36789999988533   36899999999999999999999999999999999999999999999998764211       


Q ss_pred             cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHH---hcCCC----HHHHHHHHhhcC
Q psy2684         256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK---LFNLP----YEKSRRQLGMFG  328 (356)
Q Consensus       256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~---~~~~~----~~~~~~~L~~~~  328 (356)
                                           .......++.+|||+||++  .+.+++|+.|++..   ..+..    ...+..+++.+|
T Consensus        74 ---------------------~~~~~~~R~~~iGfvFQ~~--nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lg  130 (226)
T COG1136          74 ---------------------EKELAKLRRKKIGFVFQNF--NLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLG  130 (226)
T ss_pred             ---------------------HHHHHHHHHHhEEEECccC--CCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcC
Confidence                                 1111122356799999997  59999999999863   22332    344667889999


Q ss_pred             CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         329 LPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       329 l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +.+...+++|.+|||||||||||||+++
T Consensus       131 l~~~~~~~~p~eLSGGqqQRVAIARAL~  158 (226)
T COG1136         131 LEDRLLKKKPSELSGGQQQRVAIARALI  158 (226)
T ss_pred             ChhhhccCCchhcCHHHHHHHHHHHHHh
Confidence            9977775678999999999999999974

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.98  E-value=1.2e-32  Score=257.60  Aligned_cols=142  Identities=30%  Similarity=0.486  Sum_probs=121.7

Q ss_pred             CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684         177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG  256 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG  256 (356)
                      .+.++++|+++.| ++..+++|+||+|.+||+++|+|||||||||+|++|+|+..|++|+|.++|.++..          
T Consensus         3 ~~~l~i~~v~k~y-g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~----------   71 (352)
T COG3842           3 KPALEIRNVSKSF-GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITD----------   71 (352)
T ss_pred             CceEEEEeeeeec-CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCC----------
Confidence            3578999999999 57889999999999999999999999999999999999999999999999998751          


Q ss_pred             CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC----CCH----HHHHHHHhhcC
Q psy2684         257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN----LPY----EKSRRQLGMFG  328 (356)
Q Consensus       257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~----~~~----~~~~~~L~~~~  328 (356)
                                      ++|        .+++||+|||++  .+||.+||.+|+.....    ...    +.+.++|+.++
T Consensus        72 ----------------lpp--------~kR~ig~VFQ~Y--ALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~  125 (352)
T COG3842          72 ----------------VPP--------EKRPIGMVFQSY--ALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVG  125 (352)
T ss_pred             ----------------CCh--------hhcccceeecCc--ccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcC
Confidence                            111        246799999997  59999999999864322    222    35778999999


Q ss_pred             CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         329 LPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       329 l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +.+...+ ++++|||||||||||||+|.
T Consensus       126 L~~~~~R-~p~qLSGGQqQRVALARAL~  152 (352)
T COG3842         126 LEGFADR-KPHQLSGGQQQRVALARALV  152 (352)
T ss_pred             chhhhhh-ChhhhChHHHHHHHHHHHhh
Confidence            9998876 55999999999999999973

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.98  E-value=9.3e-33  Score=232.17  Aligned_cols=146  Identities=32%  Similarity=0.503  Sum_probs=122.6

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      |++++||++.|+++.++|+|+||+|++||++-|+||||||||||+++|.+..+|+.|+|.++|.++..-.+..+-     
T Consensus         1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP-----   75 (223)
T COG2884           1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIP-----   75 (223)
T ss_pred             CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccc-----
Confidence            578999999998887799999999999999999999999999999999999999999999999987532222211     


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcCCCC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPS  331 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~l~~  331 (356)
                                              ..+++||+|||++  .+.++.|+.|+++..   .+.+.    .++.+.|+++||.+
T Consensus        76 ------------------------~LRR~IGvVFQD~--rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~  129 (223)
T COG2884          76 ------------------------FLRRQIGVVFQDF--RLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKH  129 (223)
T ss_pred             ------------------------hhhheeeeEeeec--cccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccch
Confidence                                    1257899999997  488999999998653   34443    34567899999998


Q ss_pred             ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         332 YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       332 ~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ....- |.+|||||||||+|||+++
T Consensus       130 k~~~l-P~~LSGGEQQRvaIARAiV  153 (223)
T COG2884         130 KARAL-PSQLSGGEQQRVAIARAIV  153 (223)
T ss_pred             hhhcC-ccccCchHHHHHHHHHHHc
Confidence            87764 4899999999999999863

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.98  E-value=1.4e-30  Score=271.56  Aligned_cols=160  Identities=23%  Similarity=0.280  Sum_probs=118.7

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEP--TLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDII   76 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p--~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~   76 (356)
                      .++++.+|||||+||++||++|+.+|  ++|||||||++||+..+.+|.++|+++   +.|||+||||++++. .||+|+
T Consensus       481 l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~-~aD~vi  559 (924)
T TIGR00630       481 LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIR-AADYVI  559 (924)
T ss_pred             cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh-hCCEEE
Confidence            47899999999999999999999986  899999999999999999988888754   579999999999996 899999


Q ss_pred             EE------eCCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCC
Q psy2684          77 HL------DMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDD  150 (356)
Q Consensus        77 ~l------~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (356)
                      +|      ++|+++. .|+.+.+.....    .....+         +                           .   .
T Consensus       560 ~LgpgaG~~~G~Iv~-~g~~~el~~~~~----~lt~~~---------l---------------------------~---~  595 (924)
T TIGR00630       560 DIGPGAGIHGGEVVA-SGTPEEILANPD----SLTGQY---------L---------------------------S---G  595 (924)
T ss_pred             EecccccCCCCEEee-ccCHHHHhcCch----heeeec---------c---------------------------c---c
Confidence            99      7888864 566544321000    000000         0                           0   0


Q ss_pred             CCchhhhcCCcceeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhh
Q psy2684         151 DEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLN  224 (356)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~  224 (356)
                      ...   ...+.         .......++++++|++.      ..|+++||+|+.|++++|+|+||||||||++
T Consensus       596 ~~~---~~~~~---------~~~~~~~~~l~l~~~~~------~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~  651 (924)
T TIGR00630       596 KKK---IEVPK---------ERRPGNGKFLTLKGARE------NNLKNITVSIPLGLFTCITGVSGSGKSTLIN  651 (924)
T ss_pred             ccc---ccccc---------cccCCCcceEEEEeCcc------CCcCceEEEEeCCCEEEEECCCCCCHHHHHH
Confidence            000   00000         00011234789999873      2599999999999999999999999999998

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=7e-32  Score=241.00  Aligned_cols=142  Identities=30%  Similarity=0.408  Sum_probs=116.6

Q ss_pred             CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      ++++++|+++.|.++ ++|+|+||+|++|++++|+||||||||||++++.|+++|++|+|.+.|.++..           
T Consensus         3 ~~i~v~nl~v~y~~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~-----------   70 (254)
T COG1121           3 PMIEVENLTVSYGNR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRK-----------   70 (254)
T ss_pred             cEEEEeeeEEEECCE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccc-----------
Confidence            578999999999434 79999999999999999999999999999999999999999999998754320           


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc----C-------CCHHHHHHHHhh
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF----N-------LPYEKSRRQLGM  326 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~----~-------~~~~~~~~~L~~  326 (356)
                                              ...+.+||||||.......-..||.|.+....    +       .+.+.++++|++
T Consensus        71 ------------------------~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~  126 (254)
T COG1121          71 ------------------------RRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALER  126 (254)
T ss_pred             ------------------------cccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHH
Confidence                                    11235899999976433444578999886421    1       123678899999


Q ss_pred             cCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         327 FGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       327 ~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +|+.+..++ ++.+|||||+|||.|||+|+
T Consensus       127 Vgm~~~~~r-~i~~LSGGQ~QRV~lARAL~  155 (254)
T COG1121         127 VGMEDLRDR-QIGELSGGQKQRVLLARALA  155 (254)
T ss_pred             cCchhhhCC-cccccCcHHHHHHHHHHHhc
Confidence            999987764 89999999999999999984

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.97  E-value=1.4e-30  Score=282.56  Aligned_cols=159  Identities=25%  Similarity=0.302  Sum_probs=118.1

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEP--TLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDII   76 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p--~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~   76 (356)
                      .+|++.+|||||+||++||++|+.+|  ++|||||||++||+..+++|.++|+++   +.|||+||||+++ .++||+|+
T Consensus       470 ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~~v-i~~aDrVi  548 (1809)
T PRK00635        470 PERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDEQM-ISLADRII  548 (1809)
T ss_pred             CCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHH-HHhCCEEE
Confidence            47899999999999999999999999  899999999999999999988887754   6799999999995 47899999


Q ss_pred             EEe------CCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCC
Q psy2684          77 HLD------MKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDD  150 (356)
Q Consensus        77 ~l~------~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (356)
                      +|.      +|+++ +.|+++.+.....    ....          .+..                          ....
T Consensus       549 ~L~pGag~~gG~Iv-~~G~~~eil~~~~----~l~~----------~~l~--------------------------~~~~  587 (1809)
T PRK00635        549 DIGPGAGIFGGEVL-FNGSPREFLAKSD----SLTA----------KYLR--------------------------QELT  587 (1809)
T ss_pred             EEcCCcccCCCEEE-EecCHHHHhhChH----HHHH----------HHhc--------------------------Cccc
Confidence            997      56765 4677665532100    0000          0000                          0000


Q ss_pred             CCchhhhcCCcceeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhh
Q psy2684         151 DEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLN  224 (356)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~  224 (356)
                       .     ..+.          ......+.+++++++.      ..|+++||+|+.|++++|+|+||||||||++
T Consensus       588 -~-----~~~~----------~~~~~~~~L~l~~~~~------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~  639 (1809)
T PRK00635        588 -I-----PIPE----------KRTNSLGTLTLSKATK------HNLKDLTISLPLGRLTVVTGVSGSGKSSLIN  639 (1809)
T ss_pred             -c-----cCcc----------cccCCCCeEEEecccc------CCccceEEEEcCCcEEEEEcCCCCCHHHHHH
Confidence             0     0000          0001123688888863      2699999999999999999999999999999

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.97  E-value=4.7e-30  Score=282.93  Aligned_cols=142  Identities=25%  Similarity=0.334  Sum_probs=112.9

Q ss_pred             cEEEecceeeeCC-CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         179 VLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       179 ~l~~~~l~~~~~~-~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      -++++||+++|++ ..++|+|+||+|++||++||+|+||||||||+++|.|++. .+|+|.++|+++..-.         
T Consensus      1217 ~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~--------- 1286 (1490)
T TIGR01271      1217 QMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVT--------- 1286 (1490)
T ss_pred             eEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCC---------
Confidence            5899999999964 3579999999999999999999999999999999999997 8999999999874100         


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCccccC-
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTI-  336 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~~~-  336 (356)
                                             ....+.+++|++|+|.  +|. -|+.+|+.-....+.++++++|+..++....... 
T Consensus      1287 -----------------------~~~lR~~is~IpQdp~--LF~-GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp 1340 (1490)
T TIGR01271      1287 -----------------------LQTWRKAFGVIPQKVF--IFS-GTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFP 1340 (1490)
T ss_pred             -----------------------HHHHHhceEEEeCCCc--cCc-cCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCc
Confidence                                   0112457999999983  665 4899998433345778889999988874322211 


Q ss_pred             -----CC----CCCChHHHHHHHHHHHcC
Q psy2684         337 -----PI----RDLSGGQKARVALAELTL  356 (356)
Q Consensus       337 -----~~----~~LSGGqkqRvalA~~~l  356 (356)
                           ++    ..||||||||++|||++|
T Consensus      1341 ~GLdt~v~e~G~nLSgGQrQrL~LARALL 1369 (1490)
T TIGR01271      1341 DKLDFVLVDGGYVLSNGHKQLMCLARSIL 1369 (1490)
T ss_pred             cccccccccCCCcCCHHHHHHHHHHHHHh
Confidence                 22    369999999999999985

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=1.7e-32  Score=238.36  Aligned_cols=147  Identities=31%  Similarity=0.461  Sum_probs=121.4

Q ss_pred             CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      .+++++|+++.|++++.+|++|||+|++||+++|+|||||||||||++|.|+..|++|+|.++|.++..          .
T Consensus         2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~----------~   71 (258)
T COG3638           2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITK----------L   71 (258)
T ss_pred             ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhc----------c
Confidence            478999999999988999999999999999999999999999999999999999999999999987641          1


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-----------cCCC----HHHHHH
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-----------FNLP----YEKSRR  322 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-----------~~~~----~~~~~~  322 (356)
                      +|                   .-....+.+|||+||.+  .+.+..++.+++...           +++.    ...+-+
T Consensus        72 ~~-------------------k~lr~~r~~iGmIfQ~~--nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~  130 (258)
T COG3638          72 KG-------------------KELRKLRRDIGMIFQQF--NLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALD  130 (258)
T ss_pred             ch-------------------HHHHHHHHhceeEeccC--CcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHH
Confidence            11                   11122356899999997  489999999998532           2221    234667


Q ss_pred             HHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         323 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       323 ~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .|+++|+.+.... +..+|||||||||+|||+|.
T Consensus       131 aLervgi~~~A~q-ra~~LSGGQQQRVaIARaL~  163 (258)
T COG3638         131 ALERVGILDKAYQ-RASTLSGGQQQRVAIARALV  163 (258)
T ss_pred             HHHHcCcHHHHHH-HhccCCcchhHHHHHHHHHh
Confidence            8999999887765 67999999999999999974

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.97  E-value=9.1e-32  Score=250.30  Aligned_cols=140  Identities=30%  Similarity=0.460  Sum_probs=118.9

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      .++++|+++.| ++..+++++||+|..||+++|+||||||||||||+|+|++.|++|+|.++|.+++.            
T Consensus         3 ~i~l~~v~K~y-g~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~------------   69 (338)
T COG3839           3 ELELKNVRKSF-GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTD------------   69 (338)
T ss_pred             EEEEeeeEEEc-CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCC------------
Confidence            58999999999 43339999999999999999999999999999999999999999999999988641            


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCC----HHHHHHHHhhcCCCC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLP----YEKSRRQLGMFGLPS  331 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~----~~~~~~~L~~~~l~~  331 (356)
                                    +.|        ..++|+||||++  .+||.+||.+|+....   +.+    ..++++..+.+++.+
T Consensus        70 --------------l~P--------~~R~iamVFQ~y--ALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~  125 (338)
T COG3839          70 --------------LPP--------EKRGIAMVFQNY--ALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEH  125 (338)
T ss_pred             --------------CCh--------hHCCEEEEeCCc--cccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChh
Confidence                          111        235799999997  5999999999986532   223    345778899999999


Q ss_pred             ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         332 YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       332 ~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ..+++ |.+|||||||||||||+++
T Consensus       126 lL~r~-P~~LSGGQrQRVAlaRAlV  149 (338)
T COG3839         126 LLNRK-PLQLSGGQRQRVALARALV  149 (338)
T ss_pred             HHhcC-cccCChhhHHHHHHHHHHh
Confidence            98875 5999999999999999974

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.97  E-value=2.1e-31  Score=233.14  Aligned_cols=148  Identities=27%  Similarity=0.392  Sum_probs=123.4

Q ss_pred             CcEEEecceeeeCCCc---cccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeee
Q psy2684         178 PVLGLHDVTFGYPGGK---VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVAL  254 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~---~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ial  254 (356)
                      ++++++|+++.|+.+.   .++++|||+|.+||++||+|+||||||||.++|+|+.+|+.|+|.++|..+....+     
T Consensus         2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~-----   76 (252)
T COG1124           2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKR-----   76 (252)
T ss_pred             ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCcccc-----
Confidence            4789999999995443   49999999999999999999999999999999999999999999999876532100     


Q ss_pred             ecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC---C--CHHHHHHHHhhcCC
Q psy2684         255 VGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN---L--PYEKSRRQLGMFGL  329 (356)
Q Consensus       255 vG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~---~--~~~~~~~~L~~~~l  329 (356)
                                                .......|.+|||||...++|..|+.+.+.....   .  ...++.++|+.+|+
T Consensus        77 --------------------------~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL  130 (252)
T COG1124          77 --------------------------AKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGL  130 (252)
T ss_pred             --------------------------chhhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCC
Confidence                                      0022457999999999899999999998866432   2  23558899999999


Q ss_pred             CCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         330 PSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       330 ~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +....++.|++|||||+|||||||+|.
T Consensus       131 ~~~~l~R~P~eLSGGQ~QRiaIARAL~  157 (252)
T COG1124         131 PPSFLDRRPHELSGGQRQRIAIARALI  157 (252)
T ss_pred             CHHHHhcCchhcChhHHHHHHHHHHhc
Confidence            987666677999999999999999973

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.97  E-value=1e-29  Score=278.27  Aligned_cols=139  Identities=23%  Similarity=0.305  Sum_probs=111.1

Q ss_pred             cEEEecceeeeC---CCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc---cCCCceeEeeeccccCcCCee
Q psy2684         179 VLGLHDVTFGYP---GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT---PNKGKVLLEKVNFGLDMESRV  252 (356)
Q Consensus       179 ~l~~~~l~~~~~---~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~---p~~G~i~~~g~~~~~~~~~~i  252 (356)
                      +++++|+++.|+   +.+.+|+|+|++|.+|++++|+||||||||||+++|+|+.+   |++|+|.++|.++..      
T Consensus       759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~------  832 (1394)
T TIGR00956       759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS------  832 (1394)
T ss_pred             eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh------
Confidence            478999999884   24579999999999999999999999999999999999998   788999999876420      


Q ss_pred             eeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc------CCCH----HHHHH
Q psy2684         253 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF------NLPY----EKSRR  322 (356)
Q Consensus       253 alvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~------~~~~----~~~~~  322 (356)
                                                    ..++.+||++|+.  .+++..|+.|++....      ..+.    +.+.+
T Consensus       833 ------------------------------~~~~~i~yv~Q~~--~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~  880 (1394)
T TIGR00956       833 ------------------------------SFQRSIGYVQQQD--LHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEE  880 (1394)
T ss_pred             ------------------------------hhhcceeeecccc--cCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence                                          1134689999985  3677899999885321      1222    34678


Q ss_pred             HHhhcCCCCccccCCCC----CCChHHHHHHHHHHHcC
Q psy2684         323 QLGMFGLPSYAHTIPIR----DLSGGQKARVALAELTL  356 (356)
Q Consensus       323 ~L~~~~l~~~~~~~~~~----~LSGGqkqRvalA~~~l  356 (356)
                      +++.+++.+..+. .++    .|||||||||+||++|+
T Consensus       881 ~l~~l~L~~~~d~-~v~~~~~~LSgGqrqRl~Ia~aL~  917 (1394)
T TIGR00956       881 VIKLLEMESYADA-VVGVPGEGLNVEQRKRLTIGVELV  917 (1394)
T ss_pred             HHHHcCChhhCCC-eeCCCCCCCCHHHhhHHHHHHHHH
Confidence            8999999876554 455    79999999999999874

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=7.7e-32  Score=242.74  Aligned_cols=146  Identities=26%  Similarity=0.341  Sum_probs=120.0

Q ss_pred             cEEEecceeeeCCC----ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeee
Q psy2684         179 VLGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVAL  254 (356)
Q Consensus       179 ~l~~~~l~~~~~~~----~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ial  254 (356)
                      |++++++++.|...    ..+++|+||+|++||++||+|.||||||||+|++.++.+|++|+|.++|.++..-       
T Consensus         1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l-------   73 (339)
T COG1135           1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTAL-------   73 (339)
T ss_pred             CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccC-------
Confidence            57899999999541    3699999999999999999999999999999999999999999999999887421       


Q ss_pred             ecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhc
Q psy2684         255 VGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMF  327 (356)
Q Consensus       255 vG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~  327 (356)
                                            .+.-....+++|||+||+++  ++...|+.++++..   .+.+.    .++.++|+.+
T Consensus        74 ----------------------~~~~Lr~~R~~IGMIFQhFn--LLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelV  129 (339)
T COG1135          74 ----------------------SEAELRQLRQKIGMIFQHFN--LLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELV  129 (339)
T ss_pred             ----------------------ChHHHHHHHhhccEEecccc--ccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHc
Confidence                                  01111234678999999974  88899999998653   34443    3466789999


Q ss_pred             CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         328 GLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       328 ~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ||++..+. +|.+|||||||||+|||+|.
T Consensus       130 gL~dk~~~-yP~qLSGGQKQRVaIARALa  157 (339)
T COG1135         130 GLSDKADR-YPAQLSGGQKQRVAIARALA  157 (339)
T ss_pred             CChhhhcc-CchhcCcchhhHHHHHHHHh
Confidence            99977766 45899999999999999974

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.97  E-value=7.3e-32  Score=236.35  Aligned_cols=142  Identities=27%  Similarity=0.439  Sum_probs=119.6

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      |++++|+|+.| +++.+++++||+|++||+++++|||||||||+|++|.+++.|++|+|+++|.++....          
T Consensus         1 MI~~~nvsk~y-~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d----------   69 (309)
T COG1125           1 MIEFENVSKRY-GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLD----------   69 (309)
T ss_pred             Cceeeeeehhc-CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCC----------
Confidence            57899999999 6788999999999999999999999999999999999999999999999998864110          


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCCH----HHHHHHHhhcCCCC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLPY----EKSRRQLGMFGLPS  331 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~~----~~~~~~L~~~~l~~  331 (356)
                                            ....|++|||+-|..  .+||.+|+.+++....   +++.    +++.++|..+||++
T Consensus        70 ----------------------~~~LRr~IGYviQqi--gLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p  125 (309)
T COG1125          70 ----------------------PVELRRKIGYVIQQI--GLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDP  125 (309)
T ss_pred             ----------------------HHHHHHhhhhhhhhc--ccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCH
Confidence                                  011256899999986  5999999999987543   3443    45778999999975


Q ss_pred             --ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         332 --YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       332 --~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                        +.+ ++|++|||||||||.+||+|.
T Consensus       126 ~~~~~-RyP~eLSGGQQQRVGv~RALA  151 (309)
T COG1125         126 SEYAD-RYPHELSGGQQQRVGVARALA  151 (309)
T ss_pred             HHHhh-cCchhcCcchhhHHHHHHHHh
Confidence              455 466999999999999999973

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.97  E-value=7.5e-31  Score=235.52  Aligned_cols=142  Identities=31%  Similarity=0.500  Sum_probs=116.7

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      +++++|++++| +++++++|+||+|++|++++|+|||||||||||++|+|+++|.+|+|.++|.++....          
T Consensus         2 ~L~~~~ls~~y-~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~----------   70 (258)
T COG1120           2 MLEVENLSFGY-GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLS----------   70 (258)
T ss_pred             eeEEEEEEEEE-CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcC----------
Confidence            58999999999 6789999999999999999999999999999999999999999999999998764210          


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-------cC-CC---HHHHHHHHhhc
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-------FN-LP---YEKSRRQLGMF  327 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-------~~-~~---~~~~~~~L~~~  327 (356)
                                            .....++++|++|.+.  .....|+.|.+...       +. .+   .+.+.+.|+.+
T Consensus        71 ----------------------~kelAk~ia~vpQ~~~--~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~  126 (258)
T COG1120          71 ----------------------PKELAKKLAYVPQSPS--APFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELL  126 (258)
T ss_pred             ----------------------HHHHhhhEEEeccCCC--CCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHh
Confidence                                  0112357999999863  45577888877532       11 12   23467789999


Q ss_pred             CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         328 GLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       328 ~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      |+.+..++ ++.+|||||||||.||++|.
T Consensus       127 ~~~~la~r-~~~~LSGGerQrv~iArALa  154 (258)
T COG1120         127 GLEHLADR-PVDELSGGERQRVLIARALA  154 (258)
T ss_pred             CcHHHhcC-cccccChhHHHHHHHHHHHh
Confidence            99998875 79999999999999999973

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.97  E-value=1.2e-30  Score=227.47  Aligned_cols=147  Identities=33%  Similarity=0.471  Sum_probs=122.1

Q ss_pred             CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684         177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG  256 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG  256 (356)
                      .+++++++++++| +++.+++++||+|++||+++|+||||||||||+|+|.|+++|++|+|.++|.++.....       
T Consensus         6 ~~~I~vr~v~~~f-G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~-------   77 (263)
T COG1127           6 EPLIEVRGVTKSF-GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSE-------   77 (263)
T ss_pred             cceEEEeeeeeec-CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCH-------
Confidence            5689999999999 78899999999999999999999999999999999999999999999999988642110       


Q ss_pred             CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHH----hcCCCHHHHHH----HHhhcC
Q psy2684         257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK----LFNLPYEKSRR----QLGMFG  328 (356)
Q Consensus       257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~----~~~~~~~~~~~----~L~~~~  328 (356)
                                           .. ....+.++|++||..  .+|.++|+.||+..    ...+++..+++    .|+.+|
T Consensus        78 ---------------------~~-~~~ir~r~GvlFQ~g--ALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VG  133 (263)
T COG1127          78 ---------------------EE-LYEIRKRMGVLFQQG--ALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVG  133 (263)
T ss_pred             ---------------------HH-HHHHHhheeEEeecc--ccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcC
Confidence                                 00 111245799999986  59999999999854    34566665554    589999


Q ss_pred             CCCccccCCCCCCChHHHHHHHHHHHc
Q psy2684         329 LPSYAHTIPIRDLSGGQKARVALAELT  355 (356)
Q Consensus       329 l~~~~~~~~~~~LSGGqkqRvalA~~~  355 (356)
                      |.....++.|++|||||++|+||||++
T Consensus       134 L~~~~~~~~PsELSGGM~KRvaLARAi  160 (263)
T COG1127         134 LRGAAADLYPSELSGGMRKRVALARAI  160 (263)
T ss_pred             CChhhhhhCchhhcchHHHHHHHHHHH
Confidence            998844456699999999999999997

>KOG0054|consensus

Probab=99.96  E-value=1.2e-28  Score=261.49  Aligned_cols=145  Identities=23%  Similarity=0.333  Sum_probs=113.1

Q ss_pred             CCcEEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684         177 PPVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV  255 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv  255 (356)
                      .--++++|++.+|..+ ..+|+++||+|++||++||||..|||||||+.+|.++..|.+|+|.+||+|+..-        
T Consensus      1136 ~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~i-------- 1207 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKI-------- 1207 (1381)
T ss_pred             CCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccc--------
Confidence            4469999999999544 4699999999999999999999999999999999999999999999999997410        


Q ss_pred             cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCcccc
Q psy2684         256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHT  335 (356)
Q Consensus       256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~~  335 (356)
                      |                       + ...|.+++.+||+|.  +| +-|+..|+--....+++++++.|+..++......
T Consensus      1208 g-----------------------L-~dLRsrlsIIPQdPv--LF-sGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~ 1260 (1381)
T KOG0054|consen 1208 G-----------------------L-HDLRSRLSIIPQDPV--LF-SGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSS 1260 (1381)
T ss_pred             c-----------------------H-HHHHhcCeeeCCCCc--ee-cCccccccCcccccCHHHHHHHHHHhChHHHHhh
Confidence            0                       0 112568999999983  55 3466666533345677888888887766432221


Q ss_pred             C------C----CCCCChHHHHHHHHHHHcC
Q psy2684         336 I------P----IRDLSGGQKARVALAELTL  356 (356)
Q Consensus       336 ~------~----~~~LSGGqkqRvalA~~~l  356 (356)
                      .      +    -.++|-||||.++|||++|
T Consensus      1261 ~p~~Ld~~v~egG~N~SvGQRQLlCLARALL 1291 (1381)
T KOG0054|consen 1261 LPGGLDSEVSEGGENFSVGQRQLLCLARALL 1291 (1381)
T ss_pred             CCcCCCceecCCCccCChHHHHHHHHHHHHh
Confidence            1      1    2579999999999999986

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.96  E-value=7.7e-30  Score=229.36  Aligned_cols=142  Identities=27%  Similarity=0.372  Sum_probs=117.0

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      ++.++++++.| +...+++|||++|+.||.+++.|||||||||||++|+|++.|+.|.|.++|.-+...           
T Consensus         2 ~i~i~~~~~~~-~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~-----------   69 (345)
T COG1118           2 SIRINNVKKRF-GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDV-----------   69 (345)
T ss_pred             ceeehhhhhhc-ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccch-----------
Confidence            47889999999 677899999999999999999999999999999999999999999999998732100           


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC-----C----CHHHHHHHHhhcCC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN-----L----PYEKSRRQLGMFGL  329 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~-----~----~~~~~~~~L~~~~l  329 (356)
                                         .. .....++|||+||++.  +|+.+|+.+++.....     .    ...++.++|..+.+
T Consensus        70 -------------------~~-~~~~~R~VGfvFQ~YA--LF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL  127 (345)
T COG1118          70 -------------------SN-LAVRDRKVGFVFQHYA--LFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQL  127 (345)
T ss_pred             -------------------hc-cchhhcceeEEEechh--hcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcc
Confidence                               00 1112468999999974  9999999999865321     1    12456788999999


Q ss_pred             CCccccCCCCCCChHHHHHHHHHHHc
Q psy2684         330 PSYAHTIPIRDLSGGQKARVALAELT  355 (356)
Q Consensus       330 ~~~~~~~~~~~LSGGqkqRvalA~~~  355 (356)
                      ++..+++ |.+|||||||||||||+|
T Consensus       128 ~~la~ry-P~QLSGGQrQRVALARAL  152 (345)
T COG1118         128 EGLADRY-PAQLSGGQRQRVALARAL  152 (345)
T ss_pred             cchhhcC-chhcChHHHHHHHHHHHh
Confidence            9988775 599999999999999997

>PLN03140 ABC transporter G family member; Provisional

Probab=99.96  E-value=1.1e-27  Score=261.76  Aligned_cols=140  Identities=20%  Similarity=0.208  Sum_probs=107.7

Q ss_pred             cEEEecceeeeC------------CCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc--CCCceeEeeecc
Q psy2684         179 VLGLHDVTFGYP------------GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP--NKGKVLLEKVNF  244 (356)
Q Consensus       179 ~l~~~~l~~~~~------------~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p--~~G~i~~~g~~~  244 (356)
                      .+.++||++..+            +.+.+|+|+|+++++|++++|+||||||||||+++|+|..++  .+|+|.++|.+.
T Consensus       867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~  946 (1470)
T PLN03140        867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK  946 (1470)
T ss_pred             eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence            478899988763            123699999999999999999999999999999999999774  689999987543


Q ss_pred             ccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc------CCCH-
Q psy2684         245 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF------NLPY-  317 (356)
Q Consensus       245 ~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~------~~~~-  317 (356)
                      ..                                   ...++.+||++|+.  .+++..|+.|++....      ..+. 
T Consensus       947 ~~-----------------------------------~~~~~~igyv~Q~d--~~~~~lTV~E~L~~~a~lr~~~~~~~~  989 (1470)
T PLN03140        947 KQ-----------------------------------ETFARISGYCEQND--IHSPQVTVRESLIYSAFLRLPKEVSKE  989 (1470)
T ss_pred             Ch-----------------------------------HHhhhheEEEcccc--ccCCCCcHHHHHHHHHHhCCCCCCCHH
Confidence            10                                   00124589999985  4678899999875321      1222 


Q ss_pred             ---HHHHHHHhhcCCCCccccCCC-----CCCChHHHHHHHHHHHcC
Q psy2684         318 ---EKSRRQLGMFGLPSYAHTIPI-----RDLSGGQKARVALAELTL  356 (356)
Q Consensus       318 ---~~~~~~L~~~~l~~~~~~~~~-----~~LSGGqkqRvalA~~~l  356 (356)
                         ..+.++++.+++.+..+. .+     ..|||||||||+||++|+
T Consensus       990 ~~~~~v~~vl~~lgL~~~~~~-~vg~~~~~~LSgGerkRvsIa~aL~ 1035 (1470)
T PLN03140        990 EKMMFVDEVMELVELDNLKDA-IVGLPGVTGLSTEQRKRLTIAVELV 1035 (1470)
T ss_pred             HHHHHHHHHHHHCCChhHhCC-ccCCCCCCCcCHHHHHHHHHHHHHh
Confidence               236678999999876544 33     589999999999999874

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.96  E-value=1.8e-29  Score=221.06  Aligned_cols=145  Identities=30%  Similarity=0.451  Sum_probs=120.5

Q ss_pred             CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684         177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG  256 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG  256 (356)
                      .+++++++++++| |+-.+++||||+|++||+++|||||||||||++|+|+|+++|++|+|.++|.++.-.+        
T Consensus         2 ~~lL~v~~l~k~F-GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~--------   72 (250)
T COG0411           2 TPLLEVRGLSKRF-GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLP--------   72 (250)
T ss_pred             Cceeeeccceeec-CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCC--------
Confidence            3578999999999 7888999999999999999999999999999999999999999999999998875211        


Q ss_pred             CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC----------C---------CH
Q psy2684         257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN----------L---------PY  317 (356)
Q Consensus       257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~----------~---------~~  317 (356)
                                        |.     ...+..++.-||++  .+|+++|+.|+++-...          .         ..
T Consensus        73 ------------------p~-----~iar~Gi~RTFQ~~--rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~  127 (250)
T COG0411          73 ------------------PH-----RIARLGIARTFQIT--RLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREAR  127 (250)
T ss_pred             ------------------HH-----HHHhccceeecccc--cccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHH
Confidence                              11     01134577889987  58999999999864210          0         12


Q ss_pred             HHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         318 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       318 ~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +++.++|+++||.+..+. ++++||+|||+|+.||++|+
T Consensus       128 e~A~~~Le~vgL~~~a~~-~A~~LsyG~qR~LEIArALa  165 (250)
T COG0411         128 ERARELLEFVGLGELADR-PAGNLSYGQQRRLEIARALA  165 (250)
T ss_pred             HHHHHHHHHcCCchhhcc-hhhcCChhHhHHHHHHHHHh
Confidence            457789999999998775 88999999999999999974

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.96  E-value=1.3e-29  Score=214.88  Aligned_cols=144  Identities=26%  Similarity=0.429  Sum_probs=120.5

Q ss_pred             CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      ..+.++|+.++| +.+.+++++||+|++||+++++|||||||||.++++.|+.+|++|+|.+++.+++..+         
T Consensus         3 ~~L~a~~l~K~y-~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lP---------   72 (243)
T COG1137           3 STLVAENLAKSY-KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLP---------   72 (243)
T ss_pred             cEEEehhhhHhh-CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCC---------
Confidence            458899999999 6788999999999999999999999999999999999999999999999999885211         


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCC-----C--H--HHHHHHHhhcC
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNL-----P--Y--EKSRRQLGMFG  328 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~-----~--~--~~~~~~L~~~~  328 (356)
                                            +....+..+||++|++.  .|-.+|+.++++.....     .  .  .+..++|+.|.
T Consensus        73 ----------------------m~~RArlGigYLpQE~S--IFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~  128 (243)
T COG1137          73 ----------------------MHKRARLGIGYLPQEAS--IFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFH  128 (243)
T ss_pred             ----------------------hHHHhhcCcccccccch--HhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhc
Confidence                                  12223457999999974  88999999998654221     1  1  23457899999


Q ss_pred             CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         329 LPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       329 l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +.+..+. +..+||||||+|+.|||+|.
T Consensus       129 i~hlr~~-~a~sLSGGERRR~EIARaLa  155 (243)
T COG1137         129 ITHLRDS-KAYSLSGGERRRVEIARALA  155 (243)
T ss_pred             hHHHhcC-cccccccchHHHHHHHHHHh
Confidence            9998765 78999999999999999973

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=1.8e-28  Score=234.09  Aligned_cols=141  Identities=25%  Similarity=0.369  Sum_probs=117.1

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      +++++|+++.|+++..+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...           
T Consensus         3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~-----------   71 (356)
T PRK11650          3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNEL-----------   71 (356)
T ss_pred             EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCC-----------
Confidence            589999999994456799999999999999999999999999999999999999999999998775310           


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCCH----HHHHHHHhhcCCCC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLPY----EKSRRQLGMFGLPS  331 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~~----~~~~~~L~~~~l~~  331 (356)
                                     .+        .++++||+||++  .+|+.+|+.+++....   +.+.    ..+.++++.+|+.+
T Consensus        72 ---------------~~--------~~r~ig~v~Q~~--~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~  126 (356)
T PRK11650         72 ---------------EP--------ADRDIAMVFQNY--ALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEP  126 (356)
T ss_pred             ---------------CH--------HHCCEEEEeCCc--cccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChh
Confidence                           00        124799999997  5899999999986432   2222    34678899999988


Q ss_pred             ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         332 YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       332 ~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ..++ ++.+|||||||||+|||+++
T Consensus       127 ~~~~-~~~~LSgGq~QRvalARAL~  150 (356)
T PRK11650        127 LLDR-KPRELSGGQRQRVAMGRAIV  150 (356)
T ss_pred             HhhC-ChhhCCHHHHHHHHHHHHHh
Confidence            7665 67999999999999999974

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.95  E-value=1.1e-28  Score=220.96  Aligned_cols=145  Identities=36%  Similarity=0.562  Sum_probs=116.9

Q ss_pred             CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      +++.++++++.|+++..+++++||+|.+|++++|+|+||||||||+++++|+++|++|.|.++|.++..           
T Consensus         2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~-----------   70 (235)
T COG1122           2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSS-----------   70 (235)
T ss_pred             ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccc-----------
Confidence            468899999999655689999999999999999999999999999999999999999999999876531           


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHH---hcCCCHH----HHHHHHhhcCCC
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK---LFNLPYE----KSRRQLGMFGLP  330 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~---~~~~~~~----~~~~~L~~~~l~  330 (356)
                         .|+                 ....+.++||+||+|+.+++.. |+.+.+..   ..+.+.+    ++.++|..+|+.
T Consensus        71 ---~~~-----------------~~~~~~~vG~VfQnpd~q~~~~-tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~  129 (235)
T COG1122          71 ---EKS-----------------LLELRQKVGLVFQNPDDQLFGP-TVEDEVAFGLENLGLPREEIEERVAEALELVGLE  129 (235)
T ss_pred             ---hhh-----------------HHHhhcceEEEEECcccccccC-cHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCch
Confidence               000                 1122567999999998877755 55554432   2344443    466789999999


Q ss_pred             CccccCCCCCCChHHHHHHHHHHHc
Q psy2684         331 SYAHTIPIRDLSGGQKARVALAELT  355 (356)
Q Consensus       331 ~~~~~~~~~~LSGGqkqRvalA~~~  355 (356)
                      +..+ ++++.||||||||||||.++
T Consensus       130 ~~~~-r~p~~LSGGqkqRvaIA~vL  153 (235)
T COG1122         130 ELLD-RPPFNLSGGQKQRVAIAGVL  153 (235)
T ss_pred             hhcc-CCccccCCcceeeHHhhHHH
Confidence            8865 47899999999999999986

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=2.4e-28  Score=232.54  Aligned_cols=142  Identities=25%  Similarity=0.441  Sum_probs=118.5

Q ss_pred             CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684         177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG  256 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG  256 (356)
                      .++++++|+++.| ++..+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...         
T Consensus         4 ~~~l~~~~l~~~~-~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~---------   73 (351)
T PRK11432          4 KNFVVLKNITKRF-GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHR---------   73 (351)
T ss_pred             CcEEEEEeEEEEE-CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCC---------
Confidence            3579999999999 566799999999999999999999999999999999999999999999998765310         


Q ss_pred             CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCC----HHHHHHHHhhcCC
Q psy2684         257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLP----YEKSRRQLGMFGL  329 (356)
Q Consensus       257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~----~~~~~~~L~~~~l  329 (356)
                                       .        ..++++||+||++  .+|+.+|+.+++....   +.+    .+.+.++++.+++
T Consensus        74 -----------------~--------~~~r~ig~vfQ~~--~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl  126 (351)
T PRK11432         74 -----------------S--------IQQRDICMVFQSY--ALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDL  126 (351)
T ss_pred             -----------------C--------HHHCCEEEEeCCc--ccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCC
Confidence                             0        0135799999997  5899999999986432   222    2456788999999


Q ss_pred             CCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         330 PSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       330 ~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .+..++ ++.+|||||||||+|||+|+
T Consensus       127 ~~~~~r-~~~~LSgGq~QRVaLARaL~  152 (351)
T PRK11432        127 AGFEDR-YVDQISGGQQQRVALARALI  152 (351)
T ss_pred             chhhcC-ChhhCCHHHHHHHHHHHHHH
Confidence            887665 67999999999999999974

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.95  E-value=2.4e-28  Score=234.18  Aligned_cols=143  Identities=27%  Similarity=0.461  Sum_probs=118.6

Q ss_pred             CCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684         176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV  255 (356)
Q Consensus       176 ~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv  255 (356)
                      ..++++++|+++.| ++..+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++..         
T Consensus        11 ~~~~L~l~~l~~~~-~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~---------   80 (375)
T PRK09452         11 LSPLVELRGISKSF-DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITH---------   80 (375)
T ss_pred             CCceEEEEEEEEEE-CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCC---------
Confidence            35679999999999 56679999999999999999999999999999999999999999999999876520         


Q ss_pred             cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCCH----HHHHHHHhhcC
Q psy2684         256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLPY----EKSRRQLGMFG  328 (356)
Q Consensus       256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~~----~~~~~~L~~~~  328 (356)
                                       ..+        .++++||+||++  .+|+.+|+.+++....   +.+.    ..+.++++.++
T Consensus        81 -----------------~~~--------~~r~ig~vfQ~~--~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~  133 (375)
T PRK09452         81 -----------------VPA--------ENRHVNTVFQSY--ALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQ  133 (375)
T ss_pred             -----------------CCH--------HHCCEEEEecCc--ccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcC
Confidence                             000        124699999997  5899999999986432   2222    34677899999


Q ss_pred             CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         329 LPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       329 l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +.+..++ ++.+|||||||||+|||+++
T Consensus       134 l~~~~~~-~p~~LSgGq~QRVaLARaL~  160 (375)
T PRK09452        134 LEEFAQR-KPHQLSGGQQQRVAIARAVV  160 (375)
T ss_pred             CchhhhC-ChhhCCHHHHHHHHHHHHHh
Confidence            9887765 66999999999999999974

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.95  E-value=1.2e-28  Score=204.11  Aligned_cols=146  Identities=28%  Similarity=0.319  Sum_probs=118.4

Q ss_pred             cEEEecceeeeCCC---ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684         179 VLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV  255 (356)
Q Consensus       179 ~l~~~~l~~~~~~~---~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv  255 (356)
                      +++++++++..+.+   ..+|++|+|.|.+||.++||||||||||||+-+++|+..|++|+|.+.|+++.....+     
T Consensus         6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd-----   80 (228)
T COG4181           6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDED-----   80 (228)
T ss_pred             eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHH-----
Confidence            68899998877432   3699999999999999999999999999999999999999999999998876421111     


Q ss_pred             cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---C----CCHHHHHHHHhhcC
Q psy2684         256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---N----LPYEKSRRQLGMFG  328 (356)
Q Consensus       256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~----~~~~~~~~~L~~~~  328 (356)
                                             ....-+..++|+|||.+  ++.|++|..|+++...   +    .....++++|+.+|
T Consensus        81 -----------------------~rA~~R~~~vGfVFQSF--~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vG  135 (228)
T COG4181          81 -----------------------ARAALRARHVGFVFQSF--HLIPNLTALENVALPLELRGESSADSRAGAKALLEAVG  135 (228)
T ss_pred             -----------------------HHHHhhccceeEEEEee--eccccchhhhhccchhhhcCCccccHHHHHHHHHHHhC
Confidence                                   11111346899999986  5899999999986432   2    12355889999999


Q ss_pred             CCCccccCCCCCCChHHHHHHHHHHHc
Q psy2684         329 LPSYAHTIPIRDLSGGQKARVALAELT  355 (356)
Q Consensus       329 l~~~~~~~~~~~LSGGqkqRvalA~~~  355 (356)
                      +......+ |.+|||||||||||||++
T Consensus       136 Lg~Rl~Hy-P~qLSGGEQQRVAiARAf  161 (228)
T COG4181         136 LGKRLTHY-PAQLSGGEQQRVALARAF  161 (228)
T ss_pred             cccccccC-ccccCchHHHHHHHHHHh
Confidence            99888764 599999999999999986

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.95  E-value=2.8e-28  Score=232.43  Aligned_cols=141  Identities=26%  Similarity=0.404  Sum_probs=117.8

Q ss_pred             CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      ++++++|+++.| ++..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...          
T Consensus         3 ~~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~----------   71 (353)
T TIGR03265         3 PYLSIDNIRKRF-GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRL----------   71 (353)
T ss_pred             cEEEEEEEEEEe-CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCC----------
Confidence            468999999999 556799999999999999999999999999999999999999999999998765310          


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCC----HHHHHHHHhhcCCC
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLP----YEKSRRQLGMFGLP  330 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~----~~~~~~~L~~~~l~  330 (356)
                                      .+        .++++||+||++  .+|+.+|+.+++....   +.+    ...+.++++.+++.
T Consensus        72 ----------------~~--------~~r~ig~v~Q~~--~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~  125 (353)
T TIGR03265        72 ----------------PP--------QKRDYGIVFQSY--ALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLP  125 (353)
T ss_pred             ----------------CH--------HHCCEEEEeCCc--ccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC
Confidence                            00        124699999997  5899999999986432   222    24577899999998


Q ss_pred             CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         331 SYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       331 ~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +..++ ++.+|||||||||+|||+|+
T Consensus       126 ~~~~~-~~~~LSgGq~QRvaLARaL~  150 (353)
T TIGR03265       126 GSERK-YPGQLSGGQQQRVALARALA  150 (353)
T ss_pred             chhhC-ChhhCCHHHHHHHHHHHHHh
Confidence            87765 67999999999999999974

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.95  E-value=4.6e-28  Score=229.60  Aligned_cols=146  Identities=26%  Similarity=0.338  Sum_probs=116.3

Q ss_pred             cEEEecceeeeCC---CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684         179 VLGLHDVTFGYPG---GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV  255 (356)
Q Consensus       179 ~l~~~~l~~~~~~---~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv  255 (356)
                      |++++|+++.|++   ...+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++....       
T Consensus         1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~-------   73 (343)
T TIGR02314         1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLS-------   73 (343)
T ss_pred             CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCC-------
Confidence            5789999999952   236999999999999999999999999999999999999999999999998763100       


Q ss_pred             cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCCH----HHHHHHHhhcC
Q psy2684         256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLPY----EKSRRQLGMFG  328 (356)
Q Consensus       256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~~----~~~~~~L~~~~  328 (356)
                                         +  ... ...+.+|||+||++  .+++..|+.+++....   +.+.    +.+.++|+.+|
T Consensus        74 -------------------~--~~l-~~~r~~Ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vg  129 (343)
T TIGR02314        74 -------------------N--SEL-TKARRQIGMIFQHF--NLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVG  129 (343)
T ss_pred             -------------------H--HHH-HHHhcCEEEEECCc--cccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence                               0  000 01135799999997  4788899999886432   2332    34668899999


Q ss_pred             CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         329 LPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       329 l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +.+..+. ++.+|||||||||+|||+|+
T Consensus       130 L~~~~~~-~~~~LSgGqkQRV~IARAL~  156 (343)
T TIGR02314       130 LGDKHDS-YPSNLSGGQKQRVAIARALA  156 (343)
T ss_pred             CchhhhC-ChhhCCHHHHHHHHHHHHHH
Confidence            9876665 67999999999999999974

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.95  E-value=4.2e-28  Score=216.74  Aligned_cols=146  Identities=32%  Similarity=0.473  Sum_probs=114.4

Q ss_pred             cEEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         179 VLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       179 ~l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      +++++|+++.|+++ +.+++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++....         
T Consensus         1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~---------   71 (216)
T TIGR00960         1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLR---------   71 (216)
T ss_pred             CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcC---------
Confidence            47899999999543 46999999999999999999999999999999999999999999999987652100         


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCCC
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLP  330 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l~  330 (356)
                                       +  ... ...+..++|++|++  .+++..|+.+++...   .+..    ...+.++++.+|+.
T Consensus        72 -----------------~--~~~-~~~~~~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~  129 (216)
T TIGR00960        72 -----------------G--REI-PFLRRHIGMVFQDH--RLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLE  129 (216)
T ss_pred             -----------------h--hHH-HHHHHhceEEecCc--cccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh
Confidence                             0  000 00124699999986  477788999987532   1222    24567889999998


Q ss_pred             CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         331 SYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       331 ~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +..+. ++.+|||||||||+||++++
T Consensus       130 ~~~~~-~~~~LSgG~~qrv~laral~  154 (216)
T TIGR00960       130 GKAHA-LPMQLSGGEQQRVAIARAIV  154 (216)
T ss_pred             hhhhC-ChhhCCHHHHHHHHHHHHHh
Confidence            76654 67999999999999999974

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.95  E-value=4.5e-28  Score=210.77  Aligned_cols=145  Identities=24%  Similarity=0.368  Sum_probs=115.2

Q ss_pred             CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      ++++++|++..| +...+|+++||++.+||+++|+|+||+|||||+++|+|+.+|.+|+|.|+|.|+...+-        
T Consensus         2 ~mL~v~~l~~~Y-G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~--------   72 (237)
T COG0410           2 PMLEVENLSAGY-GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPP--------   72 (237)
T ss_pred             CceeEEeEeecc-cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCH--------
Confidence            579999999999 66789999999999999999999999999999999999999999999999999852211        


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-cCCC-----HHHHHHHHhhcCCCC
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-FNLP-----YEKSRRQLGMFGLPS  331 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-~~~~-----~~~~~~~L~~~~l~~  331 (356)
                                             ....+..++|+||-.  .+|+.+|+.||+... +...     ....+++.+.|---.
T Consensus        73 -----------------------~~r~r~Gi~~VPegR--~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lk  127 (237)
T COG0410          73 -----------------------HERARLGIAYVPEGR--RIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLK  127 (237)
T ss_pred             -----------------------HHHHhCCeEeCcccc--cchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHH
Confidence                                   111245699999975  599999999998642 1111     111445666665333


Q ss_pred             ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         332 YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       332 ~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ...+++.++|||||||-+||||+|+
T Consensus       128 er~~~~aG~LSGGEQQMLAiaRALm  152 (237)
T COG0410         128 ERRNQRAGTLSGGEQQMLAIARALM  152 (237)
T ss_pred             HHhcCcccCCChHHHHHHHHHHHHh
Confidence            3445678999999999999999974

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.95  E-value=1.1e-27  Score=224.79  Aligned_cols=143  Identities=29%  Similarity=0.425  Sum_probs=117.2

Q ss_pred             CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684         177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG  256 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG  256 (356)
                      .++++++|+++.| ++..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...         
T Consensus         5 ~~~i~i~~l~k~~-~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~---------   74 (306)
T PRK13537          5 VAPIDFRNVEKRY-GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSR---------   74 (306)
T ss_pred             CceEEEEeEEEEE-CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccc---------
Confidence            4579999999999 567799999999999999999999999999999999999999999999998775310         


Q ss_pred             CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcCC
Q psy2684         257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGL  329 (356)
Q Consensus       257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~l  329 (356)
                                              ....+.++||++|++  .+++..|+.|++...   .+.+.    ..+.++++.+++
T Consensus        75 ------------------------~~~~~~~ig~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l  128 (306)
T PRK13537         75 ------------------------ARHARQRVGVVPQFD--NLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKL  128 (306)
T ss_pred             ------------------------hHHHHhcEEEEeccC--cCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence                                    001235799999996  477889999987532   23332    345678999999


Q ss_pred             CCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         330 PSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       330 ~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ..... +++..|||||||||+||++++
T Consensus       129 ~~~~~-~~~~~LS~G~~qrl~la~aL~  154 (306)
T PRK13537        129 ENKAD-AKVGELSGGMKRRLTLARALV  154 (306)
T ss_pred             chHhc-CchhhCCHHHHHHHHHHHHHh
Confidence            87655 478999999999999999974

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.95  E-value=1.3e-27  Score=222.45  Aligned_cols=142  Identities=35%  Similarity=0.542  Sum_probs=118.7

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      +++++|+++.|++++.+|+++||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.+....           
T Consensus         4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-----------   72 (293)
T COG1131           4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-----------   72 (293)
T ss_pred             eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-----------
Confidence            578899999993257899999999999999999999999999999999999999999999998765310           


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCCCC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPS  331 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l~~  331 (356)
                                            ....+.++||++|++.  +++.+|+.|++...   ++.+    .+.+.++++.||+..
T Consensus        73 ----------------------~~~~~~~igy~~~~~~--~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~  128 (293)
T COG1131          73 ----------------------PAKVRRRIGYVPQEPS--LYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLED  128 (293)
T ss_pred             ----------------------HHHHHhheEEEccCCC--CCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCch
Confidence                                  0112457999999974  89999999987542   3333    456889999999998


Q ss_pred             ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         332 YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       332 ~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .. ++++..||+||||||+||.+|+
T Consensus       129 ~~-~~~~~~lS~G~kqrl~ia~aL~  152 (293)
T COG1131         129 KA-NKKVRTLSGGMKQRLSIALALL  152 (293)
T ss_pred             hh-CcchhhcCHHHHHHHHHHHHHh
Confidence            54 4578999999999999999974

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.95  E-value=3.6e-28  Score=203.13  Aligned_cols=137  Identities=34%  Similarity=0.504  Sum_probs=111.3

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG  259 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG  259 (356)
                      +.++++.+.| +.  .--.++++|+.||+++|+||||||||||+++++|+..|.+|.|.++|++..-.            
T Consensus         2 l~L~~V~~~y-~~--~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~------------   66 (231)
T COG3840           2 LALDDVRFSY-GH--LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTAS------------   66 (231)
T ss_pred             ccccceEEee-Cc--ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcC------------
Confidence            5678899999 33  33567889999999999999999999999999999999999999999875311            


Q ss_pred             CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc--C--C---CHHHHHHHHhhcCCCCc
Q psy2684         260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF--N--L---PYEKSRRQLGMFGLPSY  332 (356)
Q Consensus       260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~--~--~---~~~~~~~~L~~~~l~~~  332 (356)
                                    .|        ..+-++++||+.  ++|..+|+.+++....  +  +   ..+.+...+.++|+.+.
T Consensus        67 --------------~P--------~~RPVSmlFQEn--NLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~  122 (231)
T COG3840          67 --------------PP--------AERPVSMLFQEN--NLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGF  122 (231)
T ss_pred             --------------Cc--------ccCChhhhhhcc--ccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhH
Confidence                          11        124589999986  5999999999985321  1  2   23557788999999998


Q ss_pred             cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         333 AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       333 ~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ..+ .|.+|||||||||||||+++
T Consensus       123 ~~R-LP~~LSGGqRQRvALARclv  145 (231)
T COG3840         123 LKR-LPGELSGGQRQRVALARCLV  145 (231)
T ss_pred             hhh-CccccCchHHHHHHHHHHHh
Confidence            876 55999999999999999974

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=1.6e-27  Score=228.92  Aligned_cols=142  Identities=29%  Similarity=0.450  Sum_probs=118.2

Q ss_pred             CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684         177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG  256 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG  256 (356)
                      .++++++|+++.| ++..+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...         
T Consensus        17 ~~~l~l~~v~~~~-~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~---------   86 (377)
T PRK11607         17 TPLLEIRNLTKSF-DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHV---------   86 (377)
T ss_pred             CceEEEEeEEEEE-CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCC---------
Confidence            5679999999999 556799999999999999999999999999999999999999999999998765200         


Q ss_pred             CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCCH----HHHHHHHhhcCC
Q psy2684         257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLPY----EKSRRQLGMFGL  329 (356)
Q Consensus       257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~~----~~~~~~L~~~~l  329 (356)
                                       .        ..++.+||+||++  .+|+.+|+.|++....   +.+.    .++.++++.+++
T Consensus        87 -----------------~--------~~~r~ig~vfQ~~--~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L  139 (377)
T PRK11607         87 -----------------P--------PYQRPINMMFQSY--ALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHM  139 (377)
T ss_pred             -----------------C--------HHHCCEEEEeCCC--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence                             0        1134799999997  4899999999986432   2222    346678999999


Q ss_pred             CCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         330 PSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       330 ~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .+..+. ++.+|||||||||+|||+++
T Consensus       140 ~~~~~~-~~~~LSgGq~QRVaLARAL~  165 (377)
T PRK11607        140 QEFAKR-KPHQLSGGQRQRVALARSLA  165 (377)
T ss_pred             chhhcC-ChhhCCHHHHHHHHHHHHHh
Confidence            887665 66999999999999999974

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.95  E-value=1.4e-27  Score=212.91  Aligned_cols=139  Identities=31%  Similarity=0.449  Sum_probs=112.4

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG  259 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG  259 (356)
                      ++++|+++.| +++.+++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...            
T Consensus         1 l~~~~l~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~------------   67 (213)
T cd03259           1 LELKGLSKTY-GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGV------------   67 (213)
T ss_pred             CeeeeeEEEe-CCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcC------------
Confidence            4689999999 456799999999999999999999999999999999999999999999998765210            


Q ss_pred             CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCCCCc
Q psy2684         260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSY  332 (356)
Q Consensus       260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l~~~  332 (356)
                                           . ..+..++|++|++.  +++..|+.+++...   .+..    ...+.++++.+++.+.
T Consensus        68 ---------------------~-~~~~~i~~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~  123 (213)
T cd03259          68 ---------------------P-PERRNIGMVFQDYA--LFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGL  123 (213)
T ss_pred             ---------------------c-hhhccEEEEcCchh--hccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhh
Confidence                                 0 01246999999873  67788999887532   1222    2346778999999876


Q ss_pred             cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         333 AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       333 ~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ... ++.+|||||||||+||++++
T Consensus       124 ~~~-~~~~LSgG~~qrl~la~al~  146 (213)
T cd03259         124 LNR-YPHELSGGQQQRVALARALA  146 (213)
T ss_pred             hhc-ChhhCCHHHHHHHHHHHHHh
Confidence            554 67999999999999999974

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.95  E-value=1.6e-27  Score=215.81  Aligned_cols=144  Identities=32%  Similarity=0.434  Sum_probs=113.0

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG  259 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG  259 (356)
                      ++++|+++.| ++..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....           
T Consensus         1 l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~-----------   68 (235)
T cd03261           1 IELRGLTKSF-GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLS-----------   68 (235)
T ss_pred             CeEEEEEEEE-CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccC-----------
Confidence            4689999999 5567999999999999999999999999999999999999999999999987652100           


Q ss_pred             CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---c-CCCH----HHHHHHHhhcCCCC
Q psy2684         260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---F-NLPY----EKSRRQLGMFGLPS  331 (356)
Q Consensus       260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~-~~~~----~~~~~~L~~~~l~~  331 (356)
                                     +  .. ....+..++|++|++  .+++..|+.+++...   . ..+.    ..+.++++.+++..
T Consensus        69 ---------------~--~~-~~~~~~~i~~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  128 (235)
T cd03261          69 ---------------E--AE-LYRLRRRMGMLFQSG--ALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRG  128 (235)
T ss_pred             ---------------h--hh-HHHHhcceEEEccCc--ccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCch
Confidence                           0  00 001134699999986  477788999987532   1 1222    34567899999987


Q ss_pred             ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         332 YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       332 ~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ... +++.+|||||||||+||++++
T Consensus       129 ~~~-~~~~~LSgG~~qrv~ia~al~  152 (235)
T cd03261         129 AED-LYPAELSGGMKKRVALARALA  152 (235)
T ss_pred             hhc-CChhhCCHHHHHHHHHHHHHh
Confidence            664 467999999999999999974

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.95  E-value=1.7e-27  Score=227.14  Aligned_cols=140  Identities=26%  Similarity=0.351  Sum_probs=115.9

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      +++++|+++.| ++..+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...           
T Consensus         2 ~L~i~~l~~~~-~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~-----------   69 (353)
T PRK10851          2 SIEIANIKKSF-GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRL-----------   69 (353)
T ss_pred             EEEEEEEEEEe-CCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----------
Confidence            37899999999 556799999999999999999999999999999999999999999999998765210           


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-------CCC----HHHHHHHHhhc
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-------NLP----YEKSRRQLGMF  327 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-------~~~----~~~~~~~L~~~  327 (356)
                                     .        ..++++||+||++  .+++.+|+.+++....       ..+    .+.+.++|+.+
T Consensus        70 ---------------~--------~~~r~i~~v~Q~~--~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  124 (353)
T PRK10851         70 ---------------H--------ARDRKVGFVFQHY--ALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMV  124 (353)
T ss_pred             ---------------C--------HHHCCEEEEecCc--ccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHc
Confidence                           0        0124699999996  5889999999986431       112    23567789999


Q ss_pred             CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         328 GLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       328 ~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ++.+..++ ++.+|||||||||+|||+|+
T Consensus       125 ~L~~~~~~-~~~~LSgGq~QRvalArAL~  152 (353)
T PRK10851        125 QLAHLADR-YPAQLSGGQKQRVALARALA  152 (353)
T ss_pred             CCchhhhC-ChhhCCHHHHHHHHHHHHHh
Confidence            99876665 67999999999999999974

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.94  E-value=5.5e-28  Score=207.02  Aligned_cols=145  Identities=27%  Similarity=0.299  Sum_probs=110.4

Q ss_pred             CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCC-----CceeEeeeccccCcCCe
Q psy2684         177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK-----GKVLLEKVNFGLDMESR  251 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~-----G~i~~~g~~~~~~~~~~  251 (356)
                      .+.++++|+++.| +.+.+|++||++|+++.++|++|||||||||||+++..+.....     |+|.++|.++....   
T Consensus         5 ~~~~~~~~l~~yY-g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~---   80 (253)
T COG1117           5 IPAIEVRDLNLYY-GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPK---   80 (253)
T ss_pred             cceeEecceeEEE-CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCC---
Confidence            3568999999999 78889999999999999999999999999999999999988766     89999988874110   


Q ss_pred             eeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHH
Q psy2684         252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQL  324 (356)
Q Consensus       252 ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L  324 (356)
                                                 .-....|+++|+|||.|+  .|| +++.|++...   .+...    +.++..|
T Consensus        81 ---------------------------~d~~~lRr~vGMVFQkPn--PFp-~SIydNVayG~r~~g~~~~~ldeiVe~sL  130 (253)
T COG1117          81 ---------------------------VDVVELRRRVGMVFQKPN--PFP-MSIYDNVAYGLRLHGIKDKELDEIVESSL  130 (253)
T ss_pred             ---------------------------CCHHHHHHHheeeccCCC--CCC-chHHHHHHHhHHhhccchHHHHHHHHHHH
Confidence                                       001122568999999985  566 8999998643   33332    2244455


Q ss_pred             hhcCCC---CccccCCCCCCChHHHHHHHHHHHc
Q psy2684         325 GMFGLP---SYAHTIPIRDLSGGQKARVALAELT  355 (356)
Q Consensus       325 ~~~~l~---~~~~~~~~~~LSGGqkqRvalA~~~  355 (356)
                      ....|=   .+..++++..||||||||++|||++
T Consensus       131 k~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARal  164 (253)
T COG1117         131 KKAALWDEVKDRLHKSALGLSGGQQQRLCIARAL  164 (253)
T ss_pred             HHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHH
Confidence            555441   2222346788999999999999986

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=1.5e-27  Score=215.71  Aligned_cols=149  Identities=28%  Similarity=0.376  Sum_probs=115.7

Q ss_pred             CCcEEEecceeeeCCC---ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeee
Q psy2684         177 PPVLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVA  253 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~~---~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ia  253 (356)
                      +++++++|+++.|+++   .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....     
T Consensus         3 ~~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~-----   77 (233)
T PRK11629          3 KILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLS-----   77 (233)
T ss_pred             CceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC-----
Confidence            4579999999999532   46999999999999999999999999999999999999999999999987653100     


Q ss_pred             eecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhh
Q psy2684         254 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGM  326 (356)
Q Consensus       254 lvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~  326 (356)
                                             ........+..++|++|++  .+++..|+.+++...   .+..    ...+.++++.
T Consensus        78 -----------------------~~~~~~~~~~~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~  132 (233)
T PRK11629         78 -----------------------SAAKAELRNQKLGFIYQFH--HLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAA  132 (233)
T ss_pred             -----------------------HHHHHHHHhccEEEEecCc--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence                                   0000000124699999986  477788999987532   1222    2346788999


Q ss_pred             cCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         327 FGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       327 ~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +|+.+.... ++.+|||||||||+||++++
T Consensus       133 ~gl~~~~~~-~~~~LSgG~~qrl~la~al~  161 (233)
T PRK11629        133 VGLEHRANH-RPSELSGGERQRVAIARALV  161 (233)
T ss_pred             cCCchhhhC-ChhhCCHHHHHHHHHHHHHh
Confidence            999876654 67999999999999999874

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.94  E-value=2.3e-27  Score=226.54  Aligned_cols=139  Identities=22%  Similarity=0.378  Sum_probs=115.8

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCC--CceeEeeeccccCcCCeeeeecC
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK--GKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~--G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      ++++|+++.| ++..+|+++||+|.+||+++|+||||||||||+++|+|+++|++  |+|.++|.++...          
T Consensus         6 l~~~~l~~~~-~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~----------   74 (362)
T TIGR03258         6 IRIDHLRVAY-GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHA----------   74 (362)
T ss_pred             EEEEEEEEEE-CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCC----------
Confidence            7899999999 55679999999999999999999999999999999999999999  9999998765200          


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcCCC
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLP  330 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~l~  330 (356)
                                      .        ..++++||+||++  .+|+.+|+.+++...   .+.+.    ..+.++++.+++.
T Consensus        75 ----------------~--------~~~r~ig~vfQ~~--~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~  128 (362)
T TIGR03258        75 ----------------P--------PHKRGLALLFQNY--ALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLG  128 (362)
T ss_pred             ----------------C--------HHHCCEEEEECCc--ccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence                            0        0124699999997  488999999998643   22332    3467789999998


Q ss_pred             CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         331 SYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       331 ~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +..++ ++.+|||||||||+|||+|+
T Consensus       129 ~~~~~-~~~~LSgGq~QRvaLARAL~  153 (362)
T TIGR03258       129 DAAAH-LPAQLSGGMQQRIAIARAIA  153 (362)
T ss_pred             chhhC-ChhhCCHHHHHHHHHHHHHh
Confidence            87665 67999999999999999974

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.94  E-value=3e-27  Score=226.99  Aligned_cols=140  Identities=24%  Similarity=0.378  Sum_probs=115.4

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      .++++|+++.| ++..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...           
T Consensus         3 ~l~i~~l~~~~-~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~-----------   70 (369)
T PRK11000          3 SVTLRNVTKAY-GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDV-----------   70 (369)
T ss_pred             EEEEEEEEEEe-CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCC-----------
Confidence            48999999999 566799999999999999999999999999999999999999999999998765200           


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCCH----HHHHHHHhhcCCCC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLPY----EKSRRQLGMFGLPS  331 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~~----~~~~~~L~~~~l~~  331 (356)
                                     .+        .+.++||++|++  .+++.+|+.+++....   +.+.    ..+.++++.+|+.+
T Consensus        71 ---------------~~--------~~~~i~~v~Q~~--~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~  125 (369)
T PRK11000         71 ---------------PP--------AERGVGMVFQSY--ALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAH  125 (369)
T ss_pred             ---------------CH--------hHCCEEEEeCCc--ccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChh
Confidence                           00        124699999986  4888999999885422   2222    34677899999987


Q ss_pred             ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         332 YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       332 ~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ..+. ++.+|||||||||+|||+|+
T Consensus       126 ~~~~-~~~~LSgGq~QRvaLAraL~  149 (369)
T PRK11000        126 LLDR-KPKALSGGQRQRVAIGRTLV  149 (369)
T ss_pred             hhcC-ChhhCCHHHHHHHHHHHHHh
Confidence            6654 67999999999999999974

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.94  E-value=3.9e-27  Score=215.62  Aligned_cols=139  Identities=30%  Similarity=0.366  Sum_probs=114.7

Q ss_pred             CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684         177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG  256 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG  256 (356)
                      .++++++|+++.| +++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++.           
T Consensus        10 ~~~l~i~~l~~~~-~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----------   77 (257)
T PRK11247         10 GTPLLLNAVSKRY-GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----------   77 (257)
T ss_pred             CCcEEEEEEEEEE-CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----------
Confidence            4679999999999 5567999999999999999999999999999999999999999999998764321           


Q ss_pred             CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHhhcCCCCcccc
Q psy2684         257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYAHT  335 (356)
Q Consensus       257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~L~~~~l~~~~~~  335 (356)
                                                ..+..++|++|++  .+++..|+.+++.... ......+.++++.+|+.+....
T Consensus        78 --------------------------~~~~~i~~v~q~~--~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~  129 (257)
T PRK11247         78 --------------------------EAREDTRLMFQDA--RLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANE  129 (257)
T ss_pred             --------------------------HhhCceEEEecCc--cCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcC
Confidence                                      0124689999986  4677789999875422 1223567789999999876654


Q ss_pred             CCCCCCChHHHHHHHHHHHcC
Q psy2684         336 IPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       336 ~~~~~LSGGqkqRvalA~~~l  356 (356)
                       ++.+|||||||||+||++++
T Consensus       130 -~~~~LSgGqkqrl~laraL~  149 (257)
T PRK11247        130 -WPAALSGGQKQRVALARALI  149 (257)
T ss_pred             -ChhhCCHHHHHHHHHHHHHh
Confidence             67999999999999999974

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.94  E-value=3.2e-27  Score=224.08  Aligned_cols=144  Identities=30%  Similarity=0.424  Sum_probs=117.3

Q ss_pred             CCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684         176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV  255 (356)
Q Consensus       176 ~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv  255 (356)
                      +.++++++|+++.| ++..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...        
T Consensus        38 ~~~~i~i~nl~k~y-~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~--------  108 (340)
T PRK13536         38 STVAIDLAGVSKSY-GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPAR--------  108 (340)
T ss_pred             CceeEEEEEEEEEE-CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcc--------
Confidence            45689999999999 566799999999999999999999999999999999999999999999998765210        


Q ss_pred             cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcC
Q psy2684         256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFG  328 (356)
Q Consensus       256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~  328 (356)
                                               ....+..+||++|++  .+++..|+.+++...   ++...    ..+.++++.++
T Consensus       109 -------------------------~~~~~~~ig~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~  161 (340)
T PRK13536        109 -------------------------ARLARARIGVVPQFD--NLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFAR  161 (340)
T ss_pred             -------------------------hHHHhccEEEEeCCc--cCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence                                     001134699999986  477889999987532   23322    23557899999


Q ss_pred             CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         329 LPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       329 l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +...... ++.+|||||||||+||++++
T Consensus       162 L~~~~~~-~~~~LS~G~kqrv~lA~aL~  188 (340)
T PRK13536        162 LESKADA-RVSDLSGGMKRRLTLARALI  188 (340)
T ss_pred             CchhhCC-ChhhCCHHHHHHHHHHHHHh
Confidence            9876554 78999999999999999974

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.94  E-value=2e-27  Score=224.78  Aligned_cols=151  Identities=22%  Similarity=0.238  Sum_probs=117.4

Q ss_pred             CCcEEEecceeeeCC------------CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc
Q psy2684         177 PPVLGLHDVTFGYPG------------GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF  244 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~------------~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~  244 (356)
                      +++|+++|+++.|+.            ...+++++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus         6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i   85 (331)
T PRK15079          6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL   85 (331)
T ss_pred             CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence            568999999999952            14589999999999999999999999999999999999999999999998876


Q ss_pred             ccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---c--CCCH--
Q psy2684         245 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---F--NLPY--  317 (356)
Q Consensus       245 ~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~--~~~~--  317 (356)
                      ....                            ..... ..+.+++|++|++...+++.+|+.+++...   .  +.+.  
T Consensus        86 ~~~~----------------------------~~~~~-~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~  136 (331)
T PRK15079         86 LGMK----------------------------DDEWR-AVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQE  136 (331)
T ss_pred             CcCC----------------------------HHHHH-HHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHH
Confidence            3100                            00000 112469999999854578889999987532   2  2332  


Q ss_pred             --HHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         318 --EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       318 --~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                        +.+.++|+.+++.....++++++|||||+|||+||++++
T Consensus       137 ~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~  177 (331)
T PRK15079        137 VKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALI  177 (331)
T ss_pred             HHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHh
Confidence              345678999999643334567999999999999999974

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.94  E-value=1.9e-27  Score=212.16  Aligned_cols=146  Identities=32%  Similarity=0.430  Sum_probs=114.3

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      +++++|+++.|+++..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++....          
T Consensus         1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~----------   70 (214)
T TIGR02673         1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLR----------   70 (214)
T ss_pred             CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCC----------
Confidence            4789999999943467999999999999999999999999999999999999999999999987653100          


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCCCC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPS  331 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l~~  331 (356)
                                      +  .. ....+..++|++|++  .+++..|+.+++...   .+..    ...+.++++.+++..
T Consensus        71 ----------------~--~~-~~~~~~~i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  129 (214)
T TIGR02673        71 ----------------G--RQ-LPLLRRRIGVVFQDF--RLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEH  129 (214)
T ss_pred             ----------------H--HH-HHHHHhheEEEecCh--hhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh
Confidence                            0  00 001124699999987  367788999887532   1222    235678899999986


Q ss_pred             ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         332 YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       332 ~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ... +++.+|||||||||+||++++
T Consensus       130 ~~~-~~~~~LS~G~~qrl~la~al~  153 (214)
T TIGR02673       130 KAD-AFPEQLSGGEQQRVAIARAIV  153 (214)
T ss_pred             hhh-CChhhCCHHHHHHHHHHHHHh
Confidence            554 467999999999999999974

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.94  E-value=2.2e-27  Score=212.44  Aligned_cols=146  Identities=33%  Similarity=0.424  Sum_probs=113.0

Q ss_pred             EEEecceeeeCCC---ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684         180 LGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG  256 (356)
Q Consensus       180 l~~~~l~~~~~~~---~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG  256 (356)
                      ++++|+++.|+++   +.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++....        
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~--------   72 (218)
T cd03255           1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLS--------   72 (218)
T ss_pred             CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcc--------
Confidence            4689999999532   57999999999999999999999999999999999999999999999987652100        


Q ss_pred             CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCC
Q psy2684         257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGL  329 (356)
Q Consensus       257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l  329 (356)
                                        +  .......+..++|++|++  .+++..|+.+++...   .+..    ...+.++++.+|+
T Consensus        73 ------------------~--~~~~~~~~~~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l  130 (218)
T cd03255          73 ------------------E--KELAAFRRRHIGFVFQSF--NLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGL  130 (218)
T ss_pred             ------------------h--hHHHHHHhhcEEEEeecc--ccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCC
Confidence                              0  000000124699999986  367788999887532   2222    2356788999999


Q ss_pred             CCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         330 PSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       330 ~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .+... +++.+|||||||||+||++++
T Consensus       131 ~~~~~-~~~~~LS~G~~qrv~la~al~  156 (218)
T cd03255         131 GDRLN-HYPSELSGGQQQRVAIARALA  156 (218)
T ss_pred             chhhh-cChhhcCHHHHHHHHHHHHHc
Confidence            87655 467999999999999999974

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=2.6e-27  Score=223.80  Aligned_cols=151  Identities=27%  Similarity=0.283  Sum_probs=117.5

Q ss_pred             CCcEEEecceeeeCC---------CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccC
Q psy2684         177 PPVLGLHDVTFGYPG---------GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLD  247 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~---------~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~  247 (356)
                      .++|+++|+++.|+.         ...++++|||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus         3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~   82 (327)
T PRK11308          3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA   82 (327)
T ss_pred             CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC
Confidence            357999999999952         24689999999999999999999999999999999999999999999998876310


Q ss_pred             cCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---c-CCC----HHH
Q psy2684         248 MESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---F-NLP----YEK  319 (356)
Q Consensus       248 ~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~-~~~----~~~  319 (356)
                      .            .+                .. ...+.+++|+||++...+++.+++.+++...   . ...    ...
T Consensus        83 ~------------~~----------------~~-~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~  133 (327)
T PRK11308         83 D------------PE----------------AQ-KLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREK  133 (327)
T ss_pred             C------------HH----------------HH-HHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHH
Confidence            0            00                00 0113469999999865688889998776431   1 222    234


Q ss_pred             HHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         320 SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       320 ~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +.++|+.+|+.....++++++|||||||||+||++|+
T Consensus       134 ~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~  170 (327)
T PRK11308        134 ALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALM  170 (327)
T ss_pred             HHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHH
Confidence            6788999999743334567999999999999999974

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.94  E-value=2.1e-27  Score=212.83  Aligned_cols=140  Identities=25%  Similarity=0.372  Sum_probs=112.5

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG  259 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG  259 (356)
                      ++++|+++.| +++.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...            
T Consensus         1 i~~~~~~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~------------   67 (220)
T cd03265           1 IEVENLVKKY-GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE------------   67 (220)
T ss_pred             CEEEEEEEEE-CCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC------------
Confidence            4689999999 556799999999999999999999999999999999999999999999988654200            


Q ss_pred             CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCCCCc
Q psy2684         260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSY  332 (356)
Q Consensus       260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l~~~  332 (356)
                                           ....+.+++|++|++  .+++..|+.+++...   .+..    ...+.++++.+++.+.
T Consensus        68 ---------------------~~~~~~~i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~  124 (220)
T cd03265          68 ---------------------PREVRRRIGIVFQDL--SVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEA  124 (220)
T ss_pred             ---------------------hHHHhhcEEEecCCc--cccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH
Confidence                                 001124699999987  367788998887432   2322    2346788999999865


Q ss_pred             cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         333 AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       333 ~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .+ +++.+|||||||||+||++++
T Consensus       125 ~~-~~~~~LS~G~~qr~~la~al~  147 (220)
T cd03265         125 AD-RLVKTYSGGMRRRLEIARSLV  147 (220)
T ss_pred             hh-CChhhCCHHHHHHHHHHHHHh
Confidence            54 477999999999999999974

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.94  E-value=3.8e-27  Score=221.02  Aligned_cols=142  Identities=30%  Similarity=0.440  Sum_probs=114.9

Q ss_pred             CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      .+++++|+++.| ++..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...          
T Consensus         3 ~~i~~~~l~~~~-~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----------   71 (303)
T TIGR01288         3 VAIDLVGVSKSY-GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR----------   71 (303)
T ss_pred             cEEEEEeEEEEe-CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc----------
Confidence            478999999999 566799999999999999999999999999999999999999999999998764200          


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcCCC
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLP  330 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~l~  330 (356)
                                             ....+.++||++|++  .+++..|+.+++...   .+.+.    ..+.++++.+++.
T Consensus        72 -----------------------~~~~~~~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~  126 (303)
T TIGR01288        72 -----------------------ARLARVAIGVVPQFD--NLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE  126 (303)
T ss_pred             -----------------------HHHHhhcEEEEeccc--cCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh
Confidence                                   001134699999986  467788999987532   22332    2355789999998


Q ss_pred             CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         331 SYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       331 ~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ..... ++.+|||||||||+||++++
T Consensus       127 ~~~~~-~~~~LSgG~~qrv~la~al~  151 (303)
T TIGR01288       127 SKADV-RVALLSGGMKRRLTLARALI  151 (303)
T ss_pred             hHhcC-chhhCCHHHHHHHHHHHHHh
Confidence            76554 67999999999999999974

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.94  E-value=4.3e-27  Score=208.55  Aligned_cols=138  Identities=29%  Similarity=0.405  Sum_probs=110.0

Q ss_pred             EecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCc
Q psy2684         182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIG  261 (356)
Q Consensus       182 ~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~G  261 (356)
                      ++|+++.|++++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++..               
T Consensus         2 ~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---------------   66 (205)
T cd03226           2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---------------   66 (205)
T ss_pred             cccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---------------
Confidence            67899999432679999999999999999999999999999999999999999999998865420               


Q ss_pred             hhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCCHHHHHHHHhhcCCCCccccCCC
Q psy2684         262 KSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLPYEKSRRQLGMFGLPSYAHTIPI  338 (356)
Q Consensus       262 KsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~~~~~~~~L~~~~l~~~~~~~~~  338 (356)
                                          ...+.+++|++|++...+ ...|+.+++....   ......+.++++.+++.+..+. ++
T Consensus        67 --------------------~~~~~~i~~~~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~  124 (205)
T cd03226          67 --------------------KERRKSIGYVMQDVDYQL-FTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKER-HP  124 (205)
T ss_pred             --------------------HHhhcceEEEecChhhhh-hhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCC-Cc
Confidence                                011246999999863223 3568998875421   2223567889999999876654 67


Q ss_pred             CCCChHHHHHHHHHHHcC
Q psy2684         339 RDLSGGQKARVALAELTL  356 (356)
Q Consensus       339 ~~LSGGqkqRvalA~~~l  356 (356)
                      .+|||||||||+||++++
T Consensus       125 ~~LS~G~~qrv~laral~  142 (205)
T cd03226         125 LSLSGGQKQRLAIAAALL  142 (205)
T ss_pred             hhCCHHHHHHHHHHHHHH
Confidence            999999999999999874

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.94  E-value=3.3e-27  Score=211.22  Aligned_cols=141  Identities=22%  Similarity=0.357  Sum_probs=113.7

Q ss_pred             cEEEecceeeeCCCc----cccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeee
Q psy2684         179 VLGLHDVTFGYPGGK----VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVAL  254 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~----~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ial  254 (356)
                      +++++|+++.|+ +.    ++++++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.++...       
T Consensus         1 ~l~~~~v~~~~~-~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-------   72 (218)
T cd03266           1 MITADALTKRFR-DVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKE-------   72 (218)
T ss_pred             CeEEEEEEEecC-CCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccC-------
Confidence            478999999994 44    699999999999999999999999999999999999999999999998765200       


Q ss_pred             ecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhc
Q psy2684         255 VGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMF  327 (356)
Q Consensus       255 vG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~  327 (356)
                                                ....+..++|++|++  .+++..|+.+++...   .+..    ...+.++++.+
T Consensus        73 --------------------------~~~~~~~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~  124 (218)
T cd03266          73 --------------------------PAEARRRLGFVSDST--GLYDRLTARENLEYFAGLYGLKGDELTARLEELADRL  124 (218)
T ss_pred             --------------------------HHHHHhhEEEecCCc--ccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence                                      001134699999997  477888999987432   2222    23467789999


Q ss_pred             CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         328 GLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       328 ~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      |+.+.... ++.+|||||||||+||++++
T Consensus       125 ~l~~~~~~-~~~~LS~G~~qrv~laral~  152 (218)
T cd03266         125 GMEELLDR-RVGGFSTGMRQKVAIARALV  152 (218)
T ss_pred             CCHHHHhh-hhhhcCHHHHHHHHHHHHHh
Confidence            99876554 77999999999999999974

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.94  E-value=7.2e-27  Score=209.40  Aligned_cols=137  Identities=32%  Similarity=0.472  Sum_probs=111.6

Q ss_pred             EEEecceeeeCCC---ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684         180 LGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG  256 (356)
Q Consensus       180 l~~~~l~~~~~~~---~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG  256 (356)
                      ++++|+++.|++.   +.+++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.           
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~-----------   69 (220)
T cd03293           1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVT-----------   69 (220)
T ss_pred             CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECc-----------
Confidence            4689999999431   57999999999999999999999999999999999999999999999886542           


Q ss_pred             CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCC
Q psy2684         257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGL  329 (356)
Q Consensus       257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l  329 (356)
                                                ..+..++|++|++  .+++..|+.+++...   .+..    ...+.++++.+++
T Consensus        70 --------------------------~~~~~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l  121 (220)
T cd03293          70 --------------------------GPGPDRGYVFQQD--ALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGL  121 (220)
T ss_pred             --------------------------cccCcEEEEeccc--ccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence                                      0124699999987  367778999887532   2222    2356788999999


Q ss_pred             CCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         330 PSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       330 ~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .+.... ++.+|||||||||+||++++
T Consensus       122 ~~~~~~-~~~~LSgG~~qrl~la~al~  147 (220)
T cd03293         122 SGFENA-YPHQLSGGMRQRVALARALA  147 (220)
T ss_pred             hhhhhC-CcccCCHHHHHHHHHHHHHH
Confidence            876554 67999999999999999974

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.94  E-value=8.3e-27  Score=211.62  Aligned_cols=140  Identities=29%  Similarity=0.364  Sum_probs=112.7

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      +++++|+++.| ++..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...           
T Consensus         2 ~l~~~~l~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-----------   69 (239)
T cd03296           2 SIEVRNVSKRF-GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDV-----------   69 (239)
T ss_pred             EEEEEeEEEEE-CCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcC-----------
Confidence            37899999999 456799999999999999999999999999999999999999999999998764210           


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CC----C----HHHHHHHHhhc
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NL----P----YEKSRRQLGMF  327 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~----~----~~~~~~~L~~~  327 (356)
                                          .   ..+..++|++|++  .+++..|+.+++....   ..    .    .+.+.++++.+
T Consensus        70 --------------------~---~~~~~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  124 (239)
T cd03296          70 --------------------P---VQERNVGFVFQHY--ALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLV  124 (239)
T ss_pred             --------------------C---ccccceEEEecCC--cccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHc
Confidence                                0   0124699999986  3677789998875321   11    1    13456789999


Q ss_pred             CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         328 GLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       328 ~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ++.+... +++.+|||||||||+||++++
T Consensus       125 ~l~~~~~-~~~~~LS~G~~qrl~la~al~  152 (239)
T cd03296         125 QLDWLAD-RYPAQLSGGQRQRVALARALA  152 (239)
T ss_pred             CChhhhh-cChhhCCHHHHHHHHHHHHHh
Confidence            9976555 467999999999999999974

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.94  E-value=5e-27  Score=208.60  Aligned_cols=139  Identities=25%  Similarity=0.430  Sum_probs=114.0

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG  259 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG  259 (356)
                      ++++|+++.| ++.++++++||++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++..             
T Consensus         1 l~~~~l~~~~-~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-------------   66 (208)
T cd03268           1 LKTNDLTKTY-GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQK-------------   66 (208)
T ss_pred             CEEEEEEEEE-CCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccc-------------
Confidence            4689999999 55689999999999999999999999999999999999999999999998765420             


Q ss_pred             CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCHHHHHHHHhhcCCCCccccC
Q psy2684         260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPYEKSRRQLGMFGLPSYAHTI  336 (356)
Q Consensus       260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~~~~~~~L~~~~l~~~~~~~  336 (356)
                                          . ...+..++|++|++  .+++..|+.+++...   .+.....+.++++.+++...... 
T Consensus        67 --------------------~-~~~~~~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-  122 (208)
T cd03268          67 --------------------N-IEALRRIGALIEAP--GFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKK-  122 (208)
T ss_pred             --------------------h-HHHHhhEEEecCCC--ccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhh-
Confidence                                0 01124699999986  477788999987532   23345667889999999876554 


Q ss_pred             CCCCCChHHHHHHHHHHHcC
Q psy2684         337 PIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       337 ~~~~LSGGqkqRvalA~~~l  356 (356)
                      ++.+|||||||||+||++++
T Consensus       123 ~~~~LS~G~~qrv~la~al~  142 (208)
T cd03268         123 KVKGFSLGMKQRLGIALALL  142 (208)
T ss_pred             hHhhCCHHHHHHHHHHHHHh
Confidence            67999999999999999974

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.94  E-value=6.7e-27  Score=201.08  Aligned_cols=94  Identities=28%  Similarity=0.461  Sum_probs=82.3

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT---WKKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~---~~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .+.++.+|||||||||+|||||+++|+++|+|||||.|||+.+..+.+.+++   -+.|+|+|||++.|+.++||||+.|
T Consensus       130 a~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFm  209 (240)
T COG1126         130 ADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFM  209 (240)
T ss_pred             hhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEe
Confidence            4678999999999999999999999999999999999999998877666654   4789999999999999999999999


Q ss_pred             eCCeEeEecCCHHHHHH
Q psy2684          79 DMKKLFYYKGNFTLFKK   95 (356)
Q Consensus        79 ~~g~~~~~~g~~~~~~~   95 (356)
                      ++|+++..+.+-+.|..
T Consensus       210 d~G~iie~g~p~~~f~~  226 (240)
T COG1126         210 DQGKIIEEGPPEEFFDN  226 (240)
T ss_pred             eCCEEEEecCHHHHhcC
Confidence            99999876533344443

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=1e-26  Score=212.88  Aligned_cols=137  Identities=28%  Similarity=0.396  Sum_probs=112.5

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      +++++|+++.| ++..+++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++..            
T Consensus         1 ml~~~~l~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~------------   67 (255)
T PRK11248          1 MLQISHLYADY-GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEG------------   67 (255)
T ss_pred             CEEEEEEEEEe-CCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCC------------
Confidence            47899999999 45679999999999999999999999999999999999999999999998866420            


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCCCC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPS  331 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l~~  331 (356)
                                               ....++|++|++  .+++..|+.+++...   .+..    ...+.++++.+|+.+
T Consensus        68 -------------------------~~~~~~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~  120 (255)
T PRK11248         68 -------------------------PGAERGVVFQNE--GLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEG  120 (255)
T ss_pred             -------------------------CCCcEEEEeCCC--ccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChh
Confidence                                     012479999986  467778999887532   2222    234678899999987


Q ss_pred             ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         332 YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       332 ~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ... +++.+|||||||||+||++++
T Consensus       121 ~~~-~~~~~LSgGq~qrl~laral~  144 (255)
T PRK11248        121 AEK-RYIWQLSGGQRQRVGIARALA  144 (255)
T ss_pred             Hhh-CChhhCCHHHHHHHHHHHHHh
Confidence            555 467999999999999999974

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.94  E-value=1.4e-26  Score=206.58  Aligned_cols=143  Identities=28%  Similarity=0.421  Sum_probs=115.6

Q ss_pred             CCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeee
Q psy2684         175 LPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVAL  254 (356)
Q Consensus       175 ~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ial  254 (356)
                      .++++++++|+++.| +++.+++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++..        
T Consensus         7 ~~~~~l~~~~l~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~--------   77 (214)
T PRK13543          7 TAPPLLAAHALAFSR-NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATR--------   77 (214)
T ss_pred             CCcceEEEeeEEEec-CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccc--------
Confidence            345689999999999 45679999999999999999999999999999999999999999999999866420        


Q ss_pred             ecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CC-CHHHHHHHHhhcCCC
Q psy2684         255 VGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NL-PYEKSRRQLGMFGLP  330 (356)
Q Consensus       255 vG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~-~~~~~~~~L~~~~l~  330 (356)
                                             .    ..+..++|++|++  .+++..|+.+++....   +. ..+.+++++..+++.
T Consensus        78 -----------------------~----~~~~~i~~~~q~~--~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~  128 (214)
T PRK13543         78 -----------------------G----DRSRFMAYLGHLP--GLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLA  128 (214)
T ss_pred             -----------------------h----hhhhceEEeecCc--ccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCCh
Confidence                                   0    0123589999986  3677779998874321   22 234567889999998


Q ss_pred             CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         331 SYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       331 ~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .... +++.+|||||||||+||++++
T Consensus       129 ~~~~-~~~~~LS~G~~qrv~laral~  153 (214)
T PRK13543        129 GYED-TLVRQLSAGQKKRLALARLWL  153 (214)
T ss_pred             hhcc-CChhhCCHHHHHHHHHHHHHh
Confidence            7654 477999999999999999974

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.94  E-value=6.3e-27  Score=207.34  Aligned_cols=141  Identities=28%  Similarity=0.410  Sum_probs=114.5

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      +++++|+++.| ++..+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...           
T Consensus         1 ~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~-----------   68 (204)
T PRK13538          1 MLEARNLACER-DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQ-----------   68 (204)
T ss_pred             CeEEEEEEEEE-CCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccc-----------
Confidence            47899999999 556799999999999999999999999999999999999999999999998764200           


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---C-CCHHHHHHHHhhcCCCCccc
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---N-LPYEKSRRQLGMFGLPSYAH  334 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~-~~~~~~~~~L~~~~l~~~~~  334 (356)
                                            ....+.+++|++|++  .+++..|+.+++....   + .....+.++++.+|+.+..+
T Consensus        69 ----------------------~~~~~~~~~~~~~~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~  124 (204)
T PRK13538         69 ----------------------RDEYHQDLLYLGHQP--GIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFED  124 (204)
T ss_pred             ----------------------hHHhhhheEEeCCcc--ccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhh
Confidence                                  001124689999986  4677889999875322   2 23456778999999986554


Q ss_pred             cCCCCCCChHHHHHHHHHHHcC
Q psy2684         335 TIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       335 ~~~~~~LSGGqkqRvalA~~~l  356 (356)
                       +++.+||||||||++||++++
T Consensus       125 -~~~~~LS~G~~qrl~la~al~  145 (204)
T PRK13538        125 -VPVRQLSAGQQRRVALARLWL  145 (204)
T ss_pred             -CChhhcCHHHHHHHHHHHHHh
Confidence             477999999999999999974

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.94  E-value=6.1e-27  Score=212.03  Aligned_cols=142  Identities=33%  Similarity=0.464  Sum_probs=111.8

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG  259 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG  259 (356)
                      ++++|+++.| ++..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...            
T Consensus         1 l~~~~l~~~~-~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~------------   67 (236)
T cd03219           1 LEVRGLTKRF-GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGL------------   67 (236)
T ss_pred             CeeeeeEEEE-CCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCC------------
Confidence            4689999999 456799999999999999999999999999999999999999999999998765210            


Q ss_pred             CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CC-----------C---HHHHHH
Q psy2684         260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NL-----------P---YEKSRR  322 (356)
Q Consensus       260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~-----------~---~~~~~~  322 (356)
                                         ......+..++|++|++  .+++..|+.+++....   ..           .   ...+.+
T Consensus        68 -------------------~~~~~~~~~i~~v~q~~--~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (236)
T cd03219          68 -------------------PPHEIARLGIGRTFQIP--RLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEE  126 (236)
T ss_pred             -------------------CHHHHHhcCEEEEeccc--ccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHH
Confidence                               00000123589999986  3778889999875321   11           1   224667


Q ss_pred             HHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         323 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       323 ~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +++.+|+..... +++.+|||||||||+||++++
T Consensus       127 ~l~~~~l~~~~~-~~~~~LSgG~~qrv~la~al~  159 (236)
T cd03219         127 LLERVGLADLAD-RPAGELSYGQQRRLEIARALA  159 (236)
T ss_pred             HHHHcCccchhh-CChhhCCHHHHHHHHHHHHHh
Confidence            899999987655 477999999999999999974

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.94  E-value=8.6e-27  Score=215.14  Aligned_cols=147  Identities=27%  Similarity=0.440  Sum_probs=115.3

Q ss_pred             CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684         177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG  256 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG  256 (356)
                      +++++++|+++.| +++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++....        
T Consensus         5 ~~~l~~~~l~~~~-~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~--------   75 (269)
T PRK11831          5 ANLVDMRGVSFTR-GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMS--------   75 (269)
T ss_pred             cceEEEeCeEEEE-CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccC--------
Confidence            3579999999999 5667999999999999999999999999999999999999999999999987652100        


Q ss_pred             CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---c-CCCH----HHHHHHHhhcC
Q psy2684         257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---F-NLPY----EKSRRQLGMFG  328 (356)
Q Consensus       257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~-~~~~----~~~~~~L~~~~  328 (356)
                                        +  ... ...+.+++|++|++  .+++..|+.+++...   . ....    ..+.++|+.+|
T Consensus        76 ------------------~--~~~-~~~~~~i~~v~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~g  132 (269)
T PRK11831         76 ------------------R--SRL-YTVRKRMSMLFQSG--ALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVG  132 (269)
T ss_pred             ------------------h--hhH-HHHhhcEEEEeccc--ccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcC
Confidence                              0  000 01124699999986  467788999987532   1 1222    24567899999


Q ss_pred             CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         329 LPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       329 l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +.+..+. ++.+|||||||||+||++++
T Consensus       133 l~~~~~~-~~~~LSgGq~qrv~laral~  159 (269)
T PRK11831        133 LRGAAKL-MPSELSGGMARRAALARAIA  159 (269)
T ss_pred             ChhhhhC-ChhhCCHHHHHHHHHHHHHh
Confidence            9876554 67999999999999999974

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=5.5e-27  Score=223.27  Aligned_cols=146  Identities=26%  Similarity=0.366  Sum_probs=115.2

Q ss_pred             cEEEecceeeeCC---CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684         179 VLGLHDVTFGYPG---GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV  255 (356)
Q Consensus       179 ~l~~~~l~~~~~~---~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv  255 (356)
                      |++++|+++.|++   ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....       
T Consensus         1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~-------   73 (343)
T PRK11153          1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALS-------   73 (343)
T ss_pred             CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCC-------
Confidence            4789999999951   357999999999999999999999999999999999999999999999987753100       


Q ss_pred             cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcC
Q psy2684         256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFG  328 (356)
Q Consensus       256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~  328 (356)
                                         +  ... ...+.++||++|++  .+++..|+.+++...   .+.+.    ..+.++++.+|
T Consensus        74 -------------------~--~~~-~~~~~~ig~v~q~~--~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~g  129 (343)
T PRK11153         74 -------------------E--KEL-RKARRQIGMIFQHF--NLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVG  129 (343)
T ss_pred             -------------------H--HHH-HHHhcCEEEEeCCC--ccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence                               0  000 01134699999987  377888999987532   23322    34667899999


Q ss_pred             CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         329 LPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       329 l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +.+..+. ++.+|||||||||+||++++
T Consensus       130 L~~~~~~-~~~~LSgGq~qRv~lAraL~  156 (343)
T PRK11153        130 LSDKADR-YPAQLSGGQKQRVAIARALA  156 (343)
T ss_pred             CchhhhC-ChhhCCHHHHHHHHHHHHHH
Confidence            9876554 67999999999999999974

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.94  E-value=6.8e-27  Score=208.45  Aligned_cols=139  Identities=25%  Similarity=0.365  Sum_probs=111.6

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG  259 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG  259 (356)
                      ++++|+++.| +++.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...            
T Consensus         1 i~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~------------   67 (213)
T cd03301           1 VELENVTKRF-GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDL------------   67 (213)
T ss_pred             CEEEeeEEEE-CCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcC------------
Confidence            4689999999 456799999999999999999999999999999999999999999999998765210            


Q ss_pred             CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCCCCc
Q psy2684         260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSY  332 (356)
Q Consensus       260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l~~~  332 (356)
                                         ..   .+..++|++|++  .+++..|+.+++...   ....    .+.+.++++.+|+...
T Consensus        68 -------------------~~---~~~~i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~  123 (213)
T cd03301          68 -------------------PP---KDRDIAMVFQNY--ALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHL  123 (213)
T ss_pred             -------------------Cc---ccceEEEEecCh--hhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHH
Confidence                               00   124699999986  367788999887532   1222    2345678999999865


Q ss_pred             cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         333 AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       333 ~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .+ +++.+||||||||++||++++
T Consensus       124 ~~-~~~~~LS~G~~qr~~laral~  146 (213)
T cd03301         124 LD-RKPKQLSGGQRQRVALGRAIV  146 (213)
T ss_pred             Hh-CChhhCCHHHHHHHHHHHHHh
Confidence            55 477999999999999999874

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.94  E-value=1.1e-26  Score=210.43  Aligned_cols=141  Identities=29%  Similarity=0.441  Sum_probs=112.8

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      +++++|+++.| +++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...           
T Consensus         1 ~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~-----------   68 (236)
T TIGR03864         1 ALEVAGLSFAY-GARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRA-----------   68 (236)
T ss_pred             CEEEEeeEEEE-CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccC-----------
Confidence            47899999999 456799999999999999999999999999999999999999999999998764210           


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCCCC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPS  331 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l~~  331 (356)
                                          .  ......++|++|++  .+++..|+.+++...   .+..    ...+.++++.+|+..
T Consensus        69 --------------------~--~~~~~~i~~~~q~~--~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~  124 (236)
T TIGR03864        69 --------------------P--RAALARLGVVFQQP--TLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAE  124 (236)
T ss_pred             --------------------C--hhhhhhEEEeCCCC--CCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh
Confidence                                0  00113699999986  366778998887532   1222    234677899999987


Q ss_pred             ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         332 YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       332 ~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .... ++.+|||||||||+||++++
T Consensus       125 ~~~~-~~~~LS~G~~qrl~laral~  148 (236)
T TIGR03864       125 RADD-KVRELNGGHRRRVEIARALL  148 (236)
T ss_pred             hhcC-ChhhCCHHHHHHHHHHHHHh
Confidence            6554 67999999999999999974

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.94  E-value=1.1e-26  Score=196.33  Aligned_cols=136  Identities=31%  Similarity=0.495  Sum_probs=115.1

Q ss_pred             cEEEecceeeeCCCcc--ccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684         179 VLGLHDVTFGYPGGKV--LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG  256 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~--~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG  256 (356)
                      ++.+++++..| ++++  +++|+|++|.+||.++++||||||||||+++++|+.+|+.|+|.++|..+.          |
T Consensus         3 ~l~~~~~sl~y-~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~----------g   71 (259)
T COG4525           3 MLNVSHLSLSY-EGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIE----------G   71 (259)
T ss_pred             eeehhheEEec-CCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEecc----------C
Confidence            46788999999 4555  999999999999999999999999999999999999999999999998775          3


Q ss_pred             CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHH---hcCCCH----HHHHHHHhhcCC
Q psy2684         257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK---LFNLPY----EKSRRQLGMFGL  329 (356)
Q Consensus       257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~---~~~~~~----~~~~~~L~~~~l  329 (356)
                      |.                           ..-|.|||+.  .++|.+++.+|+..   ..++..    +.+.+.|..+|+
T Consensus        72 Pg---------------------------aergvVFQ~~--~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL  122 (259)
T COG4525          72 PG---------------------------AERGVVFQNE--ALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGL  122 (259)
T ss_pred             CC---------------------------ccceeEeccC--ccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCc
Confidence            31                           2348899986  58999999998854   334443    346678999999


Q ss_pred             CCccccCCCCCCChHHHHHHHHHHHc
Q psy2684         330 PSYAHTIPIRDLSGGQKARVALAELT  355 (356)
Q Consensus       330 ~~~~~~~~~~~LSGGqkqRvalA~~~  355 (356)
                      ....++ .+.+|||||||||.|||+|
T Consensus       123 ~~~~~~-~i~qLSGGmrQRvGiARAL  147 (259)
T COG4525         123 EGAEHK-YIWQLSGGMRQRVGIARAL  147 (259)
T ss_pred             cccccc-ceEeecchHHHHHHHHHHh
Confidence            987754 6789999999999999997

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.94  E-value=7.3e-27  Score=211.16  Aligned_cols=145  Identities=29%  Similarity=0.409  Sum_probs=113.9

Q ss_pred             cEEEecceeeeCCCc----cccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeee
Q psy2684         179 VLGLHDVTFGYPGGK----VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVAL  254 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~----~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ial  254 (356)
                      +++++|+++.|+ ++    ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....      
T Consensus         1 ~i~~~~l~~~~~-~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~------   73 (233)
T cd03258           1 MIELKNVSKVFG-DTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLS------   73 (233)
T ss_pred             CeEEecceEEcc-CCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCC------
Confidence            478999999994 44    7999999999999999999999999999999999999999999999987653100      


Q ss_pred             ecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhc
Q psy2684         255 VGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMF  327 (356)
Q Consensus       255 vG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~  327 (356)
                                          +  ... ...+..++|++|++  .+++..|+.+++...   .+..    ...+.++++.+
T Consensus        74 --------------------~--~~~-~~~~~~i~~~~q~~--~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~  128 (233)
T cd03258          74 --------------------G--KEL-RKARRRIGMIFQHF--NLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELV  128 (233)
T ss_pred             --------------------H--HHH-HHHHhheEEEccCc--ccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence                                0  000 00124699999996  477788999987532   2222    23467889999


Q ss_pred             CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         328 GLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       328 ~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ++.+.... ++.+|||||||||+||++++
T Consensus       129 ~l~~~~~~-~~~~LS~G~~qrv~la~al~  156 (233)
T cd03258         129 GLEDKADA-YPAQLSGGQKQRVGIARALA  156 (233)
T ss_pred             CChhhhhc-ChhhCCHHHHHHHHHHHHHh
Confidence            99876554 67999999999999999874

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.94  E-value=6.4e-27  Score=225.76  Aligned_cols=143  Identities=27%  Similarity=0.445  Sum_probs=115.9

Q ss_pred             CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      ++++++|+++.| +++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...          
T Consensus         2 ~~L~~~nls~~y-~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~----------   70 (402)
T PRK09536          2 PMIDVSDLSVEF-GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEAL----------   70 (402)
T ss_pred             ceEEEeeEEEEE-CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcC----------
Confidence            468999999999 567899999999999999999999999999999999999999999999998765310          


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-------C-CC---HHHHHHHHhh
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-------N-LP---YEKSRRQLGM  326 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-------~-~~---~~~~~~~L~~  326 (356)
                                           . ....+.++||++|++  .++..+|+.+++....       . ..   .+.++++++.
T Consensus        71 ---------------------~-~~~~~~~ig~v~q~~--~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~  126 (402)
T PRK09536         71 ---------------------S-ARAASRRVASVPQDT--SLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMER  126 (402)
T ss_pred             ---------------------C-HHHHhcceEEEccCC--CCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHH
Confidence                                 0 001134699999986  4667789999875321       1 11   2356788999


Q ss_pred             cCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         327 FGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       327 ~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +|+.+..+ +++.+|||||||||+||++|+
T Consensus       127 vgl~~~~~-~~~~~LSgGerQRv~IArAL~  155 (402)
T PRK09536        127 TGVAQFAD-RPVTSLSGGERQRVLLARALA  155 (402)
T ss_pred             cCCchhhc-CChhhCCHHHHHHHHHHHHHH
Confidence            99987665 478999999999999999974

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.94  E-value=9.7e-28  Score=200.13  Aligned_cols=155  Identities=28%  Similarity=0.438  Sum_probs=122.5

Q ss_pred             CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      +.++++|+.++| +...+|+++|++..+|++++|||.|||||||+|+||.-+.+|+.|.|.++|..+....+..      
T Consensus         5 ~~l~v~dlHK~~-G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~------   77 (256)
T COG4598           5 NALEVEDLHKRY-GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKD------   77 (256)
T ss_pred             cceehhHHHhhc-ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCC------
Confidence            458999999999 7778999999999999999999999999999999999999999999999999886543221      


Q ss_pred             CCCchhhHHHHHhCCCCC-CcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh----cCCCH----HHHHHHHhhcC
Q psy2684         258 NGIGKSTFLNLLKGELTP-NKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLPY----EKSRRQLGMFG  328 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~-~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~----~~~~~----~~~~~~L~~~~  328 (356)
                       |.            +.+ +...+ ...+.+.|++||++  ++...+|+.|++...    .+.+.    +.++.+|.++|
T Consensus        78 -G~------------l~~ad~~q~-~r~Rs~L~mVFQ~F--NLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVG  141 (256)
T COG4598          78 -GQ------------LKPADKRQL-QRLRTRLGMVFQHF--NLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVG  141 (256)
T ss_pred             -CC------------eeeCCHHHH-HHHHHHhhHhhhhc--chhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhC
Confidence             11            111 11111 11234689999997  478899999998753    24443    45677899999


Q ss_pred             CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         329 LPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       329 l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +....+.+ |..||||||||++|||+|.
T Consensus       142 i~ek~~~Y-P~~LSGGQQQR~aIARaLa  168 (256)
T COG4598         142 IAEKADAY-PAHLSGGQQQRVAIARALA  168 (256)
T ss_pred             chhhhhcC-ccccCchHHHHHHHHHHHh
Confidence            98877765 4789999999999999973

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.94  E-value=1.2e-26  Score=205.04  Aligned_cols=141  Identities=28%  Similarity=0.379  Sum_probs=113.6

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      +++++|+++.| ++..+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|+++|.++...           
T Consensus         1 ml~~~~l~~~~-~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~-----------   68 (200)
T PRK13540          1 MLDVIELDFDY-HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKD-----------   68 (200)
T ss_pred             CEEEEEEEEEe-CCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccC-----------
Confidence            47899999999 456799999999999999999999999999999999999999999999998654200           


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc--CCCHHHHHHHHhhcCCCCccccC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF--NLPYEKSRRQLGMFGLPSYAHTI  336 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~--~~~~~~~~~~L~~~~l~~~~~~~  336 (356)
                                            ....+.+++|++|++  .+++..|+.+++....  ......+.++++.+++....+ +
T Consensus        69 ----------------------~~~~~~~i~~~~q~~--~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~  123 (200)
T PRK13540         69 ----------------------LCTYQKQLCFVGHRS--GINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLID-Y  123 (200)
T ss_pred             ----------------------HHHHHhheEEecccc--ccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhh-C
Confidence                                  000124689999986  3667889999875421  122345788999999976554 5


Q ss_pred             CCCCCChHHHHHHHHHHHcC
Q psy2684         337 PIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       337 ~~~~LSGGqkqRvalA~~~l  356 (356)
                      ++.+|||||+||++||++++
T Consensus       124 ~~~~LS~G~~~rv~laral~  143 (200)
T PRK13540        124 PCGLLSSGQKRQVALLRLWM  143 (200)
T ss_pred             ChhhcCHHHHHHHHHHHHHh
Confidence            77999999999999999974

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=4.7e-27  Score=217.35  Aligned_cols=145  Identities=27%  Similarity=0.385  Sum_probs=114.1

Q ss_pred             CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      ++++++|+++.|+++..+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...          
T Consensus         3 ~~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----------   72 (274)
T PRK13647          3 NIIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAE----------   72 (274)
T ss_pred             ceEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCC----------
Confidence            3689999999995446799999999999999999999999999999999999999999999998765310          


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcCCC
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLP  330 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~l~  330 (356)
                                           . ....+..+||++|++...+ ...|+.+++...   .+...    ..+.++++.+|+.
T Consensus        73 ---------------------~-~~~~~~~i~~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~  129 (274)
T PRK13647         73 ---------------------N-EKWVRSKVGLVFQDPDDQV-FSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMW  129 (274)
T ss_pred             ---------------------C-HHHHHhhEEEEecChhhhh-ccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH
Confidence                                 0 0001246999999874233 357898887532   12222    3467789999998


Q ss_pred             CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         331 SYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       331 ~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +... +++.+|||||||||+||++++
T Consensus       130 ~~~~-~~~~~LSgG~~qrv~laraL~  154 (274)
T PRK13647        130 DFRD-KPPYHLSYGQKKRVAIAGVLA  154 (274)
T ss_pred             HHhc-CChhhCCHHHHHHHHHHHHHH
Confidence            6655 477999999999999999974

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.94  E-value=6e-27  Score=208.86  Aligned_cols=136  Identities=33%  Similarity=0.442  Sum_probs=108.0

Q ss_pred             EecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCc
Q psy2684         182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIG  261 (356)
Q Consensus       182 ~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~G  261 (356)
                      ++|+++.| ++..+++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++.                
T Consensus         2 ~~~l~~~~-~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~----------------   64 (213)
T cd03235           2 VEDLTVSY-GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE----------------   64 (213)
T ss_pred             cccceeEE-CCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH----------------
Confidence            68999999 4567999999999999999999999999999999999999999999999875431                


Q ss_pred             hhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC--------C---CHHHHHHHHhhcCCC
Q psy2684         262 KSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN--------L---PYEKSRRQLGMFGLP  330 (356)
Q Consensus       262 KsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~--------~---~~~~~~~~L~~~~l~  330 (356)
                                           ..+.+++|++|++....+...|+.+++.....        .   ....+.++++.+++.
T Consensus        65 ---------------------~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~  123 (213)
T cd03235          65 ---------------------KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLS  123 (213)
T ss_pred             ---------------------HHHhheEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCH
Confidence                                 01246899999874222234789998754211        0   123467789999998


Q ss_pred             CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         331 SYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       331 ~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .... +++.+|||||||||+||++++
T Consensus       124 ~~~~-~~~~~LSgG~~qrv~la~al~  148 (213)
T cd03235         124 ELAD-RQIGELSGGQQQRVLLARALV  148 (213)
T ss_pred             HHHh-CCcccCCHHHHHHHHHHHHHH
Confidence            6554 477999999999999999974

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.94  E-value=7.2e-27  Score=207.88  Aligned_cols=137  Identities=26%  Similarity=0.493  Sum_probs=111.8

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG  259 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG  259 (356)
                      ++++|+++.| +++.+++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++..             
T Consensus         1 l~~~~l~~~~-~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-------------   66 (210)
T cd03269           1 LEVENVTKRF-GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI-------------   66 (210)
T ss_pred             CEEEEEEEEE-CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH-------------
Confidence            4689999999 45679999999999999999999999999999999999999999999998765420             


Q ss_pred             CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCCCCc
Q psy2684         260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSY  332 (356)
Q Consensus       260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l~~~  332 (356)
                                             ..+..++|++|++  .+++..|+.+++...   .+..    .+.+.++++.+|+.+.
T Consensus        67 -----------------------~~~~~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~  121 (210)
T cd03269          67 -----------------------AARNRIGYLPEER--GLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEY  121 (210)
T ss_pred             -----------------------HHHccEEEeccCC--cCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHH
Confidence                                   0124689999987  467788999987532   2222    2346778999999865


Q ss_pred             cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         333 AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       333 ~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ... ++.+|||||||||+||++++
T Consensus       122 ~~~-~~~~LS~G~~qrl~la~al~  144 (210)
T cd03269         122 ANK-RVEELSKGNQQKVQFIAAVI  144 (210)
T ss_pred             HhC-cHhhCCHHHHHHHHHHHHHh
Confidence            554 67999999999999999874

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.94  E-value=1.6e-26  Score=204.32  Aligned_cols=140  Identities=29%  Similarity=0.411  Sum_probs=113.7

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG  259 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG  259 (356)
                      ++++|+++.| +++.+++++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...            
T Consensus         1 l~i~~l~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~------------   67 (201)
T cd03231           1 LEADELTCER-DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQ------------   67 (201)
T ss_pred             CEEEEEEEEe-CCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc------------
Confidence            4689999999 556799999999999999999999999999999999999999999999987654200            


Q ss_pred             CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC-CCHHHHHHHHhhcCCCCccccCCC
Q psy2684         260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN-LPYEKSRRQLGMFGLPSYAHTIPI  338 (356)
Q Consensus       260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~-~~~~~~~~~L~~~~l~~~~~~~~~  338 (356)
                                           ....+.+++|++|++  .+++..|+.+++..... .....+.++++.+++.+... +++
T Consensus        68 ---------------------~~~~~~~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~  123 (201)
T cd03231          68 ---------------------RDSIARGLLYLGHAP--GIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFED-RPV  123 (201)
T ss_pred             ---------------------cHHhhhheEEecccc--ccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhc-Cch
Confidence                                 001134699999986  36677899998754322 24456788899999987654 477


Q ss_pred             CCCChHHHHHHHHHHHcC
Q psy2684         339 RDLSGGQKARVALAELTL  356 (356)
Q Consensus       339 ~~LSGGqkqRvalA~~~l  356 (356)
                      .+||||||||++||++++
T Consensus       124 ~~LS~G~~qrl~laral~  141 (201)
T cd03231         124 AQLSAGQQRRVALARLLL  141 (201)
T ss_pred             hhCCHHHHHHHHHHHHHh
Confidence            999999999999999974

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=1.1e-26  Score=218.99  Aligned_cols=164  Identities=24%  Similarity=0.296  Sum_probs=116.2

Q ss_pred             CCCCcEEEecceeeeCCC----ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCC
Q psy2684         175 LPPPVLGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMES  250 (356)
Q Consensus       175 ~~~~~l~~~~l~~~~~~~----~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~  250 (356)
                      .++++++++|+++.|++.    ..+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++......
T Consensus        17 ~~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~   96 (320)
T PRK13631         17 SDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNN   96 (320)
T ss_pred             CCCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccc
Confidence            345789999999999532    3599999999999999999999999999999999999999999999998775310000


Q ss_pred             eeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHH
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQ  323 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~  323 (356)
                      . .+ ..+-..+              ........+.++||++|++...+++ .|+.+++...   .+.+.    ..+.++
T Consensus        97 ~-~~-~~~~~~~--------------~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~  159 (320)
T PRK13631         97 H-EL-ITNPYSK--------------KIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFY  159 (320)
T ss_pred             c-cc-ccccccc--------------ccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHH
Confidence            0 00 0000000              0000001235799999997545665 4888887432   12222    345678


Q ss_pred             HhhcCCC-CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         324 LGMFGLP-SYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       324 L~~~~l~-~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ++.+|+. .... +++.+|||||||||+||++++
T Consensus       160 l~~~gL~~~~~~-~~~~~LSgGqkqRvaiAraL~  192 (320)
T PRK13631        160 LNKMGLDDSYLE-RSPFGLSGGQKRRVAIAGILA  192 (320)
T ss_pred             HHHcCCChhHhc-CCcccCCHHHHHHHHHHHHHH
Confidence            9999997 4444 467999999999999999974

>PRK10908 cell division protein FtsE; Provisional

Probab=99.94  E-value=1.3e-26  Score=207.95  Aligned_cols=146  Identities=27%  Similarity=0.349  Sum_probs=113.8

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      +++++|+++.|+++..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++....          
T Consensus         1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----------   70 (222)
T PRK10908          1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLK----------   70 (222)
T ss_pred             CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCC----------
Confidence            4789999999944467999999999999999999999999999999999999999999999987652100          


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcCCCC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPS  331 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~l~~  331 (356)
                                      +  ... ...+..++|++|++  .+++..|+.+++...   .+...    ..+.++++.+++.+
T Consensus        71 ----------------~--~~~-~~~~~~i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  129 (222)
T PRK10908         71 ----------------N--REV-PFLRRQIGMIFQDH--HLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLD  129 (222)
T ss_pred             ----------------h--hHH-HHHHhheEEEecCc--cccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChh
Confidence                            0  000 00134699999987  366778999887532   22222    23567899999987


Q ss_pred             ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         332 YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       332 ~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .... ++.+|||||||||+||++++
T Consensus       130 ~~~~-~~~~LS~G~~qrv~laral~  153 (222)
T PRK10908        130 KAKN-FPIQLSGGEQQRVGIARAVV  153 (222)
T ss_pred             hhhC-CchhCCHHHHHHHHHHHHHH
Confidence            6554 67999999999999999974

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.94  E-value=1.1e-26  Score=209.33  Aligned_cols=148  Identities=24%  Similarity=0.233  Sum_probs=114.5

Q ss_pred             CcEEEecceeeeCCC---ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeee
Q psy2684         178 PVLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVAL  254 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~---~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ial  254 (356)
                      ++++++|+++.|+++   ..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++....      
T Consensus         5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~------   78 (228)
T PRK10584          5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMD------   78 (228)
T ss_pred             ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCC------
Confidence            579999999999532   25899999999999999999999999999999999999999999999987652100      


Q ss_pred             ecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhc
Q psy2684         255 VGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMF  327 (356)
Q Consensus       255 vG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~  327 (356)
                                          +  ..........++|++|++  .+++..|+.+++...   ....    .+++.++++.+
T Consensus        79 --------------------~--~~~~~~~~~~i~~~~q~~--~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  134 (228)
T PRK10584         79 --------------------E--EARAKLRAKHVGFVFQSF--MLIPTLNALENVELPALLRGESSRQSRNGAKALLEQL  134 (228)
T ss_pred             --------------------H--HHHHHHHhheEEEEEccc--ccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc
Confidence                                0  000000124699999986  467778999887532   1222    23567889999


Q ss_pred             CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         328 GLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       328 ~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ++.+.... ++.+|||||||||+||++++
T Consensus       135 ~l~~~~~~-~~~~LS~Ge~qrl~la~al~  162 (228)
T PRK10584        135 GLGKRLDH-LPAQLSGGEQQRVALARAFN  162 (228)
T ss_pred             CCHhHhhC-ChhhCCHHHHHHHHHHHHHh
Confidence            99866554 67999999999999999974

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.94  E-value=1.1e-26  Score=204.73  Aligned_cols=140  Identities=30%  Similarity=0.473  Sum_probs=112.7

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG  259 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG  259 (356)
                      ++++|+++.| +++.+++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...            
T Consensus         1 l~~~~l~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~------------   67 (198)
T TIGR01189         1 LAARNLACSR-GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQ------------   67 (198)
T ss_pred             CEEEEEEEEE-CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccc------------
Confidence            4689999999 567799999999999999999999999999999999999999999999998764210            


Q ss_pred             CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCCHHHHHHHHhhcCCCCccccC
Q psy2684         260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLPYEKSRRQLGMFGLPSYAHTI  336 (356)
Q Consensus       260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~~~~~~~~L~~~~l~~~~~~~  336 (356)
                                           ....+..++|++|++  .+++..|+.+++....   ......+.++++.+++.+... +
T Consensus        68 ---------------------~~~~~~~i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~  123 (198)
T TIGR01189        68 ---------------------RDEPHRNILYLGHLP--GLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFED-L  123 (198)
T ss_pred             ---------------------hHHhhhheEEeccCc--ccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhc-C
Confidence                                 001124689999975  4677789999875322   222345778899999987654 4


Q ss_pred             CCCCCChHHHHHHHHHHHcC
Q psy2684         337 PIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       337 ~~~~LSGGqkqRvalA~~~l  356 (356)
                      ++.+|||||||||+||++++
T Consensus       124 ~~~~LS~G~~qrv~la~al~  143 (198)
T TIGR01189       124 PAAQLSAGQQRRLALARLWL  143 (198)
T ss_pred             ChhhcCHHHHHHHHHHHHHh
Confidence            77999999999999999974

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.94  E-value=1.5e-26  Score=207.44  Aligned_cols=147  Identities=30%  Similarity=0.393  Sum_probs=113.4

Q ss_pred             cEEEecceeeeCCC---ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684         179 VLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV  255 (356)
Q Consensus       179 ~l~~~~l~~~~~~~---~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv  255 (356)
                      +++++|+++.|+++   .++++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++....       
T Consensus         1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-------   73 (221)
T TIGR02211         1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLS-------   73 (221)
T ss_pred             CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcC-------
Confidence            47899999999532   46999999999999999999999999999999999999999999999987652100       


Q ss_pred             cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcC
Q psy2684         256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFG  328 (356)
Q Consensus       256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~  328 (356)
                                         +  .......+..++|++|++  .+++..|+.+++...   ....    ...+.++++.+|
T Consensus        74 -------------------~--~~~~~~~~~~i~~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~  130 (221)
T TIGR02211        74 -------------------S--NERAKLRNKKLGFIYQFH--HLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVG  130 (221)
T ss_pred             -------------------H--hHHHHHHHhcEEEEeccc--ccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence                               0  000000124699999986  467788999987532   1222    234678899999


Q ss_pred             CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         329 LPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       329 l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +.+.... ++.+|||||||||+||++++
T Consensus       131 l~~~~~~-~~~~LS~G~~qrv~laral~  157 (221)
T TIGR02211       131 LEHRINH-RPSELSGGERQRVAIARALV  157 (221)
T ss_pred             ChhhhhC-ChhhCCHHHHHHHHHHHHHh
Confidence            9876554 67999999999999999974

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.94  E-value=6.8e-27  Score=212.66  Aligned_cols=146  Identities=32%  Similarity=0.432  Sum_probs=113.1

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      +++++|+++.|+++..+++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++....          
T Consensus         1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~----------   70 (243)
T TIGR02315         1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLR----------   70 (243)
T ss_pred             CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCC----------
Confidence            4789999999942567999999999999999999999999999999999999999999999987652100          


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-----------CC----CHHHHHHH
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-----------NL----PYEKSRRQ  323 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-----------~~----~~~~~~~~  323 (356)
                                      +  ... ...+..++|++|++  .+++..|+.+++....           +.    ...++.++
T Consensus        71 ----------------~--~~~-~~~~~~i~~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (243)
T TIGR02315        71 ----------------G--KKL-RKLRRRIGMIFQHY--NLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSA  129 (243)
T ss_pred             ----------------H--HHH-HHHHhheEEEcCCC--cccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHH
Confidence                            0  000 00134699999986  3677889998874311           01    12346778


Q ss_pred             HhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         324 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       324 L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ++.+|+....+. ++.+|||||||||+||++++
T Consensus       130 l~~~~l~~~~~~-~~~~LSgG~~qrv~la~al~  161 (243)
T TIGR02315       130 LERVGLADKAYQ-RADQLSGGQQQRVAIARALA  161 (243)
T ss_pred             HHHcCcHhhhcC-CcccCCHHHHHHHHHHHHHh
Confidence            999999865554 67999999999999999974

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.94  E-value=8.5e-27  Score=208.87  Aligned_cols=141  Identities=32%  Similarity=0.459  Sum_probs=112.3

Q ss_pred             EEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         180 LGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       180 l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      ++++|+++.|+++ +++|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...           
T Consensus         1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-----------   69 (220)
T cd03263           1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-----------   69 (220)
T ss_pred             CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-----------
Confidence            4689999999432 6799999999999999999999999999999999999999999999998764200           


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcCCCC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPS  331 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~l~~  331 (356)
                                            ....+.+++|++|++  .+++..|+.+++...   .+...    ..+.++++.+++..
T Consensus        70 ----------------------~~~~~~~i~~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  125 (220)
T cd03263          70 ----------------------RKAARQSLGYCPQFD--ALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTD  125 (220)
T ss_pred             ----------------------hHHHhhhEEEecCcC--CccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH
Confidence                                  001134699999986  467788999887532   22222    34667899999976


Q ss_pred             ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         332 YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       332 ~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ..+. ++.+|||||||||+||++++
T Consensus       126 ~~~~-~~~~LS~G~~qrv~la~al~  149 (220)
T cd03263         126 KANK-RARTLSGGMKRKLSLAIALI  149 (220)
T ss_pred             HHhC-hhhhCCHHHHHHHHHHHHHh
Confidence            5554 67999999999999999874

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.94  E-value=1.7e-26  Score=216.32  Aligned_cols=141  Identities=28%  Similarity=0.455  Sum_probs=115.9

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      +++++|+++.| ++..+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...           
T Consensus         2 ~l~~~~l~~~~-~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~-----------   69 (301)
T TIGR03522         2 SIRVSSLTKLY-GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQN-----------   69 (301)
T ss_pred             EEEEEEEEEEE-CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC-----------
Confidence            37899999999 567799999999999999999999999999999999999999999999998765210           


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHH---hcCCC----HHHHHHHHhhcCCCC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK---LFNLP----YEKSRRQLGMFGLPS  331 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~---~~~~~----~~~~~~~L~~~~l~~  331 (356)
                                            ....+.++||++|++  .+++..|+.+++..   .++.+    ...+.++++.||+.+
T Consensus        70 ----------------------~~~~~~~ig~~~q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~  125 (301)
T TIGR03522        70 ----------------------PKEVQRNIGYLPEHN--PLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRP  125 (301)
T ss_pred             ----------------------hHHHHhceEEecCCC--CCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch
Confidence                                  001134699999986  47888999998753   22333    245678899999987


Q ss_pred             ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         332 YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       332 ~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ..++ ++..|||||||||+||++++
T Consensus       126 ~~~~-~~~~LS~G~~qrv~la~al~  149 (301)
T TIGR03522       126 EQHK-KIGQLSKGYRQRVGLAQALI  149 (301)
T ss_pred             HhcC-chhhCCHHHHHHHHHHHHHh
Confidence            6654 67999999999999999974

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.93  E-value=1.7e-26  Score=208.54  Aligned_cols=142  Identities=28%  Similarity=0.457  Sum_probs=112.2

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG  259 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG  259 (356)
                      ++++|+++.| +++.+++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...            
T Consensus         1 l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~------------   67 (232)
T cd03218           1 LRAENLSKRY-GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKL------------   67 (232)
T ss_pred             CeEEEEEEEe-CCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccC------------
Confidence            4689999999 456799999999999999999999999999999999999999999999998764210            


Q ss_pred             CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCCCCc
Q psy2684         260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSY  332 (356)
Q Consensus       260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l~~~  332 (356)
                                         ......+..++|++|++  .+++..|+.+++...   ....    ...+.++++.+++...
T Consensus        68 -------------------~~~~~~~~~i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~  126 (232)
T cd03218          68 -------------------PMHKRARLGIGYLPQEA--SIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHL  126 (232)
T ss_pred             -------------------CHhHHHhccEEEecCCc--cccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh
Confidence                               00000123589999986  477788999887532   2222    1345678999999875


Q ss_pred             cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         333 AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       333 ~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ... ++.+|||||||||+||++++
T Consensus       127 ~~~-~~~~LS~G~~qrl~la~al~  149 (232)
T cd03218         127 RKS-KASSLSGGERRRVEIARALA  149 (232)
T ss_pred             hhC-ChhhCCHHHHHHHHHHHHHh
Confidence            554 67999999999999999974

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.93  E-value=2.4e-26  Score=210.83  Aligned_cols=142  Identities=32%  Similarity=0.374  Sum_probs=112.7

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      +++++|+++.| +++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...           
T Consensus         2 ~l~~~~l~~~~-~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~-----------   69 (258)
T PRK13548          2 MLEARNLSVRL-GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADW-----------   69 (258)
T ss_pred             eEEEEeEEEEe-CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccC-----------
Confidence            58899999999 456799999999999999999999999999999999999999999999998654200           


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CC----CHHHHHHHHhhcCCCC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NL----PYEKSRRQLGMFGLPS  331 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~----~~~~~~~~L~~~~l~~  331 (356)
                                          . ....+..++|++|++.  +++..|+.+++....   ..    ....+.++++.+|+.+
T Consensus        70 --------------------~-~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  126 (258)
T PRK13548         70 --------------------S-PAELARRRAVLPQHSS--LSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAH  126 (258)
T ss_pred             --------------------C-HHHhhhheEEEccCCc--CCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHh
Confidence                                0 0001236899999863  556789999875421   11    1234677899999986


Q ss_pred             ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         332 YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       332 ~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .... ++.+|||||||||+||++++
T Consensus       127 ~~~~-~~~~LSgGe~qrv~la~al~  150 (258)
T PRK13548        127 LAGR-DYPQLSGGEQQRVQLARVLA  150 (258)
T ss_pred             HhcC-CcccCCHHHHHHHHHHHHHh
Confidence            5554 67999999999999999974

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=1.5e-26  Score=215.50  Aligned_cols=149  Identities=29%  Similarity=0.393  Sum_probs=113.2

Q ss_pred             cEEEecceeeeCCC----ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeee
Q psy2684         179 VLGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVAL  254 (356)
Q Consensus       179 ~l~~~~l~~~~~~~----~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ial  254 (356)
                      |++++|+++.|+++    +.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|+++|.++....      
T Consensus         1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~------   74 (288)
T PRK13643          1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTS------   74 (288)
T ss_pred             CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECcccc------
Confidence            47899999999533    25999999999999999999999999999999999999999999999988753100      


Q ss_pred             ecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhc
Q psy2684         255 VGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMF  327 (356)
Q Consensus       255 vG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~  327 (356)
                             +               .......+..+||++|++...++. .|+.+++...   .+.+.    ..+.++++.+
T Consensus        75 -------~---------------~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  131 (288)
T PRK13643         75 -------K---------------QKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMV  131 (288)
T ss_pred             -------c---------------cccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHc
Confidence                   0               000001134799999997545665 5888887532   22332    2456789999


Q ss_pred             CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         328 GLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       328 ~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ++.....++++..|||||||||+||++++
T Consensus       132 ~L~~~~~~~~~~~LSgGqkqrvaiA~aL~  160 (288)
T PRK13643        132 GLADEFWEKSPFELSGGQMRRVAIAGILA  160 (288)
T ss_pred             CCChhhccCCcccCCHHHHHHHHHHHHHH
Confidence            99643334578999999999999999974

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.93  E-value=7.4e-27  Score=208.36  Aligned_cols=145  Identities=29%  Similarity=0.406  Sum_probs=112.9

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG  259 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG  259 (356)
                      ++++|+++.|++++.+++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++....           
T Consensus         1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~-----------   69 (214)
T cd03292           1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLR-----------   69 (214)
T ss_pred             CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCC-----------
Confidence            468999999954457999999999999999999999999999999999999999999999987652100           


Q ss_pred             CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCCCCc
Q psy2684         260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSY  332 (356)
Q Consensus       260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l~~~  332 (356)
                                     +  .. ....+..++|++|++  .+++..|+.+++...   .+..    .+.+.++++.+|+.+.
T Consensus        70 ---------------~--~~-~~~~~~~i~~v~q~~--~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~  129 (214)
T cd03292          70 ---------------G--RA-IPYLRRKIGVVFQDF--RLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHK  129 (214)
T ss_pred             ---------------H--HH-HHHHHHheEEEecCc--hhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH
Confidence                           0  00 001124699999987  477888999987532   1222    2346678999999876


Q ss_pred             cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         333 AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       333 ~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .+. ++.+||||||||++||++++
T Consensus       130 ~~~-~~~~LS~G~~qrv~laral~  152 (214)
T cd03292         130 HRA-LPAELSGGEQQRVAIARAIV  152 (214)
T ss_pred             hhC-ChhhcCHHHHHHHHHHHHHH
Confidence            554 67999999999999999974

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.93  E-value=2e-26  Score=212.41  Aligned_cols=147  Identities=22%  Similarity=0.301  Sum_probs=112.6

Q ss_pred             CcEEEecceeeeCC--------CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcC
Q psy2684         178 PVLGLHDVTFGYPG--------GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDME  249 (356)
Q Consensus       178 ~~l~~~~l~~~~~~--------~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~  249 (356)
                      ++++++|+++.|++        +.++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...  
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~--   80 (267)
T PRK15112          3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFG--   80 (267)
T ss_pred             ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCC--
Confidence            57999999999942        24699999999999999999999999999999999999999999999998765210  


Q ss_pred             CeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---c-CCC----HHHHH
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---F-NLP----YEKSR  321 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~-~~~----~~~~~  321 (356)
                                                   .. ...+..++|++|++...+++..++.+++...   . ...    .+.+.
T Consensus        81 -----------------------------~~-~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~  130 (267)
T PRK15112         81 -----------------------------DY-SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQII  130 (267)
T ss_pred             -----------------------------ch-hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHH
Confidence                                         00 0112369999998743456677887776421   1 122    23467


Q ss_pred             HHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         322 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       322 ~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ++++.+|+.....++++.+|||||||||+||++++
T Consensus       131 ~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~  165 (267)
T PRK15112        131 ETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALI  165 (267)
T ss_pred             HHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHH
Confidence            78999999533334467999999999999999874

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.93  E-value=3e-26  Score=206.33  Aligned_cols=149  Identities=28%  Similarity=0.356  Sum_probs=111.1

Q ss_pred             cEEEecceeeeCCC---ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684         179 VLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV  255 (356)
Q Consensus       179 ~l~~~~l~~~~~~~---~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv  255 (356)
                      +++++|+++.|++.   ..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++....       
T Consensus         1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-------   73 (228)
T cd03257           1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLS-------   73 (228)
T ss_pred             CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccc-------
Confidence            47899999999433   27999999999999999999999999999999999999999999999987652100       


Q ss_pred             cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC--CHH---H-HHHHHhh
Q psy2684         256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL--PYE---K-SRRQLGM  326 (356)
Q Consensus       256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~--~~~---~-~~~~L~~  326 (356)
                                         +   ......+..++|++|++...+++..|+.+++...   ...  ...   . +.++++.
T Consensus        74 -------------------~---~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~  131 (228)
T cd03257          74 -------------------R---RLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVG  131 (228)
T ss_pred             -------------------h---hhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHH
Confidence                               0   0000123469999999743466778998887432   111  111   1 2367899


Q ss_pred             cCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         327 FGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       327 ~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +++......+++.+|||||||||+||++++
T Consensus       132 ~~l~~~~~~~~~~~LS~G~~qrv~laral~  161 (228)
T cd03257         132 VGLPEEVLNRYPHELSGGQRQRVAIARALA  161 (228)
T ss_pred             CCCChhHhhCCchhcCHHHHHHHHHHHHHh
Confidence            999532233477999999999999999974

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.93  E-value=2.3e-26  Score=206.78  Aligned_cols=144  Identities=29%  Similarity=0.424  Sum_probs=112.8

Q ss_pred             CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684         177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG  256 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG  256 (356)
                      +++++++|+++.| +++.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...         
T Consensus         5 ~~~i~~~~l~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~---------   74 (225)
T PRK10247          5 SPLLQLQNVGYLA-GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTL---------   74 (225)
T ss_pred             CceEEEeccEEee-CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcC---------
Confidence            4579999999999 566799999999999999999999999999999999999999999999998664210         


Q ss_pred             CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC--CHHHHHHHHhhcCCCC
Q psy2684         257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL--PYEKSRRQLGMFGLPS  331 (356)
Q Consensus       257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~--~~~~~~~~L~~~~l~~  331 (356)
                                       .+      ...+..++|++|++.  +++ .|+.+++...   ...  ....+.++++.+++..
T Consensus        75 -----------------~~------~~~~~~i~~~~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~  128 (225)
T PRK10247         75 -----------------KP------EIYRQQVSYCAQTPT--LFG-DTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD  128 (225)
T ss_pred             -----------------CH------HHHHhccEEEecccc--ccc-ccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh
Confidence                             00      001246899999863  555 4898887532   111  2345678999999964


Q ss_pred             ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         332 YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       332 ~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ....+++.+|||||+|||+||++++
T Consensus       129 ~~~~~~~~~LS~G~~qrv~laral~  153 (225)
T PRK10247        129 TILTKNIAELSGGEKQRISLIRNLQ  153 (225)
T ss_pred             HHhcCCcccCCHHHHHHHHHHHHHh
Confidence            2233578999999999999999974

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.93  E-value=1.3e-26  Score=208.77  Aligned_cols=143  Identities=27%  Similarity=0.330  Sum_probs=111.2

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccc-----ccCCCceeEeeeccccCcCCeeee
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL-----TPNKGKVLLEKVNFGLDMESRVAL  254 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~-----~p~~G~i~~~g~~~~~~~~~~ial  254 (356)
                      ++++|+++.| +++.+|+++||+|.+|++++|+||||||||||+++|+|++     +|++|+|.++|.++....      
T Consensus         1 i~~~~l~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~------   73 (227)
T cd03260           1 IELRDLNVYY-GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLD------   73 (227)
T ss_pred             CEEEEEEEEc-CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcc------
Confidence            4689999999 5567999999999999999999999999999999999999     999999999987652100      


Q ss_pred             ecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC-C----HHHHHHHHhh
Q psy2684         255 VGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-P----YEKSRRQLGM  326 (356)
Q Consensus       255 vG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~-~----~~~~~~~L~~  326 (356)
                                          +   . ....+.+++|++|++.  ++ ..|+.+++...   .+. .    ...+.++++.
T Consensus        74 --------------------~---~-~~~~~~~i~~~~q~~~--~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~  126 (227)
T cd03260          74 --------------------V---D-VLELRRRVGMVFQKPN--PF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRK  126 (227)
T ss_pred             --------------------h---H-HHHHHhhEEEEecCch--hc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHH
Confidence                                0   0 0011346999999873  55 68999887532   121 1    2346778999


Q ss_pred             cCCCCccccCC-CCCCChHHHHHHHHHHHcC
Q psy2684         327 FGLPSYAHTIP-IRDLSGGQKARVALAELTL  356 (356)
Q Consensus       327 ~~l~~~~~~~~-~~~LSGGqkqRvalA~~~l  356 (356)
                      +|+.+.....+ +.+|||||||||+||++++
T Consensus       127 ~~l~~~~~~~~~~~~LSgG~~qrv~la~al~  157 (227)
T cd03260         127 AALWDEVKDRLHALGLSGGQQQRLCLARALA  157 (227)
T ss_pred             cCCChHHhccCCcccCCHHHHHHHHHHHHHh
Confidence            99987655433 5899999999999999974

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=1.7e-26  Score=218.37  Aligned_cols=150  Identities=18%  Similarity=0.186  Sum_probs=113.9

Q ss_pred             cEEEecceeeeCCC---ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc----cCCCceeEeeeccccCcCCe
Q psy2684         179 VLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT----PNKGKVLLEKVNFGLDMESR  251 (356)
Q Consensus       179 ~l~~~~l~~~~~~~---~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~----p~~G~i~~~g~~~~~~~~~~  251 (356)
                      +|+++|+++.|+..   ..+|+||||+|.+||+++|+|+||||||||+++|+|+++    |++|+|.++|.++....   
T Consensus         3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~---   79 (326)
T PRK11022          3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRIS---   79 (326)
T ss_pred             eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCC---
Confidence            68999999999532   369999999999999999999999999999999999998    48999999998763100   


Q ss_pred             eeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh----cCCC----HHHHHHH
Q psy2684         252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLP----YEKSRRQ  323 (356)
Q Consensus       252 ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~----~~~~----~~~~~~~  323 (356)
                                               ........+..++|+||++...+++.+++.+++...    .+..    .+.+.++
T Consensus        80 -------------------------~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~  134 (326)
T PRK11022         80 -------------------------EKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDL  134 (326)
T ss_pred             -------------------------HHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence                                     000011112469999999865688888887665332    1222    2346788


Q ss_pred             HhhcCCCCc--cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         324 LGMFGLPSY--AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       324 L~~~~l~~~--~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      |+.+|+.+.  ..++++++|||||+|||+||++++
T Consensus       135 L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~  169 (326)
T PRK11022        135 LNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIA  169 (326)
T ss_pred             HHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHH
Confidence            999999742  223467999999999999999974

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.93  E-value=2.7e-26  Score=208.65  Aligned_cols=144  Identities=25%  Similarity=0.365  Sum_probs=114.2

Q ss_pred             CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      ++++++|+++.| +++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...          
T Consensus         1 ~~i~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~----------   69 (242)
T TIGR03411         1 PILYLEGLSVSF-DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGL----------   69 (242)
T ss_pred             CeEEEEeeEEEc-CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCC----------
Confidence            368999999999 456799999999999999999999999999999999999999999999998764210          


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC-----------C----CHHHHHH
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN-----------L----PYEKSRR  322 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~-----------~----~~~~~~~  322 (356)
                                           ......+..++|++|++  .+++..|+.+++.....           .    ....+.+
T Consensus        70 ---------------------~~~~~~~~~i~~~~q~~--~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (242)
T TIGR03411        70 ---------------------PEHQIARAGIGRKFQKP--TVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEE  126 (242)
T ss_pred             ---------------------CHHHHHhcCeeEecccc--ccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHH
Confidence                                 00000123599999986  47888899998754211           0    1234677


Q ss_pred             HHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         323 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       323 ~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +++.+|+.+.... ++.+|||||+|||+||++++
T Consensus       127 ~l~~~~l~~~~~~-~~~~LS~Ge~qrv~laral~  159 (242)
T TIGR03411       127 VLETIGLADEADR-LAGLLSHGQKQWLEIGMLLM  159 (242)
T ss_pred             HHHHcCCchhhcC-ChhhCCHHHHHHHHHHHHHh
Confidence            8999999876554 67999999999999999974

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=2.2e-26  Score=214.23  Aligned_cols=145  Identities=30%  Similarity=0.444  Sum_probs=112.4

Q ss_pred             EEEecceeeeCCC----ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684         180 LGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV  255 (356)
Q Consensus       180 l~~~~l~~~~~~~----~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv  255 (356)
                      ++++|+++.|++.    +.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++....       
T Consensus         3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-------   75 (287)
T PRK13637          3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKK-------   75 (287)
T ss_pred             EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcC-------
Confidence            7899999999532    36999999999999999999999999999999999999999999999987753100       


Q ss_pred             cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcC
Q psy2684         256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFG  328 (356)
Q Consensus       256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~  328 (356)
                                           ..  ....+.++||++|++...++ ..|+.+++...   .+.+.    ..+.++++.+|
T Consensus        76 ---------------------~~--~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g  131 (287)
T PRK13637         76 ---------------------VK--LSDIRKKVGLVFQYPEYQLF-EETIEKDIAFGPINLGLSEEEIENRVKRAMNIVG  131 (287)
T ss_pred             ---------------------cc--HHHHhhceEEEecCchhccc-cccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcC
Confidence                                 00  00113579999999743444 46888887532   23332    34677899999


Q ss_pred             CC--CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         329 LP--SYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       329 l~--~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +.  +.. ++++.+|||||||||+||++++
T Consensus       132 L~~~~~~-~~~~~~LSgGq~qrv~iAraL~  160 (287)
T PRK13637        132 LDYEDYK-DKSPFELSGGQKRRVAIAGVVA  160 (287)
T ss_pred             CCchhhc-cCCcccCCHHHHHHHHHHHHHH
Confidence            97  434 4577999999999999999974

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.93  E-value=1.4e-26  Score=210.25  Aligned_cols=145  Identities=30%  Similarity=0.420  Sum_probs=111.7

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG  259 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG  259 (356)
                      ++++|+++.|++++.+++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++....           
T Consensus         1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-----------   69 (241)
T cd03256           1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLK-----------   69 (241)
T ss_pred             CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccC-----------
Confidence            468999999943267999999999999999999999999999999999999999999999987653100           


Q ss_pred             CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-----------CC----CHHHHHHHH
Q psy2684         260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-----------NL----PYEKSRRQL  324 (356)
Q Consensus       260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-----------~~----~~~~~~~~L  324 (356)
                                     +  .. ....+..++|++|++  .+++..|+.+++....           +.    ..+.+.+++
T Consensus        70 ---------------~--~~-~~~~~~~i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  129 (241)
T cd03256          70 ---------------G--KA-LRQLRRQIGMIFQQF--NLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAAL  129 (241)
T ss_pred             ---------------H--hH-HHHHHhccEEEcccC--cccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHH
Confidence                           0  00 000124689999986  3677889998874311           11    123466789


Q ss_pred             hhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         325 GMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       325 ~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +.+++...... ++.+|||||||||+||++++
T Consensus       130 ~~~~l~~~~~~-~~~~LS~G~~qrv~la~al~  160 (241)
T cd03256         130 ERVGLLDKAYQ-RADQLSGGQQQRVAIARALM  160 (241)
T ss_pred             HHcCChhhhCC-CcccCCHHHHHHHHHHHHHh
Confidence            99999865554 67999999999999999874

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.93  E-value=1.3e-26  Score=206.36  Aligned_cols=141  Identities=34%  Similarity=0.496  Sum_probs=109.0

Q ss_pred             EecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCC
Q psy2684         182 LHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGI  260 (356)
Q Consensus       182 ~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~  260 (356)
                      ++|+++.|++. +.+++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...             
T Consensus         2 ~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~-------------   68 (211)
T cd03225           2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKL-------------   68 (211)
T ss_pred             ceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccC-------------
Confidence            67899999431 5799999999999999999999999999999999999999999999998765210             


Q ss_pred             chhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCCCCcc
Q psy2684         261 GKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYA  333 (356)
Q Consensus       261 GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l~~~~  333 (356)
                                        . ....+..++|++|++. ..++..|+.+++...   .+..    ...+.++++.+++....
T Consensus        69 ------------------~-~~~~~~~i~~~~q~~~-~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~  128 (211)
T cd03225          69 ------------------S-LKELRRKVGLVFQNPD-DQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLR  128 (211)
T ss_pred             ------------------C-HHHHHhhceEEecChh-hhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhh
Confidence                              0 0001246899999863 224567898887532   1222    23466789999998655


Q ss_pred             ccCCCCCCChHHHHHHHHHHHcC
Q psy2684         334 HTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       334 ~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      . +++.+|||||||||+||++++
T Consensus       129 ~-~~~~~LSgG~~qrv~laral~  150 (211)
T cd03225         129 D-RSPFTLSGGQKQRVAIAGVLA  150 (211)
T ss_pred             c-CCcccCCHHHHHHHHHHHHHh
Confidence            4 467999999999999999974

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.93  E-value=1.5e-26  Score=206.13  Aligned_cols=143  Identities=25%  Similarity=0.384  Sum_probs=112.4

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG  259 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG  259 (356)
                      ++++|+++.| ++..+++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...            
T Consensus         1 l~~~~l~~~~-~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~------------   67 (213)
T cd03262           1 IEIKNLHKSF-GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDD------------   67 (213)
T ss_pred             CEEEEEEEEE-CCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCcc------------
Confidence            4689999999 456799999999999999999999999999999999999999999999998765200            


Q ss_pred             CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh----cCCCH----HHHHHHHhhcCCCC
Q psy2684         260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLPY----EKSRRQLGMFGLPS  331 (356)
Q Consensus       260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~----~~~~~----~~~~~~L~~~~l~~  331 (356)
                                        .......+..++|++|++  .+++..|+.+++...    .+...    ..+.++++.+|+.+
T Consensus        68 ------------------~~~~~~~~~~i~~~~q~~--~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  127 (213)
T cd03262          68 ------------------KKNINELRQKVGMVFQQF--NLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLAD  127 (213)
T ss_pred             ------------------chhHHHHHhcceEEeccc--ccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHh
Confidence                              000001134699999987  367788999887432    12222    34567899999987


Q ss_pred             ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         332 YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       332 ~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .... ++.+|||||+|||+||++++
T Consensus       128 ~~~~-~~~~LS~G~~qrv~la~al~  151 (213)
T cd03262         128 KADA-YPAQLSGGQQQRVAIARALA  151 (213)
T ss_pred             Hhhh-CccccCHHHHHHHHHHHHHh
Confidence            6554 67999999999999999874

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=2.5e-26  Score=221.52  Aligned_cols=145  Identities=28%  Similarity=0.362  Sum_probs=111.3

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG  259 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG  259 (356)
                      ++.+++...| +...+++++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++....           
T Consensus        29 ~~~~~~~~~~-~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~-----------   96 (400)
T PRK10070         29 LSKEQILEKT-GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKIS-----------   96 (400)
T ss_pred             ccHHHHHhhc-CCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCC-----------
Confidence            4555666666 4445899999999999999999999999999999999999999999999988763100           


Q ss_pred             CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCCCCc
Q psy2684         260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSY  332 (356)
Q Consensus       260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l~~~  332 (356)
                                       ........+.++||++|++  .+++..|+.+++...   .+..    .+.+.++++.+|+.+.
T Consensus        97 -----------------~~~l~~~~~~~igyv~Q~~--~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~  157 (400)
T PRK10070         97 -----------------DAELREVRRKKIAMVFQSF--ALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENY  157 (400)
T ss_pred             -----------------HHHHHHHHhCCEEEEECCC--cCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChh
Confidence                             0000001124699999986  478889999988542   2222    2346778999999876


Q ss_pred             cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         333 AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       333 ~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .+. ++.+|||||||||+||++++
T Consensus       158 ~~~-~~~~LSgGq~QRv~LArAL~  180 (400)
T PRK10070        158 AHS-YPDELSGGMRQRVGLARALA  180 (400)
T ss_pred             hhc-CcccCCHHHHHHHHHHHHHh
Confidence            654 67999999999999999974

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=2e-26  Score=218.34  Aligned_cols=151  Identities=18%  Similarity=0.196  Sum_probs=114.7

Q ss_pred             CcEEEecceeeeCC---CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc----cCCCceeEeeeccccCcCC
Q psy2684         178 PVLGLHDVTFGYPG---GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT----PNKGKVLLEKVNFGLDMES  250 (356)
Q Consensus       178 ~~l~~~~l~~~~~~---~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~----p~~G~i~~~g~~~~~~~~~  250 (356)
                      ++|+++|+++.|+.   ...+++++||+|.+||+++|+|+||||||||+++|+|+++    |++|+|.|+|.++..... 
T Consensus         2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~-   80 (330)
T PRK15093          2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSP-   80 (330)
T ss_pred             CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCH-
Confidence            37899999999942   2469999999999999999999999999999999999997    589999999887531000 


Q ss_pred             eeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---c---C---CC----H
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---F---N---LP----Y  317 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~---~---~~----~  317 (356)
                                                 .......+..|+|+||++...+++.+|+.+++...   .   +   ..    .
T Consensus        81 ---------------------------~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~  133 (330)
T PRK15093         81 ---------------------------RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRK  133 (330)
T ss_pred             ---------------------------HHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHH
Confidence                                       00001112469999999865678888988876531   1   1   01    2


Q ss_pred             HHHHHHHhhcCCCCcc--ccCCCCCCChHHHHHHHHHHHcC
Q psy2684         318 EKSRRQLGMFGLPSYA--HTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       318 ~~~~~~L~~~~l~~~~--~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ..+.++|+.+||.+..  .++++.+|||||||||+||++|+
T Consensus       134 ~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~  174 (330)
T PRK15093        134 RRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALA  174 (330)
T ss_pred             HHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHH
Confidence            3567899999997531  23467999999999999999974

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=2.1e-26  Score=212.15  Aligned_cols=145  Identities=26%  Similarity=0.360  Sum_probs=114.6

Q ss_pred             CCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684         176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV  255 (356)
Q Consensus       176 ~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv  255 (356)
                      .+++++++|+++.| +++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++....       
T Consensus         8 ~~~~l~i~~l~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-------   79 (265)
T PRK10575          8 SDTTFALRNVSFRV-PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWS-------   79 (265)
T ss_pred             CCceEEEeeEEEEE-CCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCC-------
Confidence            34689999999999 4567999999999999999999999999999999999999999999999987652100       


Q ss_pred             cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc----C----C---CHHHHHHHH
Q psy2684         256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF----N----L---PYEKSRRQL  324 (356)
Q Consensus       256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~----~----~---~~~~~~~~L  324 (356)
                                               ....+..++|++|++.  +++..|+.+++....    .    .   ....+.+++
T Consensus        80 -------------------------~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l  132 (265)
T PRK10575         80 -------------------------SKAFARKVAYLPQQLP--AAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAI  132 (265)
T ss_pred             -------------------------HHHHhhheEEeccCCC--CCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHH
Confidence                                     0001236999999863  567789998875321    0    1   123467789


Q ss_pred             hhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         325 GMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       325 ~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +.+++.+.... ++.+|||||||||+||++++
T Consensus       133 ~~~~l~~~~~~-~~~~LSgG~~qrv~laral~  163 (265)
T PRK10575        133 SLVGLKPLAHR-LVDSLSGGERQRAWIAMLVA  163 (265)
T ss_pred             HHcCCHHHhcC-CcccCCHHHHHHHHHHHHHh
Confidence            99999765554 67999999999999999974

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=2.5e-26  Score=208.77  Aligned_cols=143  Identities=24%  Similarity=0.435  Sum_probs=113.8

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      +++++|+++.| +++.+++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...           
T Consensus         3 ~l~~~~l~~~~-~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~-----------   70 (241)
T PRK10895          3 TLTAKNLAKAY-KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLL-----------   70 (241)
T ss_pred             eEEEeCcEEEe-CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----------
Confidence            68999999999 556799999999999999999999999999999999999999999999998765210           


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc----CCC----HHHHHHHHhhcCCC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF----NLP----YEKSRRQLGMFGLP  330 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~----~~~----~~~~~~~L~~~~l~  330 (356)
                                          ......+..++|++|++  .+++..|+.+++....    ...    ...+.++++.+++.
T Consensus        71 --------------------~~~~~~~~~i~~~~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~  128 (241)
T PRK10895         71 --------------------PLHARARRGIGYLPQEA--SIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIE  128 (241)
T ss_pred             --------------------CHHHHHHhCeEEeccCC--cccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCH
Confidence                                00000124699999986  4677789999875421    111    23467789999997


Q ss_pred             CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         331 SYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       331 ~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .... +++.+|||||||||+||++++
T Consensus       129 ~~~~-~~~~~LS~G~~qrv~laral~  153 (241)
T PRK10895        129 HLRD-SMGQSLSGGERRRVEIARALA  153 (241)
T ss_pred             HHhh-cchhhCCHHHHHHHHHHHHHh
Confidence            6554 467999999999999999974

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.93  E-value=3.9e-26  Score=202.73  Aligned_cols=139  Identities=32%  Similarity=0.427  Sum_probs=113.0

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      +++++|+++.| ++..+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++..            
T Consensus         2 ~l~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~------------   68 (207)
T PRK13539          2 MLEGEDLACVR-GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD------------   68 (207)
T ss_pred             EEEEEeEEEEE-CCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc------------
Confidence            58999999999 45679999999999999999999999999999999999999999999998765310            


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCHHHHHHHHhhcCCCCcccc
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPYEKSRRQLGMFGLPSYAHT  335 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~~~~~~~L~~~~l~~~~~~  335 (356)
                                      +   .    .+..++|++|.+  .+++..|+.+++...   .+.....+.++++.+|+.... +
T Consensus        69 ----------------~---~----~~~~~~~~~~~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-~  122 (207)
T PRK13539         69 ----------------P---D----VAEACHYLGHRN--AMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLA-H  122 (207)
T ss_pred             ----------------h---h----hHhhcEEecCCC--cCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHH-c
Confidence                            0   0    123588999875  356778999887432   223345678899999998654 4


Q ss_pred             CCCCCCChHHHHHHHHHHHcC
Q psy2684         336 IPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       336 ~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +++.+||||||||++||++++
T Consensus       123 ~~~~~LS~G~~qrl~la~al~  143 (207)
T PRK13539        123 LPFGYLSAGQKRRVALARLLV  143 (207)
T ss_pred             CChhhcCHHHHHHHHHHHHHh
Confidence            578999999999999999974

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=2.9e-26  Score=208.26  Aligned_cols=142  Identities=25%  Similarity=0.374  Sum_probs=111.4

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      .++++|+++.| ++..+++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...           
T Consensus         3 ~l~~~~l~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~-----------   70 (241)
T PRK14250          3 EIEFKEVSYSS-FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTI-----------   70 (241)
T ss_pred             eEEEEeEEEEe-CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhc-----------
Confidence            47899999999 456799999999999999999999999999999999999999999999998765200           


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCHHHHHHHHhhcCCCCcccc
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPYEKSRRQLGMFGLPSYAHT  335 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~~~~~~~L~~~~l~~~~~~  335 (356)
                                          . ....+..++|++|++.  +++ .++.+++...   .+....++.++++.+++.....+
T Consensus        71 --------------------~-~~~~~~~i~~~~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~  126 (241)
T PRK14250         71 --------------------D-VIDLRRKIGMVFQQPH--LFE-GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYAT  126 (241)
T ss_pred             --------------------C-hHHhhhcEEEEecCch--hch-hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhh
Confidence                                0 0011346999999963  554 5888886532   12223457788999999632333


Q ss_pred             CCCCCCChHHHHHHHHHHHcC
Q psy2684         336 IPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       336 ~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +++.+|||||||||+||++++
T Consensus       127 ~~~~~LS~G~~qrl~la~al~  147 (241)
T PRK14250        127 RDVKNLSGGEAQRVSIARTLA  147 (241)
T ss_pred             CCcccCCHHHHHHHHHHHHHh
Confidence            477999999999999999974

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.93  E-value=2.4e-26  Score=217.51  Aligned_cols=153  Identities=25%  Similarity=0.292  Sum_probs=116.8

Q ss_pred             CCCcEEEecceeeeCC---CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccC---CCceeEeeeccccCcC
Q psy2684         176 PPPVLGLHDVTFGYPG---GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN---KGKVLLEKVNFGLDME  249 (356)
Q Consensus       176 ~~~~l~~~~l~~~~~~---~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~---~G~i~~~g~~~~~~~~  249 (356)
                      ..++++++|+++.|..   ...+++++||+|.+||+++|+|+||||||||+++|+|+++|+   +|+|.|+|.++.... 
T Consensus         9 ~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~-   87 (330)
T PRK09473          9 ADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLP-   87 (330)
T ss_pred             CCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCC-
Confidence            3568999999999942   246999999999999999999999999999999999999996   999999998763100 


Q ss_pred             CeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---c-CCCH----HHHH
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---F-NLPY----EKSR  321 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~-~~~~----~~~~  321 (356)
                                                 ........+.+|+|+||++...+++.+++.+++...   . +...    ..+.
T Consensus        88 ---------------------------~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~  140 (330)
T PRK09473         88 ---------------------------EKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESV  140 (330)
T ss_pred             ---------------------------HHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence                                       000001112469999999865688889988876432   2 2222    3466


Q ss_pred             HHHhhcCCCCcc--ccCCCCCCChHHHHHHHHHHHcC
Q psy2684         322 RQLGMFGLPSYA--HTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       322 ~~L~~~~l~~~~--~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ++|+.+|+++..  ..+++++|||||+|||+||++++
T Consensus       141 ~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~  177 (330)
T PRK09473        141 RMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALL  177 (330)
T ss_pred             HHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHH
Confidence            789999997521  23467999999999999999974

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=3e-26  Score=212.93  Aligned_cols=148  Identities=26%  Similarity=0.396  Sum_probs=115.3

Q ss_pred             CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684         177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG  256 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG  256 (356)
                      +++++++|+++.|+++..+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++....        
T Consensus         3 ~~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~--------   74 (283)
T PRK13636          3 DYILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSR--------   74 (283)
T ss_pred             CceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCc--------
Confidence            357999999999954567999999999999999999999999999999999999999999999987652100        


Q ss_pred             CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcCC
Q psy2684         257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGL  329 (356)
Q Consensus       257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~l  329 (356)
                                           .. ....+..+||++|++...++ ..|+.+++...   .+.+.    ..+.++++.+|+
T Consensus        75 ---------------------~~-~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL  131 (283)
T PRK13636         75 ---------------------KG-LMKLRESVGMVFQDPDNQLF-SASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGI  131 (283)
T ss_pred             ---------------------ch-HHHHHhhEEEEecCcchhhc-cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence                                 00 00113469999998743333 46888887532   23332    346778999999


Q ss_pred             CCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         330 PSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       330 ~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .+..+ +++.+||||||||++||++++
T Consensus       132 ~~~~~-~~~~~LS~G~~qrl~laraL~  157 (283)
T PRK13636        132 EHLKD-KPTHCLSFGQKKRVAIAGVLV  157 (283)
T ss_pred             hhhhh-CCcccCCHHHHHHHHHHHHHH
Confidence            87665 478999999999999999974

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.93  E-value=2.9e-26  Score=208.44  Aligned_cols=142  Identities=28%  Similarity=0.490  Sum_probs=112.0

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG  259 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG  259 (356)
                      ++++|+++.|++...+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...            
T Consensus         1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~------------   68 (242)
T cd03295           1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQ------------   68 (242)
T ss_pred             CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcC------------
Confidence            46899999994325799999999999999999999999999999999999999999999998765210            


Q ss_pred             CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCCCC-
Q psy2684         260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPS-  331 (356)
Q Consensus       260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l~~-  331 (356)
                                    .+      ...+..++|++|++  .+++..|+.+++...   .+..    ...+.++++.+++.. 
T Consensus        69 --------------~~------~~~~~~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~  126 (242)
T cd03295          69 --------------DP------VELRRKIGYVIQQI--GLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPA  126 (242)
T ss_pred             --------------Ch------HHhhcceEEEccCc--cccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcH
Confidence                          00      01124689999986  477788999987532   2222    234678899999985 


Q ss_pred             -ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         332 -YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       332 -~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                       ... +++.+|||||||||+||++++
T Consensus       127 ~~~~-~~~~~LS~G~~qrv~laral~  151 (242)
T cd03295         127 EFAD-RYPHELSGGQQQRVGVARALA  151 (242)
T ss_pred             HHHh-cChhhCCHHHHHHHHHHHHHh
Confidence             444 477999999999999999974

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=3.1e-26  Score=209.80  Aligned_cols=145  Identities=27%  Similarity=0.417  Sum_probs=114.2

Q ss_pred             CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684         177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG  256 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG  256 (356)
                      +++++++|+++.| ++..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...         
T Consensus         3 ~~~l~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~---------   72 (255)
T PRK11300          3 QPLLSVSGLMMRF-GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGL---------   72 (255)
T ss_pred             CceEEEeeEEEEE-CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCC---------
Confidence            3579999999999 566799999999999999999999999999999999999999999999998765310         


Q ss_pred             CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-------------C---C--C--
Q psy2684         257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-------------N---L--P--  316 (356)
Q Consensus       257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-------------~---~--~--  316 (356)
                                            ......+..++|++|++  .+++..|+.+++....             .   .  .  
T Consensus        73 ----------------------~~~~~~~~~i~~~~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (255)
T PRK11300         73 ----------------------PGHQIARMGVVRTFQHV--RLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAES  128 (255)
T ss_pred             ----------------------CHHHHHhcCeEEeccCc--ccCCCCcHHHHHHHhhhccccchhhhhhccccccccchh
Confidence                                  00000123589999986  4778889999875321             0   0  0  


Q ss_pred             --HHHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         317 --YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       317 --~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                        ...+.++++.+|+...... ++.+|||||||||+||++++
T Consensus       129 ~~~~~~~~~l~~~gl~~~~~~-~~~~LS~G~~qrv~la~al~  169 (255)
T PRK11300        129 EALDRAATWLERVGLLEHANR-QAGNLAYGQQRRLEIARCMV  169 (255)
T ss_pred             HHHHHHHHHHHhCChhhhhhC-ChhhCCHHHHHHHHHHHHHh
Confidence              1245677899999776554 77999999999999999974

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=1.9e-26  Score=213.80  Aligned_cols=145  Identities=26%  Similarity=0.416  Sum_probs=114.2

Q ss_pred             CcEEEecceeeeCCC--ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684         178 PVLGLHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV  255 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~--~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv  255 (356)
                      ++++++|+++.|++.  ..+|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++...        
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~--------   74 (279)
T PRK13650          3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEE--------   74 (279)
T ss_pred             ceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcC--------
Confidence            368999999999532  4599999999999999999999999999999999999999999999998765210        


Q ss_pred             cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcC
Q psy2684         256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFG  328 (356)
Q Consensus       256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~  328 (356)
                                             .. ...+.++||++|++. .++...|+.+++...   .+.+.    ..+.++++.+|
T Consensus        75 -----------------------~~-~~~~~~i~~v~q~~~-~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~g  129 (279)
T PRK13650         75 -----------------------NV-WDIRHKIGMVFQNPD-NQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVG  129 (279)
T ss_pred             -----------------------cH-HHHHhhceEEEcChH-HhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCC
Confidence                                   00 011246999999863 245567998887532   12332    34677899999


Q ss_pred             CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         329 LPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       329 l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +.+..+. ++.+|||||||||+||++++
T Consensus       130 L~~~~~~-~~~~LSgGq~qrv~lAral~  156 (279)
T PRK13650        130 MQDFKER-EPARLSGGQKQRVAIAGAVA  156 (279)
T ss_pred             CHhHhhC-CcccCCHHHHHHHHHHHHHH
Confidence            9876654 67999999999999999974

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=2.9e-26  Score=212.58  Aligned_cols=146  Identities=28%  Similarity=0.440  Sum_probs=115.4

Q ss_pred             CCcEEEecceeeeCC-CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684         177 PPVLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV  255 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~-~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv  255 (356)
                      .++++++|+++.|++ .+++|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...        
T Consensus         3 ~~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~--------   74 (279)
T PRK13635          3 EEIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEE--------   74 (279)
T ss_pred             CceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcC--------
Confidence            357999999999953 35699999999999999999999999999999999999999999999998875310        


Q ss_pred             cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcC
Q psy2684         256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFG  328 (356)
Q Consensus       256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~  328 (356)
                                             .. ...+..+||++|++. .++...|+.+++...   .+.+.    ..+.+++..+|
T Consensus        75 -----------------------~~-~~~~~~i~~~~q~~~-~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~g  129 (279)
T PRK13635         75 -----------------------TV-WDVRRQVGMVFQNPD-NQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVG  129 (279)
T ss_pred             -----------------------cH-HHHhhheEEEEeCHH-HhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcC
Confidence                                   00 011246999999873 245567999887532   12232    34677899999


Q ss_pred             CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         329 LPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       329 l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +.+.... ++..|||||||||+||++++
T Consensus       130 L~~~~~~-~~~~LS~G~~qrv~laral~  156 (279)
T PRK13635        130 MEDFLNR-EPHRLSGGQKQRVAIAGVLA  156 (279)
T ss_pred             ChhhhhC-CcccCCHHHHHHHHHHHHHH
Confidence            9876654 67999999999999999974

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=2.9e-26  Score=214.79  Aligned_cols=163  Identities=23%  Similarity=0.291  Sum_probs=113.5

Q ss_pred             cEEEecceeeeCCC----ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeee
Q psy2684         179 VLGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVAL  254 (356)
Q Consensus       179 ~l~~~~l~~~~~~~----~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ial  254 (356)
                      +++++|+++.|+++    ..+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|+++|.+.....      
T Consensus         2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~------   75 (305)
T PRK13651          2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKK------   75 (305)
T ss_pred             EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccc------
Confidence            37899999999533    25999999999999999999999999999999999999999999999876542100      


Q ss_pred             ecCCCCchhhHHHHHhCCCCCCcc-----eeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHH
Q psy2684         255 VGPNGIGKSTFLNLLKGELTPNKG-----ELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRR  322 (356)
Q Consensus       255 vG~nG~GKsTll~~l~g~~~~~~g-----~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~  322 (356)
                          ..|  |.-+.+-+. .....     ......+..+||+||++..+++ ..|+.+++...   .+.+.    ..+.+
T Consensus        76 ----~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~  147 (305)
T PRK13651         76 ----KTK--EKEKVLEKL-VIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSMGVSKEEAKKRAAK  147 (305)
T ss_pred             ----ccc--ccccccccc-ccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHcCCCHHHHHHHHHH
Confidence                000  000000000 00000     0000113579999998754555 46898887532   23332    34678


Q ss_pred             HHhhcCCC-CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         323 QLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       323 ~L~~~~l~-~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +++.+||. +... +++.+|||||||||+||++++
T Consensus       148 ~l~~~gL~~~~~~-~~~~~LSgGqkqrvalA~aL~  181 (305)
T PRK13651        148 YIELVGLDESYLQ-RSPFELSGGQKRRVALAGILA  181 (305)
T ss_pred             HHHHcCCChhhhh-CChhhCCHHHHHHHHHHHHHH
Confidence            89999997 4444 578999999999999999974

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.93  E-value=2.7e-26  Score=211.39  Aligned_cols=149  Identities=28%  Similarity=0.306  Sum_probs=113.6

Q ss_pred             cEEEecceeeeCC--------CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCC
Q psy2684         179 VLGLHDVTFGYPG--------GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMES  250 (356)
Q Consensus       179 ~l~~~~l~~~~~~--------~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~  250 (356)
                      +++++|+++.|++        ++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++....  
T Consensus         2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~--   79 (265)
T TIGR02769         2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLD--   79 (265)
T ss_pred             eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccC--
Confidence            5889999999952        357999999999999999999999999999999999999999999999987653100  


Q ss_pred             eeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh----cCCC----HHHHHH
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLP----YEKSRR  322 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~----~~~~----~~~~~~  322 (356)
                                                 .......+..++|++|++...+++..|+.+++...    ....    ...+.+
T Consensus        80 ---------------------------~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~  132 (265)
T TIGR02769        80 ---------------------------RKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAE  132 (265)
T ss_pred             ---------------------------HHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence                                       00000013469999998643466778998876421    1222    235678


Q ss_pred             HHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         323 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       323 ~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +++.+|+.....++++.+|||||||||+||++++
T Consensus       133 ~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~  166 (265)
T TIGR02769       133 LLDMVGLRSEDADKLPRQLSGGQLQRINIARALA  166 (265)
T ss_pred             HHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHh
Confidence            8999999633333477999999999999999974

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.93  E-value=2.2e-26  Score=206.42  Aligned_cols=142  Identities=26%  Similarity=0.358  Sum_probs=109.7

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG  259 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG  259 (356)
                      ++++|+++.| ++.++++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...            
T Consensus         1 l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~------------   67 (222)
T cd03224           1 LEVENLNAGY-GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGL------------   67 (222)
T ss_pred             CEEeeEEeec-CCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCC------------
Confidence            4689999999 456799999999999999999999999999999999999999999999998765210            


Q ss_pred             CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC-C----CHHHHHHHHhhc-CCCCcc
Q psy2684         260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN-L----PYEKSRRQLGMF-GLPSYA  333 (356)
Q Consensus       260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~-~----~~~~~~~~L~~~-~l~~~~  333 (356)
                                         ......+..++|++|++  .+++..|+.+++..... .    ....+.++++.+ ++....
T Consensus        68 -------------------~~~~~~~~~i~~~~q~~--~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~  126 (222)
T cd03224          68 -------------------PPHERARAGIGYVPEGR--RIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERR  126 (222)
T ss_pred             -------------------CHHHHHhcCeEEecccc--ccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhh
Confidence                               00000123599999986  47788899988753211 1    123355677777 466544


Q ss_pred             ccCCCCCCChHHHHHHHHHHHcC
Q psy2684         334 HTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       334 ~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      . +++.+|||||||||+||++++
T Consensus       127 ~-~~~~~LS~G~~qrv~laral~  148 (222)
T cd03224         127 K-QLAGTLSGGEQQMLAIARALM  148 (222)
T ss_pred             h-CchhhCCHHHHHHHHHHHHHh
Confidence            4 467999999999999999974

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=2.4e-26  Score=212.68  Aligned_cols=145  Identities=34%  Similarity=0.479  Sum_probs=112.7

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      +++++|+++.|+++..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...           
T Consensus         1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----------   69 (274)
T PRK13644          1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDF-----------   69 (274)
T ss_pred             CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCcc-----------
Confidence            478999999995445699999999999999999999999999999999999999999999998765210           


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCCCC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPS  331 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l~~  331 (356)
                                          ......+..+||++|++... +...|+.+++...   .+..    .+.+.++++.+|+.+
T Consensus        70 --------------------~~~~~~~~~i~~v~q~~~~~-~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~  128 (274)
T PRK13644         70 --------------------SKLQGIRKLVGIVFQNPETQ-FVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEK  128 (274)
T ss_pred             --------------------ccHHHHHhheEEEEEChhhh-cccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHH
Confidence                                00000124699999987422 3457888887432   1222    234667899999987


Q ss_pred             ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         332 YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       332 ~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ..+. ++..|||||||||+||++++
T Consensus       129 ~~~~-~~~~LS~G~~qrv~laral~  152 (274)
T PRK13644        129 YRHR-SPKTLSGGQGQCVALAGILT  152 (274)
T ss_pred             HhcC-CcccCCHHHHHHHHHHHHHH
Confidence            6654 77999999999999999874

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=1.7e-26  Score=214.91  Aligned_cols=148  Identities=24%  Similarity=0.375  Sum_probs=112.4

Q ss_pred             EEEecceeeeCCC----ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684         180 LGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV  255 (356)
Q Consensus       180 l~~~~l~~~~~~~----~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv  255 (356)
                      ++++|+++.|+++    ..+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++....       
T Consensus         3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~-------   75 (286)
T PRK13646          3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKT-------   75 (286)
T ss_pred             EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECcccc-------
Confidence            7899999999532    36999999999999999999999999999999999999999999999988763100       


Q ss_pred             cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcC
Q psy2684         256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFG  328 (356)
Q Consensus       256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~  328 (356)
                          .+++                 ....+.++||+||++...+++ .|+.+++...   .+.+.    ..+.++++.+|
T Consensus        76 ----~~~~-----------------~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~g  133 (286)
T PRK13646         76 ----KDKY-----------------IRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLG  133 (286)
T ss_pred             ----ccch-----------------HHHHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcC
Confidence                0000                 001134799999987444554 4888887532   12332    34667899999


Q ss_pred             CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         329 LPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       329 l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +......+++.+|||||||||+||++++
T Consensus       134 L~~~~~~~~~~~LSgGq~qrv~laraL~  161 (286)
T PRK13646        134 FSRDVMSQSPFQMSGGQMRKIAIVSILA  161 (286)
T ss_pred             CChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence            9733333477999999999999999974

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=3e-26  Score=213.58  Aligned_cols=148  Identities=29%  Similarity=0.388  Sum_probs=112.8

Q ss_pred             EEEecceeeeCCC----ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684         180 LGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV  255 (356)
Q Consensus       180 l~~~~l~~~~~~~----~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv  255 (356)
                      ++++|+++.|++.    ..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....      
T Consensus         3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~------   76 (290)
T PRK13634          3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKK------   76 (290)
T ss_pred             EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccc------
Confidence            7899999999532    469999999999999999999999999999999999999999999999887531000      


Q ss_pred             cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcC
Q psy2684         256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFG  328 (356)
Q Consensus       256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~  328 (356)
                                           ... ....+.++||++|++...++ ..|+.+++...   .+.+.    ..+.++++.+|
T Consensus        77 ---------------------~~~-~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~g  133 (290)
T PRK13634         77 ---------------------NKK-LKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVG  133 (290)
T ss_pred             ---------------------cch-HHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence                                 000 00113469999999754455 46888887532   22332    34567899999


Q ss_pred             CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         329 LPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       329 l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +.....++++.+|||||||||+||++++
T Consensus       134 L~~~~~~~~~~~LSgGq~qrv~lAraL~  161 (290)
T PRK13634        134 LPEELLARSPFELSGGQMRRVAIAGVLA  161 (290)
T ss_pred             CChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence            9743334578999999999999999974

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.93  E-value=2.9e-26  Score=204.13  Aligned_cols=139  Identities=30%  Similarity=0.465  Sum_probs=111.1

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG  259 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG  259 (356)
                      ++++|+++.| ++..+++++||+|.+| +++|+||||||||||+++|+|+++|++|+|.++|.++...            
T Consensus         1 i~~~~~~~~~-~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~------------   66 (211)
T cd03264           1 LQLENLTKRY-GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQ------------   66 (211)
T ss_pred             CEEEEEEEEE-CCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccc------------
Confidence            4689999999 4567999999999999 9999999999999999999999999999999988654210            


Q ss_pred             CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCCCCc
Q psy2684         260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSY  332 (356)
Q Consensus       260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l~~~  332 (356)
                                           ....+..++|++|++.  +++..|+.+++...   .+..    ...+.++++.+++.+.
T Consensus        67 ---------------------~~~~~~~i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~  123 (211)
T cd03264          67 ---------------------PQKLRRRIGYLPQEFG--VYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDR  123 (211)
T ss_pred             ---------------------hHHHHhheEEecCCCc--ccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHH
Confidence                                 0011346899999873  67788999887432   2222    2346778999999876


Q ss_pred             cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         333 AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       333 ~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .+ +++.+|||||||||+||++++
T Consensus       124 ~~-~~~~~LS~G~~qrv~la~al~  146 (211)
T cd03264         124 AK-KKIGSLSGGMRRRVGIAQALV  146 (211)
T ss_pred             Hh-CchhhCCHHHHHHHHHHHHHh
Confidence            55 467999999999999999974

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.93  E-value=3.2e-26  Score=207.92  Aligned_cols=144  Identities=26%  Similarity=0.378  Sum_probs=113.4

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      +++++|+++.| +++.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++....          
T Consensus         1 ~l~~~~l~~~~-~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~----------   69 (240)
T PRK09493          1 MIEFKNVSKHF-GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPK----------   69 (240)
T ss_pred             CEEEEeEEEEE-CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCC----------
Confidence            47899999999 4567999999999999999999999999999999999999999999999987653100          


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh----cCCC----HHHHHHHHhhcCCC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLP----YEKSRRQLGMFGLP  330 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~----~~~~----~~~~~~~L~~~~l~  330 (356)
                                         .. ....+..++|++|++  .+++..|+.+++...    .+..    ...+.++++.+|+.
T Consensus        70 -------------------~~-~~~~~~~i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~  127 (240)
T PRK09493         70 -------------------VD-ERLIRQEAGMVFQQF--YLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLA  127 (240)
T ss_pred             -------------------hh-HHHHhhceEEEeccc--ccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCh
Confidence                               00 001134699999986  367778998887432    1222    13456789999997


Q ss_pred             CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         331 SYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       331 ~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ...+. ++.+|||||||||+||++++
T Consensus       128 ~~~~~-~~~~LS~G~~qrv~la~al~  152 (240)
T PRK09493        128 ERAHH-YPSELSGGQQQRVAIARALA  152 (240)
T ss_pred             HHHhc-ChhhcCHHHHHHHHHHHHHh
Confidence            66554 67999999999999999974

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.93  E-value=2.3e-26  Score=203.98  Aligned_cols=143  Identities=29%  Similarity=0.366  Sum_probs=110.9

Q ss_pred             EecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCc
Q psy2684         182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIG  261 (356)
Q Consensus       182 ~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~G  261 (356)
                      ++|+++.| +++.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++....             
T Consensus         1 i~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-------------   66 (206)
T TIGR03608         1 LKNISKKF-GDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLN-------------   66 (206)
T ss_pred             CcceEEEE-CCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccc-------------
Confidence            47899999 4567999999999999999999999999999999999999999999999987642000             


Q ss_pred             hhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCCCCccc
Q psy2684         262 KSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAH  334 (356)
Q Consensus       262 KsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l~~~~~  334 (356)
                                     ........+..++|++|++  .+++..|+.+++...   .+..    .+.+.++++.+|+.+..+
T Consensus        67 ---------------~~~~~~~~~~~i~~~~q~~--~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~  129 (206)
T TIGR03608        67 ---------------SKKASKFRREKLGYLFQNF--ALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLK  129 (206)
T ss_pred             ---------------hhhHHHHHHhCeeEEecch--hhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhc
Confidence                           0000001134699999986  467788999887532   1222    244678899999977665


Q ss_pred             cCCCCCCChHHHHHHHHHHHcC
Q psy2684         335 TIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       335 ~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      . ++.+|||||+||++||++++
T Consensus       130 ~-~~~~lS~G~~qr~~laral~  150 (206)
T TIGR03608       130 Q-KIYELSGGEQQRVALARAIL  150 (206)
T ss_pred             C-ChhhCCHHHHHHHHHHHHHH
Confidence            4 67999999999999999974

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.93  E-value=6.4e-26  Score=207.04  Aligned_cols=132  Identities=29%  Similarity=0.414  Sum_probs=107.6

Q ss_pred             CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      ++++++|+++.| ++..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++                
T Consensus         3 ~~l~~~~l~~~~-~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~----------------   65 (251)
T PRK09544          3 SLVSLENVSVSF-GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG----------------   65 (251)
T ss_pred             cEEEEeceEEEE-CCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC----------------
Confidence            478999999999 456799999999999999999999999999999999999999999998752                


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCC--CCHHHHHHHhcCCCHHHHHHHHhhcCCCCcccc
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPD--DTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHT  335 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~--~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~~  335 (356)
                                                 +..++|++|++.  +++.  .++.+++....+....++.++++.+|+.+..+.
T Consensus        66 ---------------------------~~~i~~v~q~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~  116 (251)
T PRK09544         66 ---------------------------KLRIGYVPQKLY--LDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDA  116 (251)
T ss_pred             ---------------------------ccCEEEeccccc--cccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhC
Confidence                                       125899999863  3433  356665432223345667889999999876554


Q ss_pred             CCCCCCChHHHHHHHHHHHcC
Q psy2684         336 IPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       336 ~~~~~LSGGqkqRvalA~~~l  356 (356)
                       ++.+|||||||||+||++++
T Consensus       117 -~~~~LSgGq~qrv~laral~  136 (251)
T PRK09544        117 -PMQKLSGGETQRVLLARALL  136 (251)
T ss_pred             -ChhhCCHHHHHHHHHHHHHh
Confidence             67999999999999999974

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.93  E-value=2.5e-26  Score=218.97  Aligned_cols=137  Identities=29%  Similarity=0.400  Sum_probs=108.5

Q ss_pred             eeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCchhhHHH
Q psy2684         188 GYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLN  267 (356)
Q Consensus       188 ~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~  267 (356)
                      .| +++.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++....                   
T Consensus         2 ~~-~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~-------------------   61 (363)
T TIGR01186         2 KT-GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQS-------------------   61 (363)
T ss_pred             cc-CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCC-------------------
Confidence            45 5667999999999999999999999999999999999999999999999998763100                   


Q ss_pred             HHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCCCCccccCCCCC
Q psy2684         268 LLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRD  340 (356)
Q Consensus       268 ~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~  340 (356)
                               ...+....+..++|++|++  .+++.+|+.+++...   .+.+    .+.+.++++.+||...... ++.+
T Consensus        62 ---------~~~~~~~rr~~i~~v~Q~~--~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~-~p~~  129 (363)
T TIGR01186        62 ---------PVELREVRRKKIGMVFQQF--ALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHR-YPDE  129 (363)
T ss_pred             ---------HHHHHHHHhCcEEEEECCC--cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhC-Chhh
Confidence                     0000001135799999986  588999999987542   2332    2456788999999876655 6799


Q ss_pred             CChHHHHHHHHHHHcC
Q psy2684         341 LSGGQKARVALAELTL  356 (356)
Q Consensus       341 LSGGqkqRvalA~~~l  356 (356)
                      |||||||||+|||+++
T Consensus       130 LSGGq~QRV~lARAL~  145 (363)
T TIGR01186       130 LSGGMQQRVGLARALA  145 (363)
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999999974

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.93  E-value=9.3e-26  Score=202.60  Aligned_cols=137  Identities=24%  Similarity=0.416  Sum_probs=113.2

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG  259 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG  259 (356)
                      ++++|+++.| +++.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++..             
T Consensus         1 l~l~~v~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~-------------   66 (223)
T TIGR03740         1 LETKNLSKRF-GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTR-------------   66 (223)
T ss_pred             CEEEeEEEEE-CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccc-------------
Confidence            4689999999 45679999999999999999999999999999999999999999999998765310             


Q ss_pred             CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCHHHHHHHHhhcCCCCccccC
Q psy2684         260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPYEKSRRQLGMFGLPSYAHTI  336 (356)
Q Consensus       260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~~~~~~~L~~~~l~~~~~~~  336 (356)
                                             .....++|++|++  .+++..|+.+++...   .+.....+.++++.+|+.+..+. 
T Consensus        67 -----------------------~~~~~~~~~~q~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-  120 (223)
T TIGR03740        67 -----------------------KDLHKIGSLIESP--PLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKK-  120 (223)
T ss_pred             -----------------------cccccEEEEcCCC--CccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhh-
Confidence                                   0013689999986  467778999887532   23455678889999999876554 


Q ss_pred             CCCCCChHHHHHHHHHHHcC
Q psy2684         337 PIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       337 ~~~~LSGGqkqRvalA~~~l  356 (356)
                      ++.+|||||+||++||++++
T Consensus       121 ~~~~LS~G~~~rv~laral~  140 (223)
T TIGR03740       121 KAKQFSLGMKQRLGIAIALL  140 (223)
T ss_pred             hHhhCCHHHHHHHHHHHHHh
Confidence            67999999999999999974

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=6.2e-26  Score=209.62  Aligned_cols=146  Identities=28%  Similarity=0.442  Sum_probs=114.6

Q ss_pred             CCcEEEecceeeeC-CCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684         177 PPVLGLHDVTFGYP-GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV  255 (356)
Q Consensus       177 ~~~l~~~~l~~~~~-~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv  255 (356)
                      .++++++|+++.|+ +++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...        
T Consensus         5 ~~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~--------   76 (271)
T PRK13632          5 SVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKE--------   76 (271)
T ss_pred             ceEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcC--------
Confidence            35799999999995 245799999999999999999999999999999999999999999999998765210        


Q ss_pred             cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcC
Q psy2684         256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFG  328 (356)
Q Consensus       256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~  328 (356)
                                             . ....+.+++|++|++. ..++..|+.+++...   .....    ..+.++++.+|
T Consensus        77 -----------------------~-~~~~~~~i~~v~q~~~-~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~  131 (271)
T PRK13632         77 -----------------------N-LKEIRKKIGIIFQNPD-NQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVG  131 (271)
T ss_pred             -----------------------C-HHHHhcceEEEEeCHH-HhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcC
Confidence                                   0 0011346999999863 245567999987532   12222    23567899999


Q ss_pred             CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         329 LPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       329 l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +.+..+. ++.+||||||||++||++++
T Consensus       132 l~~~~~~-~~~~LS~G~~qrl~laral~  158 (271)
T PRK13632        132 MEDYLDK-EPQNLSGGQKQRVAIASVLA  158 (271)
T ss_pred             CHHHhhC-CcccCCHHHHHHHHHHHHHH
Confidence            9876654 67999999999999999974

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.93  E-value=5.6e-26  Score=202.32  Aligned_cols=137  Identities=28%  Similarity=0.411  Sum_probs=109.0

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG  259 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG  259 (356)
                      ++++|+++.|+ ++.  .++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...            
T Consensus         1 i~~~~l~~~~~-~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~------------   65 (211)
T cd03298           1 VRLDKIRFSYG-EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAA------------   65 (211)
T ss_pred             CEEEeEEEEeC-CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcC------------
Confidence            36899999994 433  399999999999999999999999999999999999999999998765210            


Q ss_pred             CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC--C-----CHHHHHHHHhhcCCCCc
Q psy2684         260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN--L-----PYEKSRRQLGMFGLPSY  332 (356)
Q Consensus       260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~--~-----~~~~~~~~L~~~~l~~~  332 (356)
                                           . ..+..++|++|++  .+++..|+.+++.....  .     ....+.++++.+|+.+.
T Consensus        66 ---------------------~-~~~~~i~~~~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~  121 (211)
T cd03298          66 ---------------------P-PADRPVSMLFQEN--NLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGL  121 (211)
T ss_pred             ---------------------C-HhHccEEEEeccc--ccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHH
Confidence                                 0 0124699999987  36778899998753211  1     13356788999999876


Q ss_pred             cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         333 AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       333 ~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .+. ++.+||||||||++||++++
T Consensus       122 ~~~-~~~~LS~G~~qrv~ia~al~  144 (211)
T cd03298         122 EKR-LPGELSGGERQRVALARVLV  144 (211)
T ss_pred             HhC-CcccCCHHHHHHHHHHHHHh
Confidence            554 67999999999999999974

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.93  E-value=4.4e-26  Score=209.21  Aligned_cols=150  Identities=23%  Similarity=0.263  Sum_probs=112.2

Q ss_pred             CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeec-----cccCcCCee
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN-----FGLDMESRV  252 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~-----~~~~~~~~i  252 (356)
                      ++++++|+++.| +++.+++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.+     +...     
T Consensus         5 ~~l~~~~l~~~~-~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~-----   78 (258)
T PRK11701          5 PLLSVRGLTKLY-GPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYAL-----   78 (258)
T ss_pred             ceEEEeeeEEEc-CCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccC-----
Confidence            479999999999 45679999999999999999999999999999999999999999999999865     2100     


Q ss_pred             eeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC-C----HHHHHHHH
Q psy2684         253 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-P----YEKSRRQL  324 (356)
Q Consensus       253 alvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~-~----~~~~~~~L  324 (356)
                                             .........+..++|++|++...+++..++.+++...   ... .    ...+.+++
T Consensus        79 -----------------------~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l  135 (258)
T PRK11701         79 -----------------------SEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWL  135 (258)
T ss_pred             -----------------------CHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence                                   0000000012469999999754566667776665321   111 1    23456789


Q ss_pred             hhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         325 GMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       325 ~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +.+++......+++.+|||||||||+||++++
T Consensus       136 ~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~  167 (258)
T PRK11701        136 ERVEIDAARIDDLPTTFSGGMQQRLQIARNLV  167 (258)
T ss_pred             HHcCCChhHHhCCCccCCHHHHHHHHHHHHHh
Confidence            99999742223477999999999999999874

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=4.6e-26  Score=212.12  Aligned_cols=149  Identities=29%  Similarity=0.392  Sum_probs=112.1

Q ss_pred             cEEEecceeeeCCC----ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeee
Q psy2684         179 VLGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVAL  254 (356)
Q Consensus       179 ~l~~~~l~~~~~~~----~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ial  254 (356)
                      +++++|+++.|++.    +.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++....      
T Consensus         2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~------   75 (287)
T PRK13641          2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPET------   75 (287)
T ss_pred             EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECcccc------
Confidence            47899999999532    46999999999999999999999999999999999999999999999987653100      


Q ss_pred             ecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhc
Q psy2684         255 VGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMF  327 (356)
Q Consensus       255 vG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~  327 (356)
                            .+               .. ....+..+||++|++...++ ..|+.+++...   ....    ...+.++++.+
T Consensus        76 ------~~---------------~~-~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~  132 (287)
T PRK13641         76 ------GN---------------KN-LKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKV  132 (287)
T ss_pred             ------cc---------------ch-HHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence                  00               00 00112469999998743345 46898887532   2222    23467789999


Q ss_pred             CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         328 GLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       328 ~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      |+......+++.+|||||||||+||++++
T Consensus       133 gL~~~~~~~~~~~LSgGq~qrl~laral~  161 (287)
T PRK13641        133 GLSEDLISKSPFELSGGQMRRVAIAGVMA  161 (287)
T ss_pred             CCChhHhhCCcccCCHHHHHHHHHHHHHH
Confidence            99732334578999999999999999974

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.93  E-value=1.1e-25  Score=205.69  Aligned_cols=150  Identities=25%  Similarity=0.401  Sum_probs=114.3

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      +++++|+++.| ++..+++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++....          
T Consensus         3 ~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~----------   71 (250)
T PRK11264          3 AIEVKNLVKKF-HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTAR----------   71 (250)
T ss_pred             cEEEeceEEEE-CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccc----------
Confidence            68999999999 4567999999999999999999999999999999999999999999999987753100          


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh----cCCC----HHHHHHHHhhcCCC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLP----YEKSRRQLGMFGLP  330 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~----~~~~----~~~~~~~L~~~~l~  330 (356)
                      ...+.             ... ....+..++|++|++  .+++..|+.+++...    ....    ...+.++++.+|+.
T Consensus        72 ~~~~~-------------~~~-~~~~~~~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~  135 (250)
T PRK11264         72 SLSQQ-------------KGL-IRQLRQHVGFVFQNF--NLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLA  135 (250)
T ss_pred             cccch-------------hhH-HHHhhhhEEEEecCc--ccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc
Confidence            00000             000 001134699999986  467778999887531    1222    23466789999998


Q ss_pred             CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         331 SYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       331 ~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ...+ +++.+|||||||||+||++++
T Consensus       136 ~~~~-~~~~~LS~Gq~qrv~la~al~  160 (250)
T PRK11264        136 GKET-SYPRRLSGGQQQRVAIARALA  160 (250)
T ss_pred             chhh-CChhhCChHHHHHHHHHHHHh
Confidence            6554 467999999999999999974

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.93  E-value=8.5e-26  Score=206.00  Aligned_cols=143  Identities=26%  Similarity=0.305  Sum_probs=111.5

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccC-----CCceeEeeeccccCcCCeee
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN-----KGKVLLEKVNFGLDMESRVA  253 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~-----~G~i~~~g~~~~~~~~~~ia  253 (356)
                      +++++|+++.| ++..+++++||+|++||+++|+|+||||||||+++|+|+++|+     +|+|.++|.++....     
T Consensus         1 ~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~-----   74 (247)
T TIGR00972         1 AIEIENLNLFY-GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKK-----   74 (247)
T ss_pred             CEEEEEEEEEE-CCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccc-----
Confidence            47899999999 4567999999999999999999999999999999999999998     999999987653100     


Q ss_pred             eecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cC-CC----HHHHHHHHh
Q psy2684         254 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FN-LP----YEKSRRQLG  325 (356)
Q Consensus       254 lvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~-~~----~~~~~~~L~  325 (356)
                                              .. ....+..++|++|++  .+++ .|+.+++...   .+ ..    ...+.++++
T Consensus        75 ------------------------~~-~~~~~~~i~~v~q~~--~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~  126 (247)
T TIGR00972        75 ------------------------ID-VVELRRRVGMVFQKP--NPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLK  126 (247)
T ss_pred             ------------------------cc-hHHHHhheEEEecCc--ccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHH
Confidence                                    00 001134699999986  3666 8999887532   22 12    134667899


Q ss_pred             hcCCC----CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         326 MFGLP----SYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       326 ~~~l~----~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .+|+.    .... +++.+|||||||||+||++++
T Consensus       127 ~~~l~~~~~~~~~-~~~~~LSgG~~qrv~laral~  160 (247)
T TIGR00972       127 KAALWDEVKDRLH-DSALGLSGGQQQRLCIARALA  160 (247)
T ss_pred             HcCCCcchhhHhh-CCcccCCHHHHHHHHHHHHHh
Confidence            99997    4444 467999999999999999974

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=7.8e-26  Score=209.58  Aligned_cols=145  Identities=30%  Similarity=0.477  Sum_probs=113.6

Q ss_pred             CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      .+++++|+++.|+++..+++++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++...          
T Consensus         2 ~~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----------   71 (277)
T PRK13652          2 HLIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKE----------   71 (277)
T ss_pred             ceEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcC----------
Confidence            3689999999995445699999999999999999999999999999999999999999999998765210          


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcCCC
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLP  330 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~l~  330 (356)
                           +                . ...+..++|++|++...++ ..|+.+++...   .+...    ..+.++++.+|+.
T Consensus        72 -----~----------------~-~~~~~~i~~v~q~~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~  128 (277)
T PRK13652         72 -----N----------------I-REVRKFVGLVFQNPDDQIF-SPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLE  128 (277)
T ss_pred             -----C----------------H-HHHHhheEEEecCcccccc-cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCCh
Confidence                 0                0 0012468999999743344 56888887532   12332    2467789999998


Q ss_pred             CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         331 SYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       331 ~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +.... ++.+||||||||++||++++
T Consensus       129 ~~~~~-~~~~LS~Gq~qrl~laraL~  153 (277)
T PRK13652        129 ELRDR-VPHHLSGGEKKRVAIAGVIA  153 (277)
T ss_pred             hHhcC-CcccCCHHHHHHHHHHHHHH
Confidence            76554 67999999999999999974

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.93  E-value=3.9e-26  Score=210.30  Aligned_cols=144  Identities=28%  Similarity=0.342  Sum_probs=113.9

Q ss_pred             CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684         177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG  256 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG  256 (356)
                      +.+++++|+++.| ++..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...         
T Consensus         5 ~~~l~i~~l~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~---------   74 (265)
T PRK10253          5 VARLRGEQLTLGY-GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHY---------   74 (265)
T ss_pred             ccEEEEEEEEEEE-CCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhC---------
Confidence            4578999999999 456799999999999999999999999999999999999999999999998765210         


Q ss_pred             CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-C-------CC---HHHHHHHHh
Q psy2684         257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-N-------LP---YEKSRRQLG  325 (356)
Q Consensus       257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~-------~~---~~~~~~~L~  325 (356)
                                            . ....+..++|++|++  .+++..++.+++.... .       ..   ...+.++++
T Consensus        75 ----------------------~-~~~~~~~i~~v~q~~--~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  129 (265)
T PRK10253         75 ----------------------A-SKEVARRIGLLAQNA--TTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQ  129 (265)
T ss_pred             ----------------------C-HHHHhhheEEeeccC--cCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHH
Confidence                                  0 000123689999986  3666788988875321 0       11   234677899


Q ss_pred             hcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         326 MFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       326 ~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .+|+.+... +++.+||||||||++||++++
T Consensus       130 ~~~l~~~~~-~~~~~LS~Gq~qrv~laral~  159 (265)
T PRK10253        130 ATGITHLAD-QSVDTLSGGQRQRAWIAMVLA  159 (265)
T ss_pred             HcCCHHHhc-CCcccCChHHHHHHHHHHHHh
Confidence            999986555 477999999999999999974

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.93  E-value=6.7e-26  Score=207.87  Aligned_cols=158  Identities=24%  Similarity=0.331  Sum_probs=116.5

Q ss_pred             CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684         177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG  256 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG  256 (356)
                      +..++++|+++.| +++.+++++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++..... ..+.+ 
T Consensus         3 ~~~l~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~-~~~~~-   79 (257)
T PRK10619          3 ENKLNVIDLHKRY-GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRD-KDGQL-   79 (257)
T ss_pred             CccEEEeeeEEEE-CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccc-ccccc-
Confidence            3468999999999 46779999999999999999999999999999999999999999999999876531000 00000 


Q ss_pred             CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh----cCCC----HHHHHHHHhhcC
Q psy2684         257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLP----YEKSRRQLGMFG  328 (356)
Q Consensus       257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~----~~~~----~~~~~~~L~~~~  328 (356)
                                       .+.........+.+++|++|++  .+++..|+.+++...    ....    ...+.++++.+|
T Consensus        80 -----------------~~~~~~~~~~~~~~i~~v~q~~--~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~g  140 (257)
T PRK10619         80 -----------------KVADKNQLRLLRTRLTMVFQHF--NLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVG  140 (257)
T ss_pred             -----------------ccccchHHHHHhhceEEEecCc--ccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Confidence                             0000000001134699999986  477778999987431    1222    234677899999


Q ss_pred             CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         329 LPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       329 l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +......+++.+|||||||||+||++++
T Consensus       141 l~~~~~~~~~~~LS~G~~qrv~laral~  168 (257)
T PRK10619        141 IDERAQGKYPVHLSGGQQQRVSIARALA  168 (257)
T ss_pred             CChhhhhCCcccCCHHHHHHHHHHHHHh
Confidence            9875434467999999999999999974

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.93  E-value=6e-26  Score=207.69  Aligned_cols=150  Identities=23%  Similarity=0.259  Sum_probs=110.7

Q ss_pred             CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeec-----cccCcCCee
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN-----FGLDMESRV  252 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~-----~~~~~~~~i  252 (356)
                      ++++++|+++.| ++..+++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+     +...     
T Consensus         2 ~~l~~~~l~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~-----   75 (253)
T TIGR02323         2 PLLQVSGLSKSY-GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQL-----   75 (253)
T ss_pred             ceEEEeeeEEEe-CCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccC-----
Confidence            478999999999 45678999999999999999999999999999999999999999999998754     2100     


Q ss_pred             eeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cC-C----CHHHHHHHH
Q psy2684         253 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FN-L----PYEKSRRQL  324 (356)
Q Consensus       253 alvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~-~----~~~~~~~~L  324 (356)
                                           .+  .......+..++|++|++...++...++.+++...   .. .    ....+.+++
T Consensus        76 ---------------------~~--~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l  132 (253)
T TIGR02323        76 ---------------------SE--AERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWL  132 (253)
T ss_pred             ---------------------CH--HHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence                                 00  00000012358999998743345556666655321   11 1    124567889


Q ss_pred             hhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         325 GMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       325 ~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +.+++......+++..|||||||||+||++++
T Consensus       133 ~~l~l~~~~~~~~~~~LSgG~~qrv~laral~  164 (253)
T TIGR02323       133 EEVEIDPTRIDDLPRAFSGGMQQRLQIARNLV  164 (253)
T ss_pred             HHcCCChhhhhcCchhcCHHHHHHHHHHHHHh
Confidence            99999742334478999999999999999974

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=7.1e-26  Score=210.17  Aligned_cols=146  Identities=26%  Similarity=0.376  Sum_probs=113.4

Q ss_pred             CcEEEecceeeeCC-----CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCee
Q psy2684         178 PVLGLHDVTFGYPG-----GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRV  252 (356)
Q Consensus       178 ~~l~~~~l~~~~~~-----~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~i  252 (356)
                      ++++++|+++.|++     ++.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++...     
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~-----   77 (280)
T PRK13633          3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDE-----   77 (280)
T ss_pred             ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccc-----
Confidence            57999999999953     24699999999999999999999999999999999999999999999998765210     


Q ss_pred             eeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHh
Q psy2684         253 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLG  325 (356)
Q Consensus       253 alvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~  325 (356)
                                                ......+..+||++|++...++ ..++.+++...   .+..    ...+.++++
T Consensus        78 --------------------------~~~~~~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~  130 (280)
T PRK13633         78 --------------------------ENLWDIRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENLGIPPEEIRERVDESLK  130 (280)
T ss_pred             --------------------------ccHHHHhhheEEEecChhhhhc-cccHHHHHHhhHhhcCCCHHHHHHHHHHHHH
Confidence                                      0001113469999999743344 35777776432   1222    234677899


Q ss_pred             hcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         326 MFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       326 ~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .+|+...... ++.+|||||||||+||++++
T Consensus       131 ~~gL~~~~~~-~~~~LS~G~~qrv~laral~  160 (280)
T PRK13633        131 KVGMYEYRRH-APHLLSGGQKQRVAIAGILA  160 (280)
T ss_pred             HCCCHhHhhC-CcccCCHHHHHHHHHHHHHH
Confidence            9999876654 77999999999999999974

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=5.7e-26  Score=209.89  Aligned_cols=145  Identities=27%  Similarity=0.369  Sum_probs=110.4

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      |++++|+++.| +++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++....          
T Consensus         1 ml~~~~l~~~~-~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~----------   69 (271)
T PRK13638          1 MLATSDLWFRY-QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSK----------   69 (271)
T ss_pred             CeEEEEEEEEc-CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEccccc----------
Confidence            47899999999 4567999999999999999999999999999999999999999999999987652100          


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcCCCC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPS  331 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~l~~  331 (356)
                                         .. ....+..++|++|++... +...++.+++...   .+...    ..+.++++.+|+.+
T Consensus        70 -------------------~~-~~~~~~~i~~v~q~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  128 (271)
T PRK13638         70 -------------------RG-LLALRQQVATVFQDPEQQ-IFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQH  128 (271)
T ss_pred             -------------------CC-HHHHHhheEEEeeChhhc-cccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHh
Confidence                               00 001124699999986422 2345676665421   22222    23567899999977


Q ss_pred             ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         332 YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       332 ~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ... +++.+||||||||++||++++
T Consensus       129 ~~~-~~~~~LSgG~~qrl~laraL~  152 (271)
T PRK13638        129 FRH-QPIQCLSHGQKKRVAIAGALV  152 (271)
T ss_pred             Hhc-CCchhCCHHHHHHHHHHHHHH
Confidence            655 477999999999999999974

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.93  E-value=3.9e-26  Score=208.33  Aligned_cols=150  Identities=24%  Similarity=0.315  Sum_probs=117.0

Q ss_pred             cEEEecceeeeCCC---ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc-c----CCCceeEeeeccccCcCC
Q psy2684         179 VLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-P----NKGKVLLEKVNFGLDMES  250 (356)
Q Consensus       179 ~l~~~~l~~~~~~~---~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~-p----~~G~i~~~g~~~~~~~~~  250 (356)
                      +|+++|++..|...   ..+++||||+|.+||++||||.|||||||+.++|+|+++ |    .+|+|.|+|.++....  
T Consensus         1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~--   78 (316)
T COG0444           1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLS--   78 (316)
T ss_pred             CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCC--
Confidence            47899999999542   369999999999999999999999999999999999998 3    5789999988753110  


Q ss_pred             eeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh----cCC-C----HHHHH
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNL-P----YEKSR  321 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~----~~~-~----~~~~~  321 (356)
                                                .......+..+|+|+||+|...|+|-+++.+.+...    ... .    .+.+.
T Consensus        79 --------------------------~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~  132 (316)
T COG0444          79 --------------------------EKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAI  132 (316)
T ss_pred             --------------------------HHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHH
Confidence                                      011111234579999999988999999998776542    122 2    23577


Q ss_pred             HHHhhcCCCCc--cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         322 RQLGMFGLPSY--AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       322 ~~L~~~~l~~~--~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ++|+.+|+++.  ..+.+|++|||||+|||+||.+++
T Consensus       133 ~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala  169 (316)
T COG0444         133 ELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALA  169 (316)
T ss_pred             HHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHh
Confidence            89999999864  334567999999999999999874

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=6.3e-26  Score=210.00  Aligned_cols=146  Identities=32%  Similarity=0.502  Sum_probs=113.1

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      +++++|+++.|+++..+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++....          
T Consensus         1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~----------   70 (275)
T PRK13639          1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDK----------   70 (275)
T ss_pred             CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECcccc----------
Confidence            4789999999954456999999999999999999999999999999999999999999999987652100          


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcCCCC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPS  331 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~l~~  331 (356)
                                          ......+..++|++|++...++ ..|+.+++...   .+...    ..+.++++.+++.+
T Consensus        71 --------------------~~~~~~~~~i~~v~q~~~~~~~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~  129 (275)
T PRK13639         71 --------------------KSLLEVRKTVGIVFQNPDDQLF-APTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEG  129 (275)
T ss_pred             --------------------chHHHHHhheEEEeeChhhhhc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch
Confidence                                0000113469999999743344 45888887532   12221    34677899999987


Q ss_pred             ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         332 YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       332 ~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ..+ +++.+|||||+||++||++++
T Consensus       130 ~~~-~~~~~LS~Gq~qrv~laral~  153 (275)
T PRK13639        130 FEN-KPPHHLSGGQKKRVAIAGILA  153 (275)
T ss_pred             hhc-CChhhCCHHHHHHHHHHHHHh
Confidence            665 477999999999999999974

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.93  E-value=3.9e-26  Score=230.15  Aligned_cols=142  Identities=39%  Similarity=0.554  Sum_probs=113.9

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      -++++||+|+|++++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++..            
T Consensus       334 ~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~------------  401 (529)
T TIGR02868       334 TLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSS------------  401 (529)
T ss_pred             eEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhh------------
Confidence            48999999999655679999999999999999999999999999999999999999999999988631            


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHhhcCCCCccc---
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAH---  334 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-~~~~~~~~~~~L~~~~l~~~~~---  334 (356)
                                           +....+.+++|++|++.  +| +.|+.||+... ...+++++++.++..++.+...   
T Consensus       402 ---------------------~~~~lr~~i~~V~Q~~~--lF-~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp  457 (529)
T TIGR02868       402 ---------------------LQDELRRRISVFAQDAH--LF-DTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLP  457 (529)
T ss_pred             ---------------------HHHHHHhheEEEccCcc--cc-cccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCc
Confidence                                 11112457999999983  55 55899998653 3457778888888877643221   


Q ss_pred             ---cCC----CCCCChHHHHHHHHHHHcC
Q psy2684         335 ---TIP----IRDLSGGQKARVALAELTL  356 (356)
Q Consensus       335 ---~~~----~~~LSGGqkqRvalA~~~l  356 (356)
                         +..    -..||||||||++|||+++
T Consensus       458 ~GldT~ige~G~~LSGGQrQRiaiARall  486 (529)
T TIGR02868       458 DGLDTVLGEGGARLSGGERQRLALARALL  486 (529)
T ss_pred             ccccchhccccCcCCHHHHHHHHHHHHHh
Confidence               111    2469999999999999975

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=5.4e-26  Score=206.63  Aligned_cols=148  Identities=26%  Similarity=0.401  Sum_probs=113.9

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      +++++|+++.| +++.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++.....         
T Consensus         2 ~l~~~~l~~~~-~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~---------   71 (242)
T PRK11124          2 SIQLNGINCFY-GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKT---------   71 (242)
T ss_pred             EEEEEeeEEEE-CCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccc---------
Confidence            47899999999 55679999999999999999999999999999999999999999999999876521000         


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHH-h---cCCC----HHHHHHHHhhcCCC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK-L---FNLP----YEKSRRQLGMFGLP  330 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~-~---~~~~----~~~~~~~L~~~~l~  330 (356)
                                      ..... ....+..++|++|++  .+++..|+.+++.. .   .+..    ...+.++++.+|+.
T Consensus        72 ----------------~~~~~-~~~~~~~i~~~~q~~--~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~  132 (242)
T PRK11124         72 ----------------PSDKA-IRELRRNVGMVFQQY--NLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLK  132 (242)
T ss_pred             ----------------cchhh-HHHHHhheEEEecCc--cccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh
Confidence                            00000 001124699999986  47778899998742 1   1222    23467789999998


Q ss_pred             CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         331 SYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       331 ~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ..... ++.+|||||||||+||++++
T Consensus       133 ~~~~~-~~~~LS~G~~qrv~laral~  157 (242)
T PRK11124        133 PYADR-FPLHLSGGQQQRVAIARALM  157 (242)
T ss_pred             hhhhC-ChhhCCHHHHHHHHHHHHHh
Confidence            76554 67999999999999999974

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=1.5e-25  Score=204.75  Aligned_cols=143  Identities=25%  Similarity=0.321  Sum_probs=111.4

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc-----CCCceeEeeeccccCcCCeee
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGKVLLEKVNFGLDMESRVA  253 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p-----~~G~i~~~g~~~~~~~~~~ia  253 (356)
                      +++++|+++.| ++..+++++||+|.+|++++|+||||||||||+++|+|+++|     ++|+|.++|.++...      
T Consensus         3 ~l~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~------   75 (250)
T PRK14247          3 KIEIRDLKVSF-GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKM------   75 (250)
T ss_pred             eEEEEeeEEEE-CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcC------
Confidence            58999999999 456799999999999999999999999999999999999984     699999998765210      


Q ss_pred             eecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CC--C----HHHHHHHH
Q psy2684         254 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NL--P----YEKSRRQL  324 (356)
Q Consensus       254 lvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~--~----~~~~~~~L  324 (356)
                                               .. ...+..+||++|++.  +++..|+.+++....   ..  .    .+.+.+++
T Consensus        76 -------------------------~~-~~~~~~i~~v~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l  127 (250)
T PRK14247         76 -------------------------DV-IELRRRVQMVFQIPN--PIPNLSIFENVALGLKLNRLVKSKKELQERVRWAL  127 (250)
T ss_pred             -------------------------CH-HHHhccEEEEeccCc--cCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHH
Confidence                                     00 011346999999873  677889999875321   11  1    13456789


Q ss_pred             hhcCCCCc---cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         325 GMFGLPSY---AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       325 ~~~~l~~~---~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +.+++...   ..++++.+|||||||||+||++++
T Consensus       128 ~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~  162 (250)
T PRK14247        128 EKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALA  162 (250)
T ss_pred             HHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHh
Confidence            99998531   224577999999999999999974

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=6.5e-26  Score=207.71  Aligned_cols=142  Identities=28%  Similarity=0.374  Sum_probs=112.1

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      +++++|++++| ++..+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...           
T Consensus         2 ~l~~~~l~~~~-~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-----------   69 (255)
T PRK11231          2 TLRTENLTVGY-GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISML-----------   69 (255)
T ss_pred             EEEEEeEEEEE-CCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHC-----------
Confidence            47899999999 556799999999999999999999999999999999999999999999998764200           


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-------cCC----CHHHHHHHHhhc
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-------FNL----PYEKSRRQLGMF  327 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-------~~~----~~~~~~~~L~~~  327 (356)
                                          .. ...+..++|++|++  .+++..|+.+++...       ...    ....+.++++.+
T Consensus        70 --------------------~~-~~~~~~i~~~~q~~--~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  126 (255)
T PRK11231         70 --------------------SS-RQLARRLALLPQHH--LTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQT  126 (255)
T ss_pred             --------------------CH-HHHhhheEEecccC--CCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHc
Confidence                                00 00123589999986  366677898887531       111    123466789999


Q ss_pred             CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         328 GLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       328 ~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      |+..... +++.+|||||+|||+||++++
T Consensus       127 ~l~~~~~-~~~~~LS~G~~qrv~laral~  154 (255)
T PRK11231        127 RINHLAD-RRLTDLSGGQRQRAFLAMVLA  154 (255)
T ss_pred             CCHHHHc-CCcccCCHHHHHHHHHHHHHh
Confidence            9976555 467999999999999999974

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.93  E-value=1.3e-25  Score=204.29  Aligned_cols=143  Identities=23%  Similarity=0.328  Sum_probs=108.6

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccc--ccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL--TPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~--~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      ++++|+++.| ++..+|+++||+|++||+++|+||||||||||+++|+|++  +|++|+|.++|.++...          
T Consensus         1 l~~~~l~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~----------   69 (243)
T TIGR01978         1 LKIKDLHVSV-EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLEL----------   69 (243)
T ss_pred             CeEeeEEEEE-CCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCC----------
Confidence            4689999999 4567999999999999999999999999999999999995  79999999998765210          


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---C-------CC----HHHHHHH
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---N-------LP----YEKSRRQ  323 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~-------~~----~~~~~~~  323 (356)
                                           ......+..++|++|++.  +++..|+.+++....   .       ..    .+.+.++
T Consensus        70 ---------------------~~~~~~~~~i~~v~q~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (243)
T TIGR01978        70 ---------------------EPDERARAGLFLAFQYPE--EIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAK  126 (243)
T ss_pred             ---------------------CHHHhhccceEeeecccc--ccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHH
Confidence                                 000001234899999873  677888888764321   0       11    1346678


Q ss_pred             HhhcCCCCccccCCCC-CCChHHHHHHHHHHHcC
Q psy2684         324 LGMFGLPSYAHTIPIR-DLSGGQKARVALAELTL  356 (356)
Q Consensus       324 L~~~~l~~~~~~~~~~-~LSGGqkqRvalA~~~l  356 (356)
                      ++.+++......+++. .|||||||||+||++++
T Consensus       127 l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~  160 (243)
T TIGR01978       127 LALLGMDEEFLNRSVNEGFSGGEKKRNEILQMAL  160 (243)
T ss_pred             HHHcCCchhhcccccccCcCHHHHHHHHHHHHHh
Confidence            9999997433334566 59999999999999974

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.93  E-value=2e-25  Score=213.31  Aligned_cols=143  Identities=27%  Similarity=0.359  Sum_probs=111.7

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      ||++ |+++.| +++. + ++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....          
T Consensus         1 ~l~~-~l~k~~-~~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~----------   66 (352)
T PRK11144          1 MLEL-NFKQQL-GDLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAE----------   66 (352)
T ss_pred             CeEE-EEEEEe-CCEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccc----------
Confidence            4677 999999 4443 3 899999999999999999999999999999999999999999987652100          


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHhhcCCCCccccCC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYAHTIP  337 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~L~~~~l~~~~~~~~  337 (356)
                                        ........+.+++|++|++  .+++.+|+.+++.... .....++.++++.+|+.+..+. +
T Consensus        67 ------------------~~~~~~~~~~~i~~v~q~~--~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~-~  125 (352)
T PRK11144         67 ------------------KGICLPPEKRRIGYVFQDA--RLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDR-Y  125 (352)
T ss_pred             ------------------cccccchhhCCEEEEcCCc--ccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhC-C
Confidence                              0000001134799999986  4788999999885432 2234567889999999876654 6


Q ss_pred             CCCCChHHHHHHHHHHHcC
Q psy2684         338 IRDLSGGQKARVALAELTL  356 (356)
Q Consensus       338 ~~~LSGGqkqRvalA~~~l  356 (356)
                      +.+|||||||||+||++++
T Consensus       126 ~~~LSgGq~qRvalaraL~  144 (352)
T PRK11144        126 PGSLSGGEKQRVAIGRALL  144 (352)
T ss_pred             cccCCHHHHHHHHHHHHHH
Confidence            7999999999999999974

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=1.2e-25  Score=208.83  Aligned_cols=146  Identities=29%  Similarity=0.437  Sum_probs=114.5

Q ss_pred             CCcEEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCC---CceeEeeeccccCcCCee
Q psy2684         177 PPVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK---GKVLLEKVNFGLDMESRV  252 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~---G~i~~~g~~~~~~~~~~i  252 (356)
                      +.+++++|+++.|++. ..+++++||+|.+||+++|+||||||||||+++|+|+++|++   |+|.++|.++...     
T Consensus         3 ~~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~-----   77 (282)
T PRK13640          3 DNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAK-----   77 (282)
T ss_pred             CceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcC-----
Confidence            3579999999999532 469999999999999999999999999999999999999998   8999998765210     


Q ss_pred             eeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHh
Q psy2684         253 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLG  325 (356)
Q Consensus       253 alvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~  325 (356)
                                                .. ...+.++||++|++. .++...|+.+++...   .+.+.    +.+.++++
T Consensus        78 --------------------------~~-~~~~~~ig~v~q~~~-~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~  129 (282)
T PRK13640         78 --------------------------TV-WDIREKVGIVFQNPD-NQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLA  129 (282)
T ss_pred             --------------------------CH-HHHHhheEEEEECHH-HhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHH
Confidence                                      00 011246999999973 245567999987532   22332    34677899


Q ss_pred             hcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         326 MFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       326 ~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .+|+.+.... ++.+|||||+|||+||++++
T Consensus       130 ~~~L~~~~~~-~~~~LS~G~~qrv~laral~  159 (282)
T PRK13640        130 DVGMLDYIDS-EPANLSGGQKQRVAIAGILA  159 (282)
T ss_pred             HCCChhHhcC-CcccCCHHHHHHHHHHHHHH
Confidence            9999876554 67999999999999999974

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.92  E-value=9.1e-26  Score=208.28  Aligned_cols=144  Identities=27%  Similarity=0.364  Sum_probs=112.1

Q ss_pred             EEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCC
Q psy2684         181 GLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGI  260 (356)
Q Consensus       181 ~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~  260 (356)
                      .++|+++.| ++..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++....            
T Consensus        26 ~~~~~~~~~-~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~------------   92 (269)
T cd03294          26 SKEEILKKT-GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMS------------   92 (269)
T ss_pred             hhhhhhhhc-CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccC------------
Confidence            567999999 6678999999999999999999999999999999999999999999999987652100            


Q ss_pred             chhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCCCCcc
Q psy2684         261 GKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYA  333 (356)
Q Consensus       261 GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l~~~~  333 (356)
                                    +  .......+.+++|++|++  .+++..|+.+++...   .+..    ...+.++++.+++.+..
T Consensus        93 --------------~--~~~~~~~~~~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~  154 (269)
T cd03294          93 --------------R--KELRELRRKKISMVFQSF--ALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWE  154 (269)
T ss_pred             --------------h--hhhhhhhcCcEEEEecCc--ccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHh
Confidence                          0  000001124699999986  467788999987532   1222    23466789999998665


Q ss_pred             ccCCCCCCChHHHHHHHHHHHcC
Q psy2684         334 HTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       334 ~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .. ++.+|||||||||+||++++
T Consensus       155 ~~-~~~~LS~Gq~qrv~lAral~  176 (269)
T cd03294         155 HK-YPDELSGGMQQRVGLARALA  176 (269)
T ss_pred             hC-CcccCCHHHHHHHHHHHHHh
Confidence            54 67999999999999999974

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.92  E-value=8.9e-26  Score=203.66  Aligned_cols=142  Identities=25%  Similarity=0.324  Sum_probs=109.5

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG  259 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG  259 (356)
                      ++++|+++.| +++++|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...            
T Consensus         1 l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~------------   67 (230)
T TIGR03410         1 LEVSNLNVYY-GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKL------------   67 (230)
T ss_pred             CEEEeEEEEe-CCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCC------------
Confidence            4689999999 456799999999999999999999999999999999999999999999998765210            


Q ss_pred             CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCC-HHHHHHHHhhcC-CCCccc
Q psy2684         260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLP-YEKSRRQLGMFG-LPSYAH  334 (356)
Q Consensus       260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~-~~~~~~~L~~~~-l~~~~~  334 (356)
                                         ......+..++|++|++  .+++..|+.+++....   ... ...+.++++.++ +.....
T Consensus        68 -------------------~~~~~~~~~i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~  126 (230)
T TIGR03410        68 -------------------PPHERARAGIAYVPQGR--EIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLG  126 (230)
T ss_pred             -------------------CHHHHHHhCeEEeccCC--cccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhh
Confidence                               00000124699999987  3677889998875321   122 233466777776 444444


Q ss_pred             cCCCCCCChHHHHHHHHHHHcC
Q psy2684         335 TIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       335 ~~~~~~LSGGqkqRvalA~~~l  356 (356)
                       +++.+|||||||||+||++++
T Consensus       127 -~~~~~LS~G~~qrv~la~al~  147 (230)
T TIGR03410       127 -RRGGDLSGGQQQQLAIARALV  147 (230)
T ss_pred             -CChhhCCHHHHHHHHHHHHHh
Confidence             477999999999999999974

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.92  E-value=1.3e-25  Score=206.63  Aligned_cols=148  Identities=24%  Similarity=0.363  Sum_probs=113.9

Q ss_pred             CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccC---CCceeEeeeccccCcCCeeee
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN---KGKVLLEKVNFGLDMESRVAL  254 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~---~G~i~~~g~~~~~~~~~~ial  254 (356)
                      ++++++|+++.| ++..+|+++||+|.+||+++|+||||||||||+++|+|+++|+   +|+|.++|.++...       
T Consensus         3 ~~l~~~nl~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~-------   74 (262)
T PRK09984          3 TIIRVEKLAKTF-NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQRE-------   74 (262)
T ss_pred             cEEEEeeEEEEe-CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccc-------
Confidence            579999999999 5677999999999999999999999999999999999999986   49999998765210       


Q ss_pred             ecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-----------CC----CHHH
Q psy2684         255 VGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-----------NL----PYEK  319 (356)
Q Consensus       255 vG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-----------~~----~~~~  319 (356)
                       +.+                  .... ...+.+++|++|++  .+++..|+.+++....           ..    ....
T Consensus        75 -~~~------------------~~~~-~~~~~~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~  132 (262)
T PRK09984         75 -GRL------------------ARDI-RKSRANTGYIFQQF--NLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQR  132 (262)
T ss_pred             -ccc------------------chhH-HHHHhheEEEcccc--ccccCCcHHHHHHhhhcccccchhhhcccccHHHHHH
Confidence             000                  0000 01134699999986  4677889999875321           00    1234


Q ss_pred             HHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         320 SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       320 ~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +.++++.+|+.+..+. ++.+|||||||||+||++++
T Consensus       133 ~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~laral~  168 (262)
T PRK09984        133 ALQALTRVGMVHFAHQ-RVSTLSGGQQQRVAIARALM  168 (262)
T ss_pred             HHHHHHHcCCHHHHhC-CccccCHHHHHHHHHHHHHh
Confidence            6788999999865554 67999999999999999874

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.92  E-value=7.8e-26  Score=212.09  Aligned_cols=132  Identities=28%  Similarity=0.417  Sum_probs=106.0

Q ss_pred             eeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCchhhHHH
Q psy2684         188 GYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLN  267 (356)
Q Consensus       188 ~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~  267 (356)
                      .| +++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...                    
T Consensus         2 ~y-~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~--------------------   60 (302)
T TIGR01188         2 VY-GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVRE--------------------   60 (302)
T ss_pred             ee-CCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC--------------------
Confidence            56 456799999999999999999999999999999999999999999999998765210                    


Q ss_pred             HHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCCCCccccCCCCC
Q psy2684         268 LLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRD  340 (356)
Q Consensus       268 ~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~  340 (356)
                                   ....+.++||++|++  .+++.+|+.+++...   .+..    ...+.++++.+|+.+... +++.+
T Consensus        61 -------------~~~~~~~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~  124 (302)
T TIGR01188        61 -------------PRKVRRSIGIVPQYA--SVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAAD-RPVGT  124 (302)
T ss_pred             -------------HHHHHhhcEEecCCC--CCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhC-Cchhh
Confidence                         000134699999986  478889999987532   2332    234678899999987655 47799


Q ss_pred             CChHHHHHHHHHHHcC
Q psy2684         341 LSGGQKARVALAELTL  356 (356)
Q Consensus       341 LSGGqkqRvalA~~~l  356 (356)
                      |||||||||+||++++
T Consensus       125 LSgG~~qrv~la~al~  140 (302)
T TIGR01188       125 YSGGMRRRLDIAASLI  140 (302)
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999999974

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=1.2e-25  Score=203.83  Aligned_cols=144  Identities=22%  Similarity=0.283  Sum_probs=111.0

Q ss_pred             CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      ++++++|+++.| ++..+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...          
T Consensus         4 ~~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~----------   72 (237)
T PRK11614          4 VMLSFDKVSAHY-GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDW----------   72 (237)
T ss_pred             cEEEEEeEEEee-CCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCC----------
Confidence            579999999999 456799999999999999999999999999999999999999999999998764210          


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC-CC----HHHHHHHHhhc-CCCC
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN-LP----YEKSRRQLGMF-GLPS  331 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~-~~----~~~~~~~L~~~-~l~~  331 (356)
                                           ......+..++|++|++  .+++..|+.+++..... ..    ...+.++++.+ ++..
T Consensus        73 ---------------------~~~~~~~~~i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~  129 (237)
T PRK11614         73 ---------------------QTAKIMREAVAIVPEGR--RVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHE  129 (237)
T ss_pred             ---------------------CHHHHHHhCEEEeccCc--ccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHH
Confidence                                 00000124699999986  36777899988754211 11    22345667777 4654


Q ss_pred             ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         332 YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       332 ~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .... ++.+|||||||||+||++++
T Consensus       130 ~~~~-~~~~LS~G~~qrl~la~al~  153 (237)
T PRK11614        130 RRIQ-RAGTMSGGEQQMLAIGRALM  153 (237)
T ss_pred             HHhC-chhhCCHHHHHHHHHHHHHH
Confidence            4443 67999999999999999974

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=2.5e-25  Score=200.98  Aligned_cols=138  Identities=31%  Similarity=0.416  Sum_probs=109.9

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      +++++|+++.|+ +.  ..++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...           
T Consensus         1 ~l~~~~l~~~~~-~~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-----------   66 (232)
T PRK10771          1 MLKLTDITWLYH-HL--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTT-----------   66 (232)
T ss_pred             CeEEEEEEEEEC-Cc--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcC-----------
Confidence            478999999994 43  3499999999999999999999999999999999999999999998765210           


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc--C--CC---HHHHHHHHhhcCCCC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF--N--LP---YEKSRRQLGMFGLPS  331 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~--~--~~---~~~~~~~L~~~~l~~  331 (356)
                                          .   .....++|++|++  .+++..|+.+++....  .  ..   ...+.++++.+|+..
T Consensus        67 --------------------~---~~~~~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  121 (232)
T PRK10771         67 --------------------P---PSRRPVSMLFQEN--NLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIED  121 (232)
T ss_pred             --------------------C---hhhccEEEEeccc--ccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHH
Confidence                                0   0124699999986  4777889999875321  1  11   234778899999986


Q ss_pred             ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         332 YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       332 ~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ..+ +++.+|||||||||+||++++
T Consensus       122 ~~~-~~~~~LS~G~~qrv~laral~  145 (232)
T PRK10771        122 LLA-RLPGQLSGGQRQRVALARCLV  145 (232)
T ss_pred             HHh-CCcccCCHHHHHHHHHHHHHh
Confidence            555 477999999999999999874

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.92  E-value=2.3e-25  Score=223.32  Aligned_cols=145  Identities=23%  Similarity=0.317  Sum_probs=116.3

Q ss_pred             CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684         177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG  256 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG  256 (356)
                      .++++++|+++.| +++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...         
T Consensus         9 ~~~l~~~~l~~~~-~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~---------   78 (510)
T PRK15439          9 PPLLCARSISKQY-SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARL---------   78 (510)
T ss_pred             CceEEEEeEEEEe-CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCC---------
Confidence            3579999999999 566799999999999999999999999999999999999999999999998765210         


Q ss_pred             CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCC---CHHHHHHHHhhcCCCCcc
Q psy2684         257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNL---PYEKSRRQLGMFGLPSYA  333 (356)
Q Consensus       257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~---~~~~~~~~L~~~~l~~~~  333 (356)
                                            ......+..+||++|++  .+++..|+.+++......   ..+.+.++++.+++....
T Consensus        79 ----------------------~~~~~~~~~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~  134 (510)
T PRK15439         79 ----------------------TPAKAHQLGIYLVPQEP--LLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDL  134 (510)
T ss_pred             ----------------------CHHHHHhCCEEEEeccC--ccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccc
Confidence                                  00000123599999986  477889999987543211   134567889999998765


Q ss_pred             ccCCCCCCChHHHHHHHHHHHcC
Q psy2684         334 HTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       334 ~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      + +++.+|||||||||+||++++
T Consensus       135 ~-~~~~~LSgG~~qrv~la~aL~  156 (510)
T PRK15439        135 D-SSAGSLEVADRQIVEILRGLM  156 (510)
T ss_pred             c-CChhhCCHHHHHHHHHHHHHH
Confidence            5 477999999999999999974

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.92  E-value=4.6e-26  Score=205.46  Aligned_cols=131  Identities=26%  Similarity=0.405  Sum_probs=108.9

Q ss_pred             ccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCC
Q psy2684         195 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT  274 (356)
Q Consensus       195 ~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~  274 (356)
                      -++|+||+|+.||++.|.|-||||||||++++.+++.|+.|+|+++|.++.             .+.+.+|         
T Consensus        43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~-------------~~~~~~L---------  100 (386)
T COG4175          43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIA-------------KLSAAEL---------  100 (386)
T ss_pred             eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchh-------------cCCHHHH---------
Confidence            578999999999999999999999999999999999999999999998864             1223332         


Q ss_pred             CCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcCCCCccccCCCCCCChHHHH
Q psy2684         275 PNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKA  347 (356)
Q Consensus       275 ~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSGGqkq  347 (356)
                            +.-++.++++|||++  .++|..|+.++....   .+.+.    +.+.++|+.+||....++ +|++|||||||
T Consensus       101 ------r~~Rr~~~sMVFQ~F--aLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~-yp~eLSGGMqQ  171 (386)
T COG4175         101 ------RELRRKKISMVFQSF--ALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADK-YPNELSGGMQQ  171 (386)
T ss_pred             ------HHHHhhhhhhhhhhh--ccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhc-CcccccchHHH
Confidence                  223456899999997  489999999998543   34443    457789999999998876 55999999999


Q ss_pred             HHHHHHHcC
Q psy2684         348 RVALAELTL  356 (356)
Q Consensus       348 RvalA~~~l  356 (356)
                      ||.|||+|.
T Consensus       172 RVGLARAla  180 (386)
T COG4175         172 RVGLARALA  180 (386)
T ss_pred             HHHHHHHHc
Confidence            999999973

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=1.8e-25  Score=206.41  Aligned_cols=146  Identities=25%  Similarity=0.342  Sum_probs=113.0

Q ss_pred             CCcEEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684         177 PPVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV  255 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv  255 (356)
                      .++++++|+++.|++. +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...        
T Consensus         5 ~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~--------   76 (269)
T PRK13648          5 NSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDD--------   76 (269)
T ss_pred             CceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcC--------
Confidence            4579999999999533 4589999999999999999999999999999999999999999999998765210        


Q ss_pred             cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcC
Q psy2684         256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFG  328 (356)
Q Consensus       256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~  328 (356)
                                             . ....+..++|++|++. .+++..++.+++...   .....    ..+.++++.++
T Consensus        77 -----------------------~-~~~~~~~i~~v~q~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  131 (269)
T PRK13648         77 -----------------------N-FEKLRKHIGIVFQNPD-NQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVD  131 (269)
T ss_pred             -----------------------C-HHHHHhheeEEEeChH-HhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcC
Confidence                                   0 0011346999999873 245566777765332   12222    34667899999


Q ss_pred             CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         329 LPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       329 l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +.+..+. ++.+|||||||||+||++++
T Consensus       132 l~~~~~~-~~~~LS~G~~qrl~laral~  158 (269)
T PRK13648        132 MLERADY-EPNALSGGQKQRVAIAGVLA  158 (269)
T ss_pred             CchhhhC-CcccCCHHHHHHHHHHHHHH
Confidence            9876554 67999999999999999974

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.92  E-value=1.7e-25  Score=223.97  Aligned_cols=144  Identities=24%  Similarity=0.320  Sum_probs=115.3

Q ss_pred             CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      ++++++|+++.| +++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++....         
T Consensus         3 ~~i~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~---------   72 (501)
T PRK10762          3 ALLQLKGIDKAF-PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNG---------   72 (501)
T ss_pred             ceEEEeeeEEEe-CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC---------
Confidence            479999999999 5667999999999999999999999999999999999999999999999987652100         


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc------C-CCH----HHHHHHHhh
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF------N-LPY----EKSRRQLGM  326 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~------~-~~~----~~~~~~L~~  326 (356)
                                           . ....+..++|++|++  .+++..|+.+++....      . ...    ..+.++++.
T Consensus        73 ---------------------~-~~~~~~~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~  128 (501)
T PRK10762         73 ---------------------P-KSSQEAGIGIIHQEL--NLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLAR  128 (501)
T ss_pred             ---------------------H-HHHHhCCEEEEEcch--hccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHH
Confidence                                 0 000124699999986  4778899999875321      1 111    346678999


Q ss_pred             cCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         327 FGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       327 ~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +|+.+..+ +++.+|||||||||+||++++
T Consensus       129 ~~l~~~~~-~~~~~LSgG~~qrv~la~al~  157 (501)
T PRK10762        129 LNLRFSSD-KLVGELSIGEQQMVEIAKVLS  157 (501)
T ss_pred             cCCCCCcc-CchhhCCHHHHHHHHHHHHHh
Confidence            99987655 478999999999999999974

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.92  E-value=1.6e-25  Score=206.98  Aligned_cols=143  Identities=25%  Similarity=0.244  Sum_probs=108.0

Q ss_pred             CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      .+++++|+++.|++++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++..           
T Consensus         5 ~~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~-----------   73 (272)
T PRK15056          5 AGIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ-----------   73 (272)
T ss_pred             ceEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH-----------
Confidence            368999999999545679999999999999999999999999999999999999999999999865410           


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-------cCC----CHHHHHHHHhh
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-------FNL----PYEKSRRQLGM  326 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-------~~~----~~~~~~~~L~~  326 (356)
                                              ...+..++|++|++........++.+++...       ...    ....+.++++.
T Consensus        74 ------------------------~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (272)
T PRK15056         74 ------------------------ALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALAR  129 (272)
T ss_pred             ------------------------hhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHH
Confidence                                    0012358999998642122223445543210       011    12345678999


Q ss_pred             cCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         327 FGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       327 ~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +|+.+..+ +++.+||||||||++||++++
T Consensus       130 ~gl~~~~~-~~~~~LSgG~~qrv~laraL~  158 (272)
T PRK15056        130 VDMVEFRH-RQIGELSGGQKKRVFLARAIA  158 (272)
T ss_pred             cCChhHhc-CCcccCCHHHHHHHHHHHHHh
Confidence            99987655 477999999999999999974

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=1.6e-25  Score=207.97  Aligned_cols=148  Identities=28%  Similarity=0.402  Sum_probs=110.8

Q ss_pred             EEEecceeeeCCC----ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684         180 LGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV  255 (356)
Q Consensus       180 l~~~~l~~~~~~~----~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv  255 (356)
                      ++++|+++.|++.    .++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++....       
T Consensus         3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~-------   75 (280)
T PRK13649          3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTS-------   75 (280)
T ss_pred             EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccc-------
Confidence            7899999999532    36999999999999999999999999999999999999999999999987653100       


Q ss_pred             cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcC
Q psy2684         256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFG  328 (356)
Q Consensus       256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~  328 (356)
                                         + ... ....+..++|++|++...+++ .|+.+++...   .+...    ..+.++++.+|
T Consensus        76 -------------------~-~~~-~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~  133 (280)
T PRK13649         76 -------------------K-NKD-IKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVG  133 (280)
T ss_pred             -------------------c-ccC-HHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence                               0 000 001134699999986323444 5888887532   22222    23567789999


Q ss_pred             CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         329 LPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       329 l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +.....++++.+|||||||||+||++++
T Consensus       134 l~~~~~~~~~~~LSgG~~qrv~la~al~  161 (280)
T PRK13649        134 ISESLFEKNPFELSGGQMRRVAIAGILA  161 (280)
T ss_pred             CChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence            9743334578999999999999999874

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.92  E-value=2.7e-25  Score=203.37  Aligned_cols=146  Identities=27%  Similarity=0.345  Sum_probs=110.7

Q ss_pred             CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc-----cCCCceeEeeeccccCcCCe
Q psy2684         177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGKVLLEKVNFGLDMESR  251 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~-----p~~G~i~~~g~~~~~~~~~~  251 (356)
                      +|+++++|+++.| +++.+|+++||+|.+|++++|+||||||||||+++|+|++.     |++|+|.++|.++...    
T Consensus         4 ~~~l~~~~l~~~~-~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~----   78 (253)
T PRK14242          4 PPKMEARGLSFFY-GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDP----   78 (253)
T ss_pred             CcEEEEeeeEEEE-CCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcccc----
Confidence            4689999999999 45679999999999999999999999999999999999975     6899999998765210    


Q ss_pred             eeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC-C----HHHHHHH
Q psy2684         252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-P----YEKSRRQ  323 (356)
Q Consensus       252 ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~-~----~~~~~~~  323 (356)
                                             +  .. ....+..++|++|++.  +++ .|+.+++...   .+. .    .+.+.++
T Consensus        79 -----------------------~--~~-~~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~  129 (253)
T PRK14242         79 -----------------------H--VD-VVELRRRVGMVFQKPN--PFP-KSIFENVAYGLRVNGVKDKAYLAERVERS  129 (253)
T ss_pred             -----------------------c--cC-HHHHhhcEEEEecCCC--CCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence                                   0  00 0011346999999863  565 4888887532   122 1    2346678


Q ss_pred             HhhcCCCCc---cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         324 LGMFGLPSY---AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       324 L~~~~l~~~---~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ++.+++...   ...+++.+|||||||||+||++++
T Consensus       130 l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~  165 (253)
T PRK14242        130 LRHAALWDEVKDRLHESALGLSGGQQQRLCIARALA  165 (253)
T ss_pred             HHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHh
Confidence            888988531   223467999999999999999974

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.92  E-value=2.6e-25  Score=198.32  Aligned_cols=137  Identities=28%  Similarity=0.380  Sum_probs=109.7

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG  259 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG  259 (356)
                      ++++|+++.|+ .  .+.++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...            
T Consensus         1 ~~~~~l~~~~~-~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~------------   65 (213)
T TIGR01277         1 LALDKVRYEYE-H--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGL------------   65 (213)
T ss_pred             CeEEeeeEEeC-C--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccC------------
Confidence            46899999994 3  56899999999999999999999999999999999999999999998765200            


Q ss_pred             CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc--CC-----CHHHHHHHHhhcCCCCc
Q psy2684         260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF--NL-----PYEKSRRQLGMFGLPSY  332 (356)
Q Consensus       260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~--~~-----~~~~~~~~L~~~~l~~~  332 (356)
                                        .    ..+..++|++|++.  +++..|+.+++....  ..     ....+.++++.+|+.+.
T Consensus        66 ------------------~----~~~~~i~~v~q~~~--~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~  121 (213)
T TIGR01277        66 ------------------A----PYQRPVSMLFQENN--LFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADY  121 (213)
T ss_pred             ------------------C----hhccceEEEeccCc--cCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHH
Confidence                              0    01346999999973  777889999875321  11     12356778999999766


Q ss_pred             cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         333 AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       333 ~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .. +++.+||||||||++||++++
T Consensus       122 ~~-~~~~~LS~G~~qrl~laral~  144 (213)
T TIGR01277       122 LD-RLPEQLSGGQRQRVALARCLV  144 (213)
T ss_pred             hh-CCcccCCHHHHHHHHHHHHHh
Confidence            54 467999999999999999874

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.92  E-value=1.2e-25  Score=205.53  Aligned_cols=154  Identities=31%  Similarity=0.421  Sum_probs=113.7

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG  259 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG  259 (356)
                      ++++|+++.| ++..+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....       |.+|
T Consensus         1 i~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~-------~~~~   72 (252)
T TIGR03005         1 VRFSDVTKRF-GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMP-------GRNG   72 (252)
T ss_pred             CEEEEEEEEe-CCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccc-------cccc
Confidence            4689999999 4567999999999999999999999999999999999999999999999987653110       0000


Q ss_pred             CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh----cCCC----HHHHHHHHhhcCCCC
Q psy2684         260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLP----YEKSRRQLGMFGLPS  331 (356)
Q Consensus       260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~----~~~~----~~~~~~~L~~~~l~~  331 (356)
                      ++            .+.........+..++|++|++  .+++..|+.+++...    .+..    ...+.++++.+|+.+
T Consensus        73 ~~------------~~~~~~~~~~~~~~i~~v~q~~--~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~  138 (252)
T TIGR03005        73 PL------------VPADEKHLRQMRNKIGMVFQSF--NLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLAD  138 (252)
T ss_pred             cc------------cccchhHHHHHhhCeEEEecCc--ccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh
Confidence            00            0000000001134699999986  477888999887532    1222    234677899999987


Q ss_pred             ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         332 YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       332 ~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .... ++.+|||||+||++||++++
T Consensus       139 ~~~~-~~~~LS~G~~qrv~laral~  162 (252)
T TIGR03005       139 KADH-MPAQLSGGQQQRVAIARALA  162 (252)
T ss_pred             Hhhc-ChhhcCHHHHHHHHHHHHHH
Confidence            6554 67999999999999999974

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.92  E-value=3e-25  Score=199.42  Aligned_cols=148  Identities=25%  Similarity=0.422  Sum_probs=111.1

Q ss_pred             cEEEecceeeeCC------CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeee----ccccCc
Q psy2684         179 VLGLHDVTFGYPG------GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKV----NFGLDM  248 (356)
Q Consensus       179 ~l~~~~l~~~~~~------~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~----~~~~~~  248 (356)
                      +++++|+++.|++      ...+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.    ++... 
T Consensus         1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~-   79 (224)
T TIGR02324         1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQA-   79 (224)
T ss_pred             CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhc-
Confidence            4789999999942      146999999999999999999999999999999999999999999999732    21100 


Q ss_pred             CCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHH
Q psy2684         249 ESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSR  321 (356)
Q Consensus       249 ~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~  321 (356)
                                               .  ........+..++|++|++  .+++..|+.+++...   .+..    .+.+.
T Consensus        80 -------------------------~--~~~~~~~~~~~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~  130 (224)
T TIGR02324        80 -------------------------S--PREVLEVRRKTIGYVSQFL--RVIPRVSALEVVAEPLLERGVPREAARARAR  130 (224)
T ss_pred             -------------------------C--HHHHHHHHhcceEEEeccc--ccCCCccHHHHHHHHHHHcCCCHHHHHHHHH
Confidence                                     0  0000000124699999987  367888998887531   2222    23567


Q ss_pred             HHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         322 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       322 ~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ++++.+|+.....++++.+||||||||++||++++
T Consensus       131 ~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~  165 (224)
T TIGR02324       131 ELLARLNIPERLWHLPPATFSGGEQQRVNIARGFI  165 (224)
T ss_pred             HHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHh
Confidence            78999999764434578999999999999999974

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.92  E-value=2.2e-25  Score=205.56  Aligned_cols=150  Identities=27%  Similarity=0.314  Sum_probs=113.9

Q ss_pred             CcEEEecceeeeCC--------CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcC
Q psy2684         178 PVLGLHDVTFGYPG--------GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDME  249 (356)
Q Consensus       178 ~~l~~~~l~~~~~~--------~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~  249 (356)
                      ++++++|+++.|++        ++.+++|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...  
T Consensus         2 ~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~--   79 (268)
T PRK10419          2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKL--   79 (268)
T ss_pred             ceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc--
Confidence            36899999999953        46799999999999999999999999999999999999999999999998754210  


Q ss_pred             CeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh----cCCC----HHHHH
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLP----YEKSR  321 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~----~~~~----~~~~~  321 (356)
                                              .+   ......+..++|++|++...+++..++.+++...    ....    ...+.
T Consensus        80 ------------------------~~---~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~  132 (268)
T PRK10419         80 ------------------------NR---AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARAS  132 (268)
T ss_pred             ------------------------Ch---hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHH
Confidence                                    00   0000113469999999743466778888876321    1222    13467


Q ss_pred             HHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         322 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       322 ~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ++++.+|+......+++..||||||||++||++++
T Consensus       133 ~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~  167 (268)
T PRK10419        133 EMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALA  167 (268)
T ss_pred             HHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHh
Confidence            88999999743333477999999999999999974

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.92  E-value=1.7e-25  Score=224.48  Aligned_cols=144  Identities=24%  Similarity=0.291  Sum_probs=114.8

Q ss_pred             CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      ++++++|+++.| +++.+++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++....         
T Consensus         4 ~~l~~~~l~~~~-~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~---------   73 (510)
T PRK09700          4 PYISMAGIGKSF-GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLD---------   73 (510)
T ss_pred             ceEEEeeeEEEc-CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCC---------
Confidence            579999999999 5667999999999999999999999999999999999999999999999987653100         


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-------CC---C----HHHHHHH
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-------NL---P----YEKSRRQ  323 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-------~~---~----~~~~~~~  323 (356)
                                            .....+.+++|++|++  .+++..|+.+++....       +.   .    ...+.++
T Consensus        74 ----------------------~~~~~~~~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (510)
T PRK09700         74 ----------------------HKLAAQLGIGIIYQEL--SVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMM  129 (510)
T ss_pred             ----------------------HHHHHHCCeEEEeecc--cccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHH
Confidence                                  0000123699999986  3677889998875311       11   1    1346678


Q ss_pred             HhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         324 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       324 L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ++.+|+.+..+ +++.+|||||||||+||++++
T Consensus       130 l~~~gl~~~~~-~~~~~LSgG~~qrv~ia~al~  161 (510)
T PRK09700        130 LLRVGLKVDLD-EKVANLSISHKQMLEIAKTLM  161 (510)
T ss_pred             HHHcCCCCCcc-cchhhCCHHHHHHHHHHHHHh
Confidence            99999986654 478999999999999999974

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.92  E-value=6.2e-25  Score=201.10  Aligned_cols=142  Identities=22%  Similarity=0.217  Sum_probs=110.8

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc----CCCceeEeeeccccCcCCeeee
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP----NKGKVLLEKVNFGLDMESRVAL  254 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p----~~G~i~~~g~~~~~~~~~~ial  254 (356)
                      +++++|+++.| + +.+|+++||+|.+||+++|+|+||||||||+++|+|+++|    ++|+|.++|.++..        
T Consensus         4 ~l~~~~l~~~~-~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~--------   73 (254)
T PRK10418          4 QIELRNIALQA-A-QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP--------   73 (254)
T ss_pred             EEEEeCeEEEe-c-cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccc--------
Confidence            58999999999 3 5799999999999999999999999999999999999999    99999999876420        


Q ss_pred             ecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHH---hcCC--CHHHHHHHHhhcCC
Q psy2684         255 VGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK---LFNL--PYEKSRRQLGMFGL  329 (356)
Q Consensus       255 vG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~---~~~~--~~~~~~~~L~~~~l  329 (356)
                                                ....+..++|++|++...+.+..++.+++..   ..+.  ..+.+.++++.+++
T Consensus        74 --------------------------~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l  127 (254)
T PRK10418         74 --------------------------CALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGL  127 (254)
T ss_pred             --------------------------cccccceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCC
Confidence                                      0001246999999974334555677666532   1222  23457788999999


Q ss_pred             CCc--cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         330 PSY--AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       330 ~~~--~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ...  ...+++.+|||||||||+||++++
T Consensus       128 ~~~~~~~~~~~~~LS~Gq~qrv~laral~  156 (254)
T PRK10418        128 ENAARVLKLYPFEMSGGMLQRMMIALALL  156 (254)
T ss_pred             CChhhhhhcCCcccCHHHHHHHHHHHHHh
Confidence            762  123477999999999999999974

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.92  E-value=1.3e-25  Score=192.24  Aligned_cols=141  Identities=30%  Similarity=0.400  Sum_probs=110.6

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      ||+++|++++. .++.+++++||++++||+++|+||||||||||++.|+|.+.|++|++.++|.++.....+.       
T Consensus         1 mi~a~nls~~~-~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~-------   72 (259)
T COG4559           1 MIRAENLSYSL-AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEE-------   72 (259)
T ss_pred             CeeeeeeEEEe-ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHH-------
Confidence            57899999999 6788999999999999999999999999999999999999999999999988764221100       


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---c--C-CC-HH--HHHHHHhhcCC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---F--N-LP-YE--KSRRQLGMFGL  329 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~--~-~~-~~--~~~~~L~~~~l  329 (356)
                                               ..++-+.++|+..  +-...|+.|.+...   .  + .+ +.  .+++.|++.++
T Consensus        73 -------------------------lA~~raVlpQ~s~--laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~  125 (259)
T COG4559          73 -------------------------LARHRAVLPQNSS--LAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDL  125 (259)
T ss_pred             -------------------------HHHHhhhcccCcc--cccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcCh
Confidence                                     0124577888864  33345777776432   1  1 11 22  26788999999


Q ss_pred             CCccccCCCCCCChHHHHHHHHHHHc
Q psy2684         330 PSYAHTIPIRDLSGGQKARVALAELT  355 (356)
Q Consensus       330 ~~~~~~~~~~~LSGGqkqRvalA~~~  355 (356)
                      .++..+ ...+|||||||||.|||+|
T Consensus       126 ~~la~R-~y~~LSGGEqQRVqlARvL  150 (259)
T COG4559         126 SGLAGR-DYRTLSGGEQQRVQLARVL  150 (259)
T ss_pred             hhhhcc-chhhcCchHHHHHHHHHHH
Confidence            998775 4589999999999999987

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=2.5e-25  Score=222.98  Aligned_cols=145  Identities=23%  Similarity=0.367  Sum_probs=115.3

Q ss_pred             CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc--CCCceeEeeeccccCcCCeeee
Q psy2684         177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP--NKGKVLLEKVNFGLDMESRVAL  254 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p--~~G~i~~~g~~~~~~~~~~ial  254 (356)
                      +++++++|+++.| +++.+|+++||+|.+|++++|+||||||||||+++|+|+++|  ++|+|.++|.++...       
T Consensus         3 ~~~l~~~nl~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~-------   74 (506)
T PRK13549          3 EYLLEMKNITKTF-GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQAS-------   74 (506)
T ss_pred             CceEEEeeeEEEe-CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCC-------
Confidence            3579999999999 566799999999999999999999999999999999999996  899999998765210       


Q ss_pred             ecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-----C-CC----HHHHHHHH
Q psy2684         255 VGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-----N-LP----YEKSRRQL  324 (356)
Q Consensus       255 vG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-----~-~~----~~~~~~~L  324 (356)
                                              ......+..+||++|++  .+++..|+.+++....     . ..    ...+.+++
T Consensus        75 ------------------------~~~~~~~~~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l  128 (506)
T PRK13549         75 ------------------------NIRDTERAGIAIIHQEL--ALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLL  128 (506)
T ss_pred             ------------------------CHHHHHHCCeEEEEecc--ccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHH
Confidence                                    00000124599999986  4778889999875321     1 12    13467889


Q ss_pred             hhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         325 GMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       325 ~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +.+++..... +++.+|||||||||+||++++
T Consensus       129 ~~~~l~~~~~-~~~~~LSgGqkqrv~la~al~  159 (506)
T PRK13549        129 AQLKLDINPA-TPVGNLGLGQQQLVEIAKALN  159 (506)
T ss_pred             HHcCCCCCcc-cchhhCCHHHHHHHHHHHHHh
Confidence            9999976554 478999999999999999974

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.92  E-value=2e-25  Score=204.68  Aligned_cols=141  Identities=30%  Similarity=0.365  Sum_probs=111.3

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG  259 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG  259 (356)
                      ++++|+++.| ++..+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++....           
T Consensus         2 l~~~~l~~~~-~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-----------   69 (256)
T TIGR03873         2 LRLSRVSWSA-GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLS-----------   69 (256)
T ss_pred             ceEEeEEEEE-CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCC-----------
Confidence            5789999999 5568999999999999999999999999999999999999999999999987652100           


Q ss_pred             CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-------CCC----HHHHHHHHhhcC
Q psy2684         260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-------NLP----YEKSRRQLGMFG  328 (356)
Q Consensus       260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-------~~~----~~~~~~~L~~~~  328 (356)
                                           ....+..++|++|++.  ++...|+.+++....       ...    ...+.++++.++
T Consensus        70 ---------------------~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  126 (256)
T TIGR03873        70 ---------------------RRARARRVALVEQDSD--TAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTE  126 (256)
T ss_pred             ---------------------HHHHhhheEEecccCc--cCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcC
Confidence                                 0001235899999873  556789998874321       111    234677899999


Q ss_pred             CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         329 LPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       329 l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +....+. ++.+|||||||||+||++++
T Consensus       127 l~~~~~~-~~~~LS~G~~qrl~la~al~  153 (256)
T TIGR03873       127 LSHLADR-DMSTLSGGERQRVHVARALA  153 (256)
T ss_pred             cHhhhcC-CcccCCHHHHHHHHHHHHHh
Confidence            9765554 67999999999999999974

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=3.7e-25  Score=202.61  Aligned_cols=146  Identities=24%  Similarity=0.228  Sum_probs=110.1

Q ss_pred             CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc-----CCCceeEeeeccccCcCCe
Q psy2684         177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGKVLLEKVNFGLDMESR  251 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p-----~~G~i~~~g~~~~~~~~~~  251 (356)
                      +++++++|+++.| ++..+++++||+|++||+++|+|+||||||||+++|+|+++|     ++|+|.++|.++...    
T Consensus         5 ~~~l~~~~l~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~----   79 (254)
T PRK14273          5 EAIIETENLNLFY-TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSN----   79 (254)
T ss_pred             CceEEEeeeEEEe-CCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccc----
Confidence            4579999999999 456799999999999999999999999999999999999997     489999998764210    


Q ss_pred             eeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC-C----HHHHHHH
Q psy2684         252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-P----YEKSRRQ  323 (356)
Q Consensus       252 ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~-~----~~~~~~~  323 (356)
                                               ... ....+..++|++|++.  ++ ..|+.+++...   .+. .    .+.+.+.
T Consensus        80 -------------------------~~~-~~~~~~~i~~v~q~~~--~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~  130 (254)
T PRK14273         80 -------------------------NFD-ILELRRKIGMVFQTPN--PF-LMSIYDNISYGPKIHGTKDKKKLDEIVEQS  130 (254)
T ss_pred             -------------------------ccc-HHHHhhceEEEeeccc--cc-cCcHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence                                     000 0011346999999974  45 47999987532   121 1    2345677


Q ss_pred             HhhcCCCC---ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         324 LGMFGLPS---YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       324 L~~~~l~~---~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ++.+++..   ...++++.+|||||||||+||++++
T Consensus       131 l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~  166 (254)
T PRK14273        131 LKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLA  166 (254)
T ss_pred             HHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence            88888732   1223467999999999999999974

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=4.1e-25  Score=205.45  Aligned_cols=148  Identities=24%  Similarity=0.273  Sum_probs=112.9

Q ss_pred             CCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc-----cCCCceeEeeeccccCcC
Q psy2684         175 LPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGKVLLEKVNFGLDME  249 (356)
Q Consensus       175 ~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~-----p~~G~i~~~g~~~~~~~~  249 (356)
                      .++++++++|+++.| +++.+|+++||+|.+||+++|+||||||||||+++|+|+++     |++|+|.++|.++.... 
T Consensus        35 ~~~~~l~i~~l~~~~-~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~-  112 (285)
T PRK14254         35 SGETVIEARDLNVFY-GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDAD-  112 (285)
T ss_pred             CCCceEEEEEEEEEE-CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc-
Confidence            356789999999999 45679999999999999999999999999999999999997     68999999987642100 


Q ss_pred             CeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC---HHHHHHH
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP---YEKSRRQ  323 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~---~~~~~~~  323 (356)
                                                  .. ....+.+++|++|++.  +++. ++.+++...   .+..   ..++.++
T Consensus       113 ----------------------------~~-~~~~~~~i~~v~q~~~--l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~  160 (285)
T PRK14254        113 ----------------------------VD-PVALRRRIGMVFQKPN--PFPK-SIYDNVAYGLKIQGYDGDIDERVEES  160 (285)
T ss_pred             ----------------------------cc-hHhhhccEEEEecCCc--cCcC-CHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence                                        00 0011347999999973  5554 888887532   1222   2346778


Q ss_pred             HhhcCCCCc---cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         324 LGMFGLPSY---AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       324 L~~~~l~~~---~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ++.+++...   ...+++.+|||||||||+||++++
T Consensus       161 l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~  196 (285)
T PRK14254        161 LRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIA  196 (285)
T ss_pred             HHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence            999988531   223467999999999999999974

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.92  E-value=1.5e-24  Score=236.00  Aligned_cols=177  Identities=20%  Similarity=0.275  Sum_probs=122.6

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHc---cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALF---LEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDI   75 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~---~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i   75 (356)
                      .++++.+|||||+||++||++|+   .+|++|||||||++||+.+++.|.++|+++   +.|||+||||++++ .+||++
T Consensus       803 l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i-~~aDrV  881 (1809)
T PRK00635        803 LGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVV-KVADYV  881 (1809)
T ss_pred             hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HhCCEE
Confidence            46789999999999999999997   699999999999999999999988888654   67999999999999 789999


Q ss_pred             EEEe------CCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccC
Q psy2684          76 IHLD------MKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDD  149 (356)
Q Consensus        76 ~~l~------~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (356)
                      ++|.      +|+++. .|+.+++....... ..             .+.              ...         ....
T Consensus       882 i~L~p~gg~~~G~iv~-~Gtpeel~~~~s~t-~~-------------~l~--------------~~l---------~~~~  923 (1809)
T PRK00635        882 LELGPEGGNLGGYLLA-SCSPEELIHLHTPT-AK-------------ALR--------------PYL---------SSPQ  923 (1809)
T ss_pred             EEEccCCCCCCCEEEE-eCCHHHHHhccCch-HH-------------HHH--------------HHh---------hccc
Confidence            9996      577764 56665543210000 00             000              000         0000


Q ss_pred             CCCchhhhcCCcceeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccc
Q psy2684         150 DDEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl  229 (356)
                        ....           . .+.  . ... +...++++.+ .....|+++||+|++|++++|+|+||||||||+..+  +
T Consensus       924 --~~~~-----------~-~~~--~-~~~-l~~~~i~i~~-~~~~~lk~isl~i~~gei~~itG~nGsGKStL~~~~--L  982 (1809)
T PRK00635        924 --ELPY-----------L-PDP--S-PKP-PVPADITIKN-AYQHNLKHIDLSLPRNALTAVTGPSASGKHSLVFDI--L  982 (1809)
T ss_pred             --cccc-----------c-ccc--c-ccc-cccceEEEec-cccccccceeEEecCCcEEEEECCCCCChhHHHHHH--H
Confidence              0000           0 000  0 001 2344555554 333469999999999999999999999999987766  3


Q ss_pred             cccCCCceeEe
Q psy2684         230 LTPNKGKVLLE  240 (356)
Q Consensus       230 ~~p~~G~i~~~  240 (356)
                      +.  .|.+.|.
T Consensus       983 ~~--~G~~~~~  991 (1809)
T PRK00635        983 YA--AGNIAYA  991 (1809)
T ss_pred             Hh--hccEeee
Confidence            32  6777543

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.92  E-value=2.4e-25  Score=195.02  Aligned_cols=134  Identities=31%  Similarity=0.431  Sum_probs=102.3

Q ss_pred             CCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCchhhHHHHHh
Q psy2684         191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK  270 (356)
Q Consensus       191 ~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~  270 (356)
                      +++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++....                      
T Consensus         3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~----------------------   60 (190)
T TIGR01166         3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSR----------------------   60 (190)
T ss_pred             CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccc----------------------
Confidence            4567999999999999999999999999999999999999999999999987652100                      


Q ss_pred             CCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcCCCCccccCCCCCCCh
Q psy2684         271 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSG  343 (356)
Q Consensus       271 g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSG  343 (356)
                             .. ....+..++|++|++...++ ..|+.+++...   .+...    +.+.++++.+|+....+ +++.+|||
T Consensus        61 -------~~-~~~~~~~i~~~~q~~~~~~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~  130 (190)
T TIGR01166        61 -------KG-LLERRQRVGLVFQDPDDQLF-AADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRE-RPTHCLSG  130 (190)
T ss_pred             -------cc-hHHHHhhEEEEecChhhccc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhh-CChhhCCH
Confidence                   00 00113469999998642344 46888887532   22222    34667899999987655 46799999


Q ss_pred             HHHHHHHHHHHcC
Q psy2684         344 GQKARVALAELTL  356 (356)
Q Consensus       344 GqkqRvalA~~~l  356 (356)
                      ||||||+||++++
T Consensus       131 G~~qrv~laral~  143 (190)
T TIGR01166       131 GEKKRVAIAGAVA  143 (190)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999974

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.92  E-value=4.5e-25  Score=194.13  Aligned_cols=137  Identities=23%  Similarity=0.287  Sum_probs=109.0

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      +++++|+++.| +++.+++ +||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++..            
T Consensus         1 ~l~~~~l~~~~-~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~------------   66 (195)
T PRK13541          1 MLSLHQLQFNI-EQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINN------------   66 (195)
T ss_pred             CeEEEEeeEEE-CCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccCh------------
Confidence            47899999999 4555665 999999999999999999999999999999999999999999865420            


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC--CCHHHHHHHHhhcCCCCccccC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN--LPYEKSRRQLGMFGLPSYAHTI  336 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~--~~~~~~~~~L~~~~l~~~~~~~  336 (356)
                                           .   ....++|++|++  .++...|+.+++.....  .....+.++++.+++..... +
T Consensus        67 ---------------------~---~~~~~~~~~~~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-~  119 (195)
T PRK13541         67 ---------------------I---AKPYCTYIGHNL--GLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLD-E  119 (195)
T ss_pred             ---------------------h---hhhhEEeccCCc--CCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhc-c
Confidence                                 0   012478999875  35667899998754221  13345677889999976554 4


Q ss_pred             CCCCCChHHHHHHHHHHHcC
Q psy2684         337 PIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       337 ~~~~LSGGqkqRvalA~~~l  356 (356)
                      ++.+||||||||++||++++
T Consensus       120 ~~~~LS~G~~~rl~la~al~  139 (195)
T PRK13541        120 KCYSLSSGMQKIVAIARLIA  139 (195)
T ss_pred             ChhhCCHHHHHHHHHHHHHh
Confidence            67999999999999999974

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.92  E-value=2.4e-25  Score=205.54  Aligned_cols=142  Identities=23%  Similarity=0.258  Sum_probs=110.9

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccC--------CCceeEeeeccccCcCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN--------KGKVLLEKVNFGLDMES  250 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~--------~G~i~~~g~~~~~~~~~  250 (356)
                      +++++|+++.| +++.+|+++||+|.+|++++|+||||||||||+++|+|+++|+        +|+|.++|.++...   
T Consensus         1 ml~~~nl~~~~-~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~---   76 (272)
T PRK13547          1 MLTADHLHVAR-RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAI---   76 (272)
T ss_pred             CeEEEEEEEEE-CCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccC---
Confidence            47899999999 5668999999999999999999999999999999999999998        99999998764210   


Q ss_pred             eeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-------C-C---CHHH
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-------N-L---PYEK  319 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-------~-~---~~~~  319 (356)
                                                  . ....+..++|++|++.  ++...|+.+++....       . .   ....
T Consensus        77 ----------------------------~-~~~~~~~~~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~  125 (272)
T PRK13547         77 ----------------------------D-APRLARLRAVLPQAAQ--PAFAFSAREIVLLGRYPHARRAGALTHRDGEI  125 (272)
T ss_pred             ----------------------------C-HHHHHhhcEEecccCC--CCCCCcHHHHHhhcccccccccccCCHHHHHH
Confidence                                        0 0001234799999863  334578998875321       0 1   1134


Q ss_pred             HHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         320 SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       320 ~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +.++++.+|+..... +++.+|||||+|||+||++++
T Consensus       126 ~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~laral~  161 (272)
T PRK13547        126 AWQALALAGATALVG-RDVTTLSGGELARVQFARVLA  161 (272)
T ss_pred             HHHHHHHcCcHhhhc-CCcccCCHHHHHHHHHHHHHh
Confidence            667899999987665 477999999999999999974

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.92  E-value=1.9e-25  Score=200.25  Aligned_cols=146  Identities=28%  Similarity=0.341  Sum_probs=113.0

Q ss_pred             cEEEecceeeeCCC---ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684         179 VLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV  255 (356)
Q Consensus       179 ~l~~~~l~~~~~~~---~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv  255 (356)
                      +++++|+++.|+++   ..+++++||++.+|++++|+|+||||||||+++|+|+++|++|+|.++|.++...        
T Consensus         1 ~l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~--------   72 (220)
T TIGR02982         1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGA--------   72 (220)
T ss_pred             CEEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhc--------
Confidence            36899999999532   5699999999999999999999999999999999999999999999998765210        


Q ss_pred             cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc----CCC----HHHHHHHHhhc
Q psy2684         256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF----NLP----YEKSRRQLGMF  327 (356)
Q Consensus       256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~----~~~----~~~~~~~L~~~  327 (356)
                                        .+.   .....+..++|++|++  .+++..|+.+++....    ...    ...+.++++.+
T Consensus        73 ------------------~~~---~~~~~~~~i~~~~q~~--~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~  129 (220)
T TIGR02982        73 ------------------SEK---ELVQLRRNIGYIFQAH--NLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAV  129 (220)
T ss_pred             ------------------CHh---HHHHHHhheEEEcCCh--hhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHc
Confidence                              000   0001134699999987  3677789988775321    122    23467789999


Q ss_pred             CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         328 GLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       328 ~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      |+.+.... ++.+||||||||++||++++
T Consensus       130 ~l~~~~~~-~~~~lS~G~~qrv~laral~  157 (220)
T TIGR02982       130 GLGDHLDY-YPHNLSGGQKQRVAIARALV  157 (220)
T ss_pred             CChhhhhc-ChhhCCHHHHHHHHHHHHHh
Confidence            99765554 67999999999999999974

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=2.9e-25  Score=205.73  Aligned_cols=144  Identities=26%  Similarity=0.346  Sum_probs=112.9

Q ss_pred             cEEEecceeeeCCC--ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684         179 VLGLHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG  256 (356)
Q Consensus       179 ~l~~~~l~~~~~~~--~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG  256 (356)
                      +++++|+++.|++.  ..+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++...         
T Consensus         4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~---------   74 (277)
T PRK13642          4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAE---------   74 (277)
T ss_pred             eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcC---------
Confidence            68999999999532  3589999999999999999999999999999999999999999999998765210         


Q ss_pred             CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcCC
Q psy2684         257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGL  329 (356)
Q Consensus       257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~l  329 (356)
                                            .. ...+..+||++|++. .++...|+.+++...   .+...    +.+..+++.+|+
T Consensus        75 ----------------------~~-~~~~~~i~~v~q~~~-~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l  130 (277)
T PRK13642         75 ----------------------NV-WNLRRKIGMVFQNPD-NQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNM  130 (277)
T ss_pred             ----------------------CH-HHHhcceEEEEECHH-HhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCC
Confidence                                  00 011346999999863 245567888887532   12232    235678899999


Q ss_pred             CCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         330 PSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       330 ~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ..... +++..|||||||||+||++++
T Consensus       131 ~~~~~-~~~~~LS~G~~qrv~lAraL~  156 (277)
T PRK13642        131 LDFKT-REPARLSGGQKQRVAVAGIIA  156 (277)
T ss_pred             HhHhh-CCcccCCHHHHHHHHHHHHHH
Confidence            76654 477999999999999999974

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.92  E-value=4.3e-25  Score=218.63  Aligned_cols=93  Identities=39%  Similarity=0.614  Sum_probs=90.2

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEEeCCe
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMKK   82 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l~~g~   82 (356)
                      .+++..||||||.|+.||+.++.+|.||||||||||||.++++.|++.|.+|.+|||+||||++|++++|++||++++ +
T Consensus       434 ~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~va~~i~~~~~-~  512 (530)
T COG0488         434 EKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDRVATRIWLVED-K  512 (530)
T ss_pred             hCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEcC-c
Confidence            578999999999999999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             EeEecCCHHHHHHH
Q psy2684          83 LFYYKGNFTLFKKM   96 (356)
Q Consensus        83 ~~~~~g~~~~~~~~   96 (356)
                      +..|.|+|++|.+.
T Consensus       513 ~~~~~g~y~~y~~~  526 (530)
T COG0488         513 VEEFEGGYEDYLEQ  526 (530)
T ss_pred             eeEcCCCHHHHHHh
Confidence            99999999999764

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.92  E-value=5.2e-25  Score=202.31  Aligned_cols=146  Identities=25%  Similarity=0.331  Sum_probs=110.9

Q ss_pred             CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc-----cCCCceeEeeeccccCcCCe
Q psy2684         177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGKVLLEKVNFGLDMESR  251 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~-----p~~G~i~~~g~~~~~~~~~~  251 (356)
                      ..+++++|+++.| ++..+|+++||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|.++....   
T Consensus        11 ~~~l~~~~l~~~~-~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~---   86 (260)
T PRK10744         11 PSKIQVRNLNFYY-GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK---   86 (260)
T ss_pred             CceEEEEEEEEEe-CCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccc---
Confidence            4579999999999 45679999999999999999999999999999999999986     58999999987652100   


Q ss_pred             eeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---c-CCCH----HHHHHH
Q psy2684         252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---F-NLPY----EKSRRQ  323 (356)
Q Consensus       252 ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~-~~~~----~~~~~~  323 (356)
                                                .. ....+.+++|++|++.  +++ .|+.+++...   . ..+.    +.+.++
T Consensus        87 --------------------------~~-~~~~~~~i~~~~q~~~--~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~  136 (260)
T PRK10744         87 --------------------------QD-IALLRAKVGMVFQKPT--PFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWA  136 (260)
T ss_pred             --------------------------cc-hHHHhcceEEEecCCc--cCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHH
Confidence                                      00 0011346999999873  555 7888887532   1 2222    346678


Q ss_pred             HhhcCCCC---ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         324 LGMFGLPS---YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       324 L~~~~l~~---~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ++.+++..   ....+++.+|||||+|||+||++++
T Consensus       137 l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~  172 (260)
T PRK10744        137 LTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIA  172 (260)
T ss_pred             HHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence            89998742   1223467999999999999999974

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=4.9e-25  Score=201.65  Aligned_cols=146  Identities=24%  Similarity=0.238  Sum_probs=111.5

Q ss_pred             CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc-----CCCceeEeeeccccCcCCee
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGKVLLEKVNFGLDMESRV  252 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p-----~~G~i~~~g~~~~~~~~~~i  252 (356)
                      ++++++|+++.| ++..+|+++||+|.+||+++|+||||||||||+++|+|+++|     ++|+|.++|.++...     
T Consensus         3 ~~l~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~-----   76 (253)
T PRK14267          3 FAIETVNLRVYY-GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSP-----   76 (253)
T ss_pred             ceEEEEeEEEEe-CCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccc-----
Confidence            468999999999 456799999999999999999999999999999999999987     499999998765200     


Q ss_pred             eeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC--CH----HHHHHH
Q psy2684         253 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL--PY----EKSRRQ  323 (356)
Q Consensus       253 alvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~--~~----~~~~~~  323 (356)
                                              ... ....+.+++|++|++  .+++..|+.+++...   .+.  ..    ..+.++
T Consensus        77 ------------------------~~~-~~~~~~~i~~~~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~  129 (253)
T PRK14267         77 ------------------------DVD-PIEVRREVGMVFQYP--NPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWA  129 (253)
T ss_pred             ------------------------ccC-hHHHhhceeEEecCC--ccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHH
Confidence                                    000 001134699999986  367788999987532   121  11    245678


Q ss_pred             HhhcCCCCc---cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         324 LGMFGLPSY---AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       324 L~~~~l~~~---~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ++.+++...   ...+++.+|||||||||+||++++
T Consensus       130 l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~  165 (253)
T PRK14267        130 LKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALA  165 (253)
T ss_pred             HHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHh
Confidence            888887531   223467999999999999999974

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.92  E-value=3.5e-25  Score=215.97  Aligned_cols=151  Identities=25%  Similarity=0.305  Sum_probs=119.7

Q ss_pred             CcEEEecceeeeCCC---ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccC----CCceeEeeeccccCcCC
Q psy2684         178 PVLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN----KGKVLLEKVNFGLDMES  250 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~---~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~----~G~i~~~g~~~~~~~~~  250 (356)
                      ++|+++|+++.|...   ..+++|+||+|.+||++||+|.|||||||+.++|.|++++.    +|+|.|+|.++...   
T Consensus         4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l---   80 (539)
T COG1123           4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGL---   80 (539)
T ss_pred             ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcC---
Confidence            489999999999532   25899999999999999999999999999999999999988    89999999765311   


Q ss_pred             eeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---C-CC----HHHHHH
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---N-LP----YEKSRR  322 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~-~~----~~~~~~  322 (356)
                             +                  .......+..+|+|+||++...|+|-+|+.+.+....   . .+    ..++.+
T Consensus        81 -------~------------------~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~e  135 (539)
T COG1123          81 -------S------------------EREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVE  135 (539)
T ss_pred             -------C------------------HHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHH
Confidence                   0                  0111122345799999999888999999987765432   1 22    245667


Q ss_pred             HHhhcCCCCcccc-CCCCCCChHHHHHHHHHHHcC
Q psy2684         323 QLGMFGLPSYAHT-IPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       323 ~L~~~~l~~~~~~-~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +|+.+|+++.... ++|++|||||||||.||++++
T Consensus       136 lL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa  170 (539)
T COG1123         136 LLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALA  170 (539)
T ss_pred             HHHHcCCCChhhhccCCcccCchHHHHHHHHHHHh
Confidence            8999999876653 467999999999999999874

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.92  E-value=4.8e-25  Score=220.61  Aligned_cols=144  Identities=26%  Similarity=0.390  Sum_probs=115.2

Q ss_pred             CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      ++++++|+++.| ++..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++....         
T Consensus         3 ~~l~~~~l~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~---------   72 (501)
T PRK11288          3 PYLSFDGIGKTF-PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFAS---------   72 (501)
T ss_pred             ceEEEeeeEEEE-CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCC---------
Confidence            579999999999 5567999999999999999999999999999999999999999999999987652100         


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-----C-CC----HHHHHHHHhhc
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-----N-LP----YEKSRRQLGMF  327 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-----~-~~----~~~~~~~L~~~  327 (356)
                                            .....+..+||++|++  .+++..|+.+++....     + ..    ...+.++++.+
T Consensus        73 ----------------------~~~~~~~~i~~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~  128 (501)
T PRK11288         73 ----------------------TTAALAAGVAIIYQEL--HLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHL  128 (501)
T ss_pred             ----------------------HHHHHhCCEEEEEech--hccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHc
Confidence                                  0001134699999986  4778889999875421     1 11    23467789999


Q ss_pred             CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         328 GLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       328 ~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      |+..... +++.+|||||||||+||++++
T Consensus       129 ~l~~~~~-~~~~~LSgGq~qrv~laral~  156 (501)
T PRK11288        129 GVDIDPD-TPLKYLSIGQRQMVEIAKALA  156 (501)
T ss_pred             CCCCCcC-CchhhCCHHHHHHHHHHHHHH
Confidence            9986554 477999999999999999974

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=5.3e-25  Score=202.01  Aligned_cols=146  Identities=25%  Similarity=0.287  Sum_probs=111.3

Q ss_pred             CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc-----CCCceeEeeeccccCcCCe
Q psy2684         177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGKVLLEKVNFGLDMESR  251 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p-----~~G~i~~~g~~~~~~~~~~  251 (356)
                      .++++++|+++.| +++.+|+++||+|.+|++++|+|+||||||||+++|+|+++|     ++|+|.++|.++....   
T Consensus        10 ~~~l~~~~l~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~---   85 (258)
T PRK14268         10 QPQIKVENLNLWY-GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPD---   85 (258)
T ss_pred             ceeEEEeeeEEEe-CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEccccc---
Confidence            4679999999999 456799999999999999999999999999999999999985     7999999987652100   


Q ss_pred             eeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHH
Q psy2684         252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQL  324 (356)
Q Consensus       252 ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L  324 (356)
                                                .. ....+..++|++|++.  +++ .|+.+++...   .+...    ..+.+++
T Consensus        86 --------------------------~~-~~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l  135 (258)
T PRK14268         86 --------------------------VD-VVELRKNVGMVFQKPN--PFP-MSIYDNVAYGPRIHGANKKDLDGVVENAL  135 (258)
T ss_pred             --------------------------ch-HHHHhhhEEEEecCCc--cCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence                                      00 0011346999999863  566 7998887532   22322    2356788


Q ss_pred             hhcCCCC---ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         325 GMFGLPS---YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       325 ~~~~l~~---~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +.+++..   ....+++.+|||||+|||+||++++
T Consensus       136 ~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~  170 (258)
T PRK14268        136 RSAALWDETSDRLKSPALSLSGGQQQRLCIARTLA  170 (258)
T ss_pred             HHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHH
Confidence            9888842   1223477999999999999999974

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.92  E-value=7e-25  Score=202.16  Aligned_cols=147  Identities=28%  Similarity=0.305  Sum_probs=111.6

Q ss_pred             CCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc-----CCCceeEeeeccccCcCC
Q psy2684         176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGKVLLEKVNFGLDMES  250 (356)
Q Consensus       176 ~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p-----~~G~i~~~g~~~~~~~~~  250 (356)
                      ..++++++|+++.| +++.+|+++||+|++|++++|+||||||||||+++|+|+++|     ++|+|.++|.++....  
T Consensus        16 ~~~~l~~~nl~~~~-~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~--   92 (267)
T PRK14235         16 TEIKMRARDVSVFY-GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR--   92 (267)
T ss_pred             CCceEEEEeEEEEE-CCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc--
Confidence            34579999999999 456799999999999999999999999999999999999975     8999999987652100  


Q ss_pred             eeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC--C----HHHHH
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL--P----YEKSR  321 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~--~----~~~~~  321 (356)
                                                 .. ....+..++|++|++.  +++ .|+.+++...   .+.  .    ...+.
T Consensus        93 ---------------------------~~-~~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~  141 (267)
T PRK14235         93 ---------------------------LD-VVELRARVGMVFQKPN--PFP-KSIYENVAYGPRIHGLARSKAELDEIVE  141 (267)
T ss_pred             ---------------------------cc-hHHHhhceEEEecCCC--CCC-CcHHHHHHHHHHhcccccchHHHHHHHH
Confidence                                       00 0011346999999873  555 4888887532   121  1    23456


Q ss_pred             HHHhhcCCCCc---cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         322 RQLGMFGLPSY---AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       322 ~~L~~~~l~~~---~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ++++.+++...   ...+++.+|||||||||+||++++
T Consensus       142 ~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~  179 (267)
T PRK14235        142 TSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIA  179 (267)
T ss_pred             HHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHH
Confidence            78999999541   223467999999999999999974

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.92  E-value=2.4e-26  Score=189.83  Aligned_cols=140  Identities=28%  Similarity=0.419  Sum_probs=112.3

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG  259 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG  259 (356)
                      ++++++.+.- ++.++|+++||++.+||+++|+||||||||||+++++.++.|++|.++|.|.++.--        +   
T Consensus         4 le~kq~~y~a-~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~--------~---   71 (223)
T COG4619           4 LELKQVGYLA-GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTL--------K---   71 (223)
T ss_pred             hHHHHHHhhc-CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCcccccc--------C---
Confidence            4566665554 566799999999999999999999999999999999999999999999999876310        0   


Q ss_pred             CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-----CCCHHHHHHHHhhcCCCCccc
Q psy2684         260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-----NLPYEKSRRQLGMFGLPSYAH  334 (356)
Q Consensus       260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-----~~~~~~~~~~L~~~~l~~~~~  334 (356)
                                           ....+.+|+|+.|.|.  +|++ |+.+++...+     ..+...+...|++|++++...
T Consensus        72 ---------------------pea~Rq~VsY~~Q~pa--Lfg~-tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L  127 (223)
T COG4619          72 ---------------------PEAYRQQVSYCAQTPA--LFGD-TVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSIL  127 (223)
T ss_pred             ---------------------hHHHHHHHHHHHcCcc--cccc-chhhccccchHHhccCCChHHHHHHHHHcCCchhhh
Confidence                                 0112567999999984  6655 6777764322     234566788999999998777


Q ss_pred             cCCCCCCChHHHHHHHHHHHc
Q psy2684         335 TIPIRDLSGGQKARVALAELT  355 (356)
Q Consensus       335 ~~~~~~LSGGqkqRvalA~~~  355 (356)
                      .+++.+|||||+||++|+|-|
T Consensus       128 ~k~it~lSGGE~QriAliR~L  148 (223)
T COG4619         128 TKNITELSGGEKQRIALIRNL  148 (223)
T ss_pred             cchhhhccchHHHHHHHHHHh
Confidence            778999999999999999965

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.92  E-value=6.3e-25  Score=201.52  Aligned_cols=145  Identities=26%  Similarity=0.312  Sum_probs=110.6

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc-----CCCceeEeeeccccCcCCeee
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGKVLLEKVNFGLDMESRVA  253 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p-----~~G~i~~~g~~~~~~~~~~ia  253 (356)
                      +++++|+++.| ++..+|+++||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++...      
T Consensus         4 ~l~i~~v~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~------   76 (258)
T PRK14241          4 RIDVKDLNIYY-GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGP------   76 (258)
T ss_pred             cEEEeeEEEEE-CCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecccc------
Confidence            58999999999 456799999999999999999999999999999999999974     799999998765200      


Q ss_pred             eecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CC-CH----HHHHHHHh
Q psy2684         254 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NL-PY----EKSRRQLG  325 (356)
Q Consensus       254 lvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~-~~----~~~~~~L~  325 (356)
                                           ..  . ....+..++|++|++  .+++..|+.+++....   .. ..    +.+.++++
T Consensus        77 ---------------------~~--~-~~~~~~~i~~~~q~~--~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~  130 (258)
T PRK14241         77 ---------------------GV--D-PVAVRRTIGMVFQRP--NPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLR  130 (258)
T ss_pred             ---------------------cc--C-hHHHhcceEEEcccc--ccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence                                 00  0 001134699999986  3677889999875321   21 11    23566788


Q ss_pred             hcCCCC---ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         326 MFGLPS---YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       326 ~~~l~~---~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .+|+..   ....+++.+|||||||||+||++++
T Consensus       131 ~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~  164 (258)
T PRK14241        131 GANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIA  164 (258)
T ss_pred             HcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence            888842   1233577999999999999999974

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.92  E-value=5.3e-25  Score=198.91  Aligned_cols=139  Identities=32%  Similarity=0.474  Sum_probs=111.9

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG  259 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG  259 (356)
                      +.++|+++.| +++.+++++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.++...            
T Consensus         1 l~~~~l~~~~-~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~------------   67 (232)
T cd03300           1 IELENVSKFY-GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNL------------   67 (232)
T ss_pred             CEEEeEEEEe-CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcC------------
Confidence            4689999999 456799999999999999999999999999999999999999999999998765310            


Q ss_pred             CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCC----HHHHHHHHhhcCCCCc
Q psy2684         260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLP----YEKSRRQLGMFGLPSY  332 (356)
Q Consensus       260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~----~~~~~~~L~~~~l~~~  332 (356)
                                         .   ..+..++|++|++  .+++..|+.+++....   +..    ...+..+++.+|+.+.
T Consensus        68 -------------------~---~~~~~i~~~~q~~--~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~  123 (232)
T cd03300          68 -------------------P---PHKRPVNTVFQNY--ALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGY  123 (232)
T ss_pred             -------------------C---hhhcceEEEeccc--ccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh
Confidence                               0   0124689999986  3667788988875321   222    2346678999999876


Q ss_pred             cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         333 AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       333 ~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ... .+..|||||+|||+||++++
T Consensus       124 ~~~-~~~~lS~G~~qrl~laral~  146 (232)
T cd03300         124 ANR-KPSQLSGGQQQRVAIARALV  146 (232)
T ss_pred             hcC-ChhhCCHHHHHHHHHHHHHh
Confidence            654 66999999999999999974

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.92  E-value=8.4e-26  Score=191.90  Aligned_cols=142  Identities=27%  Similarity=0.347  Sum_probs=116.0

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      |+++.+++++|+.-..+++|+||+++.|+++||+|||||||||+|++|++++.|++|+|+++|.+....+          
T Consensus         1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p----------   70 (245)
T COG4555           1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDP----------   70 (245)
T ss_pred             CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccCh----------
Confidence            5789999999954334999999999999999999999999999999999999999999999998863210          


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHH---hcCCCH----HHHHHHHhhcCCCC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK---LFNLPY----EKSRRQLGMFGLPS  331 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~---~~~~~~----~~~~~~L~~~~l~~  331 (356)
                                             ...+++||.++-.  ..++..+|+.|++..   .+++..    .++.++.+.|++..
T Consensus        71 -----------------------~~vrr~IGVl~~e--~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~  125 (245)
T COG4555          71 -----------------------SFVRRKIGVLFGE--RGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLE  125 (245)
T ss_pred             -----------------------HHHhhhcceecCC--cChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHH
Confidence                                   1124578888833  358899999998754   344443    34567888999988


Q ss_pred             ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         332 YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       332 ~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ..++ .+..||-|+||||+|||+++
T Consensus       126 ~~~r-Rv~~~S~G~kqkV~iARAlv  149 (245)
T COG4555         126 YLDR-RVGEFSTGMKQKVAIARALV  149 (245)
T ss_pred             HHHH-HHhhhchhhHHHHHHHHHHh
Confidence            8776 57999999999999999974

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=6.6e-25  Score=202.55  Aligned_cols=146  Identities=27%  Similarity=0.282  Sum_probs=110.0

Q ss_pred             CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc-----cCCCceeEeeeccccCcCCe
Q psy2684         177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGKVLLEKVNFGLDMESR  251 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~-----p~~G~i~~~g~~~~~~~~~~  251 (356)
                      .++++++|+++.| ++..+|+++||+|.+||+++|+||||||||||+++|+|+++     |++|+|.++|.++....   
T Consensus        11 ~~~l~i~nl~~~~-~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~---   86 (269)
T PRK14259         11 NIIISLQNVTISY-GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR---   86 (269)
T ss_pred             CceEEEEeEEEEE-CCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc---
Confidence            4679999999999 55679999999999999999999999999999999999987     68999999987642000   


Q ss_pred             eeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCC---HHHHHHHHh
Q psy2684         252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLP---YEKSRRQLG  325 (356)
Q Consensus       252 ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~---~~~~~~~L~  325 (356)
                                                ... ...+.+++|++|++.  +++ .|+.+++....   +..   .+.+.++++
T Consensus        87 --------------------------~~~-~~~~~~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~  136 (269)
T PRK14259         87 --------------------------VDP-VEVRRRIGMVFQQPN--PFP-KSIYENIAFGARINGYTGDMDELVERSLR  136 (269)
T ss_pred             --------------------------CCH-HHHhhceEEEccCCc--cch-hhHHHHHhhhhhhcCCcHHHHHHHHHHHH
Confidence                                      000 001246999999873  565 48988875321   111   234566788


Q ss_pred             hcCCCC---ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         326 MFGLPS---YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       326 ~~~l~~---~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .+++..   ....+++.+|||||||||+||++++
T Consensus       137 ~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~  170 (269)
T PRK14259        137 KAAVWDECKDKLNESGYSLSGGQQQRLCIARTIA  170 (269)
T ss_pred             HhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHh
Confidence            887632   1223467999999999999999974

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.92  E-value=4.6e-25  Score=225.12  Aligned_cols=143  Identities=29%  Similarity=0.410  Sum_probs=110.9

Q ss_pred             cEEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         179 VLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       179 ~l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      -++++|++|+|... ..+|+|+||+|++||++||+|+||||||||+|+|.|+++|++|+|.+||.|+..           
T Consensus       471 ~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~-----------  539 (709)
T COG2274         471 EIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLND-----------  539 (709)
T ss_pred             eEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHh-----------
Confidence            48999999999654 359999999999999999999999999999999999999999999999998741           


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHhhcCCCCccccC
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAHTI  336 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-~~~~~~~~~~~L~~~~l~~~~~~~  336 (356)
                        ..+.                   ..|+.||||+|++   ++-+-|+.|++... ...+.+++.+.+...|...+....
T Consensus       540 --i~~~-------------------~lR~~ig~V~Q~~---~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~l  595 (709)
T COG2274         540 --IDLA-------------------SLRRQVGYVLQDP---FLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENL  595 (709)
T ss_pred             --cCHH-------------------HHHhheeEEcccc---hhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhc
Confidence              1111                   1256899999997   33466899988654 345556666665555543322211


Q ss_pred             ----------CCCCCChHHHHHHHHHHHcC
Q psy2684         337 ----------PIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       337 ----------~~~~LSGGqkqRvalA~~~l  356 (356)
                                .-..||||||||++|||+++
T Consensus       596 P~gy~t~v~E~G~~LSGGQrQrlalARaLl  625 (709)
T COG2274         596 PMGYDTPVGEGGANLSGGQRQRLALARALL  625 (709)
T ss_pred             ccccccccccCCCCCCHHHHHHHHHHHHhc
Confidence                      23579999999999999975

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.92  E-value=3.4e-25  Score=198.62  Aligned_cols=142  Identities=25%  Similarity=0.324  Sum_probs=107.6

Q ss_pred             EEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         180 LGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       180 l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      ++++|+++.|+++ +.+++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...           
T Consensus         3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~-----------   71 (221)
T cd03244           3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKI-----------   71 (221)
T ss_pred             EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhC-----------
Confidence            6899999999543 4799999999999999999999999999999999999999999999998764210           


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCccc----
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAH----  334 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~----  334 (356)
                                          . ....+..++|++|++.  +++ .|+.+++.........++.+.++.+++.+...    
T Consensus        72 --------------------~-~~~~~~~i~~~~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  127 (221)
T cd03244          72 --------------------G-LHDLRSRISIIPQDPV--LFS-GTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPG  127 (221)
T ss_pred             --------------------C-HHHHhhhEEEECCCCc--ccc-chHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhccc
Confidence                                0 0011346999999974  554 58888874322234445566666666543221    


Q ss_pred             ------cCCCCCCChHHHHHHHHHHHcC
Q psy2684         335 ------TIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       335 ------~~~~~~LSGGqkqRvalA~~~l  356 (356)
                            ..++..|||||+|||+||++++
T Consensus       128 ~l~~~~~~~~~~LS~G~~qr~~laral~  155 (221)
T cd03244         128 GLDTVVEEGGENLSVGQRQLLCLARALL  155 (221)
T ss_pred             ccccccccCCCcCCHHHHHHHHHHHHHh
Confidence                  2367899999999999999974

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=3.3e-25  Score=186.54  Aligned_cols=141  Identities=28%  Similarity=0.382  Sum_probs=113.3

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      +++.+|++... ++..+|.++||++.+||.+-|.||||||||||+|+|+|+..|++|+|+++|..+.....         
T Consensus         2 ~L~a~~L~~~R-~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~---------   71 (209)
T COG4133           2 MLEAENLSCER-GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRE---------   71 (209)
T ss_pred             cchhhhhhhcc-CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchh---------
Confidence            46788999888 67789999999999999999999999999999999999999999999999766532111         


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cC-CCHHHHHHHHhhcCCCCccc
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FN-LPYEKSRRQLGMFGLPSYAH  334 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~-~~~~~~~~~L~~~~l~~~~~  334 (356)
                          |                    ....+-|+--.+  .+-+++|+.|++...   .+ .+...+++.++.+|+....+
T Consensus        72 ----~--------------------~~~~l~yLGH~~--giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~d  125 (209)
T COG4133          72 ----S--------------------YHQALLYLGHQP--GIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLED  125 (209)
T ss_pred             ----h--------------------HHHHHHHhhccc--cccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccc
Confidence                0                    112233444333  367788999998643   23 35677899999999998877


Q ss_pred             cCCCCCCChHHHHHHHHHHHcC
Q psy2684         335 TIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       335 ~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      - |+++||-|||+||||||+.+
T Consensus       126 l-p~~~LSAGQqRRvAlArL~l  146 (209)
T COG4133         126 L-PVGQLSAGQQRRVALARLWL  146 (209)
T ss_pred             c-chhhcchhHHHHHHHHHHHc
Confidence            5 99999999999999999864

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=1e-24  Score=201.30  Aligned_cols=147  Identities=24%  Similarity=0.306  Sum_probs=110.1

Q ss_pred             CCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc-----cCCCceeEeeeccccCcCC
Q psy2684         176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGKVLLEKVNFGLDMES  250 (356)
Q Consensus       176 ~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~-----p~~G~i~~~g~~~~~~~~~  250 (356)
                      ++++++++|+++.| ++..+|+++||+|.+|++++|+|+||||||||+++|+|+++     |++|+|.++|.++....  
T Consensus        18 ~~~~l~~~~l~~~~-~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~--   94 (268)
T PRK14248         18 KEHILEVKDLSIYY-GEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSN--   94 (268)
T ss_pred             CCceEEEEEEEEEe-CCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccc--
Confidence            35689999999999 45679999999999999999999999999999999999865     79999999987652100  


Q ss_pred             eeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC-C----HHHHHH
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-P----YEKSRR  322 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~-~----~~~~~~  322 (356)
                                                 .. ....+.+++|++|++.  +++. |+.+++...   ... .    ...+.+
T Consensus        95 ---------------------------~~-~~~~~~~i~~v~q~~~--~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~  143 (268)
T PRK14248         95 ---------------------------IN-VVNLRREIGMVFQKPN--PFPK-SIYNNITHALKYAGERRKSVLDEIVEE  143 (268)
T ss_pred             ---------------------------cc-HHHHhccEEEEecCCc--cCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence                                       00 0011346999999863  5554 888887532   111 1    123566


Q ss_pred             HHhhcCCCC---ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         323 QLGMFGLPS---YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       323 ~L~~~~l~~---~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .+..+++..   ....+++.+||||||||++||++++
T Consensus       144 ~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~  180 (268)
T PRK14248        144 SLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLA  180 (268)
T ss_pred             HHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHh
Confidence            788888742   1223477999999999999999974

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.92  E-value=5.3e-25  Score=210.91  Aligned_cols=142  Identities=25%  Similarity=0.309  Sum_probs=109.8

Q ss_pred             ecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeec----cccCcCCeeeeecCC
Q psy2684         183 HDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN----FGLDMESRVALVGPN  258 (356)
Q Consensus       183 ~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~----~~~~~~~~ialvG~n  258 (356)
                      .++.+.| +...+++++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.+    +...           
T Consensus        28 ~~~~~~~-g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~-----------   95 (382)
T TIGR03415        28 EEILDET-GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANC-----------   95 (382)
T ss_pred             HHHHHhh-CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccC-----------
Confidence            4556677 66779999999999999999999999999999999999999999999999752    2100           


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCCH----HHHHHHHhhcCCCC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLPY----EKSRRQLGMFGLPS  331 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~~----~~~~~~L~~~~l~~  331 (356)
                                       ....+...++.+++|+||++  .+++..|+.+++....   +.+.    ..+.++++.+|+.+
T Consensus        96 -----------------~~~~l~~~r~~~i~~vfQ~~--~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~  156 (382)
T TIGR03415        96 -----------------DAATLRRLRTHRVSMVFQKF--ALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQ  156 (382)
T ss_pred             -----------------CHHHHHHHhcCCEEEEECCC--cCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch
Confidence                             00001111124699999987  4788899999986432   3322    34678899999987


Q ss_pred             ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         332 YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       332 ~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ..+. ++.+|||||||||+|||+++
T Consensus       157 ~~~~-~~~~LSgGq~QRV~LARALa  180 (382)
T TIGR03415       157 WADK-KPGELSGGMQQRVGLARAFA  180 (382)
T ss_pred             hhcC-ChhhCCHHHHHHHHHHHHHh
Confidence            6654 67999999999999999974

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=5.1e-25  Score=200.74  Aligned_cols=142  Identities=23%  Similarity=0.257  Sum_probs=109.0

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc---cCCCceeEeeeccccCcCCeeeee
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT---PNKGKVLLEKVNFGLDMESRVALV  255 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~---p~~G~i~~~g~~~~~~~~~~ialv  255 (356)
                      +++++|+++.| +++.+|+++||+|.+||+++|+||||||||||+++|+|+++   |++|+|.++|.++...        
T Consensus         2 ~~~~~~l~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~--------   72 (246)
T PRK14269          2 IAKTTNLNLFY-GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQ--------   72 (246)
T ss_pred             ceeeeeeEEEE-CCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccC--------
Confidence            47899999999 45679999999999999999999999999999999999984   7999999998775310        


Q ss_pred             cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC--C----HHHHHHHHhh
Q psy2684         256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL--P----YEKSRRQLGM  326 (356)
Q Consensus       256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~--~----~~~~~~~L~~  326 (356)
                                            .  ....+..++|++|++.  +++ .|+.+++...   .+.  .    ...+.++++.
T Consensus        73 ----------------------~--~~~~~~~i~~~~q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~  125 (246)
T PRK14269         73 ----------------------D--VVALRKNVGMVFQQPN--VFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQK  125 (246)
T ss_pred             ----------------------C--HHHHhhhEEEEecCCc--ccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHH
Confidence                                  0  0011346999999873  555 5898887432   111  1    1235678999


Q ss_pred             cCCCCc---cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         327 FGLPSY---AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       327 ~~l~~~---~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +++...   ...+++.+|||||||||+||++++
T Consensus       126 ~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~  158 (246)
T PRK14269        126 VGLFEEVKDKLKQNALALSGGQQQRLCIARALA  158 (246)
T ss_pred             cCCChhhhHHhcCCcccCCHHHHHHHHHHHHHh
Confidence            999531   223467899999999999999974

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.92  E-value=8e-25  Score=204.07  Aligned_cols=150  Identities=25%  Similarity=0.309  Sum_probs=110.1

Q ss_pred             cEEEecceeeeCCC----ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeee
Q psy2684         179 VLGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVAL  254 (356)
Q Consensus       179 ~l~~~~l~~~~~~~----~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ial  254 (356)
                      .++++|+++.|++.    ..+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++.....     
T Consensus         6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~-----   80 (289)
T PRK13645          6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLK-----   80 (289)
T ss_pred             eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccc-----
Confidence            48999999999532    249999999999999999999999999999999999999999999999876521000     


Q ss_pred             ecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhc
Q psy2684         255 VGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMF  327 (356)
Q Consensus       255 vG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~  327 (356)
                             +            .  .. ....+..++|++|++...+++ .|+.+++...   .+...    ..+.++++.+
T Consensus        81 -------~------------~--~~-~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~  137 (289)
T PRK13645         81 -------K------------I--KE-VKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLGENKQEAYKKVPELLKLV  137 (289)
T ss_pred             -------c------------c--cc-HHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence                   0            0  00 001134699999986433443 5888877432   12222    2356788999


Q ss_pred             CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         328 GLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       328 ~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +++.....+++.+|||||||||+||++++
T Consensus       138 ~L~~~~~~~~~~~LS~Gq~qrv~laral~  166 (289)
T PRK13645        138 QLPEDYVKRSPFELSGGQKRRVALAGIIA  166 (289)
T ss_pred             CCChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence            99532334577999999999999999974

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.92  E-value=6.5e-25  Score=198.68  Aligned_cols=138  Identities=24%  Similarity=0.370  Sum_probs=110.7

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG  259 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG  259 (356)
                      ++++|+++.|+ +. +++++||+|.+||+++|+|+||||||||+++|+|+++|++|+|+++|.++...            
T Consensus         1 l~~~~l~~~~~-~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~------------   66 (235)
T cd03299           1 LKVENLSKDWK-EF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNL------------   66 (235)
T ss_pred             CeeEeEEEEeC-Cc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcC------------
Confidence            46889999994 43 89999999999999999999999999999999999999999999998765310            


Q ss_pred             CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCC----HHHHHHHHhhcCCCCc
Q psy2684         260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLP----YEKSRRQLGMFGLPSY  332 (356)
Q Consensus       260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~----~~~~~~~L~~~~l~~~  332 (356)
                                         .   ..+..++|++|++  .+++..|+.+++....   +..    .+.+.++++.+|+...
T Consensus        67 -------------------~---~~~~~i~~~~q~~--~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~  122 (235)
T cd03299          67 -------------------P---PEKRDISYVPQNY--ALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHL  122 (235)
T ss_pred             -------------------C---hhHcCEEEEeecC--ccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhH
Confidence                               0   0124699999986  4777889988875321   222    2345678999999876


Q ss_pred             cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         333 AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       333 ~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ... ++.+|||||+|||+||++++
T Consensus       123 ~~~-~~~~LS~G~~qrl~laral~  145 (235)
T cd03299         123 LNR-KPETLSGGEQQRVAIARALV  145 (235)
T ss_pred             Hhc-CcccCCHHHHHHHHHHHHHH
Confidence            654 67999999999999999974

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.92  E-value=8.3e-25  Score=209.25  Aligned_cols=139  Identities=26%  Similarity=0.341  Sum_probs=107.8

Q ss_pred             cceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCchh
Q psy2684         184 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKS  263 (356)
Q Consensus       184 ~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKs  263 (356)
                      |+++.| ++.. + ++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++....               
T Consensus         4 ~l~~~~-~~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~---------------   65 (354)
T TIGR02142         4 RFSKRL-GDFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSR---------------   65 (354)
T ss_pred             EEEEEE-CCEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCc---------------
Confidence            789999 4444 4 899999999999999999999999999999999999999999987653100               


Q ss_pred             hHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCC----HHHHHHHHhhcCCCCccccCCC
Q psy2684         264 TFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLP----YEKSRRQLGMFGLPSYAHTIPI  338 (356)
Q Consensus       264 Tll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~----~~~~~~~L~~~~l~~~~~~~~~  338 (356)
                                   ........+.+++|++|++  .+++.+|+.+++.... ...    ...+.++++.+|+.+..+. ++
T Consensus        66 -------------~~~~~~~~~~~i~~v~q~~--~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~  129 (354)
T TIGR02142        66 -------------KGIFLPPEKRRIGYVFQEA--RLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGR-LP  129 (354)
T ss_pred             -------------cccccchhhCCeEEEecCC--ccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcC-Ch
Confidence                         0000001134699999986  4788899999875421 111    2346788999999876654 67


Q ss_pred             CCCChHHHHHHHHHHHcC
Q psy2684         339 RDLSGGQKARVALAELTL  356 (356)
Q Consensus       339 ~~LSGGqkqRvalA~~~l  356 (356)
                      .+|||||||||+||++++
T Consensus       130 ~~LSgGqkqRvalAraL~  147 (354)
T TIGR02142       130 GRLSGGEKQRVAIGRALL  147 (354)
T ss_pred             hhCCHHHHHHHHHHHHHH
Confidence            999999999999999974

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>KOG0058|consensus

Probab=99.91  E-value=2.8e-25  Score=219.99  Aligned_cols=143  Identities=34%  Similarity=0.451  Sum_probs=108.8

Q ss_pred             CcEEEecceeeeCCC--ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684         178 PVLGLHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV  255 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~--~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv  255 (356)
                      -.++++||+|.||..  .++|+|+||+|++||++|||||||+||||+.++|..+|.|++|+|.+||+++..-        
T Consensus       464 G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~--------  535 (716)
T KOG0058|consen  464 GVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDI--------  535 (716)
T ss_pred             ceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhc--------
Confidence            358999999999743  4699999999999999999999999999999999999999999999999987410        


Q ss_pred             cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHhhcC------
Q psy2684         256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFG------  328 (356)
Q Consensus       256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~L~~~~------  328 (356)
                                        .      ....+.+||+|.|+|-  +| .-|+.||+.... +.+.+++....++-+      
T Consensus       536 ------------------~------~~~lr~~Ig~V~QEPv--LF-s~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~  588 (716)
T KOG0058|consen  536 ------------------N------HKYLRRKIGLVGQEPV--LF-SGSIRENIAYGLDNATDEEIEAAAKMANAHEFIT  588 (716)
T ss_pred             ------------------C------HHHHHHHeeeeeccce--ee-cccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHH
Confidence                              0      1112468999999983  44 568999986533 345555554433222      


Q ss_pred             -CCC----ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         329 -LPS----YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       329 -l~~----~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                       +++    .-.. +-.+||||||||+||||+|+
T Consensus       589 ~~p~gY~T~VGE-kG~qLSGGQKQRIAIARALl  620 (716)
T KOG0058|consen  589 NFPDGYNTVVGE-KGSQLSGGQKQRIAIARALL  620 (716)
T ss_pred             hCccccccccCC-ccccccchHHHHHHHHHHHh
Confidence             221    1122 23589999999999999985

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.91  E-value=1.4e-24  Score=194.22  Aligned_cols=145  Identities=21%  Similarity=0.222  Sum_probs=106.6

Q ss_pred             EEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCC
Q psy2684         181 GLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGI  260 (356)
Q Consensus       181 ~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~  260 (356)
                      .+.|+.+.|+++..+++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...             
T Consensus         2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-------------   68 (218)
T cd03290           2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEP-------------   68 (218)
T ss_pred             eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccc-------------
Confidence            5788999996566799999999999999999999999999999999999999999999988654210             


Q ss_pred             chhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCcc-------
Q psy2684         261 GKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYA-------  333 (356)
Q Consensus       261 GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~-------  333 (356)
                                   .+  .......+..++|++|++.  ++ ..|+.+++...........++.++.+++.+..       
T Consensus        69 -------------~~--~~~~~~~~~~i~~~~q~~~--~~-~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  130 (218)
T cd03290          69 -------------SF--EATRSRNRYSVAYAAQKPW--LL-NATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGD  130 (218)
T ss_pred             -------------cc--cccchhhcceEEEEcCCCc--cc-cccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCcc
Confidence                         00  0000112346999999873  45 56888887543223333445566666653211       


Q ss_pred             ---ccCCCCCCChHHHHHHHHHHHcC
Q psy2684         334 ---HTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       334 ---~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                         ...++..|||||||||+||++++
T Consensus       131 ~~~~~~~~~~LS~G~~qrv~laral~  156 (218)
T cd03290         131 QTEIGERGINLSGGQRQRICVARALY  156 (218)
T ss_pred             ccCcccCCCcCCHHHHHHHHHHHHHh
Confidence               12357899999999999999974

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.91  E-value=1.1e-24  Score=196.71  Aligned_cols=97  Identities=27%  Similarity=0.402  Sum_probs=85.8

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH----HhcCcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYL----QTWKKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l----~~~~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||||||+|||||+.+|+|||.||||++|||.+.+.+.++|    ++++.||++|||.++.+.++||||++
T Consensus       135 ~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVav  214 (339)
T COG1135         135 ADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAV  214 (339)
T ss_pred             hccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheE
Confidence            57899999999999999999999999999999999999999876655544    45789999999999999999999999


Q ss_pred             EeCCeEeEecCCHHHHHHHHH
Q psy2684          78 LDMKKLFYYKGNFTLFKKMYV   98 (356)
Q Consensus        78 l~~g~~~~~~g~~~~~~~~~~   98 (356)
                      |++|++++.+.-++.|..++.
T Consensus       215 m~~G~lvE~G~v~~vF~~Pk~  235 (339)
T COG1135         215 LDQGRLVEEGTVSEVFANPKH  235 (339)
T ss_pred             eeCCEEEEeccHHHhhcCcch
Confidence            999999997766677765433

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.91  E-value=9.5e-25  Score=218.57  Aligned_cols=144  Identities=24%  Similarity=0.368  Sum_probs=113.4

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc--CCCceeEeeeccccCcCCeeeeec
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP--NKGKVLLEKVNFGLDMESRVALVG  256 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p--~~G~i~~~g~~~~~~~~~~ialvG  256 (356)
                      +++++|+++.| +++.+|+++||+|.+|++++|+||||||||||+++|+|+++|  ++|+|.++|.++...         
T Consensus         1 ~l~i~~l~~~~-~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~---------   70 (500)
T TIGR02633         1 LLEMKGIVKTF-GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKAS---------   70 (500)
T ss_pred             CEEEEeEEEEe-CCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCC---------
Confidence            47899999999 566799999999999999999999999999999999999987  799999998765210         


Q ss_pred             CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC-------CC----HHHHHHHHh
Q psy2684         257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN-------LP----YEKSRRQLG  325 (356)
Q Consensus       257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~-------~~----~~~~~~~L~  325 (356)
                                            ......+.++||++|++  .+++..|+.+++.....       ..    ...+.++++
T Consensus        71 ----------------------~~~~~~~~~i~~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~  126 (500)
T TIGR02633        71 ----------------------NIRDTERAGIVIIHQEL--TLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLR  126 (500)
T ss_pred             ----------------------CHHHHHhCCEEEEeecc--ccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHH
Confidence                                  00000124699999986  36788899998753211       11    134667899


Q ss_pred             hcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         326 MFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       326 ~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .+++.....++++.+|||||||||+||++++
T Consensus       127 ~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~  157 (500)
T TIGR02633       127 ELQLDADNVTRPVGDYGGGQQQLVEIAKALN  157 (500)
T ss_pred             HcCCCCCcccCchhhCCHHHHHHHHHHHHHh
Confidence            9999865444578999999999999999974

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.91  E-value=6e-25  Score=196.89  Aligned_cols=142  Identities=32%  Similarity=0.444  Sum_probs=108.2

Q ss_pred             EEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         180 LGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       180 l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      ++++|+++.|++. ..+++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...           
T Consensus         3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-----------   71 (220)
T cd03245           3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQL-----------   71 (220)
T ss_pred             EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHC-----------
Confidence            6899999999532 5699999999999999999999999999999999999999999999988654200           


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHhhcCCCCccccC-
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYAHTI-  336 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~L~~~~l~~~~~~~-  336 (356)
                                     .+      ...+..++|++|++.  +++ .|+.+++.... ......+.++++.+++.+..... 
T Consensus        72 ---------------~~------~~~~~~i~~~~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~  127 (220)
T cd03245          72 ---------------DP------ADLRRNIGYVPQDVT--LFY-GTLRDNITLGAPLADDERILRAAELAGVTDFVNKHP  127 (220)
T ss_pred             ---------------CH------HHHHhhEEEeCCCCc--ccc-chHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhcc
Confidence                           00      001236899999873  454 58888875322 12344566778888886544332 


Q ss_pred             ---------CCCCCChHHHHHHHHHHHcC
Q psy2684         337 ---------PIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       337 ---------~~~~LSGGqkqRvalA~~~l  356 (356)
                               ++.+|||||||||+||++++
T Consensus       128 ~~~~~~~~~~~~~LSgG~~qrl~la~al~  156 (220)
T cd03245         128 NGLDLQIGERGRGLSGGQRQAVALARALL  156 (220)
T ss_pred             ccccceecCCCccCCHHHHHHHHHHHHHh
Confidence                     24699999999999999974

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.91  E-value=1.8e-24  Score=199.52  Aligned_cols=147  Identities=23%  Similarity=0.278  Sum_probs=111.0

Q ss_pred             CCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc-----cCCCceeEeeeccccCcCC
Q psy2684         176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGKVLLEKVNFGLDMES  250 (356)
Q Consensus       176 ~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~-----p~~G~i~~~g~~~~~~~~~  250 (356)
                      ..++++++|+++.| +++.+|+++||+|.+||+++|+||||||||||+++|+|+++     |++|+|.++|.++....  
T Consensus        17 ~~~~l~~~nl~~~~-~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~--   93 (267)
T PRK14237         17 EEIALSTKDLHVYY-GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKE--   93 (267)
T ss_pred             CCeEEEEeeEEEEE-CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEccccc--
Confidence            34579999999999 56789999999999999999999999999999999999997     58999999987652100  


Q ss_pred             eeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CC-CH----HHHHH
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NL-PY----EKSRR  322 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~-~~----~~~~~  322 (356)
                                                 .. ....+..++|++|++.  +++ .|+.+++....   +. ..    ..+.+
T Consensus        94 ---------------------------~~-~~~~~~~i~~v~q~~~--~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~  142 (267)
T PRK14237         94 ---------------------------IN-VYEMRKHIGMVFQRPN--PFA-KSIYENITFALERAGVKDKKVLDEIVET  142 (267)
T ss_pred             ---------------------------CC-hHHHhcceEEEecCCc--ccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHH
Confidence                                       00 0011346999999863  555 58999875421   21 11    33556


Q ss_pred             HHhhcCCCC---ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         323 QLGMFGLPS---YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       323 ~L~~~~l~~---~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +++.+++..   ....+++.+|||||+||++||++++
T Consensus       143 ~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~  179 (267)
T PRK14237        143 SLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIA  179 (267)
T ss_pred             HHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHh
Confidence            788888852   1223577999999999999999974

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=1.8e-24  Score=197.83  Aligned_cols=145  Identities=24%  Similarity=0.302  Sum_probs=110.7

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc--c---CCCceeEeeeccccCcCCeee
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT--P---NKGKVLLEKVNFGLDMESRVA  253 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~--p---~~G~i~~~g~~~~~~~~~~ia  253 (356)
                      .++++|+++.| ++..+|+|+||+|.+||+++|+|+||||||||+++|+|+++  |   ++|+|.++|.++....     
T Consensus         4 ~l~~~nl~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~-----   77 (252)
T PRK14256          4 KVKLEQLNVHF-GKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRG-----   77 (252)
T ss_pred             EEEEEEEEEEe-CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEccccc-----
Confidence            58999999999 45679999999999999999999999999999999999986  4   6899999987652100     


Q ss_pred             eecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cC-CC----HHHHHHHHh
Q psy2684         254 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FN-LP----YEKSRRQLG  325 (356)
Q Consensus       254 lvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~-~~----~~~~~~~L~  325 (356)
                                              ... ...+..++|++|++  .+++..|+.+++...   .+ ..    ...+.++++
T Consensus        78 ------------------------~~~-~~~~~~i~~~~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~  130 (252)
T PRK14256         78 ------------------------VDP-VSIRRRVGMVFQKP--NPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLK  130 (252)
T ss_pred             ------------------------CCh-HHhhccEEEEecCC--CCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHH
Confidence                                    000 01234699999986  377788999887532   12 11    134567788


Q ss_pred             hcCCCCc---cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         326 MFGLPSY---AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       326 ~~~l~~~---~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .+++...   ....++.+|||||||||+||++++
T Consensus       131 ~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~  164 (252)
T PRK14256        131 RVALWDEVKDRLKSNAMELSGGQQQRLCIARTIA  164 (252)
T ss_pred             HcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHh
Confidence            8998531   223467999999999999999974

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.91  E-value=9.7e-25  Score=195.60  Aligned_cols=88  Identities=32%  Similarity=0.483  Sum_probs=81.8

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      +++++.+|||||||||+||.+|+++|++|||||||++||+.++.++.++++++    +.|||+||||++++..+||++++
T Consensus       132 ~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~v  211 (235)
T COG1122         132 LDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVV  211 (235)
T ss_pred             ccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEE
Confidence            58999999999999999999999999999999999999999999998888876    46999999999999999999999


Q ss_pred             EeCCeEeEecCCH
Q psy2684          78 LDMKKLFYYKGNF   90 (356)
Q Consensus        78 l~~g~~~~~~g~~   90 (356)
                      |++|+++. .|..
T Consensus       212 l~~G~i~~-~g~p  223 (235)
T COG1122         212 LDDGKILA-DGDP  223 (235)
T ss_pred             EECCEEee-cCCH
Confidence            99999975 4554

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.91  E-value=8.8e-25  Score=223.64  Aligned_cols=162  Identities=20%  Similarity=0.206  Sum_probs=116.9

Q ss_pred             CCcEEEecceeeeCC---CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeee
Q psy2684         177 PPVLGLHDVTFGYPG---GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVA  253 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~---~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ia  253 (356)
                      +++++++|+++.|+.   +.++++++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++.        
T Consensus        10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~--------   81 (623)
T PRK10261         10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLR--------   81 (623)
T ss_pred             CceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEec--------
Confidence            458999999999942   246999999999999999999999999999999999999999999999887542        


Q ss_pred             eecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh----cCCCH----HHHHHHHh
Q psy2684         254 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLPY----EKSRRQLG  325 (356)
Q Consensus       254 lvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~----~~~~~----~~~~~~L~  325 (356)
                           +.|+..+     ..............+.+|||++|++...+++.+|+.+++...    .+.+.    +++.++|+
T Consensus        82 -----~~~~~~~-----~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~  151 (623)
T PRK10261         82 -----RRSRQVI-----ELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLD  151 (623)
T ss_pred             -----ccccccc-----ccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence                 0111000     000000000000112369999999744577889999987542    12322    34667899


Q ss_pred             hcCCCCc--cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         326 MFGLPSY--AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       326 ~~~l~~~--~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .+|+...  ..++++.+|||||||||+||++++
T Consensus       152 ~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~  184 (623)
T PRK10261        152 QVRIPEAQTILSRYPHQLSGGMRQRVMIAMALS  184 (623)
T ss_pred             HCCCCChhhHHhCCCccCCHHHHHHHHHHHHHh
Confidence            9999641  234577999999999999999974

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.91  E-value=1.3e-24  Score=196.91  Aligned_cols=139  Identities=29%  Similarity=0.389  Sum_probs=111.8

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG  259 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG  259 (356)
                      ++++|+++.| +++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...            
T Consensus         1 i~i~~l~~~~-~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~------------   67 (237)
T TIGR00968         1 IEIANISKRF-GSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRV------------   67 (237)
T ss_pred             CEEEEEEEEE-CCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcC------------
Confidence            4689999999 456799999999999999999999999999999999999999999999998765210            


Q ss_pred             CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCC----HHHHHHHHhhcCCCCc
Q psy2684         260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLP----YEKSRRQLGMFGLPSY  332 (356)
Q Consensus       260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~----~~~~~~~L~~~~l~~~  332 (356)
                                         .   ..+..++|++|++  .+++..|+.+++....   +..    ...+.++++.+++...
T Consensus        68 -------------------~---~~~~~i~~~~q~~--~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~  123 (237)
T TIGR00968        68 -------------------H---ARDRKIGFVFQHY--ALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGL  123 (237)
T ss_pred             -------------------C---hhhcCEEEEecCh--hhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhH
Confidence                               0   0134699999986  4777889998875321   221    2346778999999765


Q ss_pred             cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         333 AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       333 ~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .. +++..|||||+||++||++++
T Consensus       124 ~~-~~~~~lS~G~~qrl~laral~  146 (237)
T TIGR00968       124 GD-RYPNQLSGGQRQRVALARALA  146 (237)
T ss_pred             hh-CChhhCCHHHHHHHHHHHHHh
Confidence            54 467999999999999999974

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.91  E-value=1.4e-24  Score=195.41  Aligned_cols=140  Identities=22%  Similarity=0.290  Sum_probs=110.9

Q ss_pred             cEEEecceeeeCCC---ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc---cCCCceeEeeeccccCcCCee
Q psy2684         179 VLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT---PNKGKVLLEKVNFGLDMESRV  252 (356)
Q Consensus       179 ~l~~~~l~~~~~~~---~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~---p~~G~i~~~g~~~~~~~~~~i  252 (356)
                      ++.++|+++.|++.   +.+++++||+|.+||+++|+||||||||||+++|+|+++   |++|+|.++|.++..      
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~------   76 (226)
T cd03234           3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP------   76 (226)
T ss_pred             cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECCh------
Confidence            46789999999654   579999999999999999999999999999999999999   999999998865420      


Q ss_pred             eeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cC---CCH----HHHHH
Q psy2684         253 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FN---LPY----EKSRR  322 (356)
Q Consensus       253 alvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~---~~~----~~~~~  322 (356)
                                                   ...+..++|++|++  .+++..|+.+++...   ..   ...    ..+..
T Consensus        77 -----------------------------~~~~~~i~~~~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~  125 (226)
T cd03234          77 -----------------------------DQFQKCVAYVRQDD--ILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVED  125 (226)
T ss_pred             -----------------------------HHhcccEEEeCCCC--ccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHH
Confidence                                         01235699999986  467788999987532   11   111    12334


Q ss_pred             -HHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         323 -QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       323 -~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                       .++.+++...... ++..|||||+|||+||++++
T Consensus       126 ~~l~~~~l~~~~~~-~~~~LS~G~~qrl~laral~  159 (226)
T cd03234         126 VLLRDLALTRIGGN-LVKGISGGERRRVSIAVQLL  159 (226)
T ss_pred             HHHHhhcchhhhcc-cccCcCHHHHHHHHHHHHHH
Confidence             7888898765544 67999999999999999974

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=1.5e-24  Score=198.22  Aligned_cols=146  Identities=25%  Similarity=0.270  Sum_probs=110.7

Q ss_pred             CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc-----CCCceeEeeeccccCcCCe
Q psy2684         177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGKVLLEKVNFGLDMESR  251 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p-----~~G~i~~~g~~~~~~~~~~  251 (356)
                      +++++++|+++.| +++.+++++||+|.+||+++|+|+||||||||+++|+|+++|     ++|+|.++|.++....   
T Consensus         2 ~~~l~~~~l~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~---   77 (251)
T PRK14270          2 KIKMESKNLNLWY-GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKD---   77 (251)
T ss_pred             ccEEEEEEeEEEE-CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccccc---
Confidence            4679999999999 456799999999999999999999999999999999999875     7999999987652100   


Q ss_pred             eeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC-C----HHHHHHH
Q psy2684         252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-P----YEKSRRQ  323 (356)
Q Consensus       252 ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~-~----~~~~~~~  323 (356)
                                             +   . ....+..++|++|++.  +++ .|+.+++...   .+. .    ...+.++
T Consensus        78 -----------------------~---~-~~~~~~~i~~~~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~  127 (251)
T PRK14270         78 -----------------------V---D-VVELRKRVGMVFQKPN--PFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWA  127 (251)
T ss_pred             -----------------------c---c-HHHHHhheEEEecCCC--cCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHH
Confidence                                   0   0 0011346999999973  555 7998887532   222 1    1335678


Q ss_pred             HhhcCCCC---ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         324 LGMFGLPS---YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       324 L~~~~l~~---~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ++.+++..   ....+++.+|||||||||+||++++
T Consensus       128 l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~  163 (251)
T PRK14270        128 LKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIA  163 (251)
T ss_pred             HHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence            88888742   1223467999999999999999874

>KOG0057|consensus

Probab=99.91  E-value=8.4e-25  Score=209.98  Aligned_cols=142  Identities=32%  Similarity=0.365  Sum_probs=113.4

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      .++++||++.|++++++|+++||+|++||.+||+|+|||||||++|+|.+++. ++|+|+++|+++..-           
T Consensus       351 ~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~-----------  418 (591)
T KOG0057|consen  351 SIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEV-----------  418 (591)
T ss_pred             cEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhh-----------
Confidence            48999999999666669999999999999999999999999999999999999 999999999987411           


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHhhcCCCCccccC-
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAHTI-  336 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-~~~~~~~~~~~L~~~~l~~~~~~~-  336 (356)
                                       .    ....|.-|||+||+.  .+| +.|+..++... ...+.+++.+..+++|+.+...+. 
T Consensus       419 -----------------~----~~SlR~~Ig~VPQd~--~LF-ndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~  474 (591)
T KOG0057|consen  419 -----------------S----LESLRQSIGVVPQDS--VLF-NDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLP  474 (591)
T ss_pred             -----------------C----hHHhhhheeEeCCcc--ccc-chhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhcc
Confidence                             0    011245699999996  355 55788887654 345677888888888875432211 


Q ss_pred             ---------CCCCCChHHHHHHHHHHHcC
Q psy2684         337 ---------PIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       337 ---------~~~~LSGGqkqRvalA~~~l  356 (356)
                               .-..|||||||||+|||++|
T Consensus       475 ~GY~T~VGerG~~LSGGekQrvslaRa~l  503 (591)
T KOG0057|consen  475 DGYQTLVGERGLMLSGGEKQRVSLARAFL  503 (591)
T ss_pred             ccchhhHhhcccccccchHHHHHHHHHHh
Confidence                     22479999999999999975

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.91  E-value=6.4e-25  Score=197.91  Aligned_cols=141  Identities=30%  Similarity=0.396  Sum_probs=104.3

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG  259 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG  259 (356)
                      ++++|+++.|++...+++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...            
T Consensus         3 l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~------------   70 (229)
T cd03254           3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDI------------   70 (229)
T ss_pred             EEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHc------------
Confidence            68999999995345699999999999999999999999999999999999999999999998654210            


Q ss_pred             CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC-CCHHHHHHHHhhcC----------
Q psy2684         260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN-LPYEKSRRQLGMFG----------  328 (356)
Q Consensus       260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~-~~~~~~~~~L~~~~----------  328 (356)
                                     +     ....+..++|++|++  .+++. |+.+++..... .....+.+.++.++          
T Consensus        71 ---------------~-----~~~~~~~i~~~~q~~--~~~~~-tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  127 (229)
T cd03254          71 ---------------S-----RKSLRSMIGVVLQDT--FLFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPN  127 (229)
T ss_pred             ---------------C-----HHHHhhhEEEecCCc--hhhhh-HHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcc
Confidence                           0     000134689999986  35554 88888754321 22333444444443          


Q ss_pred             -CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         329 -LPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       329 -l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                       +..... +++.+|||||||||+||++++
T Consensus       128 ~~~~~~~-~~~~~LS~G~~~rv~la~al~  155 (229)
T cd03254         128 GYDTVLG-ENGGNLSQGERQLLAIARAML  155 (229)
T ss_pred             cccCHhh-cCCCcCCHHHHHHHHHHHHHh
Confidence             333333 356899999999999999974

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.91  E-value=8.8e-25  Score=220.13  Aligned_cols=152  Identities=21%  Similarity=0.239  Sum_probs=113.9

Q ss_pred             CCcEEEecceeeeCC---CccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc-----CCCceeEeeeccccCc
Q psy2684         177 PPVLGLHDVTFGYPG---GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGKVLLEKVNFGLDM  248 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~---~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p-----~~G~i~~~g~~~~~~~  248 (356)
                      +++++++|+++.|++   ++.+|+++||+|.+||+++|+||||||||||+++|+|+++|     ++|+|.++|.++....
T Consensus         3 ~~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~   82 (529)
T PRK15134          3 QPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS   82 (529)
T ss_pred             CceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCC
Confidence            357999999999953   24799999999999999999999999999999999999987     7999999987653100


Q ss_pred             CCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh----cCCC----HHHH
Q psy2684         249 ESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLP----YEKS  320 (356)
Q Consensus       249 ~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~----~~~~----~~~~  320 (356)
                                                  ........+.++||++|++...+++..++.+++...    .+.+    ..++
T Consensus        83 ----------------------------~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (529)
T PRK15134         83 ----------------------------EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEI  134 (529)
T ss_pred             ----------------------------HHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHH
Confidence                                        000000112469999999743466667887766421    1222    2346


Q ss_pred             HHHHhhcCCCCc--cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         321 RRQLGMFGLPSY--AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       321 ~~~L~~~~l~~~--~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .++++.+|+.+.  ..++++.+|||||||||+||++++
T Consensus       135 ~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~  172 (529)
T PRK15134        135 LNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALL  172 (529)
T ss_pred             HHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHh
Confidence            778999999753  123477999999999999999974

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.91  E-value=1.1e-24  Score=196.09  Aligned_cols=145  Identities=30%  Similarity=0.436  Sum_probs=109.8

Q ss_pred             CCCcEEEecceeeeCCC--ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeee
Q psy2684         176 PPPVLGLHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVA  253 (356)
Q Consensus       176 ~~~~l~~~~l~~~~~~~--~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ia  253 (356)
                      ..++++++|+++.|++.  ..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...      
T Consensus         8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~------   81 (226)
T cd03248           8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQY------   81 (226)
T ss_pred             cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHc------
Confidence            35689999999999532  3699999999999999999999999999999999999999999999998654210      


Q ss_pred             eecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC-CCHH---------HHHHH
Q psy2684         254 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN-LPYE---------KSRRQ  323 (356)
Q Consensus       254 lvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~-~~~~---------~~~~~  323 (356)
                                               . ....+..++|++|++.  +++ .|+.+++..... ....         .+.++
T Consensus        82 -------------------------~-~~~~~~~i~~~~q~~~--l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~  132 (226)
T cd03248          82 -------------------------E-HKYLHSKVSLVGQEPV--LFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSF  132 (226)
T ss_pred             -------------------------C-HHHHHhhEEEEecccH--HHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHH
Confidence                                     0 0011346999999863  454 588888753211 1111         13456


Q ss_pred             Hhhc--CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         324 LGMF--GLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       324 L~~~--~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ++.+  |+...... ++.+|||||||||+||++++
T Consensus       133 l~~l~~gl~~~~~~-~~~~LSgG~~qrv~laral~  166 (226)
T cd03248         133 ISELASGYDTEVGE-KGSQLSGGQKQRVAIARALI  166 (226)
T ss_pred             HHhccccccchhhc-CCCcCCHHHHHHHHHHHHHh
Confidence            7777  77765544 57999999999999999974

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.91  E-value=1.3e-24  Score=193.87  Aligned_cols=138  Identities=28%  Similarity=0.321  Sum_probs=105.5

Q ss_pred             cceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCchh
Q psy2684         184 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKS  263 (356)
Q Consensus       184 ~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKs  263 (356)
                      +|+++| ++..+  |+||+|.+ ++++|+||||||||||+++|+|+++|++|+|.++|.++....               
T Consensus         5 ~l~~~~-~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~---------------   65 (214)
T cd03297           5 DIEKRL-PDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSR---------------   65 (214)
T ss_pred             eeeEec-CCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccc---------------
Confidence            899999 44444  99999999 999999999999999999999999999999999987642100               


Q ss_pred             hHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC-C----CHHHHHHHHhhcCCCCccccCCC
Q psy2684         264 TFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN-L----PYEKSRRQLGMFGLPSYAHTIPI  338 (356)
Q Consensus       264 Tll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~-~----~~~~~~~~L~~~~l~~~~~~~~~  338 (356)
                                 .. ... ...+..++|++|++  .+++..|+.+++..... .    ....+.++++.+|+..... +++
T Consensus        66 -----------~~-~~~-~~~~~~i~~~~q~~--~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~  129 (214)
T cd03297          66 -----------KK-INL-PPQQRKIGLVFQQY--ALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLN-RYP  129 (214)
T ss_pred             -----------ch-hhh-hhHhhcEEEEecCC--ccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhh-cCc
Confidence                       00 000 01134699999986  46778899988753221 1    1234678899999986554 477


Q ss_pred             CCCChHHHHHHHHHHHcC
Q psy2684         339 RDLSGGQKARVALAELTL  356 (356)
Q Consensus       339 ~~LSGGqkqRvalA~~~l  356 (356)
                      .+||||||||++||++++
T Consensus       130 ~~LS~G~~qrv~la~al~  147 (214)
T cd03297         130 AQLSGGEKQRVALARALA  147 (214)
T ss_pred             ccCCHHHHHHHHHHHHHh
Confidence            999999999999999974

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.91  E-value=1.9e-24  Score=191.20  Aligned_cols=126  Identities=21%  Similarity=0.239  Sum_probs=100.5

Q ss_pred             cEEEecceeeeCC---CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc---cCCCceeEeeeccccCcCCee
Q psy2684         179 VLGLHDVTFGYPG---GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT---PNKGKVLLEKVNFGLDMESRV  252 (356)
Q Consensus       179 ~l~~~~l~~~~~~---~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~---p~~G~i~~~g~~~~~~~~~~i  252 (356)
                      .+.++|++|.|+.   ++.+|+++||+|.+|++++|+||||||||||+++|+|+++   |++|+|.++|.++..      
T Consensus         3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~------   76 (202)
T cd03233           3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKE------   76 (202)
T ss_pred             eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECcc------
Confidence            5789999999963   4579999999999999999999999999999999999999   899999999876421      


Q ss_pred             eeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCc
Q psy2684         253 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSY  332 (356)
Q Consensus       253 alvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~  332 (356)
                                                 .....+..++|++|++  .+++..|+.+++.....         +   .    
T Consensus        77 ---------------------------~~~~~~~~i~~~~q~~--~~~~~~tv~~~l~~~~~---------~---~----  111 (202)
T cd03233          77 ---------------------------FAEKYPGEIIYVSEED--VHFPTLTVRETLDFALR---------C---K----  111 (202)
T ss_pred             ---------------------------chhhhcceEEEEeccc--ccCCCCcHHHHHhhhhh---------h---c----
Confidence                                       0001234699999985  46778899998743211         0   0    


Q ss_pred             cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         333 AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       333 ~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      . ++++..|||||+||++||++++
T Consensus       112 ~-~~~~~~LS~Ge~qrl~laral~  134 (202)
T cd03233         112 G-NEFVRGISGGERKRVSIAEALV  134 (202)
T ss_pred             c-ccchhhCCHHHHHHHHHHHHHh
Confidence            2 2467899999999999999974

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.91  E-value=8.3e-25  Score=226.82  Aligned_cols=143  Identities=29%  Similarity=0.416  Sum_probs=113.7

Q ss_pred             cEEEecceeeeCC-CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         179 VLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       179 ~l~~~~l~~~~~~-~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      -++++||+|+|++ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|+++..-          
T Consensus       451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~----------  520 (686)
T TIGR03797       451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGL----------  520 (686)
T ss_pred             eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcC----------
Confidence            4899999999953 45799999999999999999999999999999999999999999999999887411          


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCccccC-
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTI-  336 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~~~-  336 (356)
                                      .      ....+..+||++|++.  +| +.|+.||+......+.++++++++..++.+..... 
T Consensus       521 ----------------~------~~~lr~~i~~v~Q~~~--lf-~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp  575 (686)
T TIGR03797       521 ----------------D------VQAVRRQLGVVLQNGR--LM-SGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMP  575 (686)
T ss_pred             ----------------C------HHHHHhccEEEccCCc--cC-cccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhcc
Confidence                            0      0012457999999973  55 45899998654336677788888887775432211 


Q ss_pred             ---------CCCCCChHHHHHHHHHHHcC
Q psy2684         337 ---------PIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       337 ---------~~~~LSGGqkqRvalA~~~l  356 (356)
                               .-..||||||||++|||+++
T Consensus       576 ~G~dt~ige~G~~LSGGQrQRialARAll  604 (686)
T TIGR03797       576 MGMHTVISEGGGTLSGGQRQRLLIARALV  604 (686)
T ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHh
Confidence                     12579999999999999975

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.91  E-value=8.2e-25  Score=223.34  Aligned_cols=143  Identities=25%  Similarity=0.322  Sum_probs=113.7

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      -++++|+++.|++++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++..-.          
T Consensus       340 ~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~----------  409 (592)
T PRK10790        340 RIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLS----------  409 (592)
T ss_pred             eEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCC----------
Confidence            4899999999965567999999999999999999999999999999999999999999999998764100          


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCcccc---
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHT---  335 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~~---  335 (356)
                                            ....+.+|+|++|++.  +|+. |+.+|+......+.+++.++++.+|+.+....   
T Consensus       410 ----------------------~~~l~~~i~~v~Q~~~--lF~~-Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~  464 (592)
T PRK10790        410 ----------------------HSVLRQGVAMVQQDPV--VLAD-TFLANVTLGRDISEEQVWQALETVQLAELARSLPD  464 (592)
T ss_pred             ----------------------HHHHHhheEEEccCCc--cccc-hHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccc
Confidence                                  0112457999999983  6654 89999866545567778888887775432111   


Q ss_pred             -------CCCCCCChHHHHHHHHHHHcC
Q psy2684         336 -------IPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       336 -------~~~~~LSGGqkqRvalA~~~l  356 (356)
                             ..-..||||||||++|||+++
T Consensus       465 Gldt~i~e~g~~LSGGqrQRialARaLl  492 (592)
T PRK10790        465 GLYTPLGEQGNNLSVGQKQLLALARVLV  492 (592)
T ss_pred             cccccccCCCCCCCHHHHHHHHHHHHHH
Confidence                   122579999999999999975

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.91  E-value=2.6e-24  Score=196.76  Aligned_cols=146  Identities=25%  Similarity=0.309  Sum_probs=109.0

Q ss_pred             CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccc--cc---CCCceeEeeeccccCcCCe
Q psy2684         177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL--TP---NKGKVLLEKVNFGLDMESR  251 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~--~p---~~G~i~~~g~~~~~~~~~~  251 (356)
                      .++++++|+++.| +++.+++++||+|.+||+++|+||||||||||+++|+|+.  .|   ++|+|.++|.++...    
T Consensus         3 ~~~l~~~~l~~~~-~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~----   77 (252)
T PRK14239          3 EPILQVSDLSVYY-NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSP----   77 (252)
T ss_pred             CceEEEEeeEEEE-CCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCc----
Confidence            3578999999999 4567999999999999999999999999999999999995  46   599999998765210    


Q ss_pred             eeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC-----HHHHHHH
Q psy2684         252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP-----YEKSRRQ  323 (356)
Q Consensus       252 ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~-----~~~~~~~  323 (356)
                                               ... ....+..++|++|++.  +++ .|+.+++...   .+..     ...+.++
T Consensus        78 -------------------------~~~-~~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~  128 (252)
T PRK14239         78 -------------------------RTD-TVDLRKEIGMVFQQPN--PFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKS  128 (252)
T ss_pred             -------------------------ccc-hHhhhhcEEEEecCCc--cCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence                                     000 0011346999999873  555 7898887532   2221     1335567


Q ss_pred             HhhcCCCCc---cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         324 LGMFGLPSY---AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       324 L~~~~l~~~---~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ++.+++...   ...+++.+|||||||||+||++++
T Consensus       129 l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~  164 (252)
T PRK14239        129 LKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLA  164 (252)
T ss_pred             HHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHh
Confidence            888887431   223467999999999999999874

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=2.1e-24  Score=198.12  Aligned_cols=147  Identities=23%  Similarity=0.290  Sum_probs=110.2

Q ss_pred             CCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc--c---CCCceeEeeeccccCcCC
Q psy2684         176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT--P---NKGKVLLEKVNFGLDMES  250 (356)
Q Consensus       176 ~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~--p---~~G~i~~~g~~~~~~~~~  250 (356)
                      .+++++++|+++.| +++.+++++||+|.+||+++|+||||||||||+++|+|+++  |   ++|+|.++|.++....  
T Consensus         9 ~~~~l~i~~l~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~--   85 (259)
T PRK14274          9 KQEVYQINGMNLWY-GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK--   85 (259)
T ss_pred             CCceEEEeeEEEEE-CCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccc--
Confidence            45689999999999 45679999999999999999999999999999999999997  3   5899999987652100  


Q ss_pred             eeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC-CH----HHHHH
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-PY----EKSRR  322 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~-~~----~~~~~  322 (356)
                                                 .. ....+..+||++|++.  +++. |+.+++...   .+. ..    ..+.+
T Consensus        86 ---------------------------~~-~~~~~~~i~~v~q~~~--~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~  134 (259)
T PRK14274         86 ---------------------------VD-LVELRKNIGMVFQKGN--PFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEK  134 (259)
T ss_pred             ---------------------------cC-HHHHhhceEEEecCCc--cccc-CHHHHHHhHHHhcCCCCHHHHHHHHHH
Confidence                                       00 0011346999999863  5554 888887432   121 21    23556


Q ss_pred             HHhhcCCCCc---cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         323 QLGMFGLPSY---AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       323 ~L~~~~l~~~---~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +++.+++...   ...+++.+||||||||++||++++
T Consensus       135 ~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~  171 (259)
T PRK14274        135 SLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALA  171 (259)
T ss_pred             HHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHh
Confidence            7888888531   223477999999999999999874

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.91  E-value=7.6e-25  Score=223.45  Aligned_cols=141  Identities=28%  Similarity=0.325  Sum_probs=110.1

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      -++++||++.|++++++|+|+||+|++|++++|+||||||||||+++|+|++ |++|+|.++|+++..-.          
T Consensus       349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~----------  417 (588)
T PRK11174        349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELD----------  417 (588)
T ss_pred             eEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCC----------
Confidence            4899999986655677999999999999999999999999999999999999 99999999998764100          


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHhhcCCCC------
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPS------  331 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-~~~~~~~~~~~L~~~~l~~------  331 (356)
                                            ....+.+|+|++|++.  +| +.|+.||+... .+.+++++++.++..++.+      
T Consensus       418 ----------------------~~~lr~~i~~v~Q~~~--LF-~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp  472 (588)
T PRK11174        418 ----------------------PESWRKHLSWVGQNPQ--LP-HGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLP  472 (588)
T ss_pred             ----------------------HHHHHhheEEecCCCc--CC-CcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcc
Confidence                                  0112457999999973  55 45999998654 3466777777766655432      


Q ss_pred             -----ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         332 -----YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       332 -----~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                           .... .-..||||||||++|||+++
T Consensus       473 ~G~dT~vge-~G~~LSGGQrQRialARAll  501 (588)
T PRK11174        473 QGLDTPIGD-QAAGLSVGQAQRLALARALL  501 (588)
T ss_pred             ccccccccc-CCCCCCHHHHHHHHHHHHHh
Confidence                 2222 23579999999999999975

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.91  E-value=3.5e-24  Score=195.89  Aligned_cols=145  Identities=22%  Similarity=0.378  Sum_probs=109.4

Q ss_pred             CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccc--cccCCCceeEeeeccccCcCCeeee
Q psy2684         177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE--LTPNKGKVLLEKVNFGLDMESRVAL  254 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl--~~p~~G~i~~~g~~~~~~~~~~ial  254 (356)
                      +++++++|+++.| ++..+|+++||+|.+||+++|+|+||||||||+++|+|+  ++|++|+|.++|.++...       
T Consensus         5 ~~~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~-------   76 (252)
T CHL00131          5 KPILEIKNLHASV-NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDL-------   76 (252)
T ss_pred             CceEEEEeEEEEe-CCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccC-------
Confidence            3579999999999 456799999999999999999999999999999999998  689999999998765310       


Q ss_pred             ecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-------C---CC----HHHH
Q psy2684         255 VGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-------N---LP----YEKS  320 (356)
Q Consensus       255 vG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-------~---~~----~~~~  320 (356)
                                         .+     ....+..++|++|++  .+++..++.+++....       .   ..    ...+
T Consensus        77 -------------------~~-----~~~~~~~~~~~~q~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  130 (252)
T CHL00131         77 -------------------EP-----EERAHLGIFLAFQYP--IEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEII  130 (252)
T ss_pred             -------------------Ch-----hhhheeeEEEEeccc--cccccccHHHHHHHhhhhhhcccccccccHHHHHHHH
Confidence                               00     000112478999986  3677778877754221       0   01    1335


Q ss_pred             HHHHhhcCCCC-ccccCCCC-CCChHHHHHHHHHHHcC
Q psy2684         321 RRQLGMFGLPS-YAHTIPIR-DLSGGQKARVALAELTL  356 (356)
Q Consensus       321 ~~~L~~~~l~~-~~~~~~~~-~LSGGqkqRvalA~~~l  356 (356)
                      .++|+.+++.+ .... ++. .|||||+|||+||++++
T Consensus       131 ~~~l~~~~l~~~~~~~-~~~~~LSgG~~qrv~la~al~  167 (252)
T CHL00131        131 NEKLKLVGMDPSFLSR-NVNEGFSGGEKKRNEILQMAL  167 (252)
T ss_pred             HHHHHHcCCchhhhcc-ccccCCCHHHHHHHHHHHHHH
Confidence            67899999974 3443 555 59999999999999974

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=1.8e-24  Score=201.30  Aligned_cols=146  Identities=23%  Similarity=0.271  Sum_probs=110.3

Q ss_pred             CCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc-----cCCCceeEeeeccccCcCC
Q psy2684         176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGKVLLEKVNFGLDMES  250 (356)
Q Consensus       176 ~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~-----p~~G~i~~~g~~~~~~~~~  250 (356)
                      ++++++++|+++.| ++..+|+|+||+|.+|++++|+||||||||||+++|+|+.+     |++|+|.++|.++....  
T Consensus        36 ~~~~l~~~~l~~~~-~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~--  112 (286)
T PRK14275         36 GKPHVVAKNFSIYY-GEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKF--  112 (286)
T ss_pred             CceEEEEeeeEEEE-CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcc--
Confidence            56789999999999 45679999999999999999999999999999999999864     49999999987642000  


Q ss_pred             eeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC-C----HHHHHH
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-P----YEKSRR  322 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~-~----~~~~~~  322 (356)
                                                 .. ....+.+++|++|++.  +++. |+.+++...   .+. .    .+.+.+
T Consensus       113 ---------------------------~~-~~~~~~~i~~v~q~~~--l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~  161 (286)
T PRK14275        113 ---------------------------TD-EVLLRKKIGMVFQKPN--PFPK-SIFDNIAYGPRLHGINDKKQLEEIVEK  161 (286)
T ss_pred             ---------------------------cc-hHHhhhcEEEECCCCC--CCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHH
Confidence                                       00 0012346999999973  5554 999987532   122 1    123556


Q ss_pred             HHhhcCCC----CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         323 QLGMFGLP----SYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       323 ~L~~~~l~----~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +++.+++.    +.. .+++.+|||||||||+||++++
T Consensus       162 ~l~~~~l~~~l~~~~-~~~~~~LSgGq~qrv~LAraL~  198 (286)
T PRK14275        162 SLRKAALWDEVSDRL-DKNALGLSGGQQQRLCVARTLA  198 (286)
T ss_pred             HHHHhCCccchhhHh-hCChhhCCHHHHHHHHHHHHHh
Confidence            78888874    223 3467999999999999999974

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=2.8e-24  Score=216.57  Aligned_cols=132  Identities=30%  Similarity=0.484  Sum_probs=107.0

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      +++++|+++.| +++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++                 
T Consensus         1 ml~i~~ls~~~-~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~-----------------   62 (530)
T PRK15064          1 MLSTANITMQF-GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDP-----------------   62 (530)
T ss_pred             CEEEEEEEEEe-CCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------------
Confidence            47899999999 566899999999999999999999999999999999999999999998863                 


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc--------------CC---------
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF--------------NL---------  315 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~--------------~~---------  315 (356)
                                                ..++||++|++  .+++..|+.+++....              ..         
T Consensus        63 --------------------------~~~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (530)
T PRK15064         63 --------------------------NERLGKLRQDQ--FAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGM  114 (530)
T ss_pred             --------------------------CCEEEEEeccC--CcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHH
Confidence                                      12589999986  3667788877754210              00         


Q ss_pred             ----------------CHHHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         316 ----------------PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       316 ----------------~~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                                      ....+.++|+.+|+......+++.+|||||||||+||++++
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~  171 (530)
T PRK15064        115 KVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALF  171 (530)
T ss_pred             HHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHh
Confidence                            02345678999999764444578999999999999999974

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.91  E-value=2.5e-24  Score=191.08  Aligned_cols=136  Identities=22%  Similarity=0.281  Sum_probs=103.9

Q ss_pred             CcEEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684         178 PVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG  256 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG  256 (356)
                      ..++++|+++.|++. ..+++++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.++...         
T Consensus         5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~---------   75 (207)
T cd03369           5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTI---------   75 (207)
T ss_pred             CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHC---------
Confidence            458999999999532 4799999999999999999999999999999999999999999999998764200         


Q ss_pred             CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCccccC
Q psy2684         257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTI  336 (356)
Q Consensus       257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~~~  336 (356)
                                            . ....+..++|++|++  .+++ .|+.+++.........++.+.++   +    . .
T Consensus        76 ----------------------~-~~~~~~~i~~v~q~~--~~~~-~tv~~~l~~~~~~~~~~~~~~l~---~----~-~  121 (207)
T cd03369          76 ----------------------P-LEDLRSSLTIIPQDP--TLFS-GTIRSNLDPFDEYSDEEIYGALR---V----S-E  121 (207)
T ss_pred             ----------------------C-HHHHHhhEEEEecCC--cccC-ccHHHHhcccCCCCHHHHHHHhh---c----c-C
Confidence                                  0 000134699999997  3555 48888874332233344444444   2    2 3


Q ss_pred             CCCCCChHHHHHHHHHHHcC
Q psy2684         337 PIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       337 ~~~~LSGGqkqRvalA~~~l  356 (356)
                      ++..|||||+|||+||++++
T Consensus       122 ~~~~LS~G~~qrv~laral~  141 (207)
T cd03369         122 GGLNLSQGQRQLLCLARALL  141 (207)
T ss_pred             CCCcCCHHHHHHHHHHHHHh
Confidence            56899999999999999974

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=4.4e-24  Score=197.70  Aligned_cols=145  Identities=27%  Similarity=0.382  Sum_probs=110.8

Q ss_pred             CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc-----CCCceeEeeeccccCcCCe
Q psy2684         177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGKVLLEKVNFGLDMESR  251 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p-----~~G~i~~~g~~~~~~~~~~  251 (356)
                      .++++++|+++.| +++.+|+++||+|++||+++|+|+||||||||+++|+|+++|     ++|+|.++|.++...    
T Consensus        19 ~~~l~i~nl~~~~-~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~----   93 (276)
T PRK14271         19 APAMAAVNLTLGF-AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNY----   93 (276)
T ss_pred             CcEEEEeeEEEEE-CCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEcccc----
Confidence            5689999999999 567899999999999999999999999999999999999986     699999998765200    


Q ss_pred             eeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---C-CCHH----HHHHH
Q psy2684         252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---N-LPYE----KSRRQ  323 (356)
Q Consensus       252 ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~-~~~~----~~~~~  323 (356)
                                                .. ....+..++|++|++.  +++ .|+.+++....   . .+..    .+.+.
T Consensus        94 --------------------------~~-~~~~~~~i~~v~q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~  143 (276)
T PRK14271         94 --------------------------RD-VLEFRRRVGMLFQRPN--PFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQAR  143 (276)
T ss_pred             --------------------------ch-hHHHhhheEEeccCCc--cCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence                                      00 0011346999999873  565 78988875321   1 2222    23567


Q ss_pred             HhhcCCCCc---cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         324 LGMFGLPSY---AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       324 L~~~~l~~~---~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ++.+++...   ...+++.+|||||+|||+||++++
T Consensus       144 l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~  179 (276)
T PRK14271        144 LTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLA  179 (276)
T ss_pred             HHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence            888888642   123467899999999999999974

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=2e-24  Score=209.95  Aligned_cols=143  Identities=33%  Similarity=0.452  Sum_probs=114.4

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      .++++|+++.|++++++++|+||++++|+.++|+|+||||||||+++|+|+.+|++|+|.+||++...-           
T Consensus       320 ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l-----------  388 (559)
T COG4988         320 EISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDL-----------  388 (559)
T ss_pred             eeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCcccccc-----------
Confidence            356679999998777999999999999999999999999999999999999999999999999875311           


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHhhcCCCCcccc--
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAHT--  335 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-~~~~~~~~~~~L~~~~l~~~~~~--  335 (356)
                                       +    ....+.+++|++|+|.  ++ .-|+.||+... .+.+++++.++++..|+.+....  
T Consensus       389 -----------------~----~~~~~k~i~~v~Q~p~--lf-~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~  444 (559)
T COG4988         389 -----------------S----PEAWRKQISWVSQNPY--LF-AGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPD  444 (559)
T ss_pred             -----------------C----HHHHHhHeeeeCCCCc--cc-cccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCC
Confidence                             0    0112467999999983  44 55889988654 34677888888888877544332  


Q ss_pred             ---CCCC----CCChHHHHHHHHHHHcC
Q psy2684         336 ---IPIR----DLSGGQKARVALAELTL  356 (356)
Q Consensus       336 ---~~~~----~LSGGqkqRvalA~~~l  356 (356)
                         ..+.    .|||||+|||+|||+++
T Consensus       445 GLdt~ige~G~~LSgGQ~QRlaLARAll  472 (559)
T COG4988         445 GLDTVIGEGGAGLSGGQAQRLALARALL  472 (559)
T ss_pred             cccchhccCCCCCCHHHHHHHHHHHHhc
Confidence               2233    49999999999999985

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.91  E-value=1.6e-24  Score=189.09  Aligned_cols=137  Identities=23%  Similarity=0.418  Sum_probs=117.1

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      .+++++|+++| +.+.+++|+||++++|++++++|||||||||++++|.|++.|++|+|.|+|.++.             
T Consensus         2 ~L~ie~vtK~F-g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~-------------   67 (300)
T COG4152           2 ALEIEGVTKSF-GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLS-------------   67 (300)
T ss_pred             ceEEecchhcc-CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchh-------------
Confidence            47999999999 7888999999999999999999999999999999999999999999999986653             


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHH---HhcCCCHHH----HHHHHhhcCCCC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM---KLFNLPYEK----SRRQLGMFGLPS  331 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~---~~~~~~~~~----~~~~L~~~~l~~  331 (356)
                                             .....+|||+|.+.  .+++.+|+.|.+.   ...+.+..+    +..||+++++..
T Consensus        68 -----------------------~~~~~rIGyLPEER--GLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~  122 (300)
T COG4152          68 -----------------------QEIKNRIGYLPEER--GLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVG  122 (300)
T ss_pred             -----------------------hhhhhhcccChhhh--ccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccc
Confidence                                   12245799999875  5999999998764   345666544    557899999998


Q ss_pred             ccccCCCCCCChHHHHHHHHHHHc
Q psy2684         332 YAHTIPIRDLSGGQKARVALAELT  355 (356)
Q Consensus       332 ~~~~~~~~~LSGGqkqRvalA~~~  355 (356)
                      ...+ ++.+||-|++|++.+..++
T Consensus       123 ~~~~-kIk~LSKGnqQKIQfisav  145 (300)
T COG4152         123 KKTK-KIKELSKGNQQKIQFISAV  145 (300)
T ss_pred             cccc-hHHHhhhhhhHHHHHHHHH
Confidence            7765 8999999999999987765

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.91  E-value=6.9e-25  Score=194.78  Aligned_cols=129  Identities=29%  Similarity=0.417  Sum_probs=103.9

Q ss_pred             ccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCC
Q psy2684         197 EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN  276 (356)
Q Consensus       197 ~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~  276 (356)
                      =+++|+++.-.++||.|+||||||||+|+|+|+.+|++|.|.+||.-+...             .               
T Consensus        15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds-------------~---------------   66 (352)
T COG4148          15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDA-------------E---------------   66 (352)
T ss_pred             EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecc-------------c---------------
Confidence            357888888789999999999999999999999999999999998655311             0               


Q ss_pred             cceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHc
Q psy2684         277 KGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT  355 (356)
Q Consensus       277 ~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~  355 (356)
                      .+-.....+++||||||+.  .+||.+|+..|+.... .....+..++.+.+|+.+...++| .+|||||||||||+|+|
T Consensus        67 k~i~lp~~~RriGYVFQDA--RLFpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P-~~LSGGEkQRVAIGRAL  143 (352)
T COG4148          67 KGIFLPPEKRRIGYVFQDA--RLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYP-GTLSGGEKQRVAIGRAL  143 (352)
T ss_pred             CCcccChhhheeeeEeecc--ccccceEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCC-CccCcchhhHHHHHHHH
Confidence            1111112356899999996  5999999999886432 334566788999999999988755 89999999999999998


Q ss_pred             C
Q psy2684         356 L  356 (356)
Q Consensus       356 l  356 (356)
                      |
T Consensus       144 L  144 (352)
T COG4148         144 L  144 (352)
T ss_pred             h
Confidence            5

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.91  E-value=1e-24  Score=182.59  Aligned_cols=146  Identities=26%  Similarity=0.312  Sum_probs=115.6

Q ss_pred             CcEEEecceeeeCC--------CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcC
Q psy2684         178 PVLGLHDVTFGYPG--------GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDME  249 (356)
Q Consensus       178 ~~l~~~~l~~~~~~--------~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~  249 (356)
                      ++++|+|+++.|..        ...+++.|||++++|+.++|+|.||||||||.++|+|+++|++|+|.+||..+..   
T Consensus         3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~---   79 (267)
T COG4167           3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHF---   79 (267)
T ss_pred             chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccc---
Confidence            46889999987742        1248899999999999999999999999999999999999999999999876531   


Q ss_pred             CeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh----cCCCH----HHHH
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLPY----EKSR  321 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~----~~~~~----~~~~  321 (356)
                                                  +.. ..+..+|-++||+|+..++|.+.+...+-..    ...+.    +++.
T Consensus        80 ----------------------------~Dy-~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~  130 (267)
T COG4167          80 ----------------------------GDY-SFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIF  130 (267)
T ss_pred             ----------------------------cch-HhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHH
Confidence                                        111 1123568899999998899988877665332    12222    3456


Q ss_pred             HHHhhcCCCCccccCCCCCCChHHHHHHHHHHHc
Q psy2684         322 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT  355 (356)
Q Consensus       322 ~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~  355 (356)
                      +-|..+|+-++-....+..||-||||||||||+|
T Consensus       131 ~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARAL  164 (267)
T COG4167         131 ETLRMVGLLPDHANYYPHMLAPGQKQRVALARAL  164 (267)
T ss_pred             HHHHHhccCccccccchhhcCchhHHHHHHHHHH
Confidence            7799999976655567799999999999999997

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.91  E-value=3.4e-24  Score=195.75  Aligned_cols=144  Identities=26%  Similarity=0.325  Sum_probs=107.8

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc-----CCCceeEeeeccccCcCCeee
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGKVLLEKVNFGLDMESRVA  253 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p-----~~G~i~~~g~~~~~~~~~~ia  253 (356)
                      .++++|+++.| +++.+++|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++...      
T Consensus         3 ~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~------   75 (250)
T PRK14240          3 KISVKDLDLFY-GDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKS------   75 (250)
T ss_pred             eEEEEEEEEEE-CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc------
Confidence            47899999999 456799999999999999999999999999999999999863     699999998765210      


Q ss_pred             eecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC-C----HHHHHHHHh
Q psy2684         254 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-P----YEKSRRQLG  325 (356)
Q Consensus       254 lvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~-~----~~~~~~~L~  325 (356)
                                             ... ....+..++|++|++.  +++ .|+.+++...   .+. .    .+.+.++++
T Consensus        76 -----------------------~~~-~~~~~~~i~~~~q~~~--~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~  128 (250)
T PRK14240         76 -----------------------DID-VNQLRKRVGMVFQQPN--PFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLK  128 (250)
T ss_pred             -----------------------ccc-hHHHhccEEEEecCCc--cCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence                                   000 0011346999999863  565 7888887532   221 1    234556788


Q ss_pred             hcCCCC---ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         326 MFGLPS---YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       326 ~~~l~~---~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .+++..   ....+++.+|||||||||+||++++
T Consensus       129 ~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~  162 (250)
T PRK14240        129 GAALWDEVKDRLKKSALGLSGGQQQRLCIARALA  162 (250)
T ss_pred             HcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHh
Confidence            888742   1223477999999999999999974

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.91  E-value=1.2e-25  Score=190.21  Aligned_cols=142  Identities=22%  Similarity=0.389  Sum_probs=111.2

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      |++++|+++.| +++.+++++|++|++|.+++|+|||||||||||.++++++++++|+|+++|.++.....+        
T Consensus         1 MI~i~nv~K~y-~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~--------   71 (252)
T COG4604           1 MITIENVSKSY-GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSK--------   71 (252)
T ss_pred             CeeehhhhHhh-CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChH--------
Confidence            57899999999 788999999999999999999999999999999999999999999999999987522110        


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-c----C-C---CHHHHHHHHhhcCC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-F----N-L---PYEKSRRQLGMFGL  329 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-~----~-~---~~~~~~~~L~~~~l  329 (356)
                           .|+                   .+++.+-|..  .+....|+.+.+... +    + .   +...+.++++.++|
T Consensus        72 -----~LA-------------------k~lSILkQ~N--~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L  125 (252)
T COG4604          72 -----ELA-------------------KKLSILKQEN--HINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHL  125 (252)
T ss_pred             -----HHH-------------------HHHHHHHhhc--hhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcc
Confidence                 121                   2344455654  355677888876431 1    1 1   22346788999999


Q ss_pred             CCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         330 PSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       330 ~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .+..++ ...+||||||||+-||.+++
T Consensus       126 ~~l~dr-yLd~LSGGQrQRAfIAMVla  151 (252)
T COG4604         126 EDLSDR-YLDELSGGQRQRAFIAMVLA  151 (252)
T ss_pred             cchHHH-hHHhcccchhhhhhhheeee
Confidence            887765 67999999999999998764

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=4.1e-24  Score=195.47  Aligned_cols=145  Identities=26%  Similarity=0.377  Sum_probs=108.3

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccC-----CCceeEeeeccccCcCCeee
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN-----KGKVLLEKVNFGLDMESRVA  253 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~-----~G~i~~~g~~~~~~~~~~ia  253 (356)
                      +++++|+++.| +++.+++++||+|.+|++++|+||||||||||+++|+|+++|+     +|+|.++|.++...      
T Consensus         4 ~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~------   76 (252)
T PRK14272          4 LLSAQDVNIYY-GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGP------   76 (252)
T ss_pred             EEEEeeeEEEE-CCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccC------
Confidence            68999999999 4667999999999999999999999999999999999999874     89999998765210      


Q ss_pred             eecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CC-CHH----HHHHHHh
Q psy2684         254 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NL-PYE----KSRRQLG  325 (356)
Q Consensus       254 lvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~-~~~----~~~~~L~  325 (356)
                                            . .. ....+..++|++|++  .+++..|+.+++....   +. ..+    .+.+.+.
T Consensus        77 ----------------------~-~~-~~~~~~~i~~~~q~~--~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~  130 (252)
T PRK14272         77 ----------------------R-VD-PVAMRRRVGMVFQKP--NPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLR  130 (252)
T ss_pred             ----------------------c-cC-HHHhhceeEEEeccC--ccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence                                  0 00 001134699999986  3777789999875321   21 222    2344566


Q ss_pred             hcCCCC---ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         326 MFGLPS---YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       326 ~~~l~~---~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .+++..   ....+++.+||||||||++||++++
T Consensus       131 ~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~  164 (252)
T PRK14272        131 GAALWDEVKDRLKTPATGLSGGQQQRLCIARALA  164 (252)
T ss_pred             HcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHh
Confidence            666532   1224578999999999999999874

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=3.7e-24  Score=198.05  Aligned_cols=147  Identities=23%  Similarity=0.256  Sum_probs=109.1

Q ss_pred             CCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc-----CCCceeEeeeccccCcCC
Q psy2684         176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGKVLLEKVNFGLDMES  250 (356)
Q Consensus       176 ~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p-----~~G~i~~~g~~~~~~~~~  250 (356)
                      +.++++++|+++.| +++.+|+++||+|.+||+++|+||||||||||+++|+|+++|     ++|+|.++|.++...   
T Consensus        17 ~~~~l~~~nl~~~~-~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~---   92 (274)
T PRK14265         17 DHSVFEVEGVKVFY-GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDS---   92 (274)
T ss_pred             CCceEEEeeEEEEe-CCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccc---
Confidence            35689999999999 456799999999999999999999999999999999999863     689999998765210   


Q ss_pred             eeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CC---CHHHHHHHH
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NL---PYEKSRRQL  324 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~---~~~~~~~~L  324 (356)
                                                ... ....+.+++|++|++.  +++ .++.+++....   ..   ....+.+.+
T Consensus        93 --------------------------~~~-~~~~~~~i~~v~q~~~--l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~l  142 (274)
T PRK14265         93 --------------------------QIN-SVKLRRQVGMVFQRPN--PFP-KSIYENIAFAPRANGYKGNLDELVEDSL  142 (274)
T ss_pred             --------------------------cch-hHHHhhcEEEEccCCc--ccc-ccHHHHHHhHHHhcCchHHHHHHHHHHH
Confidence                                      000 0011347999999873  555 48888875321   11   123345677


Q ss_pred             hhcCCCC---ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         325 GMFGLPS---YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       325 ~~~~l~~---~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +.+++..   ....+++.+|||||||||+||++++
T Consensus       143 ~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~  177 (274)
T PRK14265        143 RRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIA  177 (274)
T ss_pred             HHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence            7777632   1223477999999999999999974

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=2.5e-24  Score=196.82  Aligned_cols=145  Identities=22%  Similarity=0.282  Sum_probs=109.3

Q ss_pred             CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc-----cCCCceeEeeeccccCcCCee
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGKVLLEKVNFGLDMESRV  252 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~-----p~~G~i~~~g~~~~~~~~~~i  252 (356)
                      ++++++|+++.| +.+.+|+++||+|.+||+++|+|+||||||||+++|+|+++     |++|+|.++|.++....    
T Consensus         3 ~~l~~~~l~~~~-~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~----   77 (251)
T PRK14251          3 NIISAKDVHLSY-GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSK----   77 (251)
T ss_pred             ceEEEEeeEEEE-CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEccccc----
Confidence            468999999999 55679999999999999999999999999999999999997     47999999987652100    


Q ss_pred             eeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC-----HHHHHHHH
Q psy2684         253 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP-----YEKSRRQL  324 (356)
Q Consensus       253 alvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~-----~~~~~~~L  324 (356)
                                               .. ....+..++|++|++.  +++ .|+.+++...   .+..     ...+.+++
T Consensus        78 -------------------------~~-~~~~~~~i~~~~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l  128 (251)
T PRK14251         78 -------------------------MD-LVELRKEVGMVFQQPT--PFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESL  128 (251)
T ss_pred             -------------------------ch-HHHhhccEEEEecCCc--cCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence                                     00 0011346999999863  554 6898887532   1211     13456678


Q ss_pred             hhcCCCC---ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         325 GMFGLPS---YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       325 ~~~~l~~---~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +.+++..   ...++++.+||||||||++||++++
T Consensus       129 ~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~  163 (251)
T PRK14251        129 KQAAIWKETKDNLDRNAQAFSGGQQQRICIARALA  163 (251)
T ss_pred             HHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHh
Confidence            8888842   1223467999999999999999974

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.91  E-value=2.6e-24  Score=198.73  Aligned_cols=146  Identities=23%  Similarity=0.327  Sum_probs=108.3

Q ss_pred             CCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc-----cCCCceeEeeeccccCcCC
Q psy2684         176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGKVLLEKVNFGLDMES  250 (356)
Q Consensus       176 ~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~-----p~~G~i~~~g~~~~~~~~~  250 (356)
                      ..++++++|+++.| ++..+|+++||+|.+||+++|+|+||||||||+++|+|+++     |++|+|.++|.++...   
T Consensus        21 ~~~~l~~~~l~~~~-~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~---   96 (271)
T PRK14238         21 KKVVFDTQNLNLWY-GEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDK---   96 (271)
T ss_pred             CceEEEEeeeEEEE-CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccc---
Confidence            35689999999999 45679999999999999999999999999999999999997     6999999998765210   


Q ss_pred             eeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC-H----HHHHH
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP-Y----EKSRR  322 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~-~----~~~~~  322 (356)
                                                ... ....+..++|++|++.  +++ .|+.+++...   .+.. .    ..+.+
T Consensus        97 --------------------------~~~-~~~~~~~i~~v~q~~~--~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~  146 (271)
T PRK14238         97 --------------------------SYS-VEELRTNVGMVFQKPN--PFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEK  146 (271)
T ss_pred             --------------------------ccc-HHHHhhhEEEEecCCc--ccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence                                      000 0011346999999973  555 4888887532   1222 1    22345


Q ss_pred             HHhhcCC----CCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         323 QLGMFGL----PSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       323 ~L~~~~l----~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .+..+++    .+... +++.+|||||||||+||++++
T Consensus       147 ~l~~~~~~~~l~~~~~-~~~~~LSgGe~qrv~laraL~  183 (271)
T PRK14238        147 SLRGAAIWDELKDRLH-DNAYGLSGGQQQRLCIARCLA  183 (271)
T ss_pred             HHHHcCCcchHHHHHh-cCcccCCHHHHHHHHHHHHHH
Confidence            5666643    33333 467999999999999999974

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.91  E-value=1.5e-24  Score=200.20  Aligned_cols=140  Identities=26%  Similarity=0.326  Sum_probs=110.9

Q ss_pred             EEEecceeeeCC-CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         180 LGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       180 l~~~~l~~~~~~-~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      ++++|+++.|++ +..+|+++||+|.+||+++|+|+||||||||+++|+|+++ ++|+|+++|.++...           
T Consensus         3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~-----------   70 (275)
T cd03289           3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSV-----------   70 (275)
T ss_pred             EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhC-----------
Confidence            689999999953 4569999999999999999999999999999999999998 789999998775310           


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCccccCCC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPI  338 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~  338 (356)
                                          . ....+.+++|++|++.  +++ .|+.+++........++++++++.+|+...... .+
T Consensus        71 --------------------~-~~~lr~~i~~v~q~~~--lf~-~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~-~p  125 (275)
T cd03289          71 --------------------P-LQKWRKAFGVIPQKVF--IFS-GTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQ-FP  125 (275)
T ss_pred             --------------------C-HHHHhhhEEEECCCcc--cch-hhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHh-Cc
Confidence                                0 0001346999999974  565 488888743323456778889999999765544 34


Q ss_pred             CC-----------CChHHHHHHHHHHHcC
Q psy2684         339 RD-----------LSGGQKARVALAELTL  356 (356)
Q Consensus       339 ~~-----------LSGGqkqRvalA~~~l  356 (356)
                      ..           ||||||||++|||+++
T Consensus       126 ~~l~~~~~~~g~~LS~G~~qrl~LaRall  154 (275)
T cd03289         126 GQLDFVLVDGGCVLSHGHKQLMCLARSVL  154 (275)
T ss_pred             ccccceecCCCCCCCHHHHHHHHHHHHHh
Confidence            54           9999999999999975

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=2.8e-24  Score=196.30  Aligned_cols=145  Identities=21%  Similarity=0.271  Sum_probs=109.5

Q ss_pred             CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc-----CCCceeEeeeccccCcCCee
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGKVLLEKVNFGLDMESRV  252 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p-----~~G~i~~~g~~~~~~~~~~i  252 (356)
                      ++++++|+++.| ++..+++++||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++...     
T Consensus         2 ~~l~~~~l~~~~-~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~-----   75 (250)
T PRK14262          2 PIIEIENFSAYY-GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDP-----   75 (250)
T ss_pred             ceEEEEeeEEEe-CCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccc-----
Confidence            368999999999 456799999999999999999999999999999999999984     899999998765210     


Q ss_pred             eeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC-CH----HHHHHHH
Q psy2684         253 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-PY----EKSRRQL  324 (356)
Q Consensus       253 alvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~-~~----~~~~~~L  324 (356)
                                              ... ....+..++|++|++.  +++ .|+.+++...   .+. ..    ..+.+++
T Consensus        76 ------------------------~~~-~~~~~~~i~~~~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l  127 (250)
T PRK14262         76 ------------------------QLD-VTEYRKKVGMVFQKPT--PFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESL  127 (250)
T ss_pred             ------------------------hhh-HHHhhhhEEEEecCCc--cCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence                                    000 0011346999999863  555 7888887532   121 11    2355678


Q ss_pred             hhcCCCCc---cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         325 GMFGLPSY---AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       325 ~~~~l~~~---~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +.+++...   ...+++.+||||||||++||++++
T Consensus       128 ~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~  162 (250)
T PRK14262        128 KKAALWDEVKSELNKPGTRLSGGQQQRLCIARALA  162 (250)
T ss_pred             HHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHh
Confidence            88888532   133477999999999999999974

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.91  E-value=6.2e-25  Score=192.68  Aligned_cols=148  Identities=30%  Similarity=0.479  Sum_probs=114.2

Q ss_pred             CCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684         176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV  255 (356)
Q Consensus       176 ~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv  255 (356)
                      .+++++++|+++.| +++.+|+|+||+|++||.++|+||||||||||+++++|.++|++|.+.+.|..+.          
T Consensus        28 ~~~li~l~~v~v~r-~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G----------   96 (257)
T COG1119          28 NEPLIELKNVSVRR-NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFG----------   96 (257)
T ss_pred             CcceEEecceEEEE-CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeecc----------
Confidence            45789999999999 7889999999999999999999999999999999999999999999999988762          


Q ss_pred             cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-------c--CCC---HHHHHHH
Q psy2684         256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-------F--NLP---YEKSRRQ  323 (356)
Q Consensus       256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-------~--~~~---~~~~~~~  323 (356)
                          .|.+                 ....+.+|||+.-.....+..+.++.|.+...       +  ..+   ...+..+
T Consensus        97 ----~~~~-----------------~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~l  155 (257)
T COG1119          97 ----KGET-----------------IFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWL  155 (257)
T ss_pred             ----CCcc-----------------hHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHH
Confidence                1111                 11224567777654433444555555544321       1  112   2346678


Q ss_pred             HhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         324 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       324 L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      |+.+|+.+..+ +++.+||-||||||.|||+++
T Consensus       156 le~~g~~~la~-r~~~~LS~Ge~rrvLiaRALv  187 (257)
T COG1119         156 LELLGAKHLAD-RPFGSLSQGEQRRVLIARALV  187 (257)
T ss_pred             HHHcchhhhcc-CchhhcCHhHHHHHHHHHHHh
Confidence            99999998665 588999999999999999974

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.91  E-value=1.7e-24  Score=196.15  Aligned_cols=141  Identities=25%  Similarity=0.406  Sum_probs=103.2

Q ss_pred             EEEecceeeeCC-CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         180 LGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       180 l~~~~l~~~~~~-~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      ++++|+++.|++ +.++++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...           
T Consensus         1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-----------   69 (237)
T cd03252           1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALA-----------   69 (237)
T ss_pred             CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhc-----------
Confidence            468999999953 35699999999999999999999999999999999999999999999998765210           


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHHHH---------HHhhc-
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRR---------QLGMF-  327 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~---------~L~~~-  327 (356)
                                        ..   ...+..++|++|++.  ++ ..|+.+++.... ......+.+         ++..+ 
T Consensus        70 ------------------~~---~~~~~~i~~~~q~~~--~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  125 (237)
T cd03252          70 ------------------DP---AWLRRQVGVVLQENV--LF-NRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELP  125 (237)
T ss_pred             ------------------CH---HHHhhcEEEEcCCch--hc-cchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCc
Confidence                              00   001346999999863  44 468888875321 122222222         33333 


Q ss_pred             -CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         328 -GLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       328 -~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                       ++..... +++.+|||||||||+||++++
T Consensus       126 ~~~~~~~~-~~~~~LSgG~~qrv~laral~  154 (237)
T cd03252         126 EGYDTIVG-EQGAGLSGGQRQRIAIARALI  154 (237)
T ss_pred             ccccchhh-cCCCcCCHHHHHHHHHHHHHh
Confidence             3443333 367999999999999999974

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.91  E-value=2.9e-24  Score=208.18  Aligned_cols=145  Identities=26%  Similarity=0.407  Sum_probs=119.1

Q ss_pred             CCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684         176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV  255 (356)
Q Consensus       176 ~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv  255 (356)
                      ..++++++|++|+| ++..+|+++||+|++||+++|+|.||||||||+|+|+|.++|++|+|.++|......        
T Consensus         5 ~~~ll~~~~i~K~F-ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~--------   75 (500)
T COG1129           5 TPPLLELRGISKSF-GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFS--------   75 (500)
T ss_pred             ccceeeeecceEEc-CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCC--------
Confidence            35689999999999 678899999999999999999999999999999999999999999999998765321        


Q ss_pred             cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc------C-CC----HHHHHHHH
Q psy2684         256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF------N-LP----YEKSRRQL  324 (356)
Q Consensus       256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~------~-~~----~~~~~~~L  324 (356)
                                             .........|+.++|+.  .+.|++|+.||+....      + ++    ...++++|
T Consensus        76 -----------------------sp~~A~~~GI~~V~QEl--~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l  130 (500)
T COG1129          76 -----------------------SPRDALAAGIATVHQEL--SLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELL  130 (500)
T ss_pred             -----------------------CHHHHHhCCcEEEeech--hccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHH
Confidence                                   00111235689999997  4999999999985321      1 12    24577889


Q ss_pred             hhcCCCCccccCCCCCCChHHHHHHHHHHHc
Q psy2684         325 GMFGLPSYAHTIPIRDLSGGQKARVALAELT  355 (356)
Q Consensus       325 ~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~  355 (356)
                      +.+|+... -+.++.+||+||||-|+|||++
T Consensus       131 ~~lg~~~~-~~~~v~~LsiaqrQ~VeIArAl  160 (500)
T COG1129         131 ARLGLDID-PDTLVGDLSIAQRQMVEIARAL  160 (500)
T ss_pred             HHcCCCCC-hhhhhhhCCHHHHHHHHHHHHH
Confidence            99999644 4458999999999999999986

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=3e-24  Score=196.10  Aligned_cols=145  Identities=25%  Similarity=0.306  Sum_probs=108.8

Q ss_pred             CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccc---ccc--CCCceeEeeeccccCcCCee
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE---LTP--NKGKVLLEKVNFGLDMESRV  252 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl---~~p--~~G~i~~~g~~~~~~~~~~i  252 (356)
                      ++++++|+++.| +++.+|+++||+|.+||+++|+||||||||||+++|+|+   ++|  ++|+|.++|.++....    
T Consensus         2 ~~l~~~~~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~----   76 (250)
T PRK14245          2 VKIDARDVNFWY-GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKG----   76 (250)
T ss_pred             cEEEEEEEEEEE-CCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEeccccc----
Confidence            578999999999 456799999999999999999999999999999999997   455  5899999987653100    


Q ss_pred             eeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC-----HHHHHHHH
Q psy2684         253 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP-----YEKSRRQL  324 (356)
Q Consensus       253 alvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~-----~~~~~~~L  324 (356)
                                               .. ....+..++|++|++.  +++ .|+.+++...   .+..     ...+.+++
T Consensus        77 -------------------------~~-~~~~~~~i~~v~q~~~--~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l  127 (250)
T PRK14245         77 -------------------------VQ-VDELRKNVGMVFQRPN--PFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETL  127 (250)
T ss_pred             -------------------------cc-HHHHhhheEEEecCCc--cCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence                                     00 0011346999999863  555 5888887532   1211     13456788


Q ss_pred             hhcCCCCc---cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         325 GMFGLPSY---AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       325 ~~~~l~~~---~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +.+++.+.   ...+++.+|||||||||+||++++
T Consensus       128 ~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~  162 (250)
T PRK14245        128 KGAALWDEVKDKLKESAFALSGGQQQRLCIARAMA  162 (250)
T ss_pred             HHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHh
Confidence            99998542   223467999999999999999874

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.91  E-value=4.3e-24  Score=189.20  Aligned_cols=128  Identities=28%  Similarity=0.366  Sum_probs=98.2

Q ss_pred             EEEecceeeeCCC----ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684         180 LGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV  255 (356)
Q Consensus       180 l~~~~l~~~~~~~----~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv  255 (356)
                      ++++|+++.|++.    ..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|              
T Consensus         1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g--------------   66 (204)
T cd03250           1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG--------------   66 (204)
T ss_pred             CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC--------------
Confidence            4689999999543    3699999999999999999999999999999999999999999998863              


Q ss_pred             cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCC------
Q psy2684         256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGL------  329 (356)
Q Consensus       256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l------  329 (356)
                                                     +++|++|++.  ++ ..|+.+++............+.+..+++      
T Consensus        67 -------------------------------~i~~~~q~~~--l~-~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~  112 (204)
T cd03250          67 -------------------------------SIAYVSQEPW--IQ-NGTIRENILFGKPFDEERYEKVIKACALEPDLEI  112 (204)
T ss_pred             -------------------------------EEEEEecCch--hc-cCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHh
Confidence                                           4899999974  44 4688888754322222233333333332      


Q ss_pred             -----CCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         330 -----PSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       330 -----~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                           ..... .++.+||||||||++||++++
T Consensus       113 ~~~~~~~~~~-~~~~~lS~G~~qrv~laral~  143 (204)
T cd03250         113 LPDGDLTEIG-EKGINLSGGQKQRISLARAVY  143 (204)
T ss_pred             ccCcccceec-CCCCcCCHHHHHHHHHHHHHh
Confidence                 22223 356899999999999999974

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.90  E-value=2.1e-24  Score=219.24  Aligned_cols=142  Identities=31%  Similarity=0.480  Sum_probs=111.8

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      -++++|+++.|++++++++|+||+|++||++||+|||||||||++++|.|++.|++|+|.++|+++..-           
T Consensus       328 ~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i-----------  396 (567)
T COG1132         328 SIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDI-----------  396 (567)
T ss_pred             eEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhc-----------
Confidence            389999999996567899999999999999999999999999999999999999999999999887411           


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHhhcC---------
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFG---------  328 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~L~~~~---------  328 (356)
                                       .    ....+.+|+|++|++  .+|. .|+.+|+.... +.+.+++.+.++..+         
T Consensus       397 -----------------~----~~~lr~~I~~V~Qd~--~LF~-~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp  452 (567)
T COG1132         397 -----------------S----LDSLRKRIGIVSQDP--LLFS-GTIRENIALGRPDATDEEIEEALKLANAHEFIANLP  452 (567)
T ss_pred             -----------------C----HHHHHHhccEEcccc--eeec-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCc
Confidence                             0    011245799999997  4665 78999986543 356666666655443         


Q ss_pred             --CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         329 --LPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       329 --l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                        ++..... .-..||||||||++|||+++
T Consensus       453 ~g~dt~vge-~G~~LSgGQrQrlaiARall  481 (567)
T COG1132         453 DGYDTIVGE-RGVNLSGGQRQRLAIARALL  481 (567)
T ss_pred             ccccceecC-CCccCCHHHHHHHHHHHHHh
Confidence              3222222 22579999999999999975

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.90  E-value=2.4e-24  Score=217.17  Aligned_cols=143  Identities=36%  Similarity=0.443  Sum_probs=112.9

Q ss_pred             cEEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         179 VLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       179 ~l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      -++++|++++|+++ +++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++....         
T Consensus       320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~---------  390 (529)
T TIGR02857       320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADAD---------  390 (529)
T ss_pred             eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCC---------
Confidence            58999999999654 36999999999999999999999999999999999999999999999998763100         


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHhhcCCCCcccc-
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAHT-  335 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-~~~~~~~~~~~L~~~~l~~~~~~-  335 (356)
                                             ....+.+++|++|++.  +| +.|+.|++... ...+++++.+.++..++.+.... 
T Consensus       391 -----------------------~~~lr~~i~~v~Q~~~--lf-~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~l  444 (529)
T TIGR02857       391 -----------------------ADSWRDQIAWVPQHPF--LF-AGTIAENIRLARPDASDAEIRRALERAGLDEFVAAL  444 (529)
T ss_pred             -----------------------HHHHHhheEEEcCCCc--cc-CcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhC
Confidence                                   0112357999999973  55 46999998653 23466777888887776432211 


Q ss_pred             ---------CCCCCCChHHHHHHHHHHHcC
Q psy2684         336 ---------IPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       336 ---------~~~~~LSGGqkqRvalA~~~l  356 (356)
                               .....||||||||++|||+++
T Consensus       445 p~Gldt~v~e~g~~LSgGq~qri~laRal~  474 (529)
T TIGR02857       445 PQGLDTLIGEGGAGLSGGQAQRLALARAFL  474 (529)
T ss_pred             cccccchhccccccCCHHHHHHHHHHHHHh
Confidence                     123679999999999999975

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=6.4e-24  Score=199.30  Aligned_cols=152  Identities=28%  Similarity=0.280  Sum_probs=112.8

Q ss_pred             CCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc-----cCCCceeEeeeccc
Q psy2684         171 NPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGKVLLEKVNFG  245 (356)
Q Consensus       171 ~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~-----p~~G~i~~~g~~~~  245 (356)
                      .+....++++.++|+++.| ++..+|+++||+|.+|++++|+|+||||||||+++|+|+++     |++|+|.++|.++.
T Consensus        37 ~~~~~~~~~l~i~nl~~~~-~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~  115 (305)
T PRK14264         37 DYEFDGDAKLSVEDLDVYY-GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIY  115 (305)
T ss_pred             ccccCCCceEEEEEEEEEe-CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence            3344456789999999999 45679999999999999999999999999999999999986     68999999987652


Q ss_pred             cCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc------------
Q psy2684         246 LDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF------------  313 (356)
Q Consensus       246 ~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~------------  313 (356)
                      ..        +                     .. ....+.+++|++|++.  +++ .|+.+++....            
T Consensus       116 ~~--------~---------------------~~-~~~~~~~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~  162 (305)
T PRK14264        116 QD--------G---------------------VN-LVELRKRVGMVFQSPN--PFP-KSIRENISYGPRKHGDINTGLLA  162 (305)
T ss_pred             cc--------c---------------------cc-HHHHhhceEEEccCCc--ccc-ccHHHHHHhHHhhcccccccccc
Confidence            10        0                     00 0011346999999863  555 48888875321            


Q ss_pred             ---CCC-----HHHHHHHHhhcCCCC---ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         314 ---NLP-----YEKSRRQLGMFGLPS---YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       314 ---~~~-----~~~~~~~L~~~~l~~---~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                         ...     ...+.++++.+++..   ....+++.+|||||||||+||++++
T Consensus       163 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~  216 (305)
T PRK14264        163 RLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLA  216 (305)
T ss_pred             cccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHh
Confidence               011     234567788888742   1223467999999999999999974

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.90  E-value=7e-24  Score=196.04  Aligned_cols=146  Identities=24%  Similarity=0.269  Sum_probs=110.4

Q ss_pred             CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc-----CCCceeEeeeccccCcCCe
Q psy2684         177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGKVLLEKVNFGLDMESR  251 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p-----~~G~i~~~g~~~~~~~~~~  251 (356)
                      .++++++|+++.| +++.+|+++||+|.+||+++|+||||||||||+++|+|+++|     ++|+|.++|.++....   
T Consensus        23 ~~~l~~~nl~~~~-~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~---   98 (272)
T PRK14236         23 QTALEVRNLNLFY-GDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKK---   98 (272)
T ss_pred             CcEEEEEEEEEEE-CCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccc---
Confidence            4589999999999 456799999999999999999999999999999999999884     8999999987653100   


Q ss_pred             eeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC-C----HHHHHHH
Q psy2684         252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-P----YEKSRRQ  323 (356)
Q Consensus       252 ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~-~----~~~~~~~  323 (356)
                                                .. ....+..++|++|++.  +++. |+.+++...   .+. .    ...+.++
T Consensus        99 --------------------------~~-~~~~~~~i~~v~q~~~--l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~  148 (272)
T PRK14236         99 --------------------------VD-VAELRRRVGMVFQRPN--PFPK-SIYENVVYGLRLQGINNRRVLDEAVERS  148 (272)
T ss_pred             --------------------------cC-HHHHhccEEEEecCCc--cCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence                                      00 0011346999999863  5655 888887532   121 1    1235667


Q ss_pred             HhhcCCCCc---cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         324 LGMFGLPSY---AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       324 L~~~~l~~~---~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ++.+++...   ...+++.+|||||||||+||++++
T Consensus       149 l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~  184 (272)
T PRK14236        149 LRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIA  184 (272)
T ss_pred             HHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHH
Confidence            888888531   223467999999999999999974

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.90  E-value=3.6e-24  Score=184.82  Aligned_cols=111  Identities=29%  Similarity=0.508  Sum_probs=92.5

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG  259 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG  259 (356)
                      ++++|+++.|+ +..+|+++||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...            
T Consensus         1 l~~~~l~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~------------   67 (173)
T cd03230           1 IEVRNLSKRYG-KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKE------------   67 (173)
T ss_pred             CEEEEEEEEEC-CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccc------------
Confidence            46899999994 55799999999999999999999999999999999999999999999998764200            


Q ss_pred             CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCccccCCCC
Q psy2684         260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIR  339 (356)
Q Consensus       260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~  339 (356)
                                           ....+..++|++|++.  +++..|+.+++.                             
T Consensus        68 ---------------------~~~~~~~i~~~~q~~~--~~~~~tv~~~~~-----------------------------   95 (173)
T cd03230          68 ---------------------PEEVKRRIGYLPEEPS--LYENLTVRENLK-----------------------------   95 (173)
T ss_pred             ---------------------hHhhhccEEEEecCCc--cccCCcHHHHhh-----------------------------
Confidence                                 0111346999999863  667778887752                             


Q ss_pred             CCChHHHHHHHHHHHcC
Q psy2684         340 DLSGGQKARVALAELTL  356 (356)
Q Consensus       340 ~LSGGqkqRvalA~~~l  356 (356)
                       |||||+|||+||++++
T Consensus        96 -LS~G~~qrv~laral~  111 (173)
T cd03230          96 -LSGGMKQRLALAQALL  111 (173)
T ss_pred             -cCHHHHHHHHHHHHHH
Confidence             9999999999999974

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.90  E-value=1.7e-24  Score=225.34  Aligned_cols=143  Identities=28%  Similarity=0.358  Sum_probs=112.4

Q ss_pred             cEEEecceeeeCC-CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         179 VLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       179 ~l~~~~l~~~~~~-~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      .++++|++|+|++ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++..-.         
T Consensus       477 ~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~---------  547 (710)
T TIGR03796       477 YVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIP---------  547 (710)
T ss_pred             eEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCC---------
Confidence            5899999999964 357999999999999999999999999999999999999999999999998864100         


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHhhcCCCCcccc-
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAHT-  335 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-~~~~~~~~~~~L~~~~l~~~~~~-  335 (356)
                                             ....+.++||++|++.  +| +.|+.||+... ...+.+++++.++..++.+.... 
T Consensus       548 -----------------------~~~lr~~i~~v~Q~~~--lf-~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~l  601 (710)
T TIGR03796       548 -----------------------REVLANSVAMVDQDIF--LF-EGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSR  601 (710)
T ss_pred             -----------------------HHHHHhheeEEecCCh--hh-hccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhC
Confidence                                   0012457999999973  55 56899998643 24566777777777665432111 


Q ss_pred             ---------CCCCCCChHHHHHHHHHHHcC
Q psy2684         336 ---------IPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       336 ---------~~~~~LSGGqkqRvalA~~~l  356 (356)
                               ..-..||||||||++|||+++
T Consensus       602 p~gl~t~i~e~G~~LSGGQrQRiaLARall  631 (710)
T TIGR03796       602 PGGYDAELAEGGANLSGGQRQRLEIARALV  631 (710)
T ss_pred             cCcccceeccCCCCCCHHHHHHHHHHHHHh
Confidence                     123579999999999999975

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.90  E-value=1.6e-24  Score=225.53  Aligned_cols=142  Identities=27%  Similarity=0.369  Sum_probs=112.4

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      -++++|++|+|++++++|+|+||+|++|++++|+|+||||||||+++|+|++.|++|+|+++|.++..-           
T Consensus       473 ~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~-----------  541 (708)
T TIGR01193       473 DIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDI-----------  541 (708)
T ss_pred             cEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHc-----------
Confidence            489999999996556799999999999999999999999999999999999999999999999886310           


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh--cCCCHHHHHHHHhhcCCCCc----
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL--FNLPYEKSRRQLGMFGLPSY----  332 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~--~~~~~~~~~~~L~~~~l~~~----  332 (356)
                                     .      ....+.++||++|++.  +| +.|+.|++...  ...+.+++.+.++..++.+.    
T Consensus       542 ---------------~------~~~lr~~i~~v~Q~~~--lf-~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~l  597 (708)
T TIGR01193       542 ---------------D------RHTLRQFINYLPQEPY--IF-SGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENM  597 (708)
T ss_pred             ---------------C------HHHHHHheEEEecCce--eh-hHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhc
Confidence                           0      0012457999999973  55 45999998754  34566777777776665321    


Q ss_pred             -------cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         333 -------AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       333 -------~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                             ... ....||||||||++|||+++
T Consensus       598 p~gldt~i~e-~G~~LSgGQrQRialARall  627 (708)
T TIGR01193       598 PLGYQTELSE-EGSSISGGQKQRIALARALL  627 (708)
T ss_pred             ccccCcEecC-CCCCCCHHHHHHHHHHHHHh
Confidence                   112 23579999999999999974

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.90  E-value=1.5e-24  Score=216.66  Aligned_cols=143  Identities=19%  Similarity=0.219  Sum_probs=107.9

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      +++++|+++.| ++..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...           
T Consensus         3 ~l~~~~l~~~~-~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~-----------   70 (490)
T PRK10938          3 SLQISQGTFRL-SDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRL-----------   70 (490)
T ss_pred             eEEEEeEEEEc-CCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccC-----------
Confidence            58999999999 456799999999999999999999999999999999999999999999876543100           


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCC------CCCHHHHHHHhcCCCHHHHHHHHhhcCCCCc
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFP------DDTPCEYLMKLFNLPYEKSRRQLGMFGLPSY  332 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~------~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~  332 (356)
                                          .. ...+..++|++|++...++.      ..++.+++... ....+.+.++++.+|+.+.
T Consensus        71 --------------------~~-~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~  128 (490)
T PRK10938         71 --------------------SF-EQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-VKDPARCEQLAQQFGITAL  128 (490)
T ss_pred             --------------------CH-HHHHHHhceeccCcchhhcccchhhccccHHHhcccc-hhHHHHHHHHHHHcCCHhh
Confidence                                00 00123489999976422221      34566654211 1123457789999999876


Q ss_pred             cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         333 AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       333 ~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .+ +++.+|||||||||+||++++
T Consensus       129 ~~-~~~~~LSgG~~qrv~la~al~  151 (490)
T PRK10938        129 LD-RRFKYLSTGETRKTLLCQALM  151 (490)
T ss_pred             hh-CCcccCCHHHHHHHHHHHHHH
Confidence            54 478999999999999999974

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=7.2e-24  Score=193.74  Aligned_cols=145  Identities=26%  Similarity=0.305  Sum_probs=108.0

Q ss_pred             CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccC-----CCceeEeeeccccCcCCee
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN-----KGKVLLEKVNFGLDMESRV  252 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~-----~G~i~~~g~~~~~~~~~~i  252 (356)
                      ++++++|+++.| +++.+|+++||+|.+|++++|+||||||||||+++|+|+++|+     +|+|.++|.++....    
T Consensus         3 ~~l~~~~l~~~~-~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~----   77 (251)
T PRK14249          3 PKIKIRGVNFFY-HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPN----   77 (251)
T ss_pred             ceEEEEEEEEEE-CCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccc----
Confidence            468999999999 4567999999999999999999999999999999999999997     699999986642100    


Q ss_pred             eeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC-----HHHHHHHH
Q psy2684         253 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP-----YEKSRRQL  324 (356)
Q Consensus       253 alvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~-----~~~~~~~L  324 (356)
                                               .. ....+..++|++|++.  +++. |+.+++...   .+..     ...+.+.+
T Consensus        78 -------------------------~~-~~~~~~~i~~v~q~~~--~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l  128 (251)
T PRK14249         78 -------------------------LD-VVNLRKRVGMVFQQPN--PFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSL  128 (251)
T ss_pred             -------------------------cC-hHHhhceEEEEecCCc--cCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHH
Confidence                                     00 0011356999999973  5554 888887532   1221     12345567


Q ss_pred             hhcCCCCc---cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         325 GMFGLPSY---AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       325 ~~~~l~~~---~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ..+++.+.   ...+++.+|||||||||+||++++
T Consensus       129 ~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~  163 (251)
T PRK14249        129 RQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLA  163 (251)
T ss_pred             HHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence            77776421   223467999999999999999974

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.90  E-value=3.5e-24  Score=213.97  Aligned_cols=140  Identities=19%  Similarity=0.266  Sum_probs=110.3

Q ss_pred             EecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCc
Q psy2684         182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIG  261 (356)
Q Consensus       182 ~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~G  261 (356)
                      ++|+++.| +++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++....             
T Consensus         1 ~~nl~~~~-~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-------------   66 (491)
T PRK10982          1 MSNISKSF-PGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKS-------------   66 (491)
T ss_pred             CCceEEEe-CCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCC-------------
Confidence            46899999 5667999999999999999999999999999999999999999999999987653100             


Q ss_pred             hhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc----CC--C----HHHHHHHHhhcCCCC
Q psy2684         262 KSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF----NL--P----YEKSRRQLGMFGLPS  331 (356)
Q Consensus       262 KsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~----~~--~----~~~~~~~L~~~~l~~  331 (356)
                                        .....+..++|++|++  .+++..|+.+++....    +.  .    ...+.++++.+++..
T Consensus        67 ------------------~~~~~~~~i~~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  126 (491)
T PRK10982         67 ------------------SKEALENGISMVHQEL--NLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDI  126 (491)
T ss_pred             ------------------HHHHHhCCEEEEeccc--ccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCC
Confidence                              0000124699999986  3677889999875321    11  1    134667899999987


Q ss_pred             ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         332 YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       332 ~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ..+ +++.+|||||||||+||++++
T Consensus       127 ~~~-~~~~~LSgGq~qrv~lA~al~  150 (491)
T PRK10982        127 DPR-AKVATLSVSQMQMIEIAKAFS  150 (491)
T ss_pred             Ccc-CchhhCCHHHHHHHHHHHHHH
Confidence            655 467999999999999999974

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.90  E-value=5.5e-24  Score=186.56  Aligned_cols=85  Identities=36%  Similarity=0.583  Sum_probs=77.6

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQ----TWKKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~----~~~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .+|.+.+|||||+||++|||||+.+|++|||||||++||+.....+.++|.    +++.|+|+||||...+..+||||++
T Consensus       135 l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~V  214 (252)
T COG1124         135 LDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAV  214 (252)
T ss_pred             HhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheee
Confidence            468899999999999999999999999999999999999988766666554    4678999999999999999999999


Q ss_pred             EeCCeEeEe
Q psy2684          78 LDMKKLFYY   86 (356)
Q Consensus        78 l~~g~~~~~   86 (356)
                      |++|++++.
T Consensus       215 m~~G~ivE~  223 (252)
T COG1124         215 MDNGQIVEI  223 (252)
T ss_pred             eeCCeEEEe
Confidence            999999975

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=6.5e-24  Score=193.78  Aligned_cols=143  Identities=24%  Similarity=0.292  Sum_probs=107.8

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc-----CCCceeEeeeccccCcCCeee
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGKVLLEKVNFGLDMESRVA  253 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p-----~~G~i~~~g~~~~~~~~~~ia  253 (356)
                      +++++|+++.| +++.+++++||+|.+||+++|+||||||||||+++|+|+++|     ++|+|.++|.++...      
T Consensus         3 ~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~------   75 (249)
T PRK14253          3 KFNIENLDLFY-GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGN------   75 (249)
T ss_pred             eEEEeccEEEE-CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccc------
Confidence            58999999999 456799999999999999999999999999999999999986     599999998764200      


Q ss_pred             eecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC-H----HHHHHHHh
Q psy2684         254 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP-Y----EKSRRQLG  325 (356)
Q Consensus       254 lvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~-~----~~~~~~L~  325 (356)
                                              ... ...+..++|++|++.  +++ .|+.+++...   .+.. .    ..+.+.++
T Consensus        76 ------------------------~~~-~~~~~~i~~~~q~~~--~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~  127 (249)
T PRK14253         76 ------------------------IDV-ADLRIKVGMVFQKPN--PFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLR  127 (249)
T ss_pred             ------------------------cch-HHHHhheeEEecCCC--cCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHH
Confidence                                    000 011346999999863  565 7888887532   1221 1    23455677


Q ss_pred             hcCCCCc---cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         326 MFGLPSY---AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       326 ~~~l~~~---~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .+++...   ..+.++.+|||||||||+||++++
T Consensus       128 ~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~  161 (249)
T PRK14253        128 GAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIA  161 (249)
T ss_pred             HcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHH
Confidence            8887431   223467999999999999999974

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.90  E-value=3.1e-24  Score=218.00  Aligned_cols=144  Identities=30%  Similarity=0.406  Sum_probs=115.4

Q ss_pred             CcEEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684         178 PVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG  256 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG  256 (356)
                      ..++++|+++.|+++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++..-.        
T Consensus       337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~--------  408 (574)
T PRK11160        337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYS--------  408 (574)
T ss_pred             CeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCC--------
Confidence            358999999999653 56999999999999999999999999999999999999999999999998763100        


Q ss_pred             CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHhhcCCCCcccc
Q psy2684         257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAHT  335 (356)
Q Consensus       257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-~~~~~~~~~~~L~~~~l~~~~~~  335 (356)
                                              ....+..++|++|++.  +|+ .|+.||+... .+.+.+++.+.++.+++.+....
T Consensus       409 ------------------------~~~~r~~i~~v~Q~~~--lf~-~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~  461 (574)
T PRK11160        409 ------------------------EAALRQAISVVSQRVH--LFS-ATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED  461 (574)
T ss_pred             ------------------------HHHHHhheeEEcccch--hhc-ccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC
Confidence                                    0112356999999973  554 5899998643 34577788889999888654332


Q ss_pred             ---------CCCCCCChHHHHHHHHHHHcC
Q psy2684         336 ---------IPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       336 ---------~~~~~LSGGqkqRvalA~~~l  356 (356)
                               .....||||||||++|||+++
T Consensus       462 p~GldT~vge~g~~LSgGqrqRialARall  491 (574)
T PRK11160        462 DKGLNAWLGEGGRQLSGGEQRRLGIARALL  491 (574)
T ss_pred             ccccCchhcCCCCCCCHHHHHHHHHHHHHh
Confidence                     123579999999999999975

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.90  E-value=1.6e-24  Score=178.00  Aligned_cols=147  Identities=28%  Similarity=0.459  Sum_probs=119.4

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG  259 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG  259 (356)
                      +.++++.+.| |...+|.|++|+-+.||.+.++||||+|||||++.+.-+.-|.+|+..+-|..|..+.           
T Consensus         3 irv~~in~~y-g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~-----------   70 (242)
T COG4161           3 IQLNGINCFY-GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSK-----------   70 (242)
T ss_pred             eEEccccccc-ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEeccccccccc-----------
Confidence            6889999999 6677999999999999999999999999999999999999999999999877664321           


Q ss_pred             CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh----cCCCHH----HHHHHHhhcCCCC
Q psy2684         260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLPYE----KSRRQLGMFGLPS  331 (356)
Q Consensus       260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~----~~~~~~----~~~~~L~~~~l~~  331 (356)
                                    .|....+ ...++++|++||.+  .+.|.+|+.|++...    .+.+.+    ++.++|+++.+..
T Consensus        71 --------------~~~~k~i-~~lr~~vgmvfqqy--~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~  133 (242)
T COG4161          71 --------------TPSDKAI-RDLRRNVGMVFQQY--NLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKP  133 (242)
T ss_pred             --------------CccHHHH-HHHHHhhhhhhhhh--ccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhcccc
Confidence                          0111111 12256799999986  589999999998643    345543    4567899999999


Q ss_pred             ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         332 YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       332 ~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ..++.| -.|||||+|||||||+|+
T Consensus       134 ~adr~p-lhlsggqqqrvaiaralm  157 (242)
T COG4161         134 YADRYP-LHLSGGQQQRVAIARALM  157 (242)
T ss_pred             ccccCc-eecccchhhhHHHHHHHh
Confidence            888765 689999999999999974

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=9.7e-24  Score=192.97  Aligned_cols=146  Identities=26%  Similarity=0.309  Sum_probs=108.0

Q ss_pred             CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc--c---CCCceeEeeeccccCcCCe
Q psy2684         177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT--P---NKGKVLLEKVNFGLDMESR  251 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~--p---~~G~i~~~g~~~~~~~~~~  251 (356)
                      +++++++|+++.| +.+.+|+++||+|.+||+++|+|+||||||||+++|+|+++  |   ++|+|.++|.++...    
T Consensus         3 ~~~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~----   77 (252)
T PRK14255          3 KKIITSSDVHLFY-GKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAP----   77 (252)
T ss_pred             cceEEEEeEEEEE-CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccc----
Confidence            4679999999999 45679999999999999999999999999999999999975  5   589999998765200    


Q ss_pred             eeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC-C----HHHHHHH
Q psy2684         252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-P----YEKSRRQ  323 (356)
Q Consensus       252 ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~-~----~~~~~~~  323 (356)
                                              . .. ....+..++|++|++.  +++ .|+.+++...   .+. .    ...+.+.
T Consensus        78 ------------------------~-~~-~~~~~~~i~~~~q~~~--~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~  128 (252)
T PRK14255         78 ------------------------N-ED-VVQLRKQVGMVFQQPN--PFP-FSIYENVIYGLRLAGVKDKAVLDEAVETS  128 (252)
T ss_pred             ------------------------c-cc-HHHhcCeEEEEECCCc--cCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence                                    0 00 0011346999999863  555 6888887532   121 1    1234556


Q ss_pred             HhhcCCCC---ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         324 LGMFGLPS---YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       324 L~~~~l~~---~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ++.+++..   ....+++.+|||||||||+||++++
T Consensus       129 l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~  164 (252)
T PRK14255        129 LKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLA  164 (252)
T ss_pred             HHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHh
Confidence            77777632   1223467999999999999999974

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.90  E-value=5.7e-24  Score=192.62  Aligned_cols=134  Identities=29%  Similarity=0.402  Sum_probs=102.1

Q ss_pred             eeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCchhhHH
Q psy2684         187 FGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL  266 (356)
Q Consensus       187 ~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll  266 (356)
                      +.| +.+++|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+...                    
T Consensus        29 ~~~-~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~--------------------   87 (236)
T cd03267          29 RKY-REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWK--------------------   87 (236)
T ss_pred             ccc-CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccc--------------------
Confidence            455 45679999999999999999999999999999999999999999999998764310                    


Q ss_pred             HHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcCCCCccccCCCC
Q psy2684         267 NLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIR  339 (356)
Q Consensus       267 ~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~  339 (356)
                                   .....+..++|++|+. ..+++..|+.+++...   .+...    ..+..+++.+|+.+..+. ++.
T Consensus        88 -------------~~~~~~~~i~~~~~~~-~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~  152 (236)
T cd03267          88 -------------RRKKFLRRIGVVFGQK-TQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDT-PVR  152 (236)
T ss_pred             -------------cchhhcccEEEEcCCc-cccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcC-Chh
Confidence                         0011134689998542 2466778998876432   22222    235567889999765554 679


Q ss_pred             CCChHHHHHHHHHHHcC
Q psy2684         340 DLSGGQKARVALAELTL  356 (356)
Q Consensus       340 ~LSGGqkqRvalA~~~l  356 (356)
                      +||||||||++||++++
T Consensus       153 ~LS~G~~qrl~la~al~  169 (236)
T cd03267         153 QLSLGQRMRAEIAAALL  169 (236)
T ss_pred             hCCHHHHHHHHHHHHHh
Confidence            99999999999999974

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.90  E-value=5.7e-24  Score=192.36  Aligned_cols=141  Identities=30%  Similarity=0.413  Sum_probs=104.1

Q ss_pred             EEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         180 LGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       180 l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      ++++|+++.|++. ..+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...           
T Consensus         1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----------   69 (234)
T cd03251           1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDY-----------   69 (234)
T ss_pred             CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhC-----------
Confidence            4689999999432 2699999999999999999999999999999999999999999999998654200           


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHH---------HHHHhhc-
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKS---------RRQLGMF-  327 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~---------~~~L~~~-  327 (356)
                                          . ....+..++|++|++.  +++ .|+.+++.... ......+         .+++..+ 
T Consensus        70 --------------------~-~~~~~~~i~~~~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  125 (234)
T cd03251          70 --------------------T-LASLRRQIGLVSQDVF--LFN-DTVAENIAYGRPGATREEVEEAARAANAHEFIMELP  125 (234)
T ss_pred             --------------------C-HHHHHhhEEEeCCCCe--ecc-ccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcc
Confidence                                0 0001346899999863  554 58888875321 1222222         2344444 


Q ss_pred             -CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         328 -GLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       328 -~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                       ++..... .++.+|||||||||+||++++
T Consensus       126 ~~l~~~~~-~~~~~LS~G~~qrv~la~al~  154 (234)
T cd03251         126 EGYDTVIG-ERGVKLSGGQRQRIAIARALL  154 (234)
T ss_pred             cCcceeec-cCCCcCCHHHHHHHHHHHHHh
Confidence             5555444 367999999999999999974

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.90  E-value=7e-24  Score=195.22  Aligned_cols=145  Identities=25%  Similarity=0.260  Sum_probs=107.6

Q ss_pred             CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc-----cCCCceeEeeeccccCcCCee
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGKVLLEKVNFGLDMESRV  252 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~-----p~~G~i~~~g~~~~~~~~~~i  252 (356)
                      ++++++|+++.| ++..+|+++||+|.+||+++|+|+||||||||+++|+|++.     |++|+|.++|.++....    
T Consensus         9 ~~l~i~~v~~~~-~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~----   83 (264)
T PRK14243          9 TVLRTENLNVYY-GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPD----   83 (264)
T ss_pred             eEEEEeeeEEEE-CCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccc----
Confidence            479999999999 45679999999999999999999999999999999999986     47999999987642000    


Q ss_pred             eeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCC---HHHHHHHHhh
Q psy2684         253 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLP---YEKSRRQLGM  326 (356)
Q Consensus       253 alvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~---~~~~~~~L~~  326 (356)
                                               .. ....+.+++|++|++.  +++ .|+.+++....   +..   .+.+.++++.
T Consensus        84 -------------------------~~-~~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~  134 (264)
T PRK14243         84 -------------------------VD-PVEVRRRIGMVFQKPN--PFP-KSIYDNIAYGARINGYKGDMDELVERSLRQ  134 (264)
T ss_pred             -------------------------cC-hHHHhhhEEEEccCCc--ccc-ccHHHHHHhhhhhcCcchHHHHHHHHHHHH
Confidence                                     00 0011346999999863  555 48888875321   111   2334556777


Q ss_pred             cCCCC---ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         327 FGLPS---YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       327 ~~l~~---~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +++..   ....+++.+|||||||||+||++++
T Consensus       135 ~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~  167 (264)
T PRK14243        135 AALWDEVKDKLKQSGLSLSGGQQQRLCIARAIA  167 (264)
T ss_pred             hCchhhHHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence            77642   1223467899999999999999974

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.90  E-value=3.8e-24  Score=193.77  Aligned_cols=141  Identities=30%  Similarity=0.362  Sum_probs=103.3

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG  259 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG  259 (356)
                      ++++|+++.|+++..+++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++...            
T Consensus         1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~------------   68 (236)
T cd03253           1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREV------------   68 (236)
T ss_pred             CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhC------------
Confidence            46899999995446799999999999999999999999999999999999999999999998765210            


Q ss_pred             CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHhhcC----------
Q psy2684         260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFG----------  328 (356)
Q Consensus       260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~L~~~~----------  328 (356)
                                         . ....+..++|++|++.  +++ .|+.+++.... ......+...+..++          
T Consensus        69 -------------------~-~~~~~~~i~~~~q~~~--~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~  125 (236)
T cd03253          69 -------------------T-LDSLRRAIGVVPQDTV--LFN-DTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPD  125 (236)
T ss_pred             -------------------C-HHHHHhhEEEECCCCh--hhc-chHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccc
Confidence                               0 0001245899999973  554 68888875421 222233333333333          


Q ss_pred             -CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         329 -LPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       329 -l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                       +..... +++.+|||||||||+||++++
T Consensus       126 ~~~~~~~-~~~~~LS~G~~~rl~la~aL~  153 (236)
T cd03253         126 GYDTIVG-ERGLKLSGGEKQRVAIARAIL  153 (236)
T ss_pred             cccchhh-cCCCcCCHHHHHHHHHHHHHh
Confidence             333233 356899999999999999974

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=8.2e-24  Score=194.27  Aligned_cols=145  Identities=26%  Similarity=0.266  Sum_probs=109.0

Q ss_pred             CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc-----CCCceeEeeeccccCcCCee
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGKVLLEKVNFGLDMESRV  252 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p-----~~G~i~~~g~~~~~~~~~~i  252 (356)
                      ++++++|+++.| ++..+++++||+|.+||+++|+|+||||||||+++|+|+++|     ++|+|.++|.++....    
T Consensus         6 ~~l~~~~l~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~----   80 (259)
T PRK14260          6 PAIKVKDLSFYY-NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPR----   80 (259)
T ss_pred             ceEEEEEEEEEE-CCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccc----
Confidence            368999999999 456799999999999999999999999999999999999985     4899999987652100    


Q ss_pred             eeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cC-CCH----HHHHHHH
Q psy2684         253 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FN-LPY----EKSRRQL  324 (356)
Q Consensus       253 alvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~-~~~----~~~~~~L  324 (356)
                                               .. ....+..++|++|++.  +++ .|+.+++...   .+ .+.    ..+.+.+
T Consensus        81 -------------------------~~-~~~~~~~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l  131 (259)
T PRK14260         81 -------------------------IN-INRLRRQIGMVFQRPN--PFP-MSIYENVAYGVRISAKLPQADLDEIVESAL  131 (259)
T ss_pred             -------------------------cc-hHhhhhheEEEecccc--cCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence                                     00 0011346999999873  565 7999887532   11 121    2355678


Q ss_pred             hhcCCCC---ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         325 GMFGLPS---YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       325 ~~~~l~~---~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ..+++..   ....+++.+|||||||||+||++++
T Consensus       132 ~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~  166 (259)
T PRK14260        132 KGAALWQEVKDKLNKSALGLSGGQQQRLCIARALA  166 (259)
T ss_pred             HHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHh
Confidence            8888742   1223467999999999999999974

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.90  E-value=2.4e-24  Score=205.09  Aligned_cols=144  Identities=27%  Similarity=0.447  Sum_probs=119.7

Q ss_pred             CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      +.++++++++.| ++..+.++|||+|.+||+.||+|.||||||||+++|+|+++|++|+|+++|+...+.        +|
T Consensus         3 ~~l~~~~itK~f-~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~--------sP   73 (501)
T COG3845           3 PALEMRGITKRF-PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIK--------SP   73 (501)
T ss_pred             ceEEEeccEEEc-CCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccC--------CH
Confidence            568999999999 478899999999999999999999999999999999999999999999999876432        11


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC------CC----HHHHHHHHhhc
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN------LP----YEKSRRQLGMF  327 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~------~~----~~~~~~~L~~~  327 (356)
                      +                       ...+..||+|+|++  .+++..|+.||+.....      .+    ..++.++.+++
T Consensus        74 ~-----------------------dA~~~GIGMVhQHF--~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~y  128 (501)
T COG3845          74 R-----------------------DAIRLGIGMVHQHF--MLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERY  128 (501)
T ss_pred             H-----------------------HHHHcCCcEEeecc--ccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHh
Confidence            1                       11245799999997  58999999999864321      12    24567788999


Q ss_pred             CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         328 GLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       328 ~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ||+-+.+. ++.+||-||||||.|-++|.
T Consensus       129 Gl~vdp~~-~V~dLsVG~qQRVEIlKaLy  156 (501)
T COG3845         129 GLPVDPDA-KVADLSVGEQQRVEILKALY  156 (501)
T ss_pred             CCCCCccc-eeecCCcchhHHHHHHHHHh
Confidence            99876665 78999999999999999873

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.90  E-value=8.3e-24  Score=192.92  Aligned_cols=144  Identities=22%  Similarity=0.299  Sum_probs=103.6

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccc--ccCCCceeEeeeccccCcCCeeeeec
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL--TPNKGKVLLEKVNFGLDMESRVALVG  256 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~--~p~~G~i~~~g~~~~~~~~~~ialvG  256 (356)
                      +++++|+++.|+ ++++++++||+|.+|++++|+||||||||||+++|+|++  +|++|+|.++|.++...         
T Consensus         1 ~i~~~nl~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~---------   70 (248)
T PRK09580          1 MLSIKDLHVSVE-DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLEL---------   70 (248)
T ss_pred             CeEEEEEEEEeC-CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccC---------
Confidence            478999999994 567999999999999999999999999999999999995  69999999998654200         


Q ss_pred             CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh------c-C---CC----HHHHHH
Q psy2684         257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL------F-N---LP----YEKSRR  322 (356)
Q Consensus       257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~------~-~---~~----~~~~~~  322 (356)
                                       .+     ....+..++|++|++.  +++..+..++....      . .   ..    ...+.+
T Consensus        71 -----------------~~-----~~~~~~~i~~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (248)
T PRK09580         71 -----------------SP-----EDRAGEGIFMAFQYPV--EIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEE  126 (248)
T ss_pred             -----------------CH-----HHHhhcceEEEecCch--hccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHH
Confidence                             00     0001235899999863  44444443332110      0 0   11    123456


Q ss_pred             HHhhcCCCCccccCCCC-CCChHHHHHHHHHHHcC
Q psy2684         323 QLGMFGLPSYAHTIPIR-DLSGGQKARVALAELTL  356 (356)
Q Consensus       323 ~L~~~~l~~~~~~~~~~-~LSGGqkqRvalA~~~l  356 (356)
                      .++.++++.....+++. .|||||||||+||++++
T Consensus       127 ~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~  161 (248)
T PRK09580        127 KIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAV  161 (248)
T ss_pred             HHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHH
Confidence            78889986433334554 79999999999999974

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.90  E-value=8.2e-24  Score=181.28  Aligned_cols=107  Identities=29%  Similarity=0.415  Sum_probs=89.9

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG  259 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG  259 (356)
                      ++++|+++.|++++.+++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++                  
T Consensus         1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~------------------   62 (166)
T cd03223           1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPE------------------   62 (166)
T ss_pred             CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC------------------
Confidence            46899999995446799999999999999999999999999999999999999999998753                  


Q ss_pred             CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCccccCCCC
Q psy2684         260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIR  339 (356)
Q Consensus       260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~  339 (356)
                                               ..+++|++|++.  ++ ..|+.+++...                        ++.
T Consensus        63 -------------------------~~~i~~~~q~~~--~~-~~tv~~nl~~~------------------------~~~   90 (166)
T cd03223          63 -------------------------GEDLLFLPQRPY--LP-LGTLREQLIYP------------------------WDD   90 (166)
T ss_pred             -------------------------CceEEEECCCCc--cc-cccHHHHhhcc------------------------CCC
Confidence                                     136899999863  33 56888876321                        247


Q ss_pred             CCChHHHHHHHHHHHcC
Q psy2684         340 DLSGGQKARVALAELTL  356 (356)
Q Consensus       340 ~LSGGqkqRvalA~~~l  356 (356)
                      +||||||||++||++++
T Consensus        91 ~LS~G~~~rv~laral~  107 (166)
T cd03223          91 VLSGGEQQRLAFARLLL  107 (166)
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            89999999999999974

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.90  E-value=2.5e-24  Score=219.45  Aligned_cols=143  Identities=30%  Similarity=0.373  Sum_probs=111.5

Q ss_pred             cEEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         179 VLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       179 ~l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      -++++|+++.|+++ +++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++..-.         
T Consensus       341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~---------  411 (582)
T PRK11176        341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYT---------  411 (582)
T ss_pred             eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcC---------
Confidence            48999999999653 57999999999999999999999999999999999999999999999998763100         


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc--CCCHHHHHHHHhhcCCCCccc-
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF--NLPYEKSRRQLGMFGLPSYAH-  334 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~--~~~~~~~~~~L~~~~l~~~~~-  334 (356)
                                             ....+..++|++|++.  +| +.|+.+++....  ..+.+++++.++..++.+... 
T Consensus       412 -----------------------~~~~~~~i~~v~Q~~~--lf-~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~  465 (582)
T PRK11176        412 -----------------------LASLRNQVALVSQNVH--LF-NDTIANNIAYARTEQYSREQIEEAARMAYAMDFINK  465 (582)
T ss_pred             -----------------------HHHHHhhceEEccCce--ee-cchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHh
Confidence                                   0112356999999973  55 468999986532  256677888877776533211 


Q ss_pred             -----cCC----CCCCChHHHHHHHHHHHcC
Q psy2684         335 -----TIP----IRDLSGGQKARVALAELTL  356 (356)
Q Consensus       335 -----~~~----~~~LSGGqkqRvalA~~~l  356 (356)
                           +.+    -..||||||||++|||+++
T Consensus       466 lp~Gldt~ig~~g~~LSGGqrQRi~LARall  496 (582)
T PRK11176        466 MDNGLDTVIGENGVLLSGGQRQRIAIARALL  496 (582)
T ss_pred             cccccCceeCCCCCcCCHHHHHHHHHHHHHH
Confidence                 111    2569999999999999974

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.90  E-value=3.7e-24  Score=222.38  Aligned_cols=143  Identities=29%  Similarity=0.384  Sum_probs=111.7

Q ss_pred             cEEEecceeeeCC--CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684         179 VLGLHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG  256 (356)
Q Consensus       179 ~l~~~~l~~~~~~--~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG  256 (356)
                      .++++||++.|++  ++++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++..-.        
T Consensus       478 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~--------  549 (711)
T TIGR00958       478 LIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYD--------  549 (711)
T ss_pred             eEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcC--------
Confidence            5899999999964  357999999999999999999999999999999999999999999999998863100        


Q ss_pred             CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHhhcCCCCcccc
Q psy2684         257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAHT  335 (356)
Q Consensus       257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-~~~~~~~~~~~L~~~~l~~~~~~  335 (356)
                                              ....+.+|+|++|++.  +| +.|+.||+... .+.+.+++.+.++..++.+....
T Consensus       550 ------------------------~~~lr~~i~~v~Q~~~--lF-~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~  602 (711)
T TIGR00958       550 ------------------------HHYLHRQVALVGQEPV--LF-SGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIME  602 (711)
T ss_pred             ------------------------HHHHHhhceEEecCcc--cc-ccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHh
Confidence                                    0112357999999973  44 56899998644 23556777777777765432111


Q ss_pred             ----------CCCCCCChHHHHHHHHHHHcC
Q psy2684         336 ----------IPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       336 ----------~~~~~LSGGqkqRvalA~~~l  356 (356)
                                ..-..||||||||++|||+++
T Consensus       603 lp~GldT~ige~G~~LSGGQkQRlalARALl  633 (711)
T TIGR00958       603 FPNGYDTEVGEKGSQLSGGQKQRIAIARALV  633 (711)
T ss_pred             CCCccCCcccCCCCcCCHHHHHHHHHHHHHh
Confidence                      122579999999999999974

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=1e-23  Score=192.98  Aligned_cols=146  Identities=23%  Similarity=0.249  Sum_probs=108.6

Q ss_pred             CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc-----CCCceeEeeeccccCcCCe
Q psy2684         177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGKVLLEKVNFGLDMESR  251 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p-----~~G~i~~~g~~~~~~~~~~  251 (356)
                      .++++++|+++.| +++.+|+++||+|.+||+++|+||||||||||+++|+|++.|     ++|+|.++|.++...    
T Consensus         4 ~~~i~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~----   78 (253)
T PRK14261          4 EIILSTKNLNLWY-GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDS----   78 (253)
T ss_pred             cceEEEeeeEEEE-CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccc----
Confidence            3579999999999 566799999999999999999999999999999999999763     489999998765310    


Q ss_pred             eeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC-C----HHHHHHH
Q psy2684         252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-P----YEKSRRQ  323 (356)
Q Consensus       252 ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~-~----~~~~~~~  323 (356)
                                               ... ....+..++|++|++.  +++ .|+.+++...   .+. .    ...+.++
T Consensus        79 -------------------------~~~-~~~~~~~i~~~~q~~~--~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~  129 (253)
T PRK14261         79 -------------------------GAD-VVALRRKIGMVFQRPN--PFP-KSIYENVAYGPRIHGEKNKKTLDTIVEKS  129 (253)
T ss_pred             -------------------------ccc-hhhhhceEEEEecCCc--cCc-ccHHHHHHhhHHhcCCCCHHHHHHHHHHH
Confidence                                     000 0111346999999873  555 4898887532   121 1    1235567


Q ss_pred             HhhcCCCCc---cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         324 LGMFGLPSY---AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       324 L~~~~l~~~---~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ++.+++.+.   ...+++..||||||||++||++++
T Consensus       130 l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~  165 (253)
T PRK14261        130 LKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLA  165 (253)
T ss_pred             HHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHh
Confidence            788877431   123467999999999999999974

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=1e-23  Score=193.87  Aligned_cols=144  Identities=24%  Similarity=0.298  Sum_probs=108.3

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccC-----CCceeEeeeccccCcCCeee
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN-----KGKVLLEKVNFGLDMESRVA  253 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~-----~G~i~~~g~~~~~~~~~~ia  253 (356)
                      +++++|+++.| ++..+|+++||+|++|++++|+|+||||||||+++|+|+++|+     +|+|.++|.++....     
T Consensus         7 ~l~~~nl~~~~-~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~-----   80 (261)
T PRK14258          7 AIKVNNLSFYY-DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERR-----   80 (261)
T ss_pred             eEEEeeEEEEe-CCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccc-----
Confidence            68999999999 4557999999999999999999999999999999999999985     788888776542100     


Q ss_pred             eecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC-CH----HHHHHHHh
Q psy2684         254 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-PY----EKSRRQLG  325 (356)
Q Consensus       254 lvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~-~~----~~~~~~L~  325 (356)
                                              .. ....+..++|++|++.  +++ .|+.+++...   .+. +.    ..+.++++
T Consensus        81 ------------------------~~-~~~~~~~i~~~~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~  132 (261)
T PRK14258         81 ------------------------VN-LNRLRRQVSMVHPKPN--LFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALK  132 (261)
T ss_pred             ------------------------cc-hHHhhccEEEEecCCc--cCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence                                    00 0011346999999863  666 7898887532   121 21    23566788


Q ss_pred             hcCCCCc---cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         326 MFGLPSY---AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       326 ~~~l~~~---~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .+++...   ...+++.+|||||+|||+||++++
T Consensus       133 ~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~  166 (261)
T PRK14258        133 DADLWDEIKHKIHKSALDLSGGQQQRLCIARALA  166 (261)
T ss_pred             HcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHh
Confidence            8887431   234577999999999999999974

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.90  E-value=4.3e-24  Score=191.03  Aligned_cols=115  Identities=29%  Similarity=0.413  Sum_probs=95.3

Q ss_pred             CcEEEecceeeeCCC--------ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcC
Q psy2684         178 PVLGLHDVTFGYPGG--------KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDME  249 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~--------~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~  249 (356)
                      ++++++|+++.|+-+        ..++++|||+|++||+++|||+|||||||+-++|.|+++|++|+|+|+|.++..   
T Consensus         3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~---   79 (268)
T COG4608           3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITK---   79 (268)
T ss_pred             ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhh---
Confidence            578999999999532        268999999999999999999999999999999999999999999999876420   


Q ss_pred             CeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCC
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGL  329 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l  329 (356)
                                                                       +.     .       ....+.+.++|+.+|+
T Consensus        80 -------------------------------------------------~~-----~-------~~~~~~v~elL~~Vgl   98 (268)
T COG4608          80 -------------------------------------------------LS-----K-------EERRERVLELLEKVGL   98 (268)
T ss_pred             -------------------------------------------------cc-----h-------hHHHHHHHHHHHHhCC
Confidence                                                             00     0       0112457789999999


Q ss_pred             CCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         330 PSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       330 ~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ......+.+++|||||+||++|||++.
T Consensus        99 ~~~~~~ryPhelSGGQrQRi~IARALa  125 (268)
T COG4608          99 PEEFLYRYPHELSGGQRQRIGIARALA  125 (268)
T ss_pred             CHHHhhcCCcccCchhhhhHHHHHHHh
Confidence            875555677999999999999999973

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.90  E-value=4.6e-22  Score=198.38  Aligned_cols=159  Identities=23%  Similarity=0.287  Sum_probs=114.9

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEecChhHHhhhcCEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEP--TLLLLDEPTNHLDLNAVIWLDNYLQT---WKKTLLVVSHDQSFLNNICTDII   76 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p--~~llLDEPt~~LD~~~~~~l~~~l~~---~~~tvi~vsHd~~~l~~~~~~i~   76 (356)
                      ++|...+|||||.||+.||..+-+.=  =+++||||+-+|=+.-.+.|.+.|++   .|-|||+|+||-+.+. .||+|+
T Consensus       475 L~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~-~AD~iI  553 (935)
T COG0178         475 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIR-AADHII  553 (935)
T ss_pred             ccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHh-hcCEEE
Confidence            57899999999999999999998774  38999999999998887777766654   5789999999998886 599999


Q ss_pred             EEeC------CeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCC
Q psy2684          77 HLDM------KKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDD  150 (356)
Q Consensus        77 ~l~~------g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (356)
                      .|-.      |.|+ |.|+++++++...    .+.-.|                           +         .... 
T Consensus       554 DiGPgAG~~GGeIv-~~Gtp~~i~~~~~----SlTG~Y---------------------------L---------sg~~-  591 (935)
T COG0178         554 DIGPGAGEHGGEIV-AEGTPEELLANPE----SLTGQY---------------------------L---------SGKK-  591 (935)
T ss_pred             eeCCCCCcCCCEEE-EccCHHHHHhCCc----chhhHh---------------------------h---------cCCc-
Confidence            9953      4444 6898876654210    010000                           0         0000 


Q ss_pred             CCchhhhcCCcceeeEEEecCCCCC-CCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhh
Q psy2684         151 DEPKELLEKPREYIVKFRFPNPPYL-PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLN  224 (356)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~  224 (356)
                                     ....|..+.. ....|++++.+.   +   =|+|++.+|+-|-+++|.|-||||||||++
T Consensus       592 ---------------~i~vP~~rr~~~~~~L~l~gA~~---n---NLkni~v~iPLg~~t~VTGVSGSGKSTLIn  645 (935)
T COG0178         592 ---------------TIEVPKKRRAPNGKWLELKGARR---N---NLKNIDVEIPLGVFTCVTGVSGSGKSTLIN  645 (935)
T ss_pred             ---------------ccCCcccccCCCCCeEEEecccc---c---CcccceeecccccEEEEEecCCCCHHHhHH
Confidence                           0001111111 122688887763   1   389999999999999999999999999994

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.90  E-value=4.9e-24  Score=193.29  Aligned_cols=141  Identities=30%  Similarity=0.390  Sum_probs=101.8

Q ss_pred             EEEecceeeeCC--CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         180 LGLHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       180 l~~~~l~~~~~~--~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      ++++|+++.|++  +.++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...          
T Consensus         1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~----------   70 (238)
T cd03249           1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDL----------   70 (238)
T ss_pred             CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhc----------
Confidence            468999999953  24699999999999999999999999999999999999999999999998764200          


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHhhc---------
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMF---------  327 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~L~~~---------  327 (356)
                                        ...    ..+..++|++|++.  +++ .|+.+++.... ......+...+..+         
T Consensus        71 ------------------~~~----~~~~~i~~~~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  125 (238)
T cd03249          71 ------------------NLR----WLRSQIGLVSQEPV--LFD-GTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSL  125 (238)
T ss_pred             ------------------CHH----HHHhhEEEECCchh--hhh-hhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhh
Confidence                              000    01235999999863  454 58888875321 12222233333322         


Q ss_pred             --CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         328 --GLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       328 --~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                        ++..... +++.+|||||||||+||++++
T Consensus       126 ~~~~~~~~~-~~~~~LS~G~~qrv~la~al~  155 (238)
T cd03249         126 PDGYDTLVG-ERGSQLSGGQKQRIAIARALL  155 (238)
T ss_pred             ccccceeec-cCCccCCHHHHHHHHHHHHHh
Confidence              3333333 356899999999999999874

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.90  E-value=9.3e-24  Score=183.71  Aligned_cols=118  Identities=25%  Similarity=0.313  Sum_probs=94.6

Q ss_pred             CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684         177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG  256 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG  256 (356)
                      +++++++|+++.|     +++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++....        
T Consensus         2 ~~~l~~~~l~~~~-----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--------   68 (182)
T cd03215           2 EPVLEVRGLSVKG-----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRS--------   68 (182)
T ss_pred             CcEEEEeccEEEe-----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccC--------
Confidence            3579999999988     899999999999999999999999999999999999999999999987653100        


Q ss_pred             CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcC-CCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCcccc
Q psy2684         257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSG-EHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHT  335 (356)
Q Consensus       257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~-~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~~  335 (356)
                                        +     ....+.+++|++|++. ..+++..|+.+++....                      
T Consensus        69 ------------------~-----~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~----------------------  103 (182)
T cd03215          69 ------------------P-----RDAIRAGIAYVPEDRKREGLVLDLSVAENIALSS----------------------  103 (182)
T ss_pred             ------------------H-----HHHHhCCeEEecCCcccCcccCCCcHHHHHHHHh----------------------
Confidence                              0     0011346999999863 24667788888763210                      


Q ss_pred             CCCCCCChHHHHHHHHHHHcC
Q psy2684         336 IPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       336 ~~~~~LSGGqkqRvalA~~~l  356 (356)
                          .|||||||||+||++++
T Consensus       104 ----~LS~G~~qrl~la~al~  120 (182)
T cd03215         104 ----LLSGGNQQKVVLARWLA  120 (182)
T ss_pred             ----hcCHHHHHHHHHHHHHc
Confidence                09999999999999974

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.90  E-value=4.2e-24  Score=221.85  Aligned_cols=143  Identities=32%  Similarity=0.432  Sum_probs=112.3

Q ss_pred             cEEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         179 VLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       179 ~l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      -++++|++|+|+++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++..-.         
T Consensus       463 ~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~---------  533 (694)
T TIGR03375       463 EIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQID---------  533 (694)
T ss_pred             eEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCC---------
Confidence            48999999999643 56999999999999999999999999999999999999999999999998864110         


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHhhcCCCCcccc-
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYAHT-  335 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~L~~~~l~~~~~~-  335 (356)
                                             ....+..++|++|++.  +|. .|+.|++.... ..+.+++.+.++..++.+.... 
T Consensus       534 -----------------------~~~lr~~i~~v~Q~~~--lf~-~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~l  587 (694)
T TIGR03375       534 -----------------------PADLRRNIGYVPQDPR--LFY-GTLRDNIALGAPYADDEEILRAAELAGVTEFVRRH  587 (694)
T ss_pred             -----------------------HHHHHhccEEECCChh--hhh-hhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhC
Confidence                                   0012457999999973  554 59999986543 3567777777777765432211 


Q ss_pred             ---------CCCCCCChHHHHHHHHHHHcC
Q psy2684         336 ---------IPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       336 ---------~~~~~LSGGqkqRvalA~~~l  356 (356)
                               .....||||||||++|||+++
T Consensus       588 p~gl~T~i~e~G~~LSgGQrQRlalARall  617 (694)
T TIGR03375       588 PDGLDMQIGERGRSLSGGQRQAVALARALL  617 (694)
T ss_pred             cccccceecCCCCCCCHHHHHHHHHHHHHh
Confidence                     123579999999999999975

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=7.6e-24  Score=193.57  Aligned_cols=143  Identities=24%  Similarity=0.307  Sum_probs=106.8

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc-----cCCCceeEeeeccccCcCCeeee
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGKVLLEKVNFGLDMESRVAL  254 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~-----p~~G~i~~~g~~~~~~~~~~ial  254 (356)
                      -+++|+++.| +++.+++++||+|.+|++++|+|+||||||||+++|+|+++     |++|+|.++|.++....      
T Consensus         6 ~~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~------   78 (251)
T PRK14244          6 ASVKNLNLWY-GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVD------   78 (251)
T ss_pred             EEeeeEEEEE-CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcc------
Confidence            3689999999 45679999999999999999999999999999999999986     47999999987642100      


Q ss_pred             ecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC--C----HHHHHHHHh
Q psy2684         255 VGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL--P----YEKSRRQLG  325 (356)
Q Consensus       255 vG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~--~----~~~~~~~L~  325 (356)
                                             .. ....+..++|++|++.  +++. ++.+++...   .+.  .    ...+.++++
T Consensus        79 -----------------------~~-~~~~~~~i~~v~q~~~--~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~  131 (251)
T PRK14244         79 -----------------------TN-VVLLRAKVGMVFQKPN--PFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLT  131 (251)
T ss_pred             -----------------------cc-hHHHhhhEEEEecCcc--cccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence                                   00 0011346999999863  5554 888876432   121  1    123567789


Q ss_pred             hcCCCCc---cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         326 MFGLPSY---AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       326 ~~~l~~~---~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .+|+.+.   ...+++..|||||||||+||++++
T Consensus       132 ~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~  165 (251)
T PRK14244        132 SVGLWEELGDRLKDSAFELSGGQQQRLCIARAIA  165 (251)
T ss_pred             HcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHh
Confidence            9998642   223467899999999999999974

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=1.1e-23  Score=193.05  Aligned_cols=151  Identities=21%  Similarity=0.270  Sum_probs=111.7

Q ss_pred             CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684         177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG  256 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG  256 (356)
                      .++++++|+++.| +++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.-..         -|
T Consensus         8 ~~~i~~~~~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~---------~g   77 (257)
T PRK14246          8 EDVFNISRLYLYI-NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLY---------FG   77 (257)
T ss_pred             hhheeeeeEEEec-CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEE---------CC
Confidence            4689999999999 5678999999999999999999999999999999999999999999888763210         01


Q ss_pred             CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC-CH----HHHHHHHhhcC
Q psy2684         257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-PY----EKSRRQLGMFG  328 (356)
Q Consensus       257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~-~~----~~~~~~L~~~~  328 (356)
                      .+-                .... ....+..++|++|++.  +++..|+.+++...   .+. ..    ..+.++++.++
T Consensus        78 ~~~----------------~~~~-~~~~~~~i~~~~q~~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (257)
T PRK14246         78 KDI----------------FQID-AIKLRKEVGMVFQQPN--PFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVG  138 (257)
T ss_pred             ccc----------------ccCC-HHHHhcceEEEccCCc--cCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence            100                0000 0011346999999873  67778998887532   121 22    23567788899


Q ss_pred             CCC---ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         329 LPS---YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       329 l~~---~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +..   .....++..||||||||++||++++
T Consensus       139 l~~~~~~~~~~~~~~LS~G~~qrl~laral~  169 (257)
T PRK14246        139 LWKEVYDRLNSPASQLSGGQQQRLTIARALA  169 (257)
T ss_pred             CCccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence            853   1223467899999999999999974

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.90  E-value=6.5e-24  Score=184.05  Aligned_cols=116  Identities=38%  Similarity=0.507  Sum_probs=92.7

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG  259 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG  259 (356)
                      ++++|+++.| +++++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++....           
T Consensus         1 i~~~~l~~~~-~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-----------   68 (178)
T cd03229           1 LELKNVSKRY-GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLE-----------   68 (178)
T ss_pred             CEEEEEEEEE-CCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccc-----------
Confidence            4689999999 4567999999999999999999999999999999999999999999999987652100           


Q ss_pred             CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCccccCCCC
Q psy2684         260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIR  339 (356)
Q Consensus       260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~  339 (356)
                                     +   . ....+..++|++|++.  +++..|+.+++...                           
T Consensus        69 ---------------~---~-~~~~~~~i~~~~q~~~--~~~~~t~~~~l~~~---------------------------  100 (178)
T cd03229          69 ---------------D---E-LPPLRRRIGMVFQDFA--LFPHLTVLENIALG---------------------------  100 (178)
T ss_pred             ---------------h---h-HHHHhhcEEEEecCCc--cCCCCCHHHheeec---------------------------
Confidence                           0   0 0011346999999873  56677777764210                           


Q ss_pred             CCChHHHHHHHHHHHcC
Q psy2684         340 DLSGGQKARVALAELTL  356 (356)
Q Consensus       340 ~LSGGqkqRvalA~~~l  356 (356)
                       ||||||||++||++++
T Consensus       101 -lS~G~~qr~~la~al~  116 (178)
T cd03229         101 -LSGGQQQRVALARALA  116 (178)
T ss_pred             -CCHHHHHHHHHHHHHH
Confidence             9999999999999974

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.90  E-value=1.8e-23  Score=182.65  Aligned_cols=92  Identities=35%  Similarity=0.466  Sum_probs=81.0

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++.+++||||+++|++||||++.+|++|++||||++|||.+...+.+++++    ++.|+|+||||++.+..+|||+++
T Consensus       139 ~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~  218 (263)
T COG1127         139 ADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAV  218 (263)
T ss_pred             hhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEE
Confidence            3578999999999999999999999999999999999999987665555443    578999999999999999999999


Q ss_pred             EeCCeEeEecCCHHHHH
Q psy2684          78 LDMKKLFYYKGNFTLFK   94 (356)
Q Consensus        78 l~~g~~~~~~g~~~~~~   94 (356)
                      |.+|++.. .|+.++..
T Consensus       219 L~~gkv~~-~Gt~~el~  234 (263)
T COG1127         219 LADGKVIA-EGTPEELL  234 (263)
T ss_pred             EeCCEEEE-eCCHHHHH
Confidence            99999985 58776554

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=2.1e-23  Score=213.73  Aligned_cols=93  Identities=37%  Similarity=0.583  Sum_probs=90.0

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEEeCCe
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMKK   82 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l~~g~   82 (356)
                      ++++.+|||||||||+||++|+.+|+||||||||||||+.++.+|.++|.++++|||+||||++++..+||+|++|++|+
T Consensus       425 ~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~~~d~i~~l~~G~  504 (638)
T PRK10636        425 TEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGK  504 (638)
T ss_pred             cCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHhCCEEEEEECCE
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeEecCCHHHHHH
Q psy2684          83 LFYYKGNFTLFKK   95 (356)
Q Consensus        83 ~~~~~g~~~~~~~   95 (356)
                      ++.|.|+|++|.+
T Consensus       505 i~~~~g~~~~~~~  517 (638)
T PRK10636        505 VEPFDGDLEDYQQ  517 (638)
T ss_pred             EEEcCCCHHHHHH
Confidence            9989999999954

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.90  E-value=1.6e-23  Score=188.66  Aligned_cols=93  Identities=31%  Similarity=0.462  Sum_probs=84.0

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH----HHHHHHHHhcCcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAV----IWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~----~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      -++++.+|||||+|||+|||||+.+|++||||||++.||..-+    .||.++..+++.|+|+||||.+++.++||||++
T Consensus       131 a~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvv  210 (345)
T COG1118         131 ADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVV  210 (345)
T ss_pred             hhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEE
Confidence            4789999999999999999999999999999999999999875    566667777899999999999999999999999


Q ss_pred             EeCCeEeEecCCHHHHH
Q psy2684          78 LDMKKLFYYKGNFTLFK   94 (356)
Q Consensus        78 l~~g~~~~~~g~~~~~~   94 (356)
                      |++|+|...+.+.+.|.
T Consensus       211 l~~G~Ieqvg~p~ev~~  227 (345)
T COG1118         211 LNQGRIEQVGPPDEVYD  227 (345)
T ss_pred             ecCCeeeeeCCHHHHhc
Confidence            99999998766666554

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.90  E-value=2.1e-23  Score=213.98  Aligned_cols=93  Identities=35%  Similarity=0.568  Sum_probs=89.9

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEEe-CC
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLD-MK   81 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l~-~g   81 (356)
                      ++++.+||||||||++||++|+.+|+||||||||||||+.++++|.++++++++|||+||||++++..+||+|++|+ +|
T Consensus       435 ~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~g  514 (635)
T PRK11147        435 MTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNG  514 (635)
T ss_pred             hChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEEEEEeCCC
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999998 89


Q ss_pred             eEeEecCCHHHHHH
Q psy2684          82 KLFYYKGNFTLFKK   95 (356)
Q Consensus        82 ~~~~~~g~~~~~~~   95 (356)
                      ++..|.|+|++|.+
T Consensus       515 ~i~~~~g~y~~y~~  528 (635)
T PRK11147        515 KIGRYVGGYHDARQ  528 (635)
T ss_pred             eEEEccCCHHHHHH
Confidence            99999999999964

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=2e-23  Score=191.81  Aligned_cols=145  Identities=19%  Similarity=0.162  Sum_probs=110.8

Q ss_pred             CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc-----CCCceeEeeeccccCcCCee
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGKVLLEKVNFGLDMESRV  252 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p-----~~G~i~~~g~~~~~~~~~~i  252 (356)
                      +.+.++++++.| ++..+++++||+|++|++++|+|+||||||||+++|+|+++|     ++|+|.++|.++...     
T Consensus         7 ~~~~~~~~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~-----   80 (261)
T PRK14263          7 IVMDCKLDKIFY-GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGK-----   80 (261)
T ss_pred             ceEEEEeEEEEe-CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecccc-----
Confidence            568999999999 567899999999999999999999999999999999999987     799999998765200     


Q ss_pred             eeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCC---HHHHHHHHhh
Q psy2684         253 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLP---YEKSRRQLGM  326 (356)
Q Consensus       253 alvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~---~~~~~~~L~~  326 (356)
                                           ..   . ....+..++|++|++.  ++ ..|+.+++....   ...   ...+.++++.
T Consensus        81 ---------------------~~---~-~~~~~~~i~~v~q~~~--~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~  132 (261)
T PRK14263         81 ---------------------GV---D-PVVVRRYIGMVFQQPN--PF-SMSIFDNVAFGLRLNRYKGDLGDRVKHALQG  132 (261)
T ss_pred             ---------------------cc---c-hHhhhhceEEEecCCc--cc-cccHHHHHHHHHhhcCchHHHHHHHHHHHHH
Confidence                                 00   0 0011346999999973  45 588988875321   111   2356778999


Q ss_pred             cCCCCc---cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         327 FGLPSY---AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       327 ~~l~~~---~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +++.+.   ....++.+|||||+||++|||+++
T Consensus       133 ~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~  165 (261)
T PRK14263        133 AALWDEVKDKLKVSGLSLSGGQQQRLCIARAIA  165 (261)
T ss_pred             cCCchhhhhhhhCCcccCCHHHHHHHHHHHHHH
Confidence            998542   123467899999999999999974

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.89  E-value=7.5e-24  Score=216.10  Aligned_cols=142  Identities=30%  Similarity=0.438  Sum_probs=110.8

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      .++++|+++.|++++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++..-.          
T Consensus       334 ~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~----------  403 (588)
T PRK13657        334 AVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVT----------  403 (588)
T ss_pred             eEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCC----------
Confidence            5899999999965467999999999999999999999999999999999999999999999998763100          


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHhhcCCCCc-----
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSY-----  332 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-~~~~~~~~~~~L~~~~l~~~-----  332 (356)
                                            ....+.+|+|++|++.  +| +.|+.+++... .+.++++++..++.+++.+.     
T Consensus       404 ----------------------~~~~r~~i~~v~Q~~~--lf-~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp  458 (588)
T PRK13657        404 ----------------------RASLRRNIAVVFQDAG--LF-NRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKP  458 (588)
T ss_pred             ----------------------HHHHHhheEEEecCcc--cc-cccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCc
Confidence                                  0112357999999973  55 46899998654 24556677777666664321     


Q ss_pred             ------cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         333 ------AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       333 ------~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                            ... ....||||||||++|||+++
T Consensus       459 ~gldt~i~~-~g~~LSgGq~QRialARall  487 (588)
T PRK13657        459 DGYDTVVGE-RGRQLSGGERQRLAIARALL  487 (588)
T ss_pred             ccccchhcC-CCCCCCHHHHHHHHHHHHHh
Confidence                  111 22469999999999999975

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=3.6e-24  Score=205.48  Aligned_cols=143  Identities=34%  Similarity=0.479  Sum_probs=115.8

Q ss_pred             cEEEecceeeeCCCc-cccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         179 VLGLHDVTFGYPGGK-VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~-~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      .++++|++|.|++.. ++|+|+||++.+||+++|+|+|||||||++.++.|.+.|++|+|.++|.++..-+         
T Consensus       336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~---------  406 (573)
T COG4987         336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLD---------  406 (573)
T ss_pred             eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCC---------
Confidence            799999999997665 6999999999999999999999999999999999999999999999997763110         


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHhhcCCCCccccC
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAHTI  336 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-~~~~~~~~~~~L~~~~l~~~~~~~  336 (356)
                                         +    ...+..++++.|.++  +| +.|+.+|+.-. .+.+.++.++.|+.+|+.+.....
T Consensus       407 -------------------~----~~~~e~i~vl~Qr~h--lF-~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~  460 (573)
T COG4987         407 -------------------E----QALRETISVLTQRVH--LF-SGTLRDNLRLANPDASDEELWAALQQVGLEKLLESA  460 (573)
T ss_pred             -------------------h----hhHHHHHhhhccchH--HH-HHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhC
Confidence                               0    001345788999874  55 45788887543 456788899999999987654433


Q ss_pred             C----------CCCCChHHHHHHHHHHHcC
Q psy2684         337 P----------IRDLSGGQKARVALAELTL  356 (356)
Q Consensus       337 ~----------~~~LSGGqkqRvalA~~~l  356 (356)
                      |          -..|||||+||++|||++|
T Consensus       461 p~gl~t~lge~G~~LSGGE~rRLAlAR~LL  490 (573)
T COG4987         461 PDGLNTWLGEGGRRLSGGERRRLALARALL  490 (573)
T ss_pred             hhhhhchhccCCCcCCchHHHHHHHHHHHH
Confidence            1          3579999999999999985

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.89  E-value=2.5e-23  Score=187.02  Aligned_cols=88  Identities=35%  Similarity=0.460  Sum_probs=80.7

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .+|++.+|||||||||.||+||+++|++|||||||++||...+..+.++++++    +.|||+|.||++++.++||+++.
T Consensus       132 a~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~  211 (258)
T COG1120         132 ADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLIL  211 (258)
T ss_pred             hcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEE
Confidence            47899999999999999999999999999999999999999988877777654    58999999999999999999999


Q ss_pred             EeCCeEeEecCC
Q psy2684          78 LDMKKLFYYKGN   89 (356)
Q Consensus        78 l~~g~~~~~~g~   89 (356)
                      |.+|+++..+.+
T Consensus       212 lk~G~i~a~G~p  223 (258)
T COG1120         212 LKDGKIVAQGTP  223 (258)
T ss_pred             EECCeEEeecCc
Confidence            999999976554

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.89  E-value=2e-23  Score=183.49  Aligned_cols=118  Identities=35%  Similarity=0.423  Sum_probs=96.4

Q ss_pred             cEEEecceeeeCC-----CccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccc--ccCCCceeEeeeccccCcCCe
Q psy2684         179 VLGLHDVTFGYPG-----GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL--TPNKGKVLLEKVNFGLDMESR  251 (356)
Q Consensus       179 ~l~~~~l~~~~~~-----~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~--~p~~G~i~~~g~~~~~~~~~~  251 (356)
                      .++++|+++.|++     +.++++++||+|.+|++++|+||||||||||+++|+|++  +|++|+|.++|.++..     
T Consensus         3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~-----   77 (194)
T cd03213           3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK-----   77 (194)
T ss_pred             EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch-----
Confidence            4789999999954     267999999999999999999999999999999999999  9999999999876520     


Q ss_pred             eeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCC
Q psy2684         252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPS  331 (356)
Q Consensus       252 ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~  331 (356)
                                                    ...+.+++|++|++  .+++..|+.+++....            .     
T Consensus        78 ------------------------------~~~~~~i~~~~q~~--~~~~~~t~~~~i~~~~------------~-----  108 (194)
T cd03213          78 ------------------------------RSFRKIIGYVPQDD--ILHPTLTVRETLMFAA------------K-----  108 (194)
T ss_pred             ------------------------------HhhhheEEEccCcc--cCCCCCcHHHHHHHHH------------H-----
Confidence                                          01134699999986  4677788888764210            0     


Q ss_pred             ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         332 YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       332 ~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                            ...|||||+|||+||++++
T Consensus       109 ------~~~LS~G~~qrv~laral~  127 (194)
T cd03213         109 ------LRGLSGGERKRVSIALELV  127 (194)
T ss_pred             ------hccCCHHHHHHHHHHHHHH
Confidence                  0179999999999999974

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.89  E-value=2.2e-23  Score=209.66  Aligned_cols=167  Identities=24%  Similarity=0.369  Sum_probs=112.0

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccc--ccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL--TPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~--~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      ++++|+++.| +++.+|+++||+|.+|++++|+||||||||||+++|+|++  +|++|+|.+++....     .++++-+
T Consensus         1 l~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~-----~~~~~~~   74 (520)
T TIGR03269         1 IEVKNLTKKF-DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCE-----KCGYVER   74 (520)
T ss_pred             CEEEEEEEEE-CCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccc-----ccccccc
Confidence            4789999999 5667999999999999999999999999999999999997  799999999742110     0111000


Q ss_pred             ---CC-----CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHH
Q psy2684         258 ---NG-----IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRR  322 (356)
Q Consensus       258 ---nG-----~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~  322 (356)
                         +|     .|++.....+ ....... ......+..++|++|++. .+++..|+.+++...   .+.+.    .++.+
T Consensus        75 ~~~~g~~~~~~g~~~~~~~~-~~~~~~~-~~~~~~~~~i~~v~q~~~-~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~  151 (520)
T TIGR03269        75 PSKVGEPCPVCGGTLEPEEV-DFWNLSD-KLRRRIRKRIAIMLQRTF-ALYGDDTVLDNVLEALEEIGYEGKEAVGRAVD  151 (520)
T ss_pred             ccccccccccccccccccch-hhhccCH-HHHHHhhhcEEEEecccc-ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence               00     0221000000 0000000 000011346999999742 467778998887532   22322    34667


Q ss_pred             HHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         323 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       323 ~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +++.+|+.+... +++.+|||||||||+||++++
T Consensus       152 ~l~~~gl~~~~~-~~~~~LSgGq~qrv~iA~al~  184 (520)
T TIGR03269       152 LIEMVQLSHRIT-HIARDLSGGEKQRVVLARQLA  184 (520)
T ss_pred             HHHHcCChhhhh-cCcccCCHHHHHHHHHHHHHh
Confidence            899999987655 467999999999999999974

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=3.4e-23  Score=195.81  Aligned_cols=147  Identities=23%  Similarity=0.264  Sum_probs=110.4

Q ss_pred             CCCcEEEecceeeeCC-CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc-----cCCCceeEeeeccccCcC
Q psy2684         176 PPPVLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGKVLLEKVNFGLDME  249 (356)
Q Consensus       176 ~~~~l~~~~l~~~~~~-~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~-----p~~G~i~~~g~~~~~~~~  249 (356)
                      ...+++++|+++.|.+ ...+|+++||+|.+|++++|+|+||||||||+++|+|+..     |++|+|.++|.++.... 
T Consensus        77 ~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~-  155 (329)
T PRK14257         77 HANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK-  155 (329)
T ss_pred             cCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc-
Confidence            3458999999999953 3469999999999999999999999999999999999986     57999999998763100 


Q ss_pred             CeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh--c-CCCHH-----HHH
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL--F-NLPYE-----KSR  321 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~--~-~~~~~-----~~~  321 (356)
                                                  .. ....+.+++|++|++.  ++ ..|+.+++...  . +....     .+.
T Consensus       156 ----------------------------~~-~~~lr~~i~~v~q~~~--~~-~~ti~eNi~~~~~~~~~~~~~~~~~~~~  203 (329)
T PRK14257        156 ----------------------------IS-SLELRTRIGMVFQKPT--PF-EMSIFDNVAYGPRNNGINDRKILEKIVE  203 (329)
T ss_pred             ----------------------------cc-hHhhhccEEEEecCCc--cC-CCcHHHHHHhHHHhcCCChHHHHHHHHH
Confidence                                        00 0012357999999974  44 47999988632  1 22222     245


Q ss_pred             HHHhhcCCCC----ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         322 RQLGMFGLPS----YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       322 ~~L~~~~l~~----~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ..++.+++..    ... .++.+|||||||||+|||+++
T Consensus       204 ~~l~~~~L~~~l~~~~~-~~~~~LSgGqkqRl~LARAl~  241 (329)
T PRK14257        204 KSLKSAALWDEVKDDLD-KAGNALSGGQQQRLCIARAIA  241 (329)
T ss_pred             HHHHHcCCcchhhhhhh-CCcccCCHHHHHHHHHHHHHH
Confidence            6788887742    233 467899999999999999974

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.89  E-value=8.1e-24  Score=215.26  Aligned_cols=143  Identities=29%  Similarity=0.390  Sum_probs=112.0

Q ss_pred             cEEEecceeeeCC-CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         179 VLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       179 ~l~~~~l~~~~~~-~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      -++++|++++|++ ++++++++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++..-.         
T Consensus       330 ~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~---------  400 (571)
T TIGR02203       330 DVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYT---------  400 (571)
T ss_pred             eEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcC---------
Confidence            4899999999964 356999999999999999999999999999999999999999999999998763100         


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc--CCCHHHHHHHHhhcCCCCcccc
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF--NLPYEKSRRQLGMFGLPSYAHT  335 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~--~~~~~~~~~~L~~~~l~~~~~~  335 (356)
                                             ....+..++|++|++.  +| +.|+.+++....  ..+.+++.+.++.+|+.+...+
T Consensus       401 -----------------------~~~~~~~i~~v~Q~~~--lf-~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~  454 (571)
T TIGR02203       401 -----------------------LASLRRQVALVSQDVV--LF-NDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDK  454 (571)
T ss_pred             -----------------------HHHHHhhceEEccCcc--cc-cccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHh
Confidence                                   0012356999999973  44 568999986442  4667778888877776432111


Q ss_pred             ------C----CCCCCChHHHHHHHHHHHcC
Q psy2684         336 ------I----PIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       336 ------~----~~~~LSGGqkqRvalA~~~l  356 (356)
                            .    .-..||||||||++|||+++
T Consensus       455 lp~gldt~i~~~g~~LSgGqrQRiaLARall  485 (571)
T TIGR02203       455 LPLGLDTPIGENGVLLSGGQRQRLAIARALL  485 (571)
T ss_pred             CcCcccceecCCCCcCCHHHHHHHHHHHHHh
Confidence                  1    12469999999999999974

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.89  E-value=2.7e-24  Score=186.74  Aligned_cols=113  Identities=34%  Similarity=0.617  Sum_probs=90.0

Q ss_pred             EEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCC
Q psy2684         181 GLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGI  260 (356)
Q Consensus       181 ~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~  260 (356)
                      +++|+++.| ++..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++....            
T Consensus         1 ~~~~l~~~~-~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~------------   67 (180)
T cd03214           1 EVENLSVGY-GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLS------------   67 (180)
T ss_pred             CeeEEEEEE-CCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCC------------
Confidence            368999999 4567999999999999999999999999999999999999999999999987652100            


Q ss_pred             chhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCccccCCCCC
Q psy2684         261 GKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRD  340 (356)
Q Consensus       261 GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~  340 (356)
                                         . ...+..++|++|                             +++.+|+..... +++.+
T Consensus        68 -------------------~-~~~~~~i~~~~q-----------------------------~l~~~gl~~~~~-~~~~~   97 (180)
T cd03214          68 -------------------P-KELARKIAYVPQ-----------------------------ALELLGLAHLAD-RPFNE   97 (180)
T ss_pred             -------------------H-HHHHHHHhHHHH-----------------------------HHHHcCCHhHhc-CCccc
Confidence                               0 000124666666                             566677765544 46799


Q ss_pred             CChHHHHHHHHHHHcC
Q psy2684         341 LSGGQKARVALAELTL  356 (356)
Q Consensus       341 LSGGqkqRvalA~~~l  356 (356)
                      ||||||||++||++++
T Consensus        98 LS~G~~qrl~laral~  113 (180)
T cd03214          98 LSGGERQRVLLARALA  113 (180)
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999999874

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.89  E-value=8.1e-24  Score=183.43  Aligned_cols=113  Identities=35%  Similarity=0.603  Sum_probs=91.0

Q ss_pred             EEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         180 LGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       180 l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      ++++|+++.|++. .++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..            
T Consensus         1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~------------   68 (178)
T cd03247           1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSD------------   68 (178)
T ss_pred             CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHH------------
Confidence            4689999999543 369999999999999999999999999999999999999999999998865420            


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCccccCCC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPI  338 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~  338 (356)
                            .               ....+..++|++|++.  +++ .|+.+++                            +
T Consensus        69 ------~---------------~~~~~~~i~~~~q~~~--~~~-~tv~~~i----------------------------~   96 (178)
T cd03247          69 ------L---------------EKALSSLISVLNQRPY--LFD-TTLRNNL----------------------------G   96 (178)
T ss_pred             ------H---------------HHHHHhhEEEEccCCe--eec-ccHHHhh----------------------------c
Confidence                  0               0001246899999863  443 5666653                            4


Q ss_pred             CCCChHHHHHHHHHHHcC
Q psy2684         339 RDLSGGQKARVALAELTL  356 (356)
Q Consensus       339 ~~LSGGqkqRvalA~~~l  356 (356)
                      ..|||||+||++||++++
T Consensus        97 ~~LS~G~~qrv~laral~  114 (178)
T cd03247          97 RRFSGGERQRLALARILL  114 (178)
T ss_pred             ccCCHHHHHHHHHHHHHh
Confidence            789999999999999974

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.89  E-value=3.3e-23  Score=186.93  Aligned_cols=121  Identities=31%  Similarity=0.378  Sum_probs=97.0

Q ss_pred             cccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCC
Q psy2684         196 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP  275 (356)
Q Consensus       196 l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~  275 (356)
                      ++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++..                             
T Consensus         1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-----------------------------   51 (230)
T TIGR01184         1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITE-----------------------------   51 (230)
T ss_pred             CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCC-----------------------------
Confidence            578999999999999999999999999999999999999999999876420                             


Q ss_pred             CcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-----CCCH----HHHHHHHhhcCCCCccccCCCCCCChHHH
Q psy2684         276 NKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-----NLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQK  346 (356)
Q Consensus       276 ~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-----~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSGGqk  346 (356)
                              .....+|++|++  .+++..|+.+++....     ....    ..+.++++.+|+..... +++.+||||||
T Consensus        52 --------~~~~~~~v~q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~  120 (230)
T TIGR01184        52 --------PGPDRMVVFQNY--SLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAAD-KRPGQLSGGMK  120 (230)
T ss_pred             --------CChhheEEecCc--ccCCCCCHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHc-CChhhCCHHHH
Confidence                    001247999986  4777889999875421     2222    23667899999986554 46799999999


Q ss_pred             HHHHHHHHcC
Q psy2684         347 ARVALAELTL  356 (356)
Q Consensus       347 qRvalA~~~l  356 (356)
                      |||+||++++
T Consensus       121 qrv~la~al~  130 (230)
T TIGR01184       121 QRVAIARALS  130 (230)
T ss_pred             HHHHHHHHHH
Confidence            9999999974

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.89  E-value=1.5e-23  Score=192.31  Aligned_cols=144  Identities=19%  Similarity=0.208  Sum_probs=104.1

Q ss_pred             CCcEEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684         177 PPVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV  255 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv  255 (356)
                      ...++++|+++.|++. ..+++++||+|.+|++++|+|+||||||||+++|+|+++|++|+|+++|.++....       
T Consensus        17 ~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~-------   89 (257)
T cd03288          17 GGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLP-------   89 (257)
T ss_pred             CceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCC-------
Confidence            3468999999999532 46999999999999999999999999999999999999999999999987652100       


Q ss_pred             cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHH---------Hhh
Q psy2684         256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ---------LGM  326 (356)
Q Consensus       256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~---------L~~  326 (356)
                                               ....+..++|++|++.  +++ .|+.+++..........+.+.         ++.
T Consensus        90 -------------------------~~~~~~~i~~v~q~~~--l~~-~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~  141 (257)
T cd03288          90 -------------------------LHTLRSRLSIILQDPI--LFS-GSIRFNLDPECKCTDDRLWEALEIAQLKNMVKS  141 (257)
T ss_pred             -------------------------HHHHhhhEEEECCCCc--ccc-cHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhh
Confidence                                     0011346899999873  554 477776532111112223333         333


Q ss_pred             c--CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         327 F--GLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       327 ~--~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +  ++...... ++..|||||+||++||++++
T Consensus       142 ~~~~l~~~~~~-~~~~LS~G~~qrl~laral~  172 (257)
T cd03288         142 LPGGLDAVVTE-GGENFSVGQRQLFCLARAFV  172 (257)
T ss_pred             cccccCcEecc-CCCcCCHHHHHHHHHHHHHh
Confidence            3  44433333 56899999999999999974

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=4.3e-23  Score=190.12  Aligned_cols=147  Identities=26%  Similarity=0.315  Sum_probs=108.4

Q ss_pred             CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc-----CCCceeEeeeccccCcCCe
Q psy2684         177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGKVLLEKVNFGLDMESR  251 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p-----~~G~i~~~g~~~~~~~~~~  251 (356)
                      .++++++|+++.| +++.+|+++||+|.+||+++|+|+||||||||+++|+|+++|     ++|+|.++|.++...    
T Consensus        14 ~~~l~~~~l~~~~-~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~----   88 (265)
T PRK14252         14 QQKSEVNKLNFYY-GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNIL----   88 (265)
T ss_pred             CceEEEEEEEEEE-CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccc----
Confidence            4579999999999 456799999999999999999999999999999999999985     799999987553210    


Q ss_pred             eeeecCCCCchhhHHHHHhCCCCCCccee-EeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC-----HHHHHH
Q psy2684         252 VALVGPNGIGKSTFLNLLKGELTPNKGEL-RKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP-----YEKSRR  322 (356)
Q Consensus       252 ialvG~nG~GKsTll~~l~g~~~~~~g~~-~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~-----~~~~~~  322 (356)
                          +                     ... ....+..++|++|++.  +++. |+.+++...   .+..     .+.+.+
T Consensus        89 ----~---------------------~~~~~~~~~~~i~~~~q~~~--~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~  140 (265)
T PRK14252         89 ----S---------------------PEVDPIEVRMRISMVFQKPN--PFPK-SIFENVAYGLRIRGVKRRSILEERVEN  140 (265)
T ss_pred             ----c---------------------cccCHHHHhccEEEEccCCc--CCcc-hHHHHHHhHHHHcCCChHHHHHHHHHH
Confidence                0                     000 0012346999999863  5554 888887532   1221     234556


Q ss_pred             HHhhcCCCC---ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         323 QLGMFGLPS---YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       323 ~L~~~~l~~---~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +++.+++..   ....+++.+|||||+|||+||++++
T Consensus       141 ~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~  177 (265)
T PRK14252        141 ALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALA  177 (265)
T ss_pred             HHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHH
Confidence            777777642   1223467899999999999999874

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.89  E-value=1.7e-23  Score=211.47  Aligned_cols=143  Identities=32%  Similarity=0.448  Sum_probs=108.6

Q ss_pred             CcEEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684         178 PVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG  256 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG  256 (356)
                      ..++++|+++.|+++ +++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...         
T Consensus       315 ~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~---------  385 (544)
T TIGR01842       315 GHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQW---------  385 (544)
T ss_pred             CeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhC---------
Confidence            358999999999643 5799999999999999999999999999999999999999999999998876310         


Q ss_pred             CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHhh---------
Q psy2684         257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGM---------  326 (356)
Q Consensus       257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~L~~---------  326 (356)
                                       .      ....+..++|++|++.  +++ .|+.+++.... ..+.+++.+.++.         
T Consensus       386 -----------------~------~~~~~~~i~~v~q~~~--lf~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~  439 (544)
T TIGR01842       386 -----------------D------RETFGKHIGYLPQDVE--LFP-GTVAENIARFGENADPEKIIEAAKLAGVHELILR  439 (544)
T ss_pred             -----------------C------HHHHhhheEEecCCcc--ccc-ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHh
Confidence                             0      0012357999999973  565 48999986332 2445555444443         


Q ss_pred             c--CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         327 F--GLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       327 ~--~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +  |+...... ....||||||||++|||+++
T Consensus       440 l~~gl~t~~~~-~g~~LSgGq~qrl~lARall  470 (544)
T TIGR01842       440 LPDGYDTVIGP-GGATLSGGQRQRIALARALY  470 (544)
T ss_pred             CccccccccCC-CcCCCCHHHHHHHHHHHHHh
Confidence            3  33333333 35789999999999999975

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.89  E-value=1.6e-23  Score=180.78  Aligned_cols=111  Identities=33%  Similarity=0.596  Sum_probs=89.9

Q ss_pred             EEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         180 LGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       180 l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      ++++|+++.|++. ..+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...           
T Consensus         1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-----------   69 (173)
T cd03246           1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQW-----------   69 (173)
T ss_pred             CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccC-----------
Confidence            4689999999532 4699999999999999999999999999999999999999999999998765210           


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCccccCCC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPI  338 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~  338 (356)
                                          . ....+.+++|++|++.  +++ .|+.+++                             
T Consensus        70 --------------------~-~~~~~~~i~~~~q~~~--~~~-~tv~~~l-----------------------------   96 (173)
T cd03246          70 --------------------D-PNELGDHVGYLPQDDE--LFS-GSIAENI-----------------------------   96 (173)
T ss_pred             --------------------C-HHHHHhheEEECCCCc--ccc-CcHHHHC-----------------------------
Confidence                                0 0001346899999873  554 3777653                             


Q ss_pred             CCCChHHHHHHHHHHHcC
Q psy2684         339 RDLSGGQKARVALAELTL  356 (356)
Q Consensus       339 ~~LSGGqkqRvalA~~~l  356 (356)
                        ||||||||++||++++
T Consensus        97 --LS~G~~qrv~la~al~  112 (173)
T cd03246          97 --LSGGQRQRLGLARALY  112 (173)
T ss_pred             --cCHHHHHHHHHHHHHh
Confidence              9999999999999974

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.89  E-value=3.1e-23  Score=187.14  Aligned_cols=128  Identities=27%  Similarity=0.253  Sum_probs=98.4

Q ss_pred             ccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc----CCCceeEeeeccccCcCCeeeeecCCCCchhhHHHHHh
Q psy2684         195 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP----NKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK  270 (356)
Q Consensus       195 ~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p----~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~  270 (356)
                      +++++||+|.+|++++|+||||||||||+++|+|+++|    ++|+|.++|.++..                        
T Consensus         1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~------------------------   56 (230)
T TIGR02770         1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLP------------------------   56 (230)
T ss_pred             CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechh------------------------
Confidence            47899999999999999999999999999999999999    89999999876520                        


Q ss_pred             CCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCCCC--ccccCCCCCC
Q psy2684         271 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPS--YAHTIPIRDL  341 (356)
Q Consensus       271 g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l~~--~~~~~~~~~L  341 (356)
                               . ...+..++|++|++...+++..|+.+++...   .+..    ...+.++++.+++..  ....+++.+|
T Consensus        57 ---------~-~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~L  126 (230)
T TIGR02770        57 ---------L-SIRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQL  126 (230)
T ss_pred             ---------h-hhhhheeEEEecCchhhcCcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhc
Confidence                     0 0112469999999743456677887765321   1211    234678899999973  2223477999


Q ss_pred             ChHHHHHHHHHHHcC
Q psy2684         342 SGGQKARVALAELTL  356 (356)
Q Consensus       342 SGGqkqRvalA~~~l  356 (356)
                      ||||||||+||++++
T Consensus       127 S~G~~qrv~laral~  141 (230)
T TIGR02770       127 SGGMLQRVMIALALL  141 (230)
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999999974

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.89  E-value=3.8e-23  Score=181.71  Aligned_cols=89  Identities=30%  Similarity=0.427  Sum_probs=81.1

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH----HhcCcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYL----QTWKKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l----~~~~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .+|++++|||||+|||-+||||+.+|++||+|||++.|||.++..|.+.+    ++++.|||+||||++++...+|||++
T Consensus       129 ~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~v  208 (309)
T COG1125         129 ADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAV  208 (309)
T ss_pred             hhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEE
Confidence            47999999999999999999999999999999999999999987765544    45789999999999999999999999


Q ss_pred             EeCCeEeEecCCH
Q psy2684          78 LDMKKLFYYKGNF   90 (356)
Q Consensus        78 l~~g~~~~~~g~~   90 (356)
                      |+.|+++.|+.+-
T Consensus       209 m~~G~i~Q~~~P~  221 (309)
T COG1125         209 MDAGEIVQYDTPD  221 (309)
T ss_pred             ecCCeEEEeCCHH
Confidence            9999999986543

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.89  E-value=1.6e-23  Score=211.78  Aligned_cols=140  Identities=24%  Similarity=0.236  Sum_probs=106.9

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      -++++|++++|+++.++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...           
T Consensus       322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~-----------  390 (547)
T PRK10522        322 TLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAE-----------  390 (547)
T ss_pred             eEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCC-----------
Confidence            589999999996555799999999999999999999999999999999999999999999999876310           


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCcccc--C
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHT--I  336 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~~--~  336 (356)
                                       .    ....+.+++|++|++.  +++ .|+.++   ....+.+++.+.++.+++......  .
T Consensus       391 -----------------~----~~~~~~~i~~v~q~~~--lf~-~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~~~~  443 (547)
T PRK10522        391 -----------------Q----PEDYRKLFSAVFTDFH--LFD-QLLGPE---GKPANPALVEKWLERLKMAHKLELEDG  443 (547)
T ss_pred             -----------------C----HHHHhhheEEEecChh--HHH-Hhhccc---cCchHHHHHHHHHHHcCCchhhhcccc
Confidence                             0    0011347999999973  443 234443   112345567788888888654321  0


Q ss_pred             C--CCCCChHHHHHHHHHHHcC
Q psy2684         337 P--IRDLSGGQKARVALAELTL  356 (356)
Q Consensus       337 ~--~~~LSGGqkqRvalA~~~l  356 (356)
                      .  -..||||||||++|||+++
T Consensus       444 ~~~G~~LSgGq~qRl~lARal~  465 (547)
T PRK10522        444 RISNLKLSKGQKKRLALLLALA  465 (547)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHh
Confidence            0  2489999999999999974

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.89  E-value=2.9e-23  Score=183.37  Aligned_cols=118  Identities=28%  Similarity=0.378  Sum_probs=92.2

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccc--cccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE--LTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl--~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      ++++|+++.|+ +..+++++||+|.+||+++|+|+||||||||+++|+|+  ++|++|+|.++|.++...          
T Consensus         1 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~----------   69 (200)
T cd03217           1 LEIKDLHVSVG-GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDL----------   69 (200)
T ss_pred             CeEEEEEEEeC-CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcC----------
Confidence            46899999994 56799999999999999999999999999999999999  589999999998765310          


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCccccCC
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIP  337 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~  337 (356)
                                           ......+..++|++|++.  +++..++.+++                         ...
T Consensus        70 ---------------------~~~~~~~~~i~~v~q~~~--~~~~~~~~~~l-------------------------~~~  101 (200)
T cd03217          70 ---------------------PPEERARLGIFLAFQYPP--EIPGVKNADFL-------------------------RYV  101 (200)
T ss_pred             ---------------------CHHHHhhCcEEEeecChh--hccCccHHHHH-------------------------hhc
Confidence                                 000001235999999863  55566655543                         112


Q ss_pred             CCCCChHHHHHHHHHHHcC
Q psy2684         338 IRDLSGGQKARVALAELTL  356 (356)
Q Consensus       338 ~~~LSGGqkqRvalA~~~l  356 (356)
                      ..+|||||+||++||++++
T Consensus       102 ~~~LS~G~~qrv~laral~  120 (200)
T cd03217         102 NEGFSGGEKKRNEILQLLL  120 (200)
T ss_pred             cccCCHHHHHHHHHHHHHh
Confidence            3689999999999999974

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.89  E-value=1.8e-23  Score=169.78  Aligned_cols=140  Identities=33%  Similarity=0.464  Sum_probs=114.0

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccC---CCceeEeeeccccCcCCeeeee
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN---KGKVLLEKVNFGLDMESRVALV  255 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~---~G~i~~~g~~~~~~~~~~ialv  255 (356)
                      ++.++|++.+. ++..+|.++||+|.+||++.|+||||||||||+.-+.|.+.++   +|++.++++++...        
T Consensus         2 ~l~l~nvsl~l-~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~l--------   72 (213)
T COG4136           2 MLCLKNVSLRL-PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDML--------   72 (213)
T ss_pred             ceeeeeeeecC-CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeecccc--------
Confidence            57899999888 5678999999999999999999999999999999999999874   79999988776311        


Q ss_pred             cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc--CCC----HHHHHHHHhhcCC
Q psy2684         256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF--NLP----YEKSRRQLGMFGL  329 (356)
Q Consensus       256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~--~~~----~~~~~~~L~~~~l  329 (356)
                                                ...++++|++||++  .+|+..++.+++....  .+.    ...+...|++.|+
T Consensus        73 --------------------------Pa~qRq~GiLFQD~--lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL  124 (213)
T COG4136          73 --------------------------PAAQRQIGILFQDA--LLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGL  124 (213)
T ss_pred             --------------------------chhhhheeeeeccc--ccccccccccceEEecCcccccHHHHhhHHHHHHHhcc
Confidence                                      11245799999996  5899999999874321  111    1235567999999


Q ss_pred             CCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         330 PSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       330 ~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ....+.. +.+||||||.||+|-|+++
T Consensus       125 ~g~f~~d-P~tlSGGQrARvaL~R~Ll  150 (213)
T COG4136         125 DGAFHQD-PATLSGGQRARVALLRALL  150 (213)
T ss_pred             chhhhcC-hhhcCcchHHHHHHHHHHH
Confidence            9988764 4899999999999999974

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=3.5e-23  Score=189.06  Aligned_cols=144  Identities=23%  Similarity=0.296  Sum_probs=107.6

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc-----cCCCceeEeeeccccCcCCeee
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGKVLLEKVNFGLDMESRVA  253 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~-----p~~G~i~~~g~~~~~~~~~~ia  253 (356)
                      +++++|+++.| +++.+++++||+|.+||+++|+||||||||||+++|+|+..     |++|+|.++|.++....     
T Consensus         3 ~l~~~~v~~~~-~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~-----   76 (250)
T PRK14266          3 RIEVENLNTYF-DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPA-----   76 (250)
T ss_pred             EEEEEeEEEEe-CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccc-----
Confidence            47899999999 45679999999999999999999999999999999999874     48999999987653100     


Q ss_pred             eecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC-CH----HHHHHHHh
Q psy2684         254 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-PY----EKSRRQLG  325 (356)
Q Consensus       254 lvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~-~~----~~~~~~L~  325 (356)
                                              .. ....+.+++|++|++.  +++. |+.+++...   .+. ..    ..+.++++
T Consensus        77 ------------------------~~-~~~~~~~i~~~~q~~~--~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~  128 (250)
T PRK14266         77 ------------------------VD-VVELRKKVGMVFQKPN--PFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLK  128 (250)
T ss_pred             ------------------------cc-HHHHhhheEEEecCCc--cCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHH
Confidence                                    00 0011346999999863  5554 888887532   111 11    23556788


Q ss_pred             hcCCCCc---cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         326 MFGLPSY---AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       326 ~~~l~~~---~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .+++...   ..++++.+||||||||++||++++
T Consensus       129 ~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~  162 (250)
T PRK14266        129 AAALWDEVKDKLDKSALGLSGGQQQRLCIARTIA  162 (250)
T ss_pred             HcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence            8887431   123577999999999999999974

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.89  E-value=1.9e-23  Score=176.73  Aligned_cols=143  Identities=29%  Similarity=0.430  Sum_probs=117.5

Q ss_pred             CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEee-eccccCcCCeeeeec
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK-VNFGLDMESRVALVG  256 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g-~~~~~~~~~~ialvG  256 (356)
                      ++++++|++++| ++-.+++++||+|.+||.-+|||||||||||++.+|+|..+|+.|+++|+| .++...+..+|    
T Consensus         4 ~iL~~~~vsVsF-~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~I----   78 (249)
T COG4674           4 IILYLDGVSVSF-GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRI----   78 (249)
T ss_pred             ceEEEeceEEEE-cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHH----
Confidence            579999999999 678899999999999999999999999999999999999999999999998 66642222121    


Q ss_pred             CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC------------C---CHHHHH
Q psy2684         257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN------------L---PYEKSR  321 (356)
Q Consensus       257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~------------~---~~~~~~  321 (356)
                                                 .+..||.=||.|  ..|.+.|+.||+.-..+            .   ...++.
T Consensus        79 ---------------------------Ar~GIGRKFQ~P--tVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~rid  129 (249)
T COG4674          79 ---------------------------ARAGIGRKFQKP--TVFENLTVRENLELALNRDKSVFASLFARLRAEERRRID  129 (249)
T ss_pred             ---------------------------HHhccCccccCC--eehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHH
Confidence                                       134577788987  48899999999853211            1   124578


Q ss_pred             HHHhhcCCCCccccCCCCCCChHHHHHHHHHHHc
Q psy2684         322 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT  355 (356)
Q Consensus       322 ~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~  355 (356)
                      +.|+..|+.+..+. ++..||-||||++.|+.++
T Consensus       130 e~La~igL~~~~~~-~A~~LSHGqKQwLEIGMll  162 (249)
T COG4674         130 ELLATIGLGDERDR-LAALLSHGQKQWLEIGMLL  162 (249)
T ss_pred             HHHHHcccchhhhh-hhhhhccchhhhhhhheee
Confidence            89999999987765 7899999999999999875

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.88  E-value=5.2e-23  Score=227.55  Aligned_cols=144  Identities=24%  Similarity=0.343  Sum_probs=117.8

Q ss_pred             CCcEEEecceeeeC-CCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684         177 PPVLGLHDVTFGYP-GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV  255 (356)
Q Consensus       177 ~~~l~~~~l~~~~~-~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv  255 (356)
                      .+.++++|+++.|+ +++.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...        
T Consensus       926 ~~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~--------  997 (2272)
T TIGR01257       926 VPGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETN--------  997 (2272)
T ss_pred             CceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcch--------
Confidence            45799999999995 356799999999999999999999999999999999999999999999998775210        


Q ss_pred             cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcC
Q psy2684         256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFG  328 (356)
Q Consensus       256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~  328 (356)
                                               ....+..+||++|++  .+++.+|+.|++...   .+.+    .+++.++|+.+|
T Consensus       998 -------------------------~~~~r~~IG~~pQ~~--~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vg 1050 (2272)
T TIGR01257       998 -------------------------LDAVRQSLGMCPQHN--ILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTG 1050 (2272)
T ss_pred             -------------------------HHHHhhcEEEEecCC--cCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence                                     001134699999986  478889999987532   2333    234678899999


Q ss_pred             CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         329 LPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       329 l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +.+..+. ++.+|||||||||+||++++
T Consensus      1051 L~~~~~~-~~~~LSGGqKQRLsLArALi 1077 (2272)
T TIGR01257      1051 LHHKRNE-EAQDLSGGMQRKLSVAIAFV 1077 (2272)
T ss_pred             CchhhcC-ChhhCCHHHHHHHHHHHHHH
Confidence            9876654 67999999999999999974

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.88  E-value=5.4e-23  Score=187.79  Aligned_cols=100  Identities=27%  Similarity=0.377  Sum_probs=85.5

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEecChhHHhhhcCEEEEE
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQ----TWKKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~----~~~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      +.++++|||||+|||+||.||+.+|++||.||||++||...+..+.++|+    +++.|+|+||||+..+.++||||+||
T Consensus       148 ~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VM  227 (316)
T COG0444         148 KSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVM  227 (316)
T ss_pred             hhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEE
Confidence            57899999999999999999999999999999999999998766655554    46789999999999999999999999


Q ss_pred             eCCeEeEecCCHHHHHHHHHHHHH
Q psy2684          79 DMKKLFYYKGNFTLFKKMYVQKRK  102 (356)
Q Consensus        79 ~~g~~~~~~g~~~~~~~~~~~~~~  102 (356)
                      ..|++++.+...+.|.+....+..
T Consensus       228 YaG~iVE~g~~~~i~~~P~HPYT~  251 (316)
T COG0444         228 YAGRIVEEGPVEEIFKNPKHPYTR  251 (316)
T ss_pred             ECcEEEEeCCHHHHhcCCCChHHH
Confidence            999999976655555554444333

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.88  E-value=2.8e-23  Score=178.91  Aligned_cols=111  Identities=38%  Similarity=0.597  Sum_probs=88.8

Q ss_pred             EEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         180 LGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       180 l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      ++++|+++.|++. ..+++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++....          
T Consensus         1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~----------   70 (171)
T cd03228           1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLD----------   70 (171)
T ss_pred             CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcC----------
Confidence            4689999999432 26999999999999999999999999999999999999999999999986542100          


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCccccCCC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPI  338 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~  338 (356)
                                            ....+..++|++|++  .+++ .|+.+++                             
T Consensus        71 ----------------------~~~~~~~i~~~~~~~--~~~~-~t~~e~l-----------------------------   96 (171)
T cd03228          71 ----------------------LESLRKNIAYVPQDP--FLFS-GTIRENI-----------------------------   96 (171)
T ss_pred             ----------------------HHHHHhhEEEEcCCc--hhcc-chHHHHh-----------------------------
Confidence                                  000124689999986  3444 4666553                             


Q ss_pred             CCCChHHHHHHHHHHHcC
Q psy2684         339 RDLSGGQKARVALAELTL  356 (356)
Q Consensus       339 ~~LSGGqkqRvalA~~~l  356 (356)
                        |||||||||+||++++
T Consensus        97 --LS~G~~~rl~la~al~  112 (171)
T cd03228          97 --LSGGQRQRIAIARALL  112 (171)
T ss_pred             --hCHHHHHHHHHHHHHh
Confidence              9999999999999874

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.88  E-value=2.2e-23  Score=173.28  Aligned_cols=157  Identities=24%  Similarity=0.253  Sum_probs=112.8

Q ss_pred             CCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684         176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV  255 (356)
Q Consensus       176 ~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv  255 (356)
                      .+|++++.++++.| +.....+++||++++||+++|+|.||||||||+++|++-+.|+.|+|.+...+=..     .   
T Consensus         3 ~~PLL~V~~lsk~Y-g~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~-----~---   73 (258)
T COG4107           3 DKPLLSVSGLSKLY-GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQP-----R---   73 (258)
T ss_pred             CCcceeehhhhhhh-CCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCc-----h---
Confidence            35789999999999 56678999999999999999999999999999999999999999999986422100     0   


Q ss_pred             cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCC----CHHHHHHHh----cCCCHHHHHHHHhhc
Q psy2684         256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDD----TPCEYLMKL----FNLPYEKSRRQLGMF  327 (356)
Q Consensus       256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~----t~~e~~~~~----~~~~~~~~~~~L~~~  327 (356)
                                  -++.   ..+.+.+.-.+...|++.|+|.+.+-..-    ++.|-++..    ++--...+.++|+.+
T Consensus        74 ------------dl~~---msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~V  138 (258)
T COG4107          74 ------------DLYT---MSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEV  138 (258)
T ss_pred             ------------hHhh---hchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhc
Confidence                        0000   01111111123468999999876553322    344544432    233345677899999


Q ss_pred             CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         328 GLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       328 ~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .++....+..+.++|||+|||+.|||-|+
T Consensus       139 EI~~~RiDD~PrtFSGGMqQRLQiARnLV  167 (258)
T COG4107         139 EIDLDRIDDLPRTFSGGMQQRLQIARNLV  167 (258)
T ss_pred             ccCcccccCcccccchHHHHHHHHHHHhc
Confidence            99865544456999999999999999763

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.88  E-value=4.3e-23  Score=210.07  Aligned_cols=142  Identities=27%  Similarity=0.389  Sum_probs=108.4

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      .++++|+++.|++++++++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...           
T Consensus       334 ~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~-----------  402 (585)
T TIGR01192       334 AVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTV-----------  402 (585)
T ss_pred             eEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhC-----------
Confidence            589999999996546789999999999999999999999999999999999999999999998775310           


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHhhcC---------
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFG---------  328 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-~~~~~~~~~~~L~~~~---------  328 (356)
                                     .      ....+..++|++|++.  ++ +.|+.+++... ...+.+++++.++..+         
T Consensus       403 ---------------~------~~~~~~~i~~v~q~~~--lf-~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~  458 (585)
T TIGR01192       403 ---------------T------RESLRKSIATVFQDAG--LF-NRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRS  458 (585)
T ss_pred             ---------------C------HHHHHhheEEEccCCc--cC-cccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcc
Confidence                           0      0011356999999973  55 46899998643 2344555555444433         


Q ss_pred             --CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         329 --LPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       329 --l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                        +...... ....||||||||++|||+++
T Consensus       459 ~g~~t~~~~-~~~~LSgGq~qrl~lARall  487 (585)
T TIGR01192       459 NGYDTLVGE-RGNRLSGGERQRLAIARAIL  487 (585)
T ss_pred             ccccchhcC-CCCCCCHHHHHHHHHHHHHh
Confidence              2322222 45789999999999999975

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.88  E-value=4.1e-23  Score=185.55  Aligned_cols=129  Identities=30%  Similarity=0.398  Sum_probs=100.4

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG  259 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG  259 (356)
                      +.++++++.| +++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++..             
T Consensus        23 l~~~~~~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~-------------   88 (224)
T cd03220          23 LGILGRKGEV-GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL-------------   88 (224)
T ss_pred             hhhhhhhhhc-CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchh-------------
Confidence            6789999999 66789999999999999999999999999999999999999999999998754310             


Q ss_pred             CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcCCCCc
Q psy2684         260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSY  332 (356)
Q Consensus       260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~l~~~  332 (356)
                                                     +.+.  ..+.+..|+.+++...   .+...    ..+.++++.+++.+.
T Consensus        89 -------------------------------~~~~--~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~  135 (224)
T cd03220          89 -------------------------------LGLG--GGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDF  135 (224)
T ss_pred             -------------------------------hccc--ccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh
Confidence                                           0000  1133456788876432   22222    235667888999776


Q ss_pred             cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         333 AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       333 ~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .. +++.+|||||||||+||++++
T Consensus       136 ~~-~~~~~LSgG~~qrv~laral~  158 (224)
T cd03220         136 ID-LPVKTYSSGMKARLAFAIATA  158 (224)
T ss_pred             hh-CChhhCCHHHHHHHHHHHHHh
Confidence            55 477999999999999999974

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.88  E-value=1e-22  Score=209.39  Aligned_cols=132  Identities=22%  Similarity=0.314  Sum_probs=108.0

Q ss_pred             CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      ..++++|+++.|++++.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++                
T Consensus       450 ~~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~----------------  513 (659)
T TIGR00954       450 NGIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA----------------  513 (659)
T ss_pred             CeEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC----------------
Confidence            4699999999996556799999999999999999999999999999999999999999886531                


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc--------CCCHHHHHHHHhhcCC
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF--------NLPYEKSRRQLGMFGL  329 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~--------~~~~~~~~~~L~~~~l  329 (356)
                                                 +.+++|++|++.  +++. |+.+++....        +...+++.++++.+++
T Consensus       514 ---------------------------~~~i~~v~Q~~~--l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l  563 (659)
T TIGR00954       514 ---------------------------KGKLFYVPQRPY--MTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQL  563 (659)
T ss_pred             ---------------------------CCcEEEECCCCC--CCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCC
Confidence                                       236899999973  5555 9999875421        2345677888999998


Q ss_pred             CCccccCC---------CCCCChHHHHHHHHHHHcC
Q psy2684         330 PSYAHTIP---------IRDLSGGQKARVALAELTL  356 (356)
Q Consensus       330 ~~~~~~~~---------~~~LSGGqkqRvalA~~~l  356 (356)
                      .+.... +         ..+||||||||++|||+++
T Consensus       564 ~~~~~~-~~g~~~~~~~~~~LSgGqkQRl~iARal~  598 (659)
T TIGR00954       564 THILER-EGGWSAVQDWMDVLSGGEKQRIAMARLFY  598 (659)
T ss_pred             HHHHhh-cCCcccccccccCCCHHHHHHHHHHHHHH
Confidence            765432 3         2689999999999999974

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.88  E-value=4.9e-23  Score=187.88  Aligned_cols=135  Identities=24%  Similarity=0.245  Sum_probs=102.9

Q ss_pred             EEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCC
Q psy2684         181 GLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGI  260 (356)
Q Consensus       181 ~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~  260 (356)
                      +++||++.     .+|+++||+|.+|++++|+||||||||||+++|+|+++ .+|+|.++|.++...             
T Consensus         2 ~~~~l~~~-----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~-------------   62 (248)
T PRK03695          2 QLNDVAVS-----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAW-------------   62 (248)
T ss_pred             cccccchh-----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcC-------------
Confidence            46777774     27999999999999999999999999999999999985 599999998765210             


Q ss_pred             chhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc--CCC----HHHHHHHHhhcCCCCccc
Q psy2684         261 GKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF--NLP----YEKSRRQLGMFGLPSYAH  334 (356)
Q Consensus       261 GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~--~~~----~~~~~~~L~~~~l~~~~~  334 (356)
                                        . ....+..++|++|++.  ++...|+.+++....  ...    ...+.++++.+++.....
T Consensus        63 ------------------~-~~~~~~~i~~v~q~~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~  121 (248)
T PRK03695         63 ------------------S-AAELARHRAYLSQQQT--PPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLG  121 (248)
T ss_pred             ------------------C-HHHHhhheEEecccCc--cCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhc
Confidence                              0 0001235899999863  555778988875431  111    234678899999976554


Q ss_pred             cCCCCCCChHHHHHHHHHHHcC
Q psy2684         335 TIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       335 ~~~~~~LSGGqkqRvalA~~~l  356 (356)
                       +++..|||||||||+||++++
T Consensus       122 -~~~~~LS~G~~qrv~la~al~  142 (248)
T PRK03695        122 -RSVNQLSGGEWQRVRLAAVVL  142 (248)
T ss_pred             -CCcccCCHHHHHHHHHHHHHh
Confidence             477999999999999999974

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.88  E-value=1.3e-22  Score=187.83  Aligned_cols=130  Identities=26%  Similarity=0.341  Sum_probs=97.5

Q ss_pred             CCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684         176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV  255 (356)
Q Consensus       176 ~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv  255 (356)
                      +.+.++++|+++.   ++.+|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|              
T Consensus        36 ~~~~l~i~nls~~---~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g--------------   98 (282)
T cd03291          36 DDNNLFFSNLCLV---GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG--------------   98 (282)
T ss_pred             CCCeEEEEEEEEe---cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC--------------
Confidence            3457899999985   34699999999999999999999999999999999999999999998752              


Q ss_pred             cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCc---
Q psy2684         256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSY---  332 (356)
Q Consensus       256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~---  332 (356)
                                                     +++|++|++  .+++ .|+.+++..........+...+..+++...   
T Consensus        99 -------------------------------~i~yv~q~~--~l~~-~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~  144 (282)
T cd03291          99 -------------------------------RISFSSQFS--WIMP-GTIKENIIFGVSYDEYRYKSVVKACQLEEDITK  144 (282)
T ss_pred             -------------------------------EEEEEeCcc--cccc-cCHHHHhhcccccCHHHHHHHHHHhCCHHHHHh
Confidence                                           378999986  3555 488888753222222233344444444221   


Q ss_pred             -------cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         333 -------AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       333 -------~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                             ....++.+|||||||||+||++++
T Consensus       145 ~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~  175 (282)
T cd03291         145 FPEKDNTVLGEGGITLSGGQRARISLARAVY  175 (282)
T ss_pred             ccccccceecCCCCcCCHHHHHHHHHHHHHh
Confidence                   111245799999999999999974

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.88  E-value=6.1e-23  Score=180.10  Aligned_cols=117  Identities=26%  Similarity=0.305  Sum_probs=94.8

Q ss_pred             cEEEecceeeeCC---CccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccc--ccCCCceeEeeeccccCcCCeee
Q psy2684         179 VLGLHDVTFGYPG---GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL--TPNKGKVLLEKVNFGLDMESRVA  253 (356)
Q Consensus       179 ~l~~~~l~~~~~~---~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~--~p~~G~i~~~g~~~~~~~~~~ia  253 (356)
                      .++++|+++.|++   ++++++++||+|++|++++|+||||||||||+++|+|++  +|++|+|.++|.++.        
T Consensus         3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~--------   74 (192)
T cd03232           3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD--------   74 (192)
T ss_pred             EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH--------
Confidence            5789999999953   256999999999999999999999999999999999986  489999999876541        


Q ss_pred             eecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCcc
Q psy2684         254 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYA  333 (356)
Q Consensus       254 lvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~  333 (356)
                                                  ...+..++|++|++  .+++..|+.+++....         .+         
T Consensus        75 ----------------------------~~~~~~i~~~~q~~--~~~~~~tv~~~l~~~~---------~~---------  106 (192)
T cd03232          75 ----------------------------KNFQRSTGYVEQQD--VHSPNLTVREALRFSA---------LL---------  106 (192)
T ss_pred             ----------------------------HHhhhceEEecccC--ccccCCcHHHHHHHHH---------HH---------
Confidence                                        01124689999986  3677789998874210         00         


Q ss_pred             ccCCCCCCChHHHHHHHHHHHcC
Q psy2684         334 HTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       334 ~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                           .+|||||+|||+||++++
T Consensus       107 -----~~LSgGe~qrv~la~al~  124 (192)
T cd03232         107 -----RGLSVEQRKRLTIGVELA  124 (192)
T ss_pred             -----hcCCHHHhHHHHHHHHHh
Confidence                 189999999999999874

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.88  E-value=5.2e-23  Score=209.54  Aligned_cols=142  Identities=28%  Similarity=0.377  Sum_probs=110.0

Q ss_pred             cEEEecceeeeCCC--ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684         179 VLGLHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG  256 (356)
Q Consensus       179 ~l~~~~l~~~~~~~--~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG  256 (356)
                      .++++|+++.|+++  +.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++..-.        
T Consensus       337 ~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~--------  408 (576)
T TIGR02204       337 EIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLD--------  408 (576)
T ss_pred             eEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcC--------
Confidence            58999999999642  56999999999999999999999999999999999999999999999998763100        


Q ss_pred             CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHhhcCCCCc---
Q psy2684         257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSY---  332 (356)
Q Consensus       257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~L~~~~l~~~---  332 (356)
                                              ....+..++|++|++.  +| +.|+.+|+.... ..+.+++.+.++.+++...   
T Consensus       409 ------------------------~~~~~~~i~~~~Q~~~--lf-~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~  461 (576)
T TIGR02204       409 ------------------------PAELRARMALVPQDPV--LF-AASVMENIRYGRPDATDEEVEAAARAAHAHEFISA  461 (576)
T ss_pred             ------------------------HHHHHHhceEEccCCc--cc-cccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHh
Confidence                                    0011346999999973  44 568999986432 3456677777777665321   


Q ss_pred             --------cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         333 --------AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       333 --------~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                              ... ....||||||||++|||+++
T Consensus       462 l~~gl~t~i~~-~g~~LSgGq~Qrl~laRal~  492 (576)
T TIGR02204       462 LPEGYDTYLGE-RGVTLSGGQRQRIAIARAIL  492 (576)
T ss_pred             CCCCCCceeCC-CCCcCCHHHHHHHHHHHHHH
Confidence                    111 23579999999999999974

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.88  E-value=2.9e-22  Score=202.81  Aligned_cols=97  Identities=35%  Similarity=0.543  Sum_probs=91.1

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEEeC-
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDM-   80 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l~~-   80 (356)
                      .++++.+||||||||++||++|+.+|++|||||||++||+.+++++.++|.++++|||+||||++++..+||+|++|++ 
T Consensus       439 ~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~  518 (556)
T PRK11819        439 QQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGD  518 (556)
T ss_pred             hcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEEEEEECC
Confidence            3678999999999999999999999999999999999999999999999999988999999999999999999999986 


Q ss_pred             CeEeEecCCHHHHHHHHH
Q psy2684          81 KKLFYYKGNFTLFKKMYV   98 (356)
Q Consensus        81 g~~~~~~g~~~~~~~~~~   98 (356)
                      |++..|.|+|+.|.+...
T Consensus       519 g~~~~~~g~~~~~~~~~~  536 (556)
T PRK11819        519 SQVEWFEGNFQEYEEDKK  536 (556)
T ss_pred             CeEEEecCCHHHHHHHHH
Confidence            899889999999977543

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.88  E-value=5e-23  Score=209.09  Aligned_cols=142  Identities=26%  Similarity=0.326  Sum_probs=109.6

Q ss_pred             cEEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         179 VLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       179 ~l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      -++++|++++|+++ .++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++....         
T Consensus       313 ~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~---------  383 (569)
T PRK10789        313 ELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQ---------  383 (569)
T ss_pred             cEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCC---------
Confidence            48999999999643 56999999999999999999999999999999999999999999999987753100         


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHhhcCCCC-----
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPS-----  331 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-~~~~~~~~~~~L~~~~l~~-----  331 (356)
                                             ....+..++|++|++.  +++ .|+.+++... ...+.+++.+.++..++..     
T Consensus       384 -----------------------~~~~~~~i~~v~q~~~--lf~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~l  437 (569)
T PRK10789        384 -----------------------LDSWRSRLAVVSQTPF--LFS-DTVANNIALGRPDATQQEIEHVARLASVHDDILRL  437 (569)
T ss_pred             -----------------------HHHHHhheEEEccCCe--ecc-ccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhC
Confidence                                   0011356999999973  564 5999998643 2345666666666655532     


Q ss_pred             ------ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         332 ------YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       332 ------~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                            .... ....||||||||++|||+++
T Consensus       438 p~gl~t~~~~-~g~~LSgGq~qRi~lARall  467 (569)
T PRK10789        438 PQGYDTEVGE-RGVMLSGGQKQRISIARALL  467 (569)
T ss_pred             cCcccceecC-CCCcCCHHHHHHHHHHHHHh
Confidence                  1122 24679999999999999974

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.88  E-value=1e-22  Score=180.02  Aligned_cols=80  Identities=36%  Similarity=0.478  Sum_probs=72.7

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH----HHHHHhcCcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWL----DNYLQTWKKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l----~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++++|||||||||+|||||+.+|+|||||||+++||..++..|    .++.++.+.|||+||||++++-.++|||++
T Consensus       124 ~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivv  203 (248)
T COG1116         124 EDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVV  203 (248)
T ss_pred             hhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEE
Confidence            4789999999999999999999999999999999999999997554    455556689999999999999999999999


Q ss_pred             EeCC
Q psy2684          78 LDMK   81 (356)
Q Consensus        78 l~~g   81 (356)
                      |.++
T Consensus       204 l~~~  207 (248)
T COG1116         204 LSNR  207 (248)
T ss_pred             ecCC
Confidence            9984

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.88  E-value=5.9e-24  Score=176.12  Aligned_cols=121  Identities=36%  Similarity=0.477  Sum_probs=95.6

Q ss_pred             cccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCC
Q psy2684         196 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP  275 (356)
Q Consensus       196 l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~  275 (356)
                      |+++||+|++|++++|+|+||||||||+++|+|+++|++|.|.++|.++...                            
T Consensus         1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~----------------------------   52 (137)
T PF00005_consen    1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDI----------------------------   52 (137)
T ss_dssp             EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTS----------------------------
T ss_pred             CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccc----------------------------
Confidence            6899999999999999999999999999999999999999999998876410                            


Q ss_pred             CcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCccc---cCCCCCCChHHHHHHHHH
Q psy2684         276 NKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAH---TIPIRDLSGGQKARVALA  352 (356)
Q Consensus       276 ~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~---~~~~~~LSGGqkqRvalA  352 (356)
                          .....+..++|++|++  .+++..|+.++.      ...++.++++.+++.....   .+++..|||||||||+||
T Consensus        53 ----~~~~~~~~i~~~~~~~--~~~~~~tv~~~~------~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la  120 (137)
T PF00005_consen   53 ----DIEELRRRIGYVPQDP--QLFPGLTVRENE------SDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALA  120 (137)
T ss_dssp             ----HHHHHHHTEEEEESSH--CHHTTSBHHHHH------HHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHH
T ss_pred             ----cccccccccccccccc--cccccccccccc------ccccccccccccccccccccccccccchhhHHHHHHHHHH
Confidence                0011235699999985  477788888872      2345777888888765332   223499999999999999


Q ss_pred             HHcC
Q psy2684         353 ELTL  356 (356)
Q Consensus       353 ~~~l  356 (356)
                      ++++
T Consensus       121 ~al~  124 (137)
T PF00005_consen  121 RALL  124 (137)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9873

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.88  E-value=6.4e-23  Score=175.99  Aligned_cols=97  Identities=26%  Similarity=0.399  Sum_probs=87.0

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcC--cEEEEEecChhHHhhhcCEEEEEe
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK--KTLLVVSHDQSFLNNICTDIIHLD   79 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~l~~~~~~i~~l~   79 (356)
                      ++++...|||||+||+.|||+|+.+|+||||||||+.|||.+...+++++.+++  .|||+|||++.-+.+++|+++++.
T Consensus       143 L~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~  222 (253)
T COG1117         143 LHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFY  222 (253)
T ss_pred             hhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhc
Confidence            467788999999999999999999999999999999999999888888777764  699999999999999999999999


Q ss_pred             CCeEeEecCCHHHHHHHHH
Q psy2684          80 MKKLFYYKGNFTLFKKMYV   98 (356)
Q Consensus        80 ~g~~~~~~g~~~~~~~~~~   98 (356)
                      .|++++|+..-.-|..+..
T Consensus       223 ~G~LvE~g~T~~iF~~P~~  241 (253)
T COG1117         223 LGELVEFGPTDKIFTNPKH  241 (253)
T ss_pred             ccEEEEEcCHHhhhcCccH
Confidence            9999999777666665544

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.88  E-value=1.5e-22  Score=181.20  Aligned_cols=91  Identities=33%  Similarity=0.445  Sum_probs=80.3

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .+|++.+|||||+|||.|||||+.+|++|||||||+++|+.+...+.++|+++   +.||++||||++.+.+.||+|+.|
T Consensus       133 ~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L  212 (254)
T COG1121         133 RDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL  212 (254)
T ss_pred             hCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE
Confidence            58999999999999999999999999999999999999999998887777765   679999999999999999999999


Q ss_pred             eCCeEeEecCCHHHHH
Q psy2684          79 DMKKLFYYKGNFTLFK   94 (356)
Q Consensus        79 ~~g~~~~~~g~~~~~~   94 (356)
                      +..-+.  .|+.+.+.
T Consensus       213 n~~~~~--~G~~~~~~  226 (254)
T COG1121         213 NRHLIA--SGPPEEVL  226 (254)
T ss_pred             cCeeEe--ccChhhcc
Confidence            865543  46665443

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.88  E-value=3.1e-22  Score=202.51  Aligned_cols=96  Identities=35%  Similarity=0.567  Sum_probs=90.0

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEEeC-
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDM-   80 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l~~-   80 (356)
                      .++++.+||||||||++||++|+.+|++|||||||++||+.+++++.++|+++++|||+||||++++..+||+|++|++ 
T Consensus       437 ~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~l~~~  516 (552)
T TIGR03719       437 QQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGD  516 (552)
T ss_pred             hcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEEEECC
Confidence            3678999999999999999999999999999999999999999999999999988999999999999999999999997 


Q ss_pred             CeEeEecCCHHHHHHHH
Q psy2684          81 KKLFYYKGNFTLFKKMY   97 (356)
Q Consensus        81 g~~~~~~g~~~~~~~~~   97 (356)
                      |++..|.|+|+.|.+.+
T Consensus       517 ~~~~~~~g~~~~~~~~~  533 (552)
T TIGR03719       517 SHVEWFEGNYSEYEEDK  533 (552)
T ss_pred             CeEEEeCCCHHHHHHHH
Confidence            68888999998886643

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.88  E-value=9.3e-23  Score=194.30  Aligned_cols=142  Identities=28%  Similarity=0.374  Sum_probs=107.5

Q ss_pred             CcEEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684         178 PVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG  256 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG  256 (356)
                      -.+.++++++.-|+. +++++++||++.+||.++||||||||||||.|+|.|..+|.+|.|.++|.++.....+.     
T Consensus       333 g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~-----  407 (580)
T COG4618         333 GALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQ-----  407 (580)
T ss_pred             ceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHH-----
Confidence            468999999977654 47999999999999999999999999999999999999999999999998875432211     


Q ss_pred             CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHH---------HHHHhh
Q psy2684         257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKS---------RRQLGM  326 (356)
Q Consensus       257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~---------~~~L~~  326 (356)
                                                 ..++|||+||+..  +|+ -|+.||+.+.. +.+.+.+         .+++-+
T Consensus       408 ---------------------------lG~hiGYLPQdVe--LF~-GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~  457 (580)
T COG4618         408 ---------------------------LGRHIGYLPQDVE--LFD-GTIAENIARFGEEADPEKVIEAARLAGVHELILR  457 (580)
T ss_pred             ---------------------------hccccCcCcccce--ecC-CcHHHHHHhccccCCHHHHHHHHHHcChHHHHHh
Confidence                                       1357999999973  664 48999988765 3443332         233333


Q ss_pred             cC--CCCccccCCCCCCChHHHHHHHHHHHc
Q psy2684         327 FG--LPSYAHTIPIRDLSGGQKARVALAELT  355 (356)
Q Consensus       327 ~~--l~~~~~~~~~~~LSGGqkqRvalA~~~  355 (356)
                      +-  .+..... --..||||||||++|||++
T Consensus       458 lP~GYdT~iG~-~G~~LSgGQRQRIaLARAl  487 (580)
T COG4618         458 LPQGYDTRIGE-GGATLSGGQRQRIALARAL  487 (580)
T ss_pred             CcCCccCccCC-CCCCCCchHHHHHHHHHHH
Confidence            32  2222211 1258999999999999996

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.88  E-value=1.5e-22  Score=180.90  Aligned_cols=82  Identities=30%  Similarity=0.455  Sum_probs=76.5

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++++++   +.|||+||||.+++..+||++++|
T Consensus       132 ~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l  211 (216)
T TIGR00960       132 AHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTL  211 (216)
T ss_pred             hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            36788999999999999999999999999999999999999999998888765   679999999999999999999999


Q ss_pred             eCCeE
Q psy2684          79 DMKKL   83 (356)
Q Consensus        79 ~~g~~   83 (356)
                      ++|++
T Consensus       212 ~~G~i  216 (216)
T TIGR00960       212 SRGRL  216 (216)
T ss_pred             eCCcC
Confidence            99874

>KOG0055|consensus

Probab=99.88  E-value=2.5e-23  Score=216.90  Aligned_cols=143  Identities=28%  Similarity=0.352  Sum_probs=108.3

Q ss_pred             CcEEEecceeeeCCC--ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684         178 PVLGLHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV  255 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~--~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv  255 (356)
                      ..++++||+|+||..  ..+|+++||+|++|+.++|||||||||||++++|.++|.|++|+|+++|.++..-        
T Consensus       349 g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~--------  420 (1228)
T KOG0055|consen  349 GEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNL--------  420 (1228)
T ss_pred             cceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhc--------
Confidence            358999999999743  3699999999999999999999999999999999999999999999999886410        


Q ss_pred             cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHhhcC------
Q psy2684         256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFG------  328 (356)
Q Consensus       256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~L~~~~------  328 (356)
                                             . ....+.+||.|+|+|   .+-..|+.|++.... +.+.+++.++.+..+      
T Consensus       421 -----------------------~-~~~lr~~iglV~QeP---vlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~  473 (1228)
T KOG0055|consen  421 -----------------------N-LKWLRSQIGLVSQEP---VLFATTIRENIRYGKPDATREEIEEAAKAANAHDFIL  473 (1228)
T ss_pred             -----------------------c-hHHHHhhcCeeeech---hhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHH
Confidence                                   0 011245799999998   344678999986543 445555555443332      


Q ss_pred             -----CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         329 -----LPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       329 -----l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                           ++....++- -+||||||||+||||+++
T Consensus       474 ~lp~g~~T~vge~g-~qLSGGQKQRIAIARalv  505 (1228)
T KOG0055|consen  474 KLPDGYDTLVGERG-VQLSGGQKQRIAIARALV  505 (1228)
T ss_pred             hhHHhhcccccCCC-CCCChHHHHHHHHHHHHH
Confidence                 222222222 369999999999999974

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.88  E-value=4.2e-23  Score=208.99  Aligned_cols=141  Identities=24%  Similarity=0.268  Sum_probs=107.9

Q ss_pred             cEEEecceeeeCCC----ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeee
Q psy2684         179 VLGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVAL  254 (356)
Q Consensus       179 ~l~~~~l~~~~~~~----~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ial  254 (356)
                      -++++|+++.|++.    +++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++....      
T Consensus       337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~------  410 (555)
T TIGR01194       337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADS------  410 (555)
T ss_pred             eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC------
Confidence            48999999999642    25899999999999999999999999999999999999999999999998763100      


Q ss_pred             ecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCccc
Q psy2684         255 VGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAH  334 (356)
Q Consensus       255 vG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~  334 (356)
                                                ....+..++|++|++.  +|.. |+.++.  ......++++++++.+++.+...
T Consensus       411 --------------------------~~~~~~~i~~v~q~~~--lf~~-ti~~n~--~~~~~~~~~~~~~~~~~l~~~~~  459 (555)
T TIGR01194       411 --------------------------RDDYRDLFSAIFADFH--LFDD-LIGPDE--GEHASLDNAQQYLQRLEIADKVK  459 (555)
T ss_pred             --------------------------HHHHHhhCcEEccChh--hhhh-hhhccc--ccchhHHHHHHHHHHcCCchhhc
Confidence                                      0011346899999873  4433 444442  12234566788899999876433


Q ss_pred             cCC-----CCCCChHHHHHHHHHHHcC
Q psy2684         335 TIP-----IRDLSGGQKARVALAELTL  356 (356)
Q Consensus       335 ~~~-----~~~LSGGqkqRvalA~~~l  356 (356)
                      ..|     ...||||||||++|||+++
T Consensus       460 ~lp~g~~t~~~LSgGq~qRlalaRall  486 (555)
T TIGR01194       460 IEDGGFSTTTALSTGQQKRLALICAWL  486 (555)
T ss_pred             ccccccCCcccCCHHHHHHHHHHHHHH
Confidence            211     2579999999999999975

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.88  E-value=2e-22  Score=191.10  Aligned_cols=91  Identities=27%  Similarity=0.432  Sum_probs=82.4

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||||||+||+||+.+|++|||||||++||+.+..++.++|+++    +.|||+||||++++.++||+|++
T Consensus       134 ~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~v  213 (343)
T TIGR02314       134 HDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAV  213 (343)
T ss_pred             hhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            46889999999999999999999999999999999999999998888777663    68999999999999999999999


Q ss_pred             EeCCeEeEecCCHHHH
Q psy2684          78 LDMKKLFYYKGNFTLF   93 (356)
Q Consensus        78 l~~g~~~~~~g~~~~~   93 (356)
                      |++|+++.. |+.+++
T Consensus       214 l~~G~iv~~-g~~~~v  228 (343)
T TIGR02314       214 ISNGELIEQ-GTVSEI  228 (343)
T ss_pred             EECCEEEEE-cCHHHH
Confidence            999999864 665544

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.88  E-value=1.7e-22  Score=183.88  Aligned_cols=122  Identities=25%  Similarity=0.338  Sum_probs=94.1

Q ss_pred             eeCCCccccccceeeec-----CCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCch
Q psy2684         188 GYPGGKVLLEKVNFGLD-----MESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGK  262 (356)
Q Consensus       188 ~~~~~~~~l~~~sl~i~-----~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GK  262 (356)
                      .|++....+++++|++.     +||+++|+||||||||||+++|+|+++|++|+|.++|.                    
T Consensus         2 ~y~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~--------------------   61 (246)
T cd03237           2 TYPTMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD--------------------   61 (246)
T ss_pred             CCcccccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc--------------------
Confidence            45444446667777765     79999999999999999999999999999999987631                    


Q ss_pred             hhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC---CCHHHHHHHHhhcCCCCccccCCCC
Q psy2684         263 STFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN---LPYEKSRRQLGMFGLPSYAHTIPIR  339 (356)
Q Consensus       263 sTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~---~~~~~~~~~L~~~~l~~~~~~~~~~  339 (356)
                                              +++|++|++.  .+...|+.+++.....   .....+.++++.+++....+ +++.
T Consensus        62 ------------------------~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~-~~~~  114 (246)
T cd03237          62 ------------------------TVSYKPQYIK--ADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILD-REVP  114 (246)
T ss_pred             ------------------------eEEEeccccc--CCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHHhh-CChh
Confidence                                    4789999863  3456788888743211   12234567899999986555 4779


Q ss_pred             CCChHHHHHHHHHHHcC
Q psy2684         340 DLSGGQKARVALAELTL  356 (356)
Q Consensus       340 ~LSGGqkqRvalA~~~l  356 (356)
                      +|||||||||+||++++
T Consensus       115 ~LSgGe~qrv~iaraL~  131 (246)
T cd03237         115 ELSGGELQRVAIAACLS  131 (246)
T ss_pred             hCCHHHHHHHHHHHHHh
Confidence            99999999999999974

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.88  E-value=5.1e-23  Score=213.67  Aligned_cols=142  Identities=25%  Similarity=0.424  Sum_probs=110.3

Q ss_pred             cEEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         179 VLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       179 ~l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      -++++|++++|+++ +.+++++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++..-          
T Consensus       455 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~----------  524 (694)
T TIGR01846       455 AITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIA----------  524 (694)
T ss_pred             eEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhC----------
Confidence            48999999999643 5699999999999999999999999999999999999999999999999876310          


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHhhcCCC------
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLP------  330 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-~~~~~~~~~~~L~~~~l~------  330 (356)
                                        +.    ...+..++|++|++.  ++ +.|+.|++... ...+.+++.+.++..++.      
T Consensus       525 ------------------~~----~~~r~~i~~v~q~~~--lf-~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~l  579 (694)
T TIGR01846       525 ------------------DP----AWLRRQMGVVLQENV--LF-SRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISEL  579 (694)
T ss_pred             ------------------CH----HHHHHhCeEEccCCe--eh-hhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhC
Confidence                              00    011356999999973  44 46899998643 245566666666665543      


Q ss_pred             -----CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         331 -----SYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       331 -----~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                           ..... ....||||||||++|||+++
T Consensus       580 p~gl~t~i~~-~g~~LSgGq~qri~lARall  609 (694)
T TIGR01846       580 PQGYNTEVGE-KGANLSGGQRQRIAIARALV  609 (694)
T ss_pred             cCccCcEecC-CCCCCCHHHHHHHHHHHHHH
Confidence                 22222 24689999999999999974

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.88  E-value=3.3e-22  Score=180.96  Aligned_cols=91  Identities=36%  Similarity=0.441  Sum_probs=82.1

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++++++    +.|||+||||++++..+||+|++
T Consensus       130 ~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~  209 (235)
T cd03261         130 EDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAV  209 (235)
T ss_pred             hcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEE
Confidence            36788999999999999999999999999999999999999999988888763    67999999999999999999999


Q ss_pred             EeCCeEeEecCCHHHH
Q psy2684          78 LDMKKLFYYKGNFTLF   93 (356)
Q Consensus        78 l~~g~~~~~~g~~~~~   93 (356)
                      |++|++.. .|+.+.+
T Consensus       210 l~~G~i~~-~g~~~~~  224 (235)
T cd03261         210 LYDGKIVA-EGTPEEL  224 (235)
T ss_pred             EECCeEEE-ecCHHHH
Confidence            99999974 4665544

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.87  E-value=2.9e-22  Score=178.66  Aligned_cols=83  Identities=36%  Similarity=0.444  Sum_probs=77.9

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      ++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++++++    +.|||+||||.+++.++||++++|
T Consensus       125 ~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l  204 (213)
T cd03259         125 NRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVM  204 (213)
T ss_pred             hcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEE
Confidence            5788999999999999999999999999999999999999999998888764    679999999999999999999999


Q ss_pred             eCCeEeE
Q psy2684          79 DMKKLFY   85 (356)
Q Consensus        79 ~~g~~~~   85 (356)
                      ++|++..
T Consensus       205 ~~G~i~~  211 (213)
T cd03259         205 NEGRIVQ  211 (213)
T ss_pred             ECCEEEe
Confidence            9999864

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.87  E-value=3.2e-22  Score=187.52  Aligned_cols=90  Identities=31%  Similarity=0.400  Sum_probs=81.4

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++++++   +.|||+||||++++.++||||++|
T Consensus       159 ~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl  238 (305)
T PRK13651        159 LQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFF  238 (305)
T ss_pred             hhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEE
Confidence            46889999999999999999999999999999999999999999988877654   689999999999999999999999


Q ss_pred             eCCeEeEecCCHHH
Q psy2684          79 DMKKLFYYKGNFTL   92 (356)
Q Consensus        79 ~~g~~~~~~g~~~~   92 (356)
                      ++|+++.. |..+.
T Consensus       239 ~~G~i~~~-g~~~~  251 (305)
T PRK13651        239 KDGKIIKD-GDTYD  251 (305)
T ss_pred             ECCEEEEE-CCHHH
Confidence            99999865 44433

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.87  E-value=8.5e-23  Score=174.47  Aligned_cols=64  Identities=33%  Similarity=0.588  Sum_probs=59.5

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF  244 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~  244 (356)
                      ++++|+++.| ++.++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus         1 l~~~~l~~~~-~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~   64 (163)
T cd03216           1 LELRGITKRF-GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEV   64 (163)
T ss_pred             CEEEEEEEEE-CCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEC
Confidence            4689999999 456799999999999999999999999999999999999999999999998765

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.87  E-value=1.8e-22  Score=223.41  Aligned_cols=144  Identities=22%  Similarity=0.292  Sum_probs=116.3

Q ss_pred             CCcEEEecceeeeCC-CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684         177 PPVLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV  255 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~-~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv  255 (356)
                      ..+++++|+++.|++ .+.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...        
T Consensus      1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~-------- 2006 (2272)
T TIGR01257      1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTN-------- 2006 (2272)
T ss_pred             CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcch--------
Confidence            357999999999953 25799999999999999999999999999999999999999999999998765200        


Q ss_pred             cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcC
Q psy2684         256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFG  328 (356)
Q Consensus       256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~  328 (356)
                                               ....+..|||++|+.  .+++.+|+.|++...   .+.+.    +.+.++|+.+|
T Consensus      2007 -------------------------~~~~r~~IGy~pQ~~--~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lg 2059 (2272)
T TIGR01257      2007 -------------------------ISDVHQNMGYCPQFD--AIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLG 2059 (2272)
T ss_pred             -------------------------HHHHhhhEEEEeccc--cCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence                                     001134699999985  477889999987532   33333    23556899999


Q ss_pred             CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         329 LPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       329 l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +....+ +++++|||||||||+||++++
T Consensus      2060 L~~~~d-k~~~~LSGGqKqRLslA~ALi 2086 (2272)
T TIGR01257      2060 LSLYAD-RLAGTYSGGNKRKLSTAIALI 2086 (2272)
T ss_pred             CHHHhc-CChhhCCHHHHHHHHHHHHHh
Confidence            987665 478999999999999999974

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.87  E-value=3.9e-22  Score=176.77  Aligned_cols=83  Identities=29%  Similarity=0.559  Sum_probs=77.5

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++.+.+|||||+||++||++|+.+|++|||||||++||+.+++++.++|+++   +.|||+||||++++..+||++++|
T Consensus       120 ~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l  199 (205)
T cd03226         120 KERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLL  199 (205)
T ss_pred             cCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            36788999999999999999999999999999999999999999999888765   579999999999999999999999


Q ss_pred             eCCeEe
Q psy2684          79 DMKKLF   84 (356)
Q Consensus        79 ~~g~~~   84 (356)
                      ++|+++
T Consensus       200 ~~G~iv  205 (205)
T cd03226         200 ANGAIV  205 (205)
T ss_pred             ECCEEC
Confidence            999864

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.87  E-value=1.8e-22  Score=187.42  Aligned_cols=153  Identities=24%  Similarity=0.341  Sum_probs=118.1

Q ss_pred             CCCcEEEecceeeeC---CCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc-----CCCceeEeeeccccC
Q psy2684         176 PPPVLGLHDVTFGYP---GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGKVLLEKVNFGLD  247 (356)
Q Consensus       176 ~~~~l~~~~l~~~~~---~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p-----~~G~i~~~g~~~~~~  247 (356)
                      ..++++++|+++.|.   +...+++++||+|++||.+||||.||||||-..+.++++++-     -+|+|.|+|.++--.
T Consensus         3 ~~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~   82 (534)
T COG4172           3 TMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA   82 (534)
T ss_pred             CCcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC
Confidence            357899999999994   235699999999999999999999999999999999999865     468999999886311


Q ss_pred             cCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHH----hcCCCH----HH
Q psy2684         248 MESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK----LFNLPY----EK  319 (356)
Q Consensus       248 ~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~----~~~~~~----~~  319 (356)
                                                  .+..++.-+..+|+++||+|...++|-.|+...+..    ..+...    .+
T Consensus        83 ----------------------------se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r  134 (534)
T COG4172          83 ----------------------------SERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARAR  134 (534)
T ss_pred             ----------------------------CHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHH
Confidence                                        111122223457999999998889998888766543    234333    45


Q ss_pred             HHHHHhhcCCCCcc--ccCCCCCCChHHHHHHHHHHHcC
Q psy2684         320 SRRQLGMFGLPSYA--HTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       320 ~~~~L~~~~l~~~~--~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +.++|+.+|++...  .+.+|++|||||||||+||.++.
T Consensus       135 ~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALa  173 (534)
T COG4172         135 ALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALA  173 (534)
T ss_pred             HHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHc
Confidence            66789999997532  23356999999999999999874

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.87  E-value=4.9e-22  Score=175.31  Aligned_cols=81  Identities=35%  Similarity=0.522  Sum_probs=72.9

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      ++++.+|||||||||+|||||+.+|+++|.||||.+||..+.+.+.+++.+.    +.||||||||.+... .|||++.|
T Consensus       137 ~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l  215 (226)
T COG1136         137 KKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIEL  215 (226)
T ss_pred             cCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEE
Confidence            3779999999999999999999999999999999999999988777766654    679999999988886 69999999


Q ss_pred             eCCeEe
Q psy2684          79 DMKKLF   84 (356)
Q Consensus        79 ~~g~~~   84 (356)
                      .+|++.
T Consensus       216 ~dG~~~  221 (226)
T COG1136         216 KDGKIE  221 (226)
T ss_pred             eCCeee
Confidence            999853

>PLN03073 ABC transporter F family; Provisional

Probab=99.87  E-value=7.4e-22  Score=203.57  Aligned_cols=93  Identities=35%  Similarity=0.553  Sum_probs=88.8

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEEeCCe
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMKK   82 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l~~g~   82 (356)
                      ++++.+||||||||++||++|+.+|++|||||||||||+.++++|.+.+.++++|||+||||++++..+||++++|++|+
T Consensus       622 ~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G~  701 (718)
T PLN03073        622 LQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGK  701 (718)
T ss_pred             cCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence            57899999999999999999999999999999999999999999999999888899999999999999999999999999


Q ss_pred             EeEecCCHHHHHH
Q psy2684          83 LFYYKGNFTLFKK   95 (356)
Q Consensus        83 ~~~~~g~~~~~~~   95 (356)
                      ++.|.|+|++|.+
T Consensus       702 i~~~~g~~~~~~~  714 (718)
T PLN03073        702 VTPFHGTFHDYKK  714 (718)
T ss_pred             EEEeCCCHHHHHH
Confidence            9988999988854

>KOG0062|consensus

Probab=99.87  E-value=5.4e-22  Score=189.14  Aligned_cols=94  Identities=33%  Similarity=0.585  Sum_probs=89.7

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEEeCCe
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMKK   82 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l~~g~   82 (356)
                      ..++.+||||||-||++|.....+|.+|+|||||||||.+++..|...|++|.+.||+||||.+|+..+|+.+|+.++|+
T Consensus       477 ~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~~c~E~Wvve~g~  556 (582)
T KOG0062|consen  477 LQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFISSLCKELWVVEDGK  556 (582)
T ss_pred             hccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcCCcEEEEECcHHHHhhcCceeEEEcCCc
Confidence            35688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeEecCCHHHHHHH
Q psy2684          83 LFYYKGNFTLFKKM   96 (356)
Q Consensus        83 ~~~~~g~~~~~~~~   96 (356)
                      +..+.|..+.|.+.
T Consensus       557 vt~ieg~~~~yKkl  570 (582)
T KOG0062|consen  557 VTPIEGGIDKYKKL  570 (582)
T ss_pred             EEeeeccHHHHHHH
Confidence            99999998888653

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.87  E-value=7.1e-22  Score=185.28  Aligned_cols=91  Identities=26%  Similarity=0.476  Sum_probs=82.8

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++++.+||||||||++||+||+.+|++|||||||++||+.++.++.++++++   +.|||++|||++++..+||+|++|
T Consensus       118 ~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l  197 (302)
T TIGR01188       118 ADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAII  197 (302)
T ss_pred             hCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence            46789999999999999999999999999999999999999999998888765   579999999999999999999999


Q ss_pred             eCCeEeEecCCHHHH
Q psy2684          79 DMKKLFYYKGNFTLF   93 (356)
Q Consensus        79 ~~g~~~~~~g~~~~~   93 (356)
                      ++|+++. .|+.+.+
T Consensus       198 ~~G~i~~-~g~~~~l  211 (302)
T TIGR01188       198 DHGRIIA-EGTPEEL  211 (302)
T ss_pred             ECCEEEE-ECCHHHH
Confidence            9999985 4665543

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.87  E-value=7.9e-22  Score=185.10  Aligned_cols=91  Identities=30%  Similarity=0.449  Sum_probs=83.1

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++++.+||||||||++||+||+.+|++|||||||++||+.++.++.++++++   +.|||++||+++++..+||||++|
T Consensus       132 ~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il  211 (306)
T PRK13537        132 ADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVI  211 (306)
T ss_pred             hcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence            36789999999999999999999999999999999999999999999888875   579999999999999999999999


Q ss_pred             eCCeEeEecCCHHHH
Q psy2684          79 DMKKLFYYKGNFTLF   93 (356)
Q Consensus        79 ~~g~~~~~~g~~~~~   93 (356)
                      ++|+++. .|+.+.+
T Consensus       212 ~~G~i~~-~g~~~~l  225 (306)
T PRK13537        212 EEGRKIA-EGAPHAL  225 (306)
T ss_pred             ECCEEEE-ECCHHHH
Confidence            9999975 4665544

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.87  E-value=7.8e-22  Score=185.10  Aligned_cols=90  Identities=31%  Similarity=0.445  Sum_probs=82.3

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++++.+||||||||++||++|+.+|++|||||||++||+.++.++.++++++   +.|||+||||++++.++||+|++|
T Consensus       129 ~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l  208 (303)
T TIGR01288       129 ADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVL  208 (303)
T ss_pred             hcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence            36788999999999999999999999999999999999999999999888775   679999999999999999999999


Q ss_pred             eCCeEeEecCCHHH
Q psy2684          79 DMKKLFYYKGNFTL   92 (356)
Q Consensus        79 ~~g~~~~~~g~~~~   92 (356)
                      ++|++.. .|+.+.
T Consensus       209 ~~G~i~~-~g~~~~  221 (303)
T TIGR01288       209 ESGRKIA-EGRPHA  221 (303)
T ss_pred             ECCEEEE-EcCHHH
Confidence            9999875 465544

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.87  E-value=1.3e-21  Score=177.75  Aligned_cols=91  Identities=26%  Similarity=0.410  Sum_probs=82.0

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||+||++||++|+.+|+||||||||++||+.++.++.++|+++    +.|||+||||++++..+||++++
T Consensus       138 ~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~  217 (241)
T cd03256         138 AYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVG  217 (241)
T ss_pred             hCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            36788999999999999999999999999999999999999999988888764    67999999999999999999999


Q ss_pred             EeCCeEeEecCCHHHH
Q psy2684          78 LDMKKLFYYKGNFTLF   93 (356)
Q Consensus        78 l~~g~~~~~~g~~~~~   93 (356)
                      |++|+++. .|+.+++
T Consensus       218 l~~G~i~~-~~~~~~~  232 (241)
T cd03256         218 LKDGRIVF-DGPPAEL  232 (241)
T ss_pred             EECCEEEe-ecCHHHh
Confidence            99999975 4666554

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.87  E-value=8.4e-22  Score=175.39  Aligned_cols=83  Identities=31%  Similarity=0.551  Sum_probs=78.5

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEeC
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLDM   80 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~   80 (356)
                      ++++.+|||||+||++||++|+.+|++|||||||++||+.+++++.++++++  +.|||+||||++++.++||++++|++
T Consensus       125 ~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~  204 (211)
T cd03264         125 KKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNK  204 (211)
T ss_pred             hCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEEC
Confidence            5788999999999999999999999999999999999999999999999876  57999999999999999999999999


Q ss_pred             CeEeE
Q psy2684          81 KKLFY   85 (356)
Q Consensus        81 g~~~~   85 (356)
                      |++..
T Consensus       205 g~i~~  209 (211)
T cd03264         205 GKLVF  209 (211)
T ss_pred             CEEEe
Confidence            99874

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=1.1e-21  Score=178.31  Aligned_cols=89  Identities=29%  Similarity=0.427  Sum_probs=80.9

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      ++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.+.|+++    +.|||+||||++++.++||+|++|
T Consensus       126 ~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l  205 (241)
T PRK14250        126 TRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFL  205 (241)
T ss_pred             hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEE
Confidence            5788999999999999999999999999999999999999999988877753    689999999999999999999999


Q ss_pred             eCCeEeEecCCHH
Q psy2684          79 DMKKLFYYKGNFT   91 (356)
Q Consensus        79 ~~g~~~~~~g~~~   91 (356)
                      ++|+++......+
T Consensus       206 ~~G~i~~~~~~~~  218 (241)
T PRK14250        206 NKGILVEYAKTYD  218 (241)
T ss_pred             eCCEEEEeCCHHH
Confidence            9999987644433

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=9.5e-22  Score=187.38  Aligned_cols=89  Identities=34%  Similarity=0.506  Sum_probs=80.8

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||+|||+|||+|+.+|++|||||||++||+..+.++.+.|++    ++.|+|+||||.+++..+||+|++
T Consensus       130 ~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~v  209 (351)
T PRK11432        130 EDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIV  209 (351)
T ss_pred             hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEE
Confidence            4789999999999999999999999999999999999999999887776654    478999999999999999999999


Q ss_pred             EeCCeEeEecCCHH
Q psy2684          78 LDMKKLFYYKGNFT   91 (356)
Q Consensus        78 l~~g~~~~~~g~~~   91 (356)
                      |++|++... |+.+
T Consensus       210 m~~G~i~~~-g~~~  222 (351)
T PRK11432        210 MNKGKIMQI-GSPQ  222 (351)
T ss_pred             EECCEEEEE-cCHH
Confidence            999999875 4443

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.86  E-value=1.1e-21  Score=174.94  Aligned_cols=85  Identities=29%  Similarity=0.443  Sum_probs=78.8

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++++++    +.|||+||||++++.++||++++
T Consensus       124 ~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~  203 (213)
T cd03301         124 LDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAV  203 (213)
T ss_pred             HhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEE
Confidence            36788999999999999999999999999999999999999999988888754    67999999999999999999999


Q ss_pred             EeCCeEeEe
Q psy2684          78 LDMKKLFYY   86 (356)
Q Consensus        78 l~~g~~~~~   86 (356)
                      |++|+++.+
T Consensus       204 l~~g~~~~~  212 (213)
T cd03301         204 MNDGQIQQI  212 (213)
T ss_pred             EECCEEEec
Confidence            999999764

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=1.3e-21  Score=185.59  Aligned_cols=89  Identities=26%  Similarity=0.257  Sum_probs=80.7

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEEE
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      ++.+.+|||||+|||+||+||+.+|++|||||||++||+.++.++.++|++    .+.|||+||||++++.++||+|++|
T Consensus       153 ~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm  232 (330)
T PRK15093        153 RSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVL  232 (330)
T ss_pred             hCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence            578899999999999999999999999999999999999999888877775    4689999999999999999999999


Q ss_pred             eCCeEeEecCCHHH
Q psy2684          79 DMKKLFYYKGNFTL   92 (356)
Q Consensus        79 ~~g~~~~~~g~~~~   92 (356)
                      ++|+++.. |+.++
T Consensus       233 ~~G~ive~-g~~~~  245 (330)
T PRK15093        233 YCGQTVET-APSKE  245 (330)
T ss_pred             ECCEEEEE-CCHHH
Confidence            99999864 55443

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.86  E-value=1.3e-21  Score=177.86  Aligned_cols=90  Identities=27%  Similarity=0.427  Sum_probs=81.4

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++|+++    +.|||+||||.+++.++||++++
T Consensus       139 ~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~  218 (243)
T TIGR02315       139 AYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVG  218 (243)
T ss_pred             hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEE
Confidence            36788999999999999999999999999999999999999999988888764    57999999999999999999999


Q ss_pred             EeCCeEeEecCCHHH
Q psy2684          78 LDMKKLFYYKGNFTL   92 (356)
Q Consensus        78 l~~g~~~~~~g~~~~   92 (356)
                      |++|+++. .|+.+.
T Consensus       219 l~~G~i~~-~~~~~~  232 (243)
T TIGR02315       219 LKAGEIVF-DGAPSE  232 (243)
T ss_pred             EECCEEEe-cCCHHH
Confidence            99999984 466554

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.86  E-value=1.3e-21  Score=175.39  Aligned_cols=85  Identities=28%  Similarity=0.491  Sum_probs=78.6

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||+||++||++|+.+|++|||||||++||+.+++++.++++++    +.|||+||||++++..+||++++
T Consensus       125 ~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~  204 (220)
T cd03265         125 ADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAI  204 (220)
T ss_pred             hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            36788999999999999999999999999999999999999999988877653    67999999999999999999999


Q ss_pred             EeCCeEeEe
Q psy2684          78 LDMKKLFYY   86 (356)
Q Consensus        78 l~~g~~~~~   86 (356)
                      |++|+++..
T Consensus       205 l~~G~i~~~  213 (220)
T cd03265         205 IDHGRIIAE  213 (220)
T ss_pred             EeCCEEEEe
Confidence            999999754

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.86  E-value=1.2e-21  Score=176.45  Aligned_cols=83  Identities=35%  Similarity=0.522  Sum_probs=77.6

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      ++++.+|||||+||++||++|+.+|++|||||||++||+.+++++.+.++++    +.|||+||||.+++..+||++++|
T Consensus       140 ~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l  219 (228)
T cd03257         140 NRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVM  219 (228)
T ss_pred             hCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEE
Confidence            6788999999999999999999999999999999999999999988888764    679999999999999999999999


Q ss_pred             eCCeEeE
Q psy2684          79 DMKKLFY   85 (356)
Q Consensus        79 ~~g~~~~   85 (356)
                      ++|++..
T Consensus       220 ~~G~i~~  226 (228)
T cd03257         220 YAGKIVE  226 (228)
T ss_pred             eCCEEEe
Confidence            9999864

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=1.3e-21  Score=186.79  Aligned_cols=90  Identities=29%  Similarity=0.406  Sum_probs=80.8

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||+|||+|||||+.+|++|||||||++||+..+.++.+.+++    ++.|+|+||||.+++..+||+|++
T Consensus       128 ~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~v  207 (356)
T PRK11650        128 LDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVV  207 (356)
T ss_pred             hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            4788999999999999999999999999999999999999999887776654    478999999999999999999999


Q ss_pred             EeCCeEeEecCCHHH
Q psy2684          78 LDMKKLFYYKGNFTL   92 (356)
Q Consensus        78 l~~g~~~~~~g~~~~   92 (356)
                      |++|++..+ |+.+.
T Consensus       208 l~~G~i~~~-g~~~~  221 (356)
T PRK11650        208 MNGGVAEQI-GTPVE  221 (356)
T ss_pred             EeCCEEEEE-CCHHH
Confidence            999999875 54443

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=1.6e-21  Score=184.48  Aligned_cols=89  Identities=27%  Similarity=0.477  Sum_probs=80.6

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||+||++||+||+.+|++||+||||++||+.++.++.++|++    .+.|||+||||++++.++||+|++
T Consensus       148 ~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~v  227 (327)
T PRK11308        148 YDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMV  227 (327)
T ss_pred             hcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            3678999999999999999999999999999999999999999888777764    468999999999999999999999


Q ss_pred             EeCCeEeEecCCHH
Q psy2684          78 LDMKKLFYYKGNFT   91 (356)
Q Consensus        78 l~~g~~~~~~g~~~   91 (356)
                      |++|+++++ |+.+
T Consensus       228 m~~G~ive~-g~~~  240 (327)
T PRK11308        228 MYLGRCVEK-GTKE  240 (327)
T ss_pred             EECCEEEEE-CCHH
Confidence            999999975 4433

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.86  E-value=1.3e-21  Score=187.02  Aligned_cols=89  Identities=29%  Similarity=0.396  Sum_probs=80.6

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----c-CcEEEEEecChhHHhhhcCEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----W-KKTLLVVSHDQSFLNNICTDII   76 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~-~~tvi~vsHd~~~l~~~~~~i~   76 (356)
                      .++.+.+|||||||||+||+||+.+|++|||||||++||+..+.++.+.|++    + +.|+|+||||.+++..+||+|+
T Consensus       131 ~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~  210 (362)
T TIGR03258       131 AAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAG  210 (362)
T ss_pred             hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEE
Confidence            4789999999999999999999999999999999999999999888776654    3 6799999999999999999999


Q ss_pred             EEeCCeEeEecCCHH
Q psy2684          77 HLDMKKLFYYKGNFT   91 (356)
Q Consensus        77 ~l~~g~~~~~~g~~~   91 (356)
                      +|++|+++.. |+.+
T Consensus       211 vl~~G~i~~~-g~~~  224 (362)
T TIGR03258       211 IMKDGRLAAH-GEPQ  224 (362)
T ss_pred             EEECCEEEEE-cCHH
Confidence            9999999875 5443

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.86  E-value=1.9e-21  Score=178.32  Aligned_cols=90  Identities=37%  Similarity=0.503  Sum_probs=82.4

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEEe
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHLD   79 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l~   79 (356)
                      ++++.+|||||+||++||++|+.+|++|||||||++||+.+++++.++|+++   +.|||+||||.+++..+||+|++|+
T Consensus       147 ~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~  226 (257)
T PRK10619        147 GKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLH  226 (257)
T ss_pred             hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEE
Confidence            5778999999999999999999999999999999999999999998887764   6799999999999999999999999


Q ss_pred             CCeEeEecCCHHHH
Q psy2684          80 MKKLFYYKGNFTLF   93 (356)
Q Consensus        80 ~g~~~~~~g~~~~~   93 (356)
                      +|+++. .|+++++
T Consensus       227 ~G~i~~-~~~~~~~  239 (257)
T PRK10619        227 QGKIEE-EGAPEQL  239 (257)
T ss_pred             CCEEEE-eCCHHHh
Confidence            999985 5776654

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.86  E-value=1.1e-21  Score=176.99  Aligned_cols=85  Identities=32%  Similarity=0.393  Sum_probs=78.5

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+||||||||++||++|+.+|++|||||||++||+.++.++.+.|+++    +.|||+||||++++..+||+|++
T Consensus       108 ~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~  187 (230)
T TIGR01184       108 ADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVM  187 (230)
T ss_pred             HcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE
Confidence            35788999999999999999999999999999999999999999988877653    67999999999999999999999


Q ss_pred             EeCCeEeEe
Q psy2684          78 LDMKKLFYY   86 (356)
Q Consensus        78 l~~g~~~~~   86 (356)
                      |++|+++.+
T Consensus       188 l~~G~i~~~  196 (230)
T TIGR01184       188 LTNGPAANI  196 (230)
T ss_pred             EeCCcEecc
Confidence            999999754

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=1.7e-21  Score=181.55  Aligned_cols=91  Identities=31%  Similarity=0.372  Sum_probs=82.6

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++++.+||||||||++||++|+.+|++|||||||++||+.++.++.++++++   +.|||+||||++++..+||+|++|
T Consensus       138 ~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l  217 (288)
T PRK13643        138 WEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLL  217 (288)
T ss_pred             ccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence            36889999999999999999999999999999999999999999988887654   679999999999999999999999


Q ss_pred             eCCeEeEecCCHHHH
Q psy2684          79 DMKKLFYYKGNFTLF   93 (356)
Q Consensus        79 ~~g~~~~~~g~~~~~   93 (356)
                      ++|+++. .|+.+.+
T Consensus       218 ~~G~i~~-~g~~~~~  231 (288)
T PRK13643        218 EKGHIIS-CGTPSDV  231 (288)
T ss_pred             ECCEEEE-ECCHHHH
Confidence            9999985 4666554

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=1.9e-21  Score=181.07  Aligned_cols=91  Identities=31%  Similarity=0.406  Sum_probs=82.3

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||+||++||+||+.+|++|||||||++||+.++.++.++++++    +.|||+||||++++..+||||++
T Consensus       138 ~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~  217 (287)
T PRK13637        138 KDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIV  217 (287)
T ss_pred             ccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            47889999999999999999999999999999999999999999988888654    67999999999999999999999


Q ss_pred             EeCCeEeEecCCHHHH
Q psy2684          78 LDMKKLFYYKGNFTLF   93 (356)
Q Consensus        78 l~~g~~~~~~g~~~~~   93 (356)
                      |++|++... |+.+.+
T Consensus       218 l~~G~i~~~-g~~~~~  232 (287)
T PRK13637        218 MNKGKCELQ-GTPREV  232 (287)
T ss_pred             EECCEEEEE-CCHHHH
Confidence            999999864 655544

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.86  E-value=5.2e-22  Score=204.00  Aligned_cols=148  Identities=26%  Similarity=0.359  Sum_probs=115.4

Q ss_pred             CcEEEecceeeeCCC---ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeee
Q psy2684         178 PVLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVAL  254 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~---~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ial  254 (356)
                      ++++++|+++.|+++   ..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....     
T Consensus         3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~-----   77 (648)
T PRK10535          3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDA-----   77 (648)
T ss_pred             cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCH-----
Confidence            479999999999532   469999999999999999999999999999999999999999999999877531000     


Q ss_pred             ecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhc
Q psy2684         255 VGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMF  327 (356)
Q Consensus       255 vG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~  327 (356)
                                             .......+..++|++|++  .+++..|+.|++...   .+..    ...+.++++.+
T Consensus        78 -----------------------~~~~~~~~~~i~~v~q~~--~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~l  132 (648)
T PRK10535         78 -----------------------DALAQLRREHFGFIFQRY--HLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRL  132 (648)
T ss_pred             -----------------------HHHHHHHhccEEEEeCCc--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence                                   000000134699999997  478888988877532   1222    23466789999


Q ss_pred             CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         328 GLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       328 ~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      |+.+..+ +++..|||||+||++||++++
T Consensus       133 gl~~~~~-~~~~~LS~Gq~qrv~LAraL~  160 (648)
T PRK10535        133 GLEDRVE-YQPSQLSGGQQQRVSIARALM  160 (648)
T ss_pred             CChhhhc-CCcccCCHHHHHHHHHHHHHh
Confidence            9987655 467999999999999999974

>KOG0063|consensus

Probab=99.86  E-value=1.2e-21  Score=182.92  Aligned_cols=79  Identities=23%  Similarity=0.346  Sum_probs=69.5

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      ++|.+..|||||.||.+||.+-+++.|++++|||.++||...+......++.+   ..=||+|+||+..++-..|-|+.+
T Consensus       207 ~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcL  286 (592)
T KOG0063|consen  207 LDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCL  286 (592)
T ss_pred             HHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEE
Confidence            57889999999999999999999999999999999999998876555545443   467999999999999999999999


Q ss_pred             eC
Q psy2684          79 DM   80 (356)
Q Consensus        79 ~~   80 (356)
                      ..
T Consensus       287 YG  288 (592)
T KOG0063|consen  287 YG  288 (592)
T ss_pred             ec
Confidence            74

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.86  E-value=1.6e-21  Score=191.15  Aligned_cols=132  Identities=27%  Similarity=0.339  Sum_probs=101.9

Q ss_pred             CCcEEEecceeeeCCC--ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeee
Q psy2684         177 PPVLGLHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVAL  254 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~~--~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ial  254 (356)
                      .++++++|+++.|+++  +.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.+.          
T Consensus        19 ~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~----------   88 (549)
T PRK13545         19 KPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA----------   88 (549)
T ss_pred             cceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee----------
Confidence            4689999999999543  3589999999999999999999999999999999999999999999976421          


Q ss_pred             ecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCHH----HHHHHHhhc
Q psy2684         255 VGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPYE----KSRRQLGMF  327 (356)
Q Consensus       255 vG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~~----~~~~~L~~~  327 (356)
                                                      .+++   .+  .+.+..|+.+++...   .+....    .+.++++.+
T Consensus        89 --------------------------------~i~~---~~--~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~l  131 (549)
T PRK13545         89 --------------------------------LIAI---SS--GLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFA  131 (549)
T ss_pred             --------------------------------eEEe---cc--ccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHc
Confidence                                            0111   11  234456888876431   223222    245678999


Q ss_pred             CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         328 GLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       328 ~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ++...... ++.+|||||||||+||++++
T Consensus       132 gL~~~ld~-~~~~LSGGQrQRVaLArAL~  159 (549)
T PRK13545        132 DIGKFIYQ-PVKTYSSGMKSRLGFAISVH  159 (549)
T ss_pred             CChhHhhC-CcccCCHHHHHHHHHHHHHH
Confidence            99776554 77999999999999999974

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.86  E-value=1.6e-21  Score=173.97  Aligned_cols=83  Identities=35%  Similarity=0.474  Sum_probs=77.6

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      ++++.+|||||+||++||++|+.+|++|||||||++||+.+++++.++++++    +.|||+||||.+++..+||++++|
T Consensus       126 ~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l  205 (214)
T cd03297         126 NRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVM  205 (214)
T ss_pred             hcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEE
Confidence            5788999999999999999999999999999999999999999988888654    679999999999999999999999


Q ss_pred             eCCeEeE
Q psy2684          79 DMKKLFY   85 (356)
Q Consensus        79 ~~g~~~~   85 (356)
                      ++|++..
T Consensus       206 ~~G~i~~  212 (214)
T cd03297         206 EDGRLQY  212 (214)
T ss_pred             ECCEEEe
Confidence            9999864

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.86  E-value=1.5e-21  Score=186.26  Aligned_cols=88  Identities=32%  Similarity=0.388  Sum_probs=80.3

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++.+.+|||||+|||+||++|+.+|++|||||||++||+..+.++.+.|++    ++.|+|+||||.+++..+||+|++
T Consensus       128 ~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~v  207 (353)
T TIGR03265       128 ERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVV  207 (353)
T ss_pred             hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEE
Confidence            4789999999999999999999999999999999999999998887776654    478999999999999999999999


Q ss_pred             EeCCeEeEecCC
Q psy2684          78 LDMKKLFYYKGN   89 (356)
Q Consensus        78 l~~g~~~~~~g~   89 (356)
                      |++|++..++..
T Consensus       208 l~~G~i~~~g~~  219 (353)
T TIGR03265       208 MNHGVIEQVGTP  219 (353)
T ss_pred             EECCEEEEEcCH
Confidence            999999876443

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.86  E-value=1.8e-21  Score=179.72  Aligned_cols=91  Identities=31%  Similarity=0.355  Sum_probs=81.9

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||+||++||++|+.+|++|||||||++||+.++..+.++++++    +.|||+||||++++..+||++++
T Consensus       137 ~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~  216 (269)
T PRK11831        137 AKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYI  216 (269)
T ss_pred             hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEE
Confidence            46788999999999999999999999999999999999999999888887764    57999999999999999999999


Q ss_pred             EeCCeEeEecCCHHHH
Q psy2684          78 LDMKKLFYYKGNFTLF   93 (356)
Q Consensus        78 l~~g~~~~~~g~~~~~   93 (356)
                      |++|++.. .|..+++
T Consensus       217 l~~G~i~~-~g~~~~~  231 (269)
T PRK11831        217 VADKKIVA-HGSAQAL  231 (269)
T ss_pred             EECCEEEE-eCCHHHH
Confidence            99999975 4665544

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=1.6e-21  Score=184.45  Aligned_cols=88  Identities=26%  Similarity=0.383  Sum_probs=79.6

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEEE
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      ++.+.+|||||+|||+||+||+.+|+|||+||||++||+.++..+.++|++    .+.|||+||||++++.++||+|++|
T Consensus       148 ~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm  227 (326)
T PRK11022        148 DVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVM  227 (326)
T ss_pred             hCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            578999999999999999999999999999999999999998887776665    3679999999999999999999999


Q ss_pred             eCCeEeEecCCHH
Q psy2684          79 DMKKLFYYKGNFT   91 (356)
Q Consensus        79 ~~g~~~~~~g~~~   91 (356)
                      ++|+++.. |+.+
T Consensus       228 ~~G~ive~-g~~~  239 (326)
T PRK11022        228 YAGQVVET-GKAH  239 (326)
T ss_pred             ECCEEEEE-CCHH
Confidence            99999875 5443

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.86  E-value=1.6e-21  Score=174.67  Aligned_cols=84  Identities=35%  Similarity=0.457  Sum_probs=77.5

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++.+.+|||||+||++||++|+.+|++|||||||++||+.++.++.++++++    +.|||+||||++++..+||++++
T Consensus       125 ~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~  204 (220)
T cd03293         125 ENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVV  204 (220)
T ss_pred             hhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEE
Confidence            36788999999999999999999999999999999999999999998888754    57999999999999999999999


Q ss_pred             Ee--CCeEeE
Q psy2684          78 LD--MKKLFY   85 (356)
Q Consensus        78 l~--~g~~~~   85 (356)
                      |+  +|+++.
T Consensus       205 l~~~~G~i~~  214 (220)
T cd03293         205 LSARPGRIVA  214 (220)
T ss_pred             EECCCCEEEE
Confidence            99  799864

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.86  E-value=1.6e-21  Score=187.32  Aligned_cols=89  Identities=30%  Similarity=0.475  Sum_probs=80.3

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+||||||||++||++|+.+|++|||||||++||+.++.++.+.|++    .+.|||+||||.+++..+||+|++
T Consensus       127 ~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~v  206 (369)
T PRK11000        127 LDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVV  206 (369)
T ss_pred             hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEE
Confidence            4688999999999999999999999999999999999999999888776664    368999999999999999999999


Q ss_pred             EeCCeEeEecCCHH
Q psy2684          78 LDMKKLFYYKGNFT   91 (356)
Q Consensus        78 l~~g~~~~~~g~~~   91 (356)
                      |++|++..+ |+.+
T Consensus       207 l~~G~i~~~-g~~~  219 (369)
T PRK11000        207 LDAGRVAQV-GKPL  219 (369)
T ss_pred             EECCEEEEE-cCHH
Confidence            999999865 5443

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.86  E-value=1.9e-21  Score=184.67  Aligned_cols=91  Identities=31%  Similarity=0.477  Sum_probs=83.0

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++.+.+||||||||++||++|+.+|++|||||||++||+.++.++.++++++   +.|||++||+++++.++||+|++|
T Consensus       166 ~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il  245 (340)
T PRK13536        166 ADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVL  245 (340)
T ss_pred             hCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence            46789999999999999999999999999999999999999999999888775   679999999999999999999999


Q ss_pred             eCCeEeEecCCHHHH
Q psy2684          79 DMKKLFYYKGNFTLF   93 (356)
Q Consensus        79 ~~g~~~~~~g~~~~~   93 (356)
                      ++|+++. .|+.+.+
T Consensus       246 ~~G~i~~-~g~~~~l  259 (340)
T PRK13536        246 EAGRKIA-EGRPHAL  259 (340)
T ss_pred             ECCEEEE-EcCHHHH
Confidence            9999985 4655543

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.86  E-value=1.7e-21  Score=176.40  Aligned_cols=90  Identities=29%  Similarity=0.426  Sum_probs=81.4

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++++++   +.|||+||||++++..+||++++|
T Consensus       137 ~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l  216 (236)
T cd03219         137 ADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVL  216 (236)
T ss_pred             hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence            36788999999999999999999999999999999999999999998888764   579999999999999999999999


Q ss_pred             eCCeEeEecCCHHH
Q psy2684          79 DMKKLFYYKGNFTL   92 (356)
Q Consensus        79 ~~g~~~~~~g~~~~   92 (356)
                      ++|++.. .|+.++
T Consensus       217 ~~G~i~~-~~~~~~  229 (236)
T cd03219         217 DQGRVIA-EGTPDE  229 (236)
T ss_pred             eCCEEEe-ecCHHH
Confidence            9999975 455543

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.86  E-value=1.8e-21  Score=184.27  Aligned_cols=90  Identities=30%  Similarity=0.511  Sum_probs=81.0

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||+||++||+||+.+|++|||||||++||+.++..+.++|++    ++.|||+||||++++.++||+|++
T Consensus       155 ~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~v  234 (331)
T PRK15079        155 INRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLV  234 (331)
T ss_pred             hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            3688999999999999999999999999999999999999999888777764    368999999999999999999999


Q ss_pred             EeCCeEeEecCCHHH
Q psy2684          78 LDMKKLFYYKGNFTL   92 (356)
Q Consensus        78 l~~g~~~~~~g~~~~   92 (356)
                      |++|+++.. |+.++
T Consensus       235 l~~G~ive~-g~~~~  248 (331)
T PRK15079        235 MYLGHAVEL-GTYDE  248 (331)
T ss_pred             EECCEEEEE-cCHHH
Confidence            999999874 55544

>KOG0056|consensus

Probab=99.86  E-value=9e-23  Score=193.02  Aligned_cols=143  Identities=32%  Similarity=0.403  Sum_probs=104.1

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      -++++||+|.|+.++++++|+||++.+|..+|++||||+||||++++|.+++...+|.|.++|+|+...           
T Consensus       537 ~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnv-----------  605 (790)
T KOG0056|consen  537 KIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNV-----------  605 (790)
T ss_pred             eEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHH-----------
Confidence            489999999999899999999999999999999999999999999999999999999999999997421           


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHh-------hcCCC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLG-------MFGLP  330 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-~~~~~~~~~~~L~-------~~~l~  330 (356)
                           |                ..+.+..||.||||.  .+|+ .|+..++... ...+.+++.+..+       .++++
T Consensus       606 -----t----------------~~SLRs~IGVVPQDt--vLFN-dTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fP  661 (790)
T KOG0056|consen  606 -----T----------------QSSLRSSIGVVPQDT--VLFN-DTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFP  661 (790)
T ss_pred             -----H----------------HHHHHHhcCcccCcc--eeec-ceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCc
Confidence                 0                011245799999986  3554 4555554321 2233333332221       23343


Q ss_pred             Ccccc---CCCCCCChHHHHHHHHHHHcC
Q psy2684         331 SYAHT---IPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       331 ~~~~~---~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +-...   ..--.|||||||||||||.+|
T Consensus       662 egY~t~VGERGLkLSGGEKQRVAiARtiL  690 (790)
T KOG0056|consen  662 EGYNTRVGERGLKLSGGEKQRVAIARTIL  690 (790)
T ss_pred             hhhhhhhhhcccccCCcchhhHHHHHHHh
Confidence            22111   112469999999999999864

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.86  E-value=2.4e-21  Score=168.27  Aligned_cols=83  Identities=41%  Similarity=0.561  Sum_probs=77.4

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      ++.+.+|||||+||++||++|+.+|++|||||||++||+.+++++.++++++    +.|||+||||++++.++||++++|
T Consensus        92 ~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l  171 (180)
T cd03214          92 DRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILL  171 (180)
T ss_pred             cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            5678999999999999999999999999999999999999999998888765    569999999999999999999999


Q ss_pred             eCCeEeE
Q psy2684          79 DMKKLFY   85 (356)
Q Consensus        79 ~~g~~~~   85 (356)
                      ++|++..
T Consensus       172 ~~g~i~~  178 (180)
T cd03214         172 KDGRIVA  178 (180)
T ss_pred             ECCEEEe
Confidence            9999864

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.86  E-value=2e-21  Score=183.99  Aligned_cols=90  Identities=31%  Similarity=0.552  Sum_probs=80.6

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEEE
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      ++.+.+|||||+||++||+||+.+|++||+||||++||+.++..+.++|++    ++.|||+||||++++.++||+|++|
T Consensus       156 ~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm  235 (330)
T PRK09473        156 KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVM  235 (330)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEE
Confidence            568899999999999999999999999999999999999999887776654    3679999999999999999999999


Q ss_pred             eCCeEeEecCCHHHH
Q psy2684          79 DMKKLFYYKGNFTLF   93 (356)
Q Consensus        79 ~~g~~~~~~g~~~~~   93 (356)
                      ++|++++. |+.+++
T Consensus       236 ~~G~ive~-g~~~~i  249 (330)
T PRK09473        236 YAGRTMEY-GNARDV  249 (330)
T ss_pred             ECCEEEEE-CCHHHH
Confidence            99999875 555443

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=2.4e-21  Score=180.70  Aligned_cols=91  Identities=27%  Similarity=0.353  Sum_probs=82.2

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++|+++    +.|||+||||++++..+||||++
T Consensus       139 ~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~  218 (290)
T PRK13634        139 LARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVV  218 (290)
T ss_pred             hhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            46789999999999999999999999999999999999999999888877654    67999999999999999999999


Q ss_pred             EeCCeEeEecCCHHHH
Q psy2684          78 LDMKKLFYYKGNFTLF   93 (356)
Q Consensus        78 l~~g~~~~~~g~~~~~   93 (356)
                      |++|+++. .|+.+++
T Consensus       219 l~~G~i~~-~g~~~~~  233 (290)
T PRK13634        219 MHKGTVFL-QGTPREI  233 (290)
T ss_pred             EECCEEEE-ECCHHHH
Confidence            99999985 4665543

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.86  E-value=1.4e-21  Score=173.99  Aligned_cols=81  Identities=36%  Similarity=0.537  Sum_probs=75.3

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++|.++   +.|||+||||++++..+||+|++|
T Consensus       128 ~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l  207 (211)
T cd03225         128 RDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVL  207 (211)
T ss_pred             hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            36788999999999999999999999999999999999999999998888765   469999999999999999999999


Q ss_pred             eCCe
Q psy2684          79 DMKK   82 (356)
Q Consensus        79 ~~g~   82 (356)
                      ++|+
T Consensus       208 ~~G~  211 (211)
T cd03225         208 EDGK  211 (211)
T ss_pred             eCCC
Confidence            9874

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=2e-21  Score=179.82  Aligned_cols=91  Identities=27%  Similarity=0.415  Sum_probs=82.3

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++++.+|||||+||++||+||+.+|++|||||||++||+.++.++.++++++   +.|||+||||++++.++||+|++|
T Consensus       132 ~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l  211 (274)
T PRK13647        132 RDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVL  211 (274)
T ss_pred             hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            46789999999999999999999999999999999999999999998888765   579999999999999999999999


Q ss_pred             eCCeEeEecCCHHHH
Q psy2684          79 DMKKLFYYKGNFTLF   93 (356)
Q Consensus        79 ~~g~~~~~~g~~~~~   93 (356)
                      ++|+++.+ |+.+.+
T Consensus       212 ~~G~i~~~-g~~~~~  225 (274)
T PRK13647        212 KEGRVLAE-GDKSLL  225 (274)
T ss_pred             ECCEEEEE-CCHHHh
Confidence            99999864 555443

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.86  E-value=1.6e-21  Score=176.87  Aligned_cols=90  Identities=32%  Similarity=0.451  Sum_probs=81.0

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.+++.++    +.|||+||||++++..+||++++
T Consensus       130 ~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~  209 (239)
T cd03296         130 ADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVV  209 (239)
T ss_pred             hhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            35788999999999999999999999999999999999999999988888764    57999999999999999999999


Q ss_pred             EeCCeEeEecCCHHH
Q psy2684          78 LDMKKLFYYKGNFTL   92 (356)
Q Consensus        78 l~~g~~~~~~g~~~~   92 (356)
                      |++|++.. .|+.+.
T Consensus       210 l~~G~i~~-~~~~~~  223 (239)
T cd03296         210 MNKGRIEQ-VGTPDE  223 (239)
T ss_pred             EECCeEEE-ecCHHH
Confidence            99999975 355443

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.86  E-value=2.4e-21  Score=177.14  Aligned_cols=91  Identities=29%  Similarity=0.443  Sum_probs=83.2

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEeC
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLDM   80 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~   80 (356)
                      ++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++|+++  +.|||+||||++++.++||+|++|++
T Consensus       143 ~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~  222 (252)
T PRK14255        143 HESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLT  222 (252)
T ss_pred             hcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence            5688999999999999999999999999999999999999999999888766  47999999999999999999999999


Q ss_pred             CeEeEecCCHHHH
Q psy2684          81 KKLFYYKGNFTLF   93 (356)
Q Consensus        81 g~~~~~~g~~~~~   93 (356)
                      |+++.++.+.+.|
T Consensus       223 G~i~~~~~~~~~~  235 (252)
T PRK14255        223 GNLIEFADTKQMF  235 (252)
T ss_pred             CEEEEeCCHHHHh
Confidence            9999876555544

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.86  E-value=2.4e-21  Score=178.16  Aligned_cols=91  Identities=29%  Similarity=0.477  Sum_probs=83.3

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||+||++||++|+.+|+||||||||++||+.+++++.++|+++    +.|||+||||++++..+||+|++
T Consensus       146 ~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~  225 (262)
T PRK09984        146 AHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVA  225 (262)
T ss_pred             HhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            36789999999999999999999999999999999999999999998888764    57999999999999999999999


Q ss_pred             EeCCeEeEecCCHHHH
Q psy2684          78 LDMKKLFYYKGNFTLF   93 (356)
Q Consensus        78 l~~g~~~~~~g~~~~~   93 (356)
                      |++|++. +.|+++++
T Consensus       226 l~~g~i~-~~g~~~~~  240 (262)
T PRK09984        226 LRQGHVF-YDGSSQQF  240 (262)
T ss_pred             EECCEEE-EeCCHHHh
Confidence            9999996 46777665

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.86  E-value=3.2e-21  Score=177.23  Aligned_cols=117  Identities=21%  Similarity=0.281  Sum_probs=89.9

Q ss_pred             CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhC
Q psy2684         192 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       192 ~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g  271 (356)
                      .+.+++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.                             
T Consensus        36 ~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~-----------------------------   86 (264)
T PRK13546         36 TFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE-----------------------------   86 (264)
T ss_pred             ceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE-----------------------------
Confidence            346899999999999999999999999999999999999999999988752                             


Q ss_pred             CCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCHHH----HHHHHhhcCCCCccccCCCCCCChH
Q psy2684         272 ELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPYEK----SRRQLGMFGLPSYAHTIPIRDLSGG  344 (356)
Q Consensus       272 ~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~~~----~~~~L~~~~l~~~~~~~~~~~LSGG  344 (356)
                                      +++++|++  .+.+..|+.+++...   .+.+...    +..++..+++..... +++.+||||
T Consensus        87 ----------------~~~~~~~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G  147 (264)
T PRK13546         87 ----------------VSVIAISA--GLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIY-QPVKKYSSG  147 (264)
T ss_pred             ----------------EeEEeccc--CCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-CCcccCCHH
Confidence                            23344443  244567888876431   2333222    345677888876554 478999999


Q ss_pred             HHHHHHHHHHcC
Q psy2684         345 QKARVALAELTL  356 (356)
Q Consensus       345 qkqRvalA~~~l  356 (356)
                      |+|||+||++++
T Consensus       148 q~qrv~Laral~  159 (264)
T PRK13546        148 MRAKLGFSINIT  159 (264)
T ss_pred             HHHHHHHHHHHh
Confidence            999999999974

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.86  E-value=2.1e-21  Score=172.80  Aligned_cols=84  Identities=31%  Similarity=0.420  Sum_probs=77.9

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||+||++||++|+.+|++|||||||++||+.+++++.++++++    +.|||+||||++++..+||++++
T Consensus       122 ~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~  201 (211)
T cd03298         122 EKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVF  201 (211)
T ss_pred             HhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEE
Confidence            35788999999999999999999999999999999999999999988888653    67999999999999999999999


Q ss_pred             EeCCeEeE
Q psy2684          78 LDMKKLFY   85 (356)
Q Consensus        78 l~~g~~~~   85 (356)
                      |++|+++.
T Consensus       202 l~~G~i~~  209 (211)
T cd03298         202 LDNGRIAA  209 (211)
T ss_pred             EECCEEee
Confidence            99999864

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.86  E-value=1.5e-21  Score=174.60  Aligned_cols=83  Identities=33%  Similarity=0.574  Sum_probs=78.0

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEEe
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHLD   79 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l~   79 (356)
                      ++++.+|||||+||++||++|+.+|++|||||||++||+.+++++.++|+++   +.|||+||||.+++..+||++++|+
T Consensus       131 ~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~  210 (218)
T cd03266         131 DRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLH  210 (218)
T ss_pred             hhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEE
Confidence            5778999999999999999999999999999999999999999998888765   5799999999999999999999999


Q ss_pred             CCeEeE
Q psy2684          80 MKKLFY   85 (356)
Q Consensus        80 ~g~~~~   85 (356)
                      +|++..
T Consensus       211 ~G~i~~  216 (218)
T cd03266         211 RGRVVY  216 (218)
T ss_pred             CCEEee
Confidence            999875

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=2.4e-21  Score=182.64  Aligned_cols=91  Identities=27%  Similarity=0.415  Sum_probs=82.3

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++.+.+|||||+||++||++|+.+|++|||||||++||+.++.++.+.|.++   +.|||+||||++++..+||+|++|
T Consensus       170 ~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl  249 (320)
T PRK13631        170 LERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVM  249 (320)
T ss_pred             hcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence            46788999999999999999999999999999999999999999998888654   679999999999999999999999


Q ss_pred             eCCeEeEecCCHHHH
Q psy2684          79 DMKKLFYYKGNFTLF   93 (356)
Q Consensus        79 ~~g~~~~~~g~~~~~   93 (356)
                      ++|+++.. |+.+++
T Consensus       250 ~~G~i~~~-g~~~~~  263 (320)
T PRK13631        250 DKGKILKT-GTPYEI  263 (320)
T ss_pred             ECCEEEEe-CCHHHH
Confidence            99999864 665544

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.86  E-value=2.7e-21  Score=176.58  Aligned_cols=91  Identities=31%  Similarity=0.528  Sum_probs=81.9

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++++++   +.|||+||||.+++.++||++++|
T Consensus       138 ~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l  217 (250)
T PRK11264        138 ETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFM  217 (250)
T ss_pred             hhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence            35788999999999999999999999999999999999999999988887654   679999999999999999999999


Q ss_pred             eCCeEeEecCCHHHH
Q psy2684          79 DMKKLFYYKGNFTLF   93 (356)
Q Consensus        79 ~~g~~~~~~g~~~~~   93 (356)
                      ++|+++. .|+.+++
T Consensus       218 ~~G~i~~-~~~~~~~  231 (250)
T PRK11264        218 DQGRIVE-QGPAKAL  231 (250)
T ss_pred             ECCEEEE-eCCHHHH
Confidence            9999975 4665544

>PLN03211 ABC transporter G-25; Provisional

Probab=99.86  E-value=9.2e-22  Score=201.64  Aligned_cols=137  Identities=28%  Similarity=0.339  Sum_probs=108.0

Q ss_pred             EEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccC--CCceeEeeeccccCcCCeeeeecCC
Q psy2684         181 GLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN--KGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       181 ~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~--~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      .++|+++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+  +|+|.++|.++..            
T Consensus        70 ~~~~l~~~~-~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~------------  136 (659)
T PLN03211         70 KISDETRQI-QERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK------------  136 (659)
T ss_pred             ccccccccC-CCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch------------
Confidence            456788888 5678999999999999999999999999999999999999985  8999999865410            


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc------CCCH----HHHHHHHhhcC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF------NLPY----EKSRRQLGMFG  328 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~------~~~~----~~~~~~L~~~~  328 (356)
                                              ....++||++|+.  .+++..|+.|++....      ....    +.+.++++.+|
T Consensus       137 ------------------------~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lg  190 (659)
T PLN03211        137 ------------------------QILKRTGFVTQDD--ILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELG  190 (659)
T ss_pred             ------------------------hhccceEEECccc--ccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcC
Confidence                                    0123589999985  4778899999875321      1222    23567899999


Q ss_pred             CCCccc----cCCCCCCChHHHHHHHHHHHcC
Q psy2684         329 LPSYAH----TIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       329 l~~~~~----~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +.+..+    +.++..|||||||||+||++++
T Consensus       191 L~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~  222 (659)
T PLN03211        191 LTKCENTIIGNSFIRGISGGERKRVSIAHEML  222 (659)
T ss_pred             ChhhcCceeCCCCCCCcChhhhhHHHHHHHHH
Confidence            976432    2356789999999999999874

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.86  E-value=4.2e-22  Score=219.04  Aligned_cols=143  Identities=24%  Similarity=0.353  Sum_probs=107.6

Q ss_pred             cEEEecceeeeCCC--ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEe-eeccccCcCCeeeee
Q psy2684         179 VLGLHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE-KVNFGLDMESRVALV  255 (356)
Q Consensus       179 ~l~~~~l~~~~~~~--~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~-g~~~~~~~~~~ialv  255 (356)
                      -++++||++.|++.  .++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++ |.++...        
T Consensus       382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~--------  453 (1466)
T PTZ00265        382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDI--------  453 (1466)
T ss_pred             cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhC--------
Confidence            48999999999642  369999999999999999999999999999999999999999999995 4554200        


Q ss_pred             cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc----------------------
Q psy2684         256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF----------------------  313 (356)
Q Consensus       256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~----------------------  313 (356)
                                             .. ...+.+|||++|++  .+|+ .|+.+++....                      
T Consensus       454 -----------------------~~-~~lr~~Ig~V~Q~~--~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~  506 (1466)
T PTZ00265        454 -----------------------NL-KWWRSKIGVVSQDP--LLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQE  506 (1466)
T ss_pred             -----------------------CH-HHHHHhccEecccc--cchh-ccHHHHHHhcCCCccccchhccccccccccccc
Confidence                                   00 01135699999987  3665 58999875421                      


Q ss_pred             ------------------------------------CCCHHHHHHHHhhcCCCCcc----------ccCCCCCCChHHHH
Q psy2684         314 ------------------------------------NLPYEKSRRQLGMFGLPSYA----------HTIPIRDLSGGQKA  347 (356)
Q Consensus       314 ------------------------------------~~~~~~~~~~L~~~~l~~~~----------~~~~~~~LSGGqkq  347 (356)
                                                          ..+.+++.++++.+++....          .......|||||||
T Consensus       507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQ  586 (1466)
T PTZ00265        507 NKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQ  586 (1466)
T ss_pred             cccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHH
Confidence                                                11234566777777664321          12245789999999


Q ss_pred             HHHHHHHcC
Q psy2684         348 RVALAELTL  356 (356)
Q Consensus       348 RvalA~~~l  356 (356)
                      |++|||+++
T Consensus       587 RiaIARAll  595 (1466)
T PTZ00265        587 RISIARAII  595 (1466)
T ss_pred             HHHHHHHHh
Confidence            999999975

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.86  E-value=1.6e-21  Score=173.28  Aligned_cols=83  Identities=35%  Similarity=0.441  Sum_probs=77.5

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEEe
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHLD   79 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l~   79 (356)
                      ++++.+|||||+||++||++|+.+|++|||||||++||+.+++++.++++++   +.|||+||||.+++..+||++++|+
T Consensus       121 ~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~  200 (208)
T cd03268         121 KKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIIN  200 (208)
T ss_pred             hhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEE
Confidence            5778999999999999999999999999999999999999999988888764   5799999999999999999999999


Q ss_pred             CCeEeE
Q psy2684          80 MKKLFY   85 (356)
Q Consensus        80 ~g~~~~   85 (356)
                      +|+++.
T Consensus       201 ~g~i~~  206 (208)
T cd03268         201 KGKLIE  206 (208)
T ss_pred             CCEEEe
Confidence            999864

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.86  E-value=1.6e-21  Score=174.03  Aligned_cols=80  Identities=34%  Similarity=0.530  Sum_probs=74.9

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEEe
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHLD   79 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l~   79 (356)
                      ++.+.+|||||+||++||++|+.+|++|||||||++||+.++.++.++++++   +.|||+||||.+++..+||++++|+
T Consensus       132 ~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~  211 (214)
T TIGR02673       132 DAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILD  211 (214)
T ss_pred             hCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEec
Confidence            5678999999999999999999999999999999999999999998888764   6799999999999999999999999


Q ss_pred             CCe
Q psy2684          80 MKK   82 (356)
Q Consensus        80 ~g~   82 (356)
                      +|+
T Consensus       212 ~G~  214 (214)
T TIGR02673       212 DGR  214 (214)
T ss_pred             CCC
Confidence            874

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=2.3e-21  Score=184.73  Aligned_cols=90  Identities=28%  Similarity=0.463  Sum_probs=81.3

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+||||||||++||++|+.+|++|||||||++||+.++.++.++|+++    +.|||+||||++++.++||+|++
T Consensus       134 ~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~  213 (343)
T PRK11153        134 ADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAV  213 (343)
T ss_pred             hhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            36788999999999999999999999999999999999999999988888764    57999999999999999999999


Q ss_pred             EeCCeEeEecCCHHH
Q psy2684          78 LDMKKLFYYKGNFTL   92 (356)
Q Consensus        78 l~~g~~~~~~g~~~~   92 (356)
                      |++|+++.. |..++
T Consensus       214 l~~G~i~~~-g~~~~  227 (343)
T PRK11153        214 IDAGRLVEQ-GTVSE  227 (343)
T ss_pred             EECCEEEEE-cCHHH
Confidence            999999854 55433

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.86  E-value=2.3e-21  Score=184.97  Aligned_cols=90  Identities=32%  Similarity=0.442  Sum_probs=80.8

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||+||++||+||+.+|++|||||||++||+..+..+.+.|++    .+.|+|+||||++++..+||+|++
T Consensus       130 ~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~v  209 (353)
T PRK10851        130 ADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVV  209 (353)
T ss_pred             hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            4788999999999999999999999999999999999999998887776654    368999999999999999999999


Q ss_pred             EeCCeEeEecCCHHH
Q psy2684          78 LDMKKLFYYKGNFTL   92 (356)
Q Consensus        78 l~~g~~~~~~g~~~~   92 (356)
                      |++|+++.+ |..++
T Consensus       210 l~~G~i~~~-g~~~~  223 (353)
T PRK10851        210 MSQGNIEQA-GTPDQ  223 (353)
T ss_pred             EECCEEEEE-cCHHH
Confidence            999999875 55443

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.86  E-value=1.3e-21  Score=175.09  Aligned_cols=80  Identities=35%  Similarity=0.500  Sum_probs=74.3

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      ++.+.+|||||+||++||++|+.+|++|||||||++||+.++.++.++++++    +.|||+||||.+++. +||++++|
T Consensus       135 ~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l  213 (218)
T cd03255         135 NHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIEL  213 (218)
T ss_pred             hcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEe
Confidence            5788999999999999999999999999999999999999999988888764    579999999999997 99999999


Q ss_pred             eCCeE
Q psy2684          79 DMKKL   83 (356)
Q Consensus        79 ~~g~~   83 (356)
                      ++|++
T Consensus       214 ~~G~i  218 (218)
T cd03255         214 RDGKI  218 (218)
T ss_pred             eCCcC
Confidence            99864

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=2.5e-21  Score=180.54  Aligned_cols=90  Identities=29%  Similarity=0.388  Sum_probs=80.9

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++|+++    +.|||+||||++++.++||++++
T Consensus       144 ~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~  223 (289)
T PRK13645        144 VKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIV  223 (289)
T ss_pred             hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEE
Confidence            36788999999999999999999999999999999999999999988877654    67999999999999999999999


Q ss_pred             EeCCeEeEecCCHHH
Q psy2684          78 LDMKKLFYYKGNFTL   92 (356)
Q Consensus        78 l~~g~~~~~~g~~~~   92 (356)
                      |++|+++.. |+.+.
T Consensus       224 l~~G~i~~~-g~~~~  237 (289)
T PRK13645        224 MHEGKVISI-GSPFE  237 (289)
T ss_pred             EECCEEEEe-CCHHH
Confidence            999999865 55443

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.86  E-value=1.3e-22  Score=168.12  Aligned_cols=151  Identities=27%  Similarity=0.423  Sum_probs=112.5

Q ss_pred             cEEEecceeeeC----CC--ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCee
Q psy2684         179 VLGLHDVTFGYP----GG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRV  252 (356)
Q Consensus       179 ~l~~~~l~~~~~----~~--~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~i  252 (356)
                      .+.++|+++.|-    ++  -++++++||+|+.||++++-||||+|||||+++|.+-|.|++|.|.+....-.+.     
T Consensus         4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vd-----   78 (235)
T COG4778           4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVD-----   78 (235)
T ss_pred             eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhh-----
Confidence            477888888773    23  2689999999999999999999999999999999999999999999976432110     


Q ss_pred             eeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHh
Q psy2684         253 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLG  325 (356)
Q Consensus       253 alvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~  325 (356)
                       ++.                ..|  .++..-++..|||+.|..  ...|.-...+.++..   .+.+.    ..++.+|.
T Consensus        79 -l~~----------------a~p--r~vl~vRr~TiGyVSQFL--RviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~  137 (235)
T COG4778          79 -LVT----------------AEP--REVLEVRRTTIGYVSQFL--RVIPRVSALDVVAEPLLARGVPREVARAKAADLLT  137 (235)
T ss_pred             -hhc----------------cCh--HHHHHHHHhhhHHHHHHH--HhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHH
Confidence             000                000  111112345699999974  355666656655432   34433    45678999


Q ss_pred             hcCCCCccccCCCCCCChHHHHHHHHHHHc
Q psy2684         326 MFGLPSYAHTIPIRDLSGGQKARVALAELT  355 (356)
Q Consensus       326 ~~~l~~~~~~~~~~~LSGGqkqRvalA~~~  355 (356)
                      +++++...+.-+|.++||||||||-|||.+
T Consensus       138 rLnlperLW~LaPaTFSGGEqQRVNIaRgf  167 (235)
T COG4778         138 RLNLPERLWSLAPATFSGGEQQRVNIARGF  167 (235)
T ss_pred             HcCCCHHHhcCCCcccCCchheehhhhhhh
Confidence            999999888889999999999999999975

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.86  E-value=2.6e-21  Score=177.17  Aligned_cols=83  Identities=34%  Similarity=0.464  Sum_probs=77.4

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      ++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++|+++    +.|||+||||++++..+||+|++|
T Consensus       128 ~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l  207 (257)
T PRK11247        128 NEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLI  207 (257)
T ss_pred             cCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            6788999999999999999999999999999999999999998888777653    689999999999999999999999


Q ss_pred             eCCeEeE
Q psy2684          79 DMKKLFY   85 (356)
Q Consensus        79 ~~g~~~~   85 (356)
                      ++|+++.
T Consensus       208 ~~G~i~~  214 (257)
T PRK11247        208 EEGKIGL  214 (257)
T ss_pred             ECCEEEe
Confidence            9999975

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=3e-21  Score=179.77  Aligned_cols=91  Identities=27%  Similarity=0.388  Sum_probs=82.4

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++++.+||||||||++||++|+.+|++|||||||++||+.++.++.++|+++   +.|||+||||++++..+||++++|
T Consensus       139 ~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l  218 (287)
T PRK13641        139 ISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVL  218 (287)
T ss_pred             hhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            46889999999999999999999999999999999999999999998888765   479999999999999999999999


Q ss_pred             eCCeEeEecCCHHHH
Q psy2684          79 DMKKLFYYKGNFTLF   93 (356)
Q Consensus        79 ~~g~~~~~~g~~~~~   93 (356)
                      ++|+++. .|..+.+
T Consensus       219 ~~G~i~~-~g~~~~~  232 (287)
T PRK13641        219 EHGKLIK-HASPKEI  232 (287)
T ss_pred             ECCEEEE-eCCHHHH
Confidence            9999975 4655543

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.86  E-value=3.3e-21  Score=177.88  Aligned_cols=91  Identities=30%  Similarity=0.377  Sum_probs=81.7

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++.+.+|||||+||++||++|+.+|++|||||||++||+.++.++.+++.++    +.|||++|||++++.++||++++
T Consensus       154 ~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~  233 (269)
T cd03294         154 EHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAI  233 (269)
T ss_pred             hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE
Confidence            36788999999999999999999999999999999999999999988887654    57999999999999999999999


Q ss_pred             EeCCeEeEecCCHHHH
Q psy2684          78 LDMKKLFYYKGNFTLF   93 (356)
Q Consensus        78 l~~g~~~~~~g~~~~~   93 (356)
                      |++|++..+ |+.+.+
T Consensus       234 l~~G~i~~~-g~~~~~  248 (269)
T cd03294         234 MKDGRLVQV-GTPEEI  248 (269)
T ss_pred             EECCEEEEe-CCHHHH
Confidence            999999864 555443

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.86  E-value=2.8e-21  Score=178.64  Aligned_cols=91  Identities=25%  Similarity=0.344  Sum_probs=82.1

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++|+++   +.|||+||||.+++..+||++++|
T Consensus       130 ~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l  209 (271)
T PRK13638        130 RHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVL  209 (271)
T ss_pred             hcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            36788999999999999999999999999999999999999999998888765   579999999999999999999999


Q ss_pred             eCCeEeEecCCHHHH
Q psy2684          79 DMKKLFYYKGNFTLF   93 (356)
Q Consensus        79 ~~g~~~~~~g~~~~~   93 (356)
                      ++|+++.. |+.+++
T Consensus       210 ~~G~i~~~-g~~~~~  223 (271)
T PRK13638        210 RQGQILTH-GAPGEV  223 (271)
T ss_pred             ECCEEEEe-CCHHHH
Confidence            99999864 555443

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.85  E-value=1.9e-21  Score=173.36  Aligned_cols=81  Identities=35%  Similarity=0.475  Sum_probs=75.0

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++++++   +.|||+||||++++.++||++++|
T Consensus       126 ~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l  205 (213)
T cd03235         126 ADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLL  205 (213)
T ss_pred             HhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence            36788999999999999999999999999999999999999999998888765   479999999999999999999999


Q ss_pred             eCCe
Q psy2684          79 DMKK   82 (356)
Q Consensus        79 ~~g~   82 (356)
                      ++|.
T Consensus       206 ~~~~  209 (213)
T cd03235         206 NRTV  209 (213)
T ss_pred             cCcE
Confidence            8863

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.85  E-value=2.9e-21  Score=186.48  Aligned_cols=91  Identities=31%  Similarity=0.419  Sum_probs=82.6

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++++.+||||||||++||++|+++|++|||||||++||+.++..+.++|+++   +.|||++|||++++.++|||+++|
T Consensus       133 ~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l  212 (402)
T PRK09536        133 ADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLL  212 (402)
T ss_pred             hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence            47889999999999999999999999999999999999999998888877765   579999999999999999999999


Q ss_pred             eCCeEeEecCCHHHH
Q psy2684          79 DMKKLFYYKGNFTLF   93 (356)
Q Consensus        79 ~~g~~~~~~g~~~~~   93 (356)
                      ++|+++. .|+.+++
T Consensus       213 ~~G~iv~-~G~~~ev  226 (402)
T PRK09536        213 ADGRVRA-AGPPADV  226 (402)
T ss_pred             ECCEEEE-ecCHHHH
Confidence            9999986 4666544

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.85  E-value=2.6e-21  Score=185.69  Aligned_cols=87  Identities=28%  Similarity=0.377  Sum_probs=79.8

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++.+.+|||||+|||+|||+|+.+|++|||||||++||+..+.+|.+.|++    .+.|+|+||||.+++..+||+|++
T Consensus       138 ~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~v  217 (375)
T PRK09452        138 AQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVV  217 (375)
T ss_pred             hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            4788999999999999999999999999999999999999999887776654    478999999999999999999999


Q ss_pred             EeCCeEeEecC
Q psy2684          78 LDMKKLFYYKG   88 (356)
Q Consensus        78 l~~g~~~~~~g   88 (356)
                      |++|++...+.
T Consensus       218 l~~G~i~~~g~  228 (375)
T PRK09452        218 MRDGRIEQDGT  228 (375)
T ss_pred             EECCEEEEEcC
Confidence            99999987643

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.85  E-value=3.1e-21  Score=180.85  Aligned_cols=91  Identities=32%  Similarity=0.536  Sum_probs=84.1

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEe
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLD   79 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~   79 (356)
                      .++.+..|||||+||++||++|+.+|++|||||||++||+.+++++.++++++  +.|||++||+++++.++||||++|+
T Consensus       127 ~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~  206 (301)
T TIGR03522       127 QHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIIN  206 (301)
T ss_pred             hcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEE
Confidence            36789999999999999999999999999999999999999999999988877  5799999999999999999999999


Q ss_pred             CCeEeEecCCHHHH
Q psy2684          80 MKKLFYYKGNFTLF   93 (356)
Q Consensus        80 ~g~~~~~~g~~~~~   93 (356)
                      +|++.. .|+.+++
T Consensus       207 ~G~i~~-~g~~~~~  219 (301)
T TIGR03522       207 KGKIVA-DKKLDEL  219 (301)
T ss_pred             CCEEEE-eCCHHHH
Confidence            999984 6776654

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=4.3e-21  Score=173.38  Aligned_cols=92  Identities=29%  Similarity=0.338  Sum_probs=82.6

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||+||++||++|+.+|++|||||||++||+.+++.+.++|+++    +.|||+||||++++..+||++++
T Consensus       123 ~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~  202 (232)
T PRK10771        123 LARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLV  202 (232)
T ss_pred             HhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence            36788999999999999999999999999999999999999998887777653    57999999999999999999999


Q ss_pred             EeCCeEeEecCCHHHHH
Q psy2684          78 LDMKKLFYYKGNFTLFK   94 (356)
Q Consensus        78 l~~g~~~~~~g~~~~~~   94 (356)
                      |++|++.. .|+++.+.
T Consensus       203 l~~g~i~~-~g~~~~~~  218 (232)
T PRK10771        203 VADGRIAW-DGPTDELL  218 (232)
T ss_pred             EECCEEEE-eCCHHHHH
Confidence            99999974 57776654

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.85  E-value=3.1e-21  Score=174.22  Aligned_cols=91  Identities=27%  Similarity=0.330  Sum_probs=81.5

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++++.+|||||+||++||++|+.+|++|||||||++||+.+++++.++++++   +.|||+||||++++.++||++++|
T Consensus       127 ~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l  206 (232)
T cd03218         127 RKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYII  206 (232)
T ss_pred             hhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            36788999999999999999999999999999999999999999988877654   579999999999999999999999


Q ss_pred             eCCeEeEecCCHHHH
Q psy2684          79 DMKKLFYYKGNFTLF   93 (356)
Q Consensus        79 ~~g~~~~~~g~~~~~   93 (356)
                      ++|++.. .|+.+.+
T Consensus       207 ~~G~i~~-~~~~~~~  220 (232)
T cd03218         207 YEGKVLA-EGTPEEI  220 (232)
T ss_pred             ECCeEEE-EeCHHHh
Confidence            9999974 4655443

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.85  E-value=2.4e-21  Score=172.34  Aligned_cols=84  Identities=27%  Similarity=0.517  Sum_probs=78.1

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEEe
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHLD   79 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l~   79 (356)
                      ++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.+.++++   +.|||+||||.+++.++||++++|+
T Consensus       123 ~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~  202 (210)
T cd03269         123 NKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLN  202 (210)
T ss_pred             hCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEe
Confidence            5678999999999999999999999999999999999999999998888765   5799999999999999999999999


Q ss_pred             CCeEeEe
Q psy2684          80 MKKLFYY   86 (356)
Q Consensus        80 ~g~~~~~   86 (356)
                      +|++..+
T Consensus       203 ~g~i~~~  209 (210)
T cd03269         203 KGRAVLY  209 (210)
T ss_pred             CCEEEec
Confidence            9998753

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=4.2e-21  Score=175.38  Aligned_cols=90  Identities=23%  Similarity=0.427  Sum_probs=81.8

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEeC
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLDM   80 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~   80 (356)
                      ++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++|+++  +.|||+||||++++.++||++++|++
T Consensus       141 ~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~  220 (250)
T PRK14245        141 KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYM  220 (250)
T ss_pred             hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEEC
Confidence            5678999999999999999999999999999999999999999999888875  47999999999999999999999999


Q ss_pred             CeEeEecCCHHHH
Q psy2684          81 KKLFYYKGNFTLF   93 (356)
Q Consensus        81 g~~~~~~g~~~~~   93 (356)
                      |+++.+ |+.+++
T Consensus       221 G~~~~~-~~~~~~  232 (250)
T PRK14245        221 GEMVEY-DDTKKI  232 (250)
T ss_pred             CEEEEE-CCHHHH
Confidence            999854 555544

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.85  E-value=3.9e-21  Score=173.72  Aligned_cols=90  Identities=26%  Similarity=0.428  Sum_probs=81.1

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++++++    +.|||+||||.+++..+||++++
T Consensus       134 ~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~  213 (233)
T cd03258         134 ADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAV  213 (233)
T ss_pred             hhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            35788999999999999999999999999999999999999999988888754    57999999999999999999999


Q ss_pred             EeCCeEeEecCCHHH
Q psy2684          78 LDMKKLFYYKGNFTL   92 (356)
Q Consensus        78 l~~g~~~~~~g~~~~   92 (356)
                      |++|+++. .|+.++
T Consensus       214 l~~G~i~~-~~~~~~  227 (233)
T cd03258         214 MEKGEVVE-EGTVEE  227 (233)
T ss_pred             EECCEEEE-ecCHHH
Confidence            99999985 355443

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.85  E-value=3.5e-21  Score=176.10  Aligned_cols=89  Identities=28%  Similarity=0.337  Sum_probs=81.2

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEeC
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLDM   80 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~   80 (356)
                      ++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++|+++  +.|||+||||++++..+||+|++|++
T Consensus       143 ~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~  222 (252)
T PRK14239        143 HDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLD  222 (252)
T ss_pred             hcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEEC
Confidence            5788999999999999999999999999999999999999999999888865  47999999999999999999999999


Q ss_pred             CeEeEecCCHHH
Q psy2684          81 KKLFYYKGNFTL   92 (356)
Q Consensus        81 g~~~~~~g~~~~   92 (356)
                      |++..+ |..++
T Consensus       223 G~i~~~-g~~~~  233 (252)
T PRK14239        223 GDLIEY-NDTKQ  233 (252)
T ss_pred             CEEEEe-CCHHH
Confidence            999865 44433

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.85  E-value=3.7e-21  Score=174.68  Aligned_cols=91  Identities=30%  Similarity=0.498  Sum_probs=82.6

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++.+.+|||||+||++||++|+.+|++|||||||++||+.++.++.++++++   +.|||+||||++++..+||++++|
T Consensus       130 ~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l  209 (240)
T PRK09493        130 AHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFI  209 (240)
T ss_pred             HhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            36788999999999999999999999999999999999999999988888754   579999999999999999999999


Q ss_pred             eCCeEeEecCCHHHH
Q psy2684          79 DMKKLFYYKGNFTLF   93 (356)
Q Consensus        79 ~~g~~~~~~g~~~~~   93 (356)
                      ++|+++. .|+++++
T Consensus       210 ~~G~i~~-~g~~~~~  223 (240)
T PRK09493        210 DKGRIAE-DGDPQVL  223 (240)
T ss_pred             ECCEEEe-eCCHHHH
Confidence            9999985 4666654

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.85  E-value=2.1e-21  Score=173.12  Aligned_cols=81  Identities=33%  Similarity=0.505  Sum_probs=75.6

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEEe
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHLD   79 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l~   79 (356)
                      ++++.+|||||+||++||++|+.+|++|||||||++||+.+++++.+.++++   +.|||+||||.+++..+||++++|+
T Consensus       131 ~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~  210 (214)
T cd03292         131 RALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALE  210 (214)
T ss_pred             hCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence            5778999999999999999999999999999999999999999998888765   5799999999999999999999999


Q ss_pred             CCeE
Q psy2684          80 MKKL   83 (356)
Q Consensus        80 ~g~~   83 (356)
                      +|++
T Consensus       211 ~G~~  214 (214)
T cd03292         211 RGKL  214 (214)
T ss_pred             CCcC
Confidence            9864

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=3.3e-21  Score=185.22  Aligned_cols=87  Identities=32%  Similarity=0.402  Sum_probs=78.8

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH----HHHhcCcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDN----YLQTWKKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~----~l~~~~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++.+.+|||||+|||+||++|+.+|++|||||||++||+..+.++.+    ++++++.|+|+||||.+++..+||+|++
T Consensus       143 ~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~v  222 (377)
T PRK11607        143 AKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAI  222 (377)
T ss_pred             hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEE
Confidence            478899999999999999999999999999999999999999877664    4445678999999999999999999999


Q ss_pred             EeCCeEeEecC
Q psy2684          78 LDMKKLFYYKG   88 (356)
Q Consensus        78 l~~g~~~~~~g   88 (356)
                      |++|++..++.
T Consensus       223 l~~G~i~~~g~  233 (377)
T PRK11607        223 MNRGKFVQIGE  233 (377)
T ss_pred             EeCCEEEEEcC
Confidence            99999987643

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.85  E-value=5.6e-22  Score=170.30  Aligned_cols=144  Identities=27%  Similarity=0.335  Sum_probs=108.9

Q ss_pred             EEEecceeeeCC----CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684         180 LGLHDVTFGYPG----GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV  255 (356)
Q Consensus       180 l~~~~l~~~~~~----~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv  255 (356)
                      +++.|+.+.|..    .+++|+++|++|++|+++.|+|.||||||||+++++|.+.|++|.|.++|+++...+.      
T Consensus         2 i~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~------   75 (263)
T COG1101           2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSV------   75 (263)
T ss_pred             cccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCH------
Confidence            455666665533    3579999999999999999999999999999999999999999999999998752210      


Q ss_pred             cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh--c----CCC----H---HHHHH
Q psy2684         256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL--F----NLP----Y---EKSRR  322 (356)
Q Consensus       256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~--~----~~~----~---~~~~~  322 (356)
                                                ..+...++-|||+|....++++|+.|++.-.  .    ++.    .   +..++
T Consensus        76 --------------------------~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~  129 (263)
T COG1101          76 --------------------------AKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRE  129 (263)
T ss_pred             --------------------------HHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHH
Confidence                                      1112346778999988889999999998532  1    121    1   22344


Q ss_pred             HHhhcC--CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         323 QLGMFG--LPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       323 ~L~~~~--l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .++.++  |.+.... ++.-|||||||-|+|+.+.+
T Consensus       130 ~l~~l~lgLenrL~~-~iglLSGGQRQalsL~MAtl  164 (263)
T COG1101         130 RLARLGLGLENRLSD-RIGLLSGGQRQALSLLMATL  164 (263)
T ss_pred             HHhhcccchhhhhcC-hhhhccchHHHHHHHHHHhc
Confidence            566654  4555554 78999999999999998754

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=3.9e-21  Score=178.93  Aligned_cols=90  Identities=23%  Similarity=0.383  Sum_probs=81.9

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      ++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++++++    +.|||+||||++++.++||+|++|
T Consensus       140 ~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l  219 (286)
T PRK13646        140 SQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVM  219 (286)
T ss_pred             hCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence            5789999999999999999999999999999999999999999998888754    579999999999999999999999


Q ss_pred             eCCeEeEecCCHHHH
Q psy2684          79 DMKKLFYYKGNFTLF   93 (356)
Q Consensus        79 ~~g~~~~~~g~~~~~   93 (356)
                      ++|+++. .|..+++
T Consensus       220 ~~G~i~~-~g~~~~~  233 (286)
T PRK13646        220 KEGSIVS-QTSPKEL  233 (286)
T ss_pred             ECCEEEE-ECCHHHH
Confidence            9999985 4665543

>PRK10908 cell division protein FtsE; Provisional

Probab=99.85  E-value=3.5e-21  Score=172.79  Aligned_cols=83  Identities=28%  Similarity=0.388  Sum_probs=77.1

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEEe
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHLD   79 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l~   79 (356)
                      ++++.+|||||+||++||++|+.+|++|||||||++||+.+++.+.+.++++   +.|||+||||.+++..+||+|++|+
T Consensus       132 ~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~  211 (222)
T PRK10908        132 KNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLS  211 (222)
T ss_pred             hCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            5788999999999999999999999999999999999999998888777754   5799999999999999999999999


Q ss_pred             CCeEeE
Q psy2684          80 MKKLFY   85 (356)
Q Consensus        80 ~g~~~~   85 (356)
                      +|+++.
T Consensus       212 ~G~i~~  217 (222)
T PRK10908        212 DGHLHG  217 (222)
T ss_pred             CCEEcc
Confidence            999864

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.85  E-value=4.5e-21  Score=174.34  Aligned_cols=90  Identities=28%  Similarity=0.427  Sum_probs=80.7

Q ss_pred             CCCCC-cCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhh-cCEEEE
Q psy2684           3 EKSTK-EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNI-CTDIIH   77 (356)
Q Consensus         3 ~~~~~-~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~-~~~i~~   77 (356)
                      ++++. +||||||||++||++|+.+|++|||||||++||+.++.++.++|+++   +.|||+||||++++..+ ||++++
T Consensus       138 ~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~  217 (243)
T TIGR01978       138 NRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHV  217 (243)
T ss_pred             ccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEE
Confidence            46666 59999999999999999999999999999999999999999988876   57999999999999998 899999


Q ss_pred             EeCCeEeEecCCHHHH
Q psy2684          78 LDMKKLFYYKGNFTLF   93 (356)
Q Consensus        78 l~~g~~~~~~g~~~~~   93 (356)
                      |++|++.. .|+.+.+
T Consensus       218 l~~G~i~~-~g~~~~~  232 (243)
T TIGR01978       218 LLDGRIVK-SGDVELA  232 (243)
T ss_pred             EeCCEEEE-ecCHHHh
Confidence            99999975 5666543

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.85  E-value=3.9e-21  Score=181.88  Aligned_cols=90  Identities=32%  Similarity=0.412  Sum_probs=81.2

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++.+.+||||||||++||++|+.+|++|||||||++||+.++.++.+.|+++    +.|||+||||++++..+||+|++
T Consensus        94 ~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~v  173 (325)
T TIGR01187        94 ADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAI  173 (325)
T ss_pred             hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            46889999999999999999999999999999999999999999888777653    67999999999999999999999


Q ss_pred             EeCCeEeEecCCHHH
Q psy2684          78 LDMKKLFYYKGNFTL   92 (356)
Q Consensus        78 l~~g~~~~~~g~~~~   92 (356)
                      |++|++... |+.++
T Consensus       174 l~~G~i~~~-g~~~~  187 (325)
T TIGR01187       174 MRKGKIAQI-GTPEE  187 (325)
T ss_pred             EECCEEEEE-cCHHH
Confidence            999999864 55543

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.85  E-value=3e-21  Score=173.04  Aligned_cols=82  Identities=34%  Similarity=0.537  Sum_probs=75.0

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||+||++||++|+.+|++|||||||++||+.++..+.+.|+++    +.|||+||||.+++.. ||++++
T Consensus       135 ~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~  213 (221)
T TIGR02211       135 INHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLE  213 (221)
T ss_pred             hhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEE
Confidence            36788999999999999999999999999999999999999999988888653    6799999999999965 799999


Q ss_pred             EeCCeEe
Q psy2684          78 LDMKKLF   84 (356)
Q Consensus        78 l~~g~~~   84 (356)
                      |++|+++
T Consensus       214 l~~G~i~  220 (221)
T TIGR02211       214 MKDGQLF  220 (221)
T ss_pred             EeCCEec
Confidence            9999874

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=4e-21  Score=174.64  Aligned_cols=91  Identities=26%  Similarity=0.477  Sum_probs=82.8

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++.+.+|||||+||++||++|+.+|++|||||||++||+.++.++.++++++   +.|||+||||.+++.++||++++|
T Consensus       135 ~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l  214 (242)
T PRK11124        135 ADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYM  214 (242)
T ss_pred             hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence            36778999999999999999999999999999999999999999998888754   679999999999999999999999


Q ss_pred             eCCeEeEecCCHHHH
Q psy2684          79 DMKKLFYYKGNFTLF   93 (356)
Q Consensus        79 ~~g~~~~~~g~~~~~   93 (356)
                      ++|++.. .|+++.+
T Consensus       215 ~~g~i~~-~~~~~~~  228 (242)
T PRK11124        215 ENGHIVE-QGDASCF  228 (242)
T ss_pred             ECCEEEE-eCCHHHh
Confidence            9999974 5777655

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.85  E-value=4.5e-21  Score=183.01  Aligned_cols=91  Identities=30%  Similarity=0.396  Sum_probs=81.9

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+||||||||++||+||+.+|++|||||||++||+.++.++.+.+.++    +.|||+||||++++..+||+|++
T Consensus       123 ~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~v  202 (363)
T TIGR01186       123 EHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVI  202 (363)
T ss_pred             hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            46889999999999999999999999999999999999999999988777643    68999999999999999999999


Q ss_pred             EeCCeEeEecCCHHHH
Q psy2684          78 LDMKKLFYYKGNFTLF   93 (356)
Q Consensus        78 l~~g~~~~~~g~~~~~   93 (356)
                      |++|+++.. |..+.+
T Consensus       203 l~~G~iv~~-g~~~ei  217 (363)
T TIGR01186       203 MKAGEIVQV-GTPDEI  217 (363)
T ss_pred             EeCCEEEee-CCHHHH
Confidence            999999864 555544

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.85  E-value=1.6e-21  Score=163.07  Aligned_cols=61  Identities=41%  Similarity=0.762  Sum_probs=56.3

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEee
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK  241 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g  241 (356)
                      ++++|+++.| ++..+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus         1 l~~~~l~~~~-~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~   61 (144)
T cd03221           1 IELENLSKTY-GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGS   61 (144)
T ss_pred             CEEEEEEEEE-CCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECC
Confidence            4688999999 445799999999999999999999999999999999999999999998874

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=4.7e-21  Score=176.83  Aligned_cols=90  Identities=23%  Similarity=0.381  Sum_probs=82.0

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEeC
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLDM   80 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~   80 (356)
                      ++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++++++  +.|||++|||++++..+||+|++|++
T Consensus       159 ~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~  238 (268)
T PRK14248        159 HSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLN  238 (268)
T ss_pred             hcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEEC
Confidence            5788999999999999999999999999999999999999999999988876  47999999999999999999999999


Q ss_pred             CeEeEecCCHHHH
Q psy2684          81 KKLFYYKGNFTLF   93 (356)
Q Consensus        81 g~~~~~~g~~~~~   93 (356)
                      |+++.+ |+.+++
T Consensus       239 G~i~~~-~~~~~~  250 (268)
T PRK14248        239 GDLVEY-DQTEQI  250 (268)
T ss_pred             CEEEEe-CCHHHH
Confidence            999864 555443

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.85  E-value=4.5e-21  Score=174.33  Aligned_cols=89  Identities=30%  Similarity=0.390  Sum_probs=80.8

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      ++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.+.|+++    +.|||+||||.+++..+||+|++|
T Consensus       130 ~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l  209 (242)
T cd03295         130 DRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIM  209 (242)
T ss_pred             hcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEE
Confidence            6788999999999999999999999999999999999999999988888764    679999999999999999999999


Q ss_pred             eCCeEeEecCCHHH
Q psy2684          79 DMKKLFYYKGNFTL   92 (356)
Q Consensus        79 ~~g~~~~~~g~~~~   92 (356)
                      ++|+++.. |+.+.
T Consensus       210 ~~G~i~~~-~~~~~  222 (242)
T cd03295         210 KNGEIVQV-GTPDE  222 (242)
T ss_pred             ECCEEEEe-cCHHH
Confidence            99999854 55443

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.85  E-value=5e-21  Score=175.18  Aligned_cols=90  Identities=29%  Similarity=0.436  Sum_probs=81.7

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEeC
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLDM   80 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~   80 (356)
                      ++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++|+++  +.|||+||||.+++.++||+|++|++
T Consensus       144 ~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~  223 (253)
T PRK14242        144 HESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYM  223 (253)
T ss_pred             hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEEC
Confidence            6778999999999999999999999999999999999999999999988875  47999999999999999999999999


Q ss_pred             CeEeEecCCHHHH
Q psy2684          81 KKLFYYKGNFTLF   93 (356)
Q Consensus        81 g~~~~~~g~~~~~   93 (356)
                      |++... |..+.+
T Consensus       224 G~i~~~-g~~~~~  235 (253)
T PRK14242        224 GKLIEV-GPTEQI  235 (253)
T ss_pred             CEEEEe-CCHHHH
Confidence            999754 555443

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=3.7e-21  Score=176.15  Aligned_cols=84  Identities=32%  Similarity=0.436  Sum_probs=77.7

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++|+++    +.|||+||||++++..+||+|++
T Consensus       122 ~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~  201 (255)
T PRK11248        122 EKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVL  201 (255)
T ss_pred             hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            35788999999999999999999999999999999999999999999888765    57999999999999999999999


Q ss_pred             Ee--CCeEeE
Q psy2684          78 LD--MKKLFY   85 (356)
Q Consensus        78 l~--~g~~~~   85 (356)
                      |+  +|+++.
T Consensus       202 l~~~~G~i~~  211 (255)
T PRK11248        202 LSPGPGRVVE  211 (255)
T ss_pred             EeCCCcEEEE
Confidence            98  488865

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.85  E-value=1.3e-21  Score=178.78  Aligned_cols=139  Identities=27%  Similarity=0.322  Sum_probs=97.6

Q ss_pred             ecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCcee-----------EeeeccccCcCCe
Q psy2684         183 HDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL-----------LEKVNFGLDMESR  251 (356)
Q Consensus       183 ~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~-----------~~g~~~~~~~~~~  251 (356)
                      .+++++|++...+++++|+ +.+|++++|+||||||||||+++|+|+++|++|+|.           ++|.++..     
T Consensus         4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~-----   77 (255)
T cd03236           4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQN-----   77 (255)
T ss_pred             cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhh-----
Confidence            4788999544468999995 999999999999999999999999999999999996           33322210     


Q ss_pred             eeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC--CCHHHHHHHHhhcCC
Q psy2684         252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN--LPYEKSRRQLGMFGL  329 (356)
Q Consensus       252 ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~--~~~~~~~~~L~~~~l  329 (356)
                                   .           .... ......++|++|+..  +++. ++.+.+.....  .....+.++++.+|+
T Consensus        78 -------------~-----------~~~~-~~~~~~i~~~~~~~~--~~~~-~~~~~i~~~l~~~~~~~~~~~~l~~~gl  129 (255)
T cd03236          78 -------------Y-----------FTKL-LEGDVKVIVKPQYVD--LIPK-AVKGKVGELLKKKDERGKLDELVDQLEL  129 (255)
T ss_pred             -------------h-----------hHHh-hhcccceeeecchhc--cCch-HHHHHHHHHhchhHHHHHHHHHHHHcCC
Confidence                         0           0000 001124788888753  3342 44444432211  123457789999999


Q ss_pred             CCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         330 PSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       330 ~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ...... ++.+||||||||++||++++
T Consensus       130 ~~~~~~-~~~~LS~G~~qrv~laral~  155 (255)
T cd03236         130 RHVLDR-NIDQLSGGELQRVAIAAALA  155 (255)
T ss_pred             chhhcC-ChhhCCHHHHHHHHHHHHHH
Confidence            876544 67999999999999999874

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.85  E-value=1.8e-21  Score=174.71  Aligned_cols=118  Identities=29%  Similarity=0.375  Sum_probs=90.9

Q ss_pred             eeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCccee
Q psy2684         201 FGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL  280 (356)
Q Consensus       201 l~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~  280 (356)
                      |+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.                                   
T Consensus         1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----------------------------------   45 (223)
T TIGR03771         1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----------------------------------   45 (223)
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----------------------------------
Confidence            578999999999999999999999999999999999999875421                                   


Q ss_pred             EeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-------C-C---CHHHHHHHHhhcCCCCccccCCCCCCChHHHHHH
Q psy2684         281 RKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-------N-L---PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARV  349 (356)
Q Consensus       281 ~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-------~-~---~~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRv  349 (356)
                        ..+.+++|++|++........|+.+++....       . .   ....+.++++.+++.+.... ++.+|||||||||
T Consensus        46 --~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv  122 (223)
T TIGR03771        46 --KGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADR-PVGELSGGQRQRV  122 (223)
T ss_pred             --HhhCcEEEecccccccCCCCccHHHHHHhccccccccccCCcHHHHHHHHHHHHHhCCchhhcC-ChhhCCHHHHHHH
Confidence              0124699999987422223468888764321       0 1   12346778999999866554 6799999999999


Q ss_pred             HHHHHcC
Q psy2684         350 ALAELTL  356 (356)
Q Consensus       350 alA~~~l  356 (356)
                      +||++++
T Consensus       123 ~laral~  129 (223)
T TIGR03771       123 LVARALA  129 (223)
T ss_pred             HHHHHHh
Confidence            9999974

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.85  E-value=5e-21  Score=175.16  Aligned_cols=91  Identities=24%  Similarity=0.423  Sum_probs=81.0

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++.+.+|||||+||++||++|+.+|++|||||||++||+.+++++.+++.+    .+.|||+||||.+++..+||++++
T Consensus       142 ~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~  221 (253)
T TIGR02323       142 IDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLV  221 (253)
T ss_pred             hhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE
Confidence            3578899999999999999999999999999999999999999998777764    368999999999999999999999


Q ss_pred             EeCCeEeEecCCHHHH
Q psy2684          78 LDMKKLFYYKGNFTLF   93 (356)
Q Consensus        78 l~~g~~~~~~g~~~~~   93 (356)
                      |++|+++.. |..+.+
T Consensus       222 l~~G~i~~~-~~~~~~  236 (253)
T TIGR02323       222 MQQGRVVES-GLTDQV  236 (253)
T ss_pred             EECCEEEEE-CCHHHH
Confidence            999999854 555443

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=4.3e-21  Score=178.19  Aligned_cols=91  Identities=32%  Similarity=0.357  Sum_probs=82.1

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++++.+|||||+||++||++|+.+|++|||||||++||+.+++++.++|+++   +.|||+||||++++..+||++++|
T Consensus       139 ~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l  218 (280)
T PRK13649        139 FEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVL  218 (280)
T ss_pred             hhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEE
Confidence            36788999999999999999999999999999999999999999998888765   579999999999999999999999


Q ss_pred             eCCeEeEecCCHHHH
Q psy2684          79 DMKKLFYYKGNFTLF   93 (356)
Q Consensus        79 ~~g~~~~~~g~~~~~   93 (356)
                      ++|+++.+ |..+++
T Consensus       219 ~~G~i~~~-g~~~~~  232 (280)
T PRK13649        219 EKGKLVLS-GKPKDI  232 (280)
T ss_pred             ECCEEEEe-CCHHHH
Confidence            99999864 555443

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=4.7e-21  Score=175.87  Aligned_cols=90  Identities=24%  Similarity=0.411  Sum_probs=81.5

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEe
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLD   79 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~   79 (356)
                      .++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++++++  +.|||+||||++++.++||+|++|+
T Consensus       148 ~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~  227 (258)
T PRK14268        148 LKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFL  227 (258)
T ss_pred             hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEE
Confidence            36788999999999999999999999999999999999999999998888765  4799999999999999999999999


Q ss_pred             CCeEeEecCCHHH
Q psy2684          80 MKKLFYYKGNFTL   92 (356)
Q Consensus        80 ~g~~~~~~g~~~~   92 (356)
                      +|++... |..++
T Consensus       228 ~G~i~~~-~~~~~  239 (258)
T PRK14268        228 MGELIEF-GQTRQ  239 (258)
T ss_pred             CCEEEEe-CCHHH
Confidence            9999754 55543

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.85  E-value=5.5e-21  Score=173.71  Aligned_cols=91  Identities=23%  Similarity=0.391  Sum_probs=82.8

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEe
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLD   79 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~   79 (356)
                      .++.+.+|||||+||++||++|+.+|++|||||||++||+.++.++.++++++  +.|||+||||.+++.++||+|++|+
T Consensus       137 ~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~  216 (242)
T TIGR03411       137 ADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLH  216 (242)
T ss_pred             hcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEE
Confidence            36788999999999999999999999999999999999999999999988875  4699999999999999999999999


Q ss_pred             CCeEeEecCCHHHH
Q psy2684          80 MKKLFYYKGNFTLF   93 (356)
Q Consensus        80 ~g~~~~~~g~~~~~   93 (356)
                      +|+++. .|+.+++
T Consensus       217 ~g~~~~-~~~~~~~  229 (242)
T TIGR03411       217 QGSVLA-EGSLDQV  229 (242)
T ss_pred             CCeEEe-eCCHHHH
Confidence            999985 4666554

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.85  E-value=5.1e-21  Score=172.64  Aligned_cols=91  Identities=29%  Similarity=0.438  Sum_probs=81.0

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||+||++||++|+.+|+||||||||++||+.++..+.++++++    +.|||+||||.+++..+||++++
T Consensus       119 ~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~  198 (230)
T TIGR02770       119 LKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAV  198 (230)
T ss_pred             HhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            36788999999999999999999999999999999999999998888777653    57999999999999999999999


Q ss_pred             EeCCeEeEecCCHHHH
Q psy2684          78 LDMKKLFYYKGNFTLF   93 (356)
Q Consensus        78 l~~g~~~~~~g~~~~~   93 (356)
                      |++|++... |..+++
T Consensus       199 l~~G~i~~~-~~~~~~  213 (230)
T TIGR02770       199 MDDGRIVER-GTVKEI  213 (230)
T ss_pred             EECCEEEEe-CCHHHH
Confidence            999999854 555443

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=5.2e-21  Score=175.25  Aligned_cols=91  Identities=22%  Similarity=0.379  Sum_probs=81.6

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||+||++||++|+.+|++|||||||++||+.++..+.++|.++    +.|||+||||.+++.++||++++
T Consensus       147 ~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~  226 (255)
T PRK11300        147 ANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYV  226 (255)
T ss_pred             hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            46789999999999999999999999999999999999999999988888653    67999999999999999999999


Q ss_pred             EeCCeEeEecCCHHHH
Q psy2684          78 LDMKKLFYYKGNFTLF   93 (356)
Q Consensus        78 l~~g~~~~~~g~~~~~   93 (356)
                      |++|+++. .|+.+.+
T Consensus       227 l~~g~i~~-~~~~~~~  241 (255)
T PRK11300        227 VNQGTPLA-NGTPEEI  241 (255)
T ss_pred             EECCeEEe-cCCHHHH
Confidence            99999985 4555443

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.85  E-value=5.2e-21  Score=176.38  Aligned_cols=91  Identities=20%  Similarity=0.316  Sum_probs=81.9

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      ++.+.+|||||+||++||++|+.+|+||||||||++||+.++.++.+.|.++    +.|||+||||++++..+||++++|
T Consensus       144 ~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l  223 (267)
T PRK15112        144 SYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVM  223 (267)
T ss_pred             hcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEE
Confidence            5678999999999999999999999999999999999999999988888764    679999999999999999999999


Q ss_pred             eCCeEeEecCCHHHHH
Q psy2684          79 DMKKLFYYKGNFTLFK   94 (356)
Q Consensus        79 ~~g~~~~~~g~~~~~~   94 (356)
                      ++|++.. .|+++.+.
T Consensus       224 ~~G~i~~-~~~~~~~~  238 (267)
T PRK15112        224 HQGEVVE-RGSTADVL  238 (267)
T ss_pred             ECCEEEe-cCCHHHHh
Confidence            9999974 56665543

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.85  E-value=3.1e-21  Score=171.89  Aligned_cols=82  Identities=30%  Similarity=0.529  Sum_probs=76.3

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++++.+|||||+||++||++|+.+|++|||||||++||+.+++++.++++++   +.|||++|||.+++.++||++++|
T Consensus       129 ~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l  208 (213)
T cd03262         129 ADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFM  208 (213)
T ss_pred             hhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            36788999999999999999999999999999999999999999998888765   579999999999999999999999


Q ss_pred             eCCeE
Q psy2684          79 DMKKL   83 (356)
Q Consensus        79 ~~g~~   83 (356)
                      ++|++
T Consensus       209 ~~g~i  213 (213)
T cd03262         209 DDGRI  213 (213)
T ss_pred             eCCcC
Confidence            98864

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.85  E-value=6.1e-21  Score=173.98  Aligned_cols=90  Identities=33%  Similarity=0.447  Sum_probs=81.5

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcC--cEEEEEecChhHHhhhcCEEEEEeC
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK--KTLLVVSHDQSFLNNICTDIIHLDM   80 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~l~~~~~~i~~l~~   80 (356)
                      ++++.+|||||+||++||++|+.+|++|||||||++||+.++..+.++++++.  .|||+||||.+++..+||++++|++
T Consensus       139 ~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~  218 (247)
T TIGR00972       139 HDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYD  218 (247)
T ss_pred             hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEEC
Confidence            57889999999999999999999999999999999999999999988887653  7999999999999999999999999


Q ss_pred             CeEeEecCCHHHH
Q psy2684          81 KKLFYYKGNFTLF   93 (356)
Q Consensus        81 g~~~~~~g~~~~~   93 (356)
                      |++... |+.+++
T Consensus       219 G~i~~~-~~~~~~  230 (247)
T TIGR00972       219 GELVEY-GPTEQI  230 (247)
T ss_pred             CEEEEe-CCHHHH
Confidence            999754 555443

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.85  E-value=4.4e-21  Score=183.36  Aligned_cols=88  Identities=32%  Similarity=0.478  Sum_probs=79.9

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++.+.+||||||||++||++|+.+|++|||||||++||+.++..+.+.|+++    +.|||+||||++++..+||++++
T Consensus       122 ~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~  201 (352)
T PRK11144        122 LDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVV  201 (352)
T ss_pred             hhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEE
Confidence            46889999999999999999999999999999999999999998887777653    67999999999999999999999


Q ss_pred             EeCCeEeEecCCH
Q psy2684          78 LDMKKLFYYKGNF   90 (356)
Q Consensus        78 l~~g~~~~~~g~~   90 (356)
                      |++|++..+ |+.
T Consensus       202 l~~G~i~~~-g~~  213 (352)
T PRK11144        202 LEQGKVKAF-GPL  213 (352)
T ss_pred             EeCCEEEEe-cCH
Confidence            999999865 443

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.85  E-value=4.6e-21  Score=171.90  Aligned_cols=89  Identities=27%  Similarity=0.394  Sum_probs=80.5

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++++.+|||||+||++||++|+.+|++|||||||++||+.++..+.++|+++   +.|||++|||.+++.++||++++|
T Consensus       126 ~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l  205 (222)
T cd03224         126 RKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVL  205 (222)
T ss_pred             hhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEe
Confidence            36778999999999999999999999999999999999999999988888764   579999999999999999999999


Q ss_pred             eCCeEeEecCCHH
Q psy2684          79 DMKKLFYYKGNFT   91 (356)
Q Consensus        79 ~~g~~~~~~g~~~   91 (356)
                      ++|++.. .|+.+
T Consensus       206 ~~G~i~~-~~~~~  217 (222)
T cd03224         206 ERGRVVL-EGTAA  217 (222)
T ss_pred             eCCeEEE-eCCHH
Confidence            9999975 35543

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.85  E-value=5.7e-21  Score=175.29  Aligned_cols=89  Identities=25%  Similarity=0.433  Sum_probs=80.5

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEEE
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      ++.+.+|||||+||++||++|+.+|+||||||||++||+.++.++.+.+++    ++.|||+||||++++..+||+|++|
T Consensus       146 ~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l  225 (258)
T PRK11701        146 DDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVM  225 (258)
T ss_pred             hCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEE
Confidence            578899999999999999999999999999999999999999998887764    3679999999999999999999999


Q ss_pred             eCCeEeEecCCHHH
Q psy2684          79 DMKKLFYYKGNFTL   92 (356)
Q Consensus        79 ~~g~~~~~~g~~~~   92 (356)
                      ++|+++. .|..++
T Consensus       226 ~~g~i~~-~~~~~~  238 (258)
T PRK11701        226 KQGRVVE-SGLTDQ  238 (258)
T ss_pred             ECCEEEE-eCCHHH
Confidence            9999985 455544

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.85  E-value=4.5e-21  Score=173.67  Aligned_cols=84  Identities=32%  Similarity=0.539  Sum_probs=78.6

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||+||++||++|+.+|++|||||||++||+.+++++.++|+++    +.|||+||||++++..+||++++
T Consensus       147 ~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~  226 (236)
T cd03267         147 LDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLV  226 (236)
T ss_pred             hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEE
Confidence            36778999999999999999999999999999999999999999999988876    57999999999999999999999


Q ss_pred             EeCCeEeE
Q psy2684          78 LDMKKLFY   85 (356)
Q Consensus        78 l~~g~~~~   85 (356)
                      |++|++..
T Consensus       227 l~~G~i~~  234 (236)
T cd03267         227 IDKGRLLY  234 (236)
T ss_pred             EeCCEEEe
Confidence            99999864

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=5.8e-21  Score=174.04  Aligned_cols=89  Identities=27%  Similarity=0.450  Sum_probs=81.0

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEe
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLD   79 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~   79 (356)
                      .++.+.+|||||+||++||++|+.+|++|||||||++||+.++.++.+.+.++  +.|||+||||++++..+||++++|+
T Consensus       136 ~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~  215 (246)
T PRK14269        136 LKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFH  215 (246)
T ss_pred             hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEE
Confidence            35678999999999999999999999999999999999999999998888764  6799999999999999999999999


Q ss_pred             CCeEeEecCCHH
Q psy2684          80 MKKLFYYKGNFT   91 (356)
Q Consensus        80 ~g~~~~~~g~~~   91 (356)
                      +|+++.. |..+
T Consensus       216 ~G~i~~~-g~~~  226 (246)
T PRK14269        216 LGELIEF-GESK  226 (246)
T ss_pred             CCEEEEE-CCHH
Confidence            9999865 4443

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=7e-21  Score=174.32  Aligned_cols=91  Identities=22%  Similarity=0.312  Sum_probs=81.9

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEe
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLD   79 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~   79 (356)
                      .++.+.+|||||+||++||++|+.+|++|||||||++||+.++.++.+.|+++  +.|||+||||.+++..+||++++|+
T Consensus       144 ~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~  223 (254)
T PRK14273        144 LNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFL  223 (254)
T ss_pred             HhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            36778999999999999999999999999999999999999999998888776  4799999999999999999999999


Q ss_pred             CCeEeEecCCHHHH
Q psy2684          80 MKKLFYYKGNFTLF   93 (356)
Q Consensus        80 ~g~~~~~~g~~~~~   93 (356)
                      +|+++.. |..+++
T Consensus       224 ~G~i~~~-g~~~~~  236 (254)
T PRK14273        224 NGCIEEE-SSTDEL  236 (254)
T ss_pred             CCEEEEe-CCHHHH
Confidence            9999864 555443

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=5.5e-21  Score=175.12  Aligned_cols=91  Identities=29%  Similarity=0.422  Sum_probs=82.1

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++++.+|||||+||++||++|+.+|++|||||||++||+.+++++.++|+++   +.|||++|||++++.++||++++|
T Consensus       132 ~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l  211 (255)
T PRK11231        132 ADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVL  211 (255)
T ss_pred             HcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEE
Confidence            36788999999999999999999999999999999999999999998888754   579999999999999999999999


Q ss_pred             eCCeEeEecCCHHHH
Q psy2684          79 DMKKLFYYKGNFTLF   93 (356)
Q Consensus        79 ~~g~~~~~~g~~~~~   93 (356)
                      ++|++.. .|+++.+
T Consensus       212 ~~G~i~~-~~~~~~~  225 (255)
T PRK11231        212 ANGHVMA-QGTPEEV  225 (255)
T ss_pred             ECCeEEE-EcCHHHh
Confidence            9999974 4665544

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.85  E-value=6.9e-21  Score=162.65  Aligned_cols=78  Identities=28%  Similarity=0.303  Sum_probs=73.1

Q ss_pred             cCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEEeCCeEe
Q psy2684           8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHLDMKKLF   84 (356)
Q Consensus         8 ~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l~~g~~~   84 (356)
                      +|||||+||++||++|+.+|++|||||||++||+.+++++.++++++   +.|||++|||.+++.++||++++|++|++.
T Consensus        82 qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~  161 (163)
T cd03216          82 QLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV  161 (163)
T ss_pred             ecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence            39999999999999999999999999999999999999998888765   579999999999999999999999999986


Q ss_pred             E
Q psy2684          85 Y   85 (356)
Q Consensus        85 ~   85 (356)
                      .
T Consensus       162 ~  162 (163)
T cd03216         162 G  162 (163)
T ss_pred             e
Confidence            3

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=7.1e-21  Score=174.05  Aligned_cols=90  Identities=27%  Similarity=0.461  Sum_probs=82.0

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcC--cEEEEEecChhHHhhhcCEEEEEeC
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK--KTLLVVSHDQSFLNNICTDIIHLDM   80 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~l~~~~~~i~~l~~   80 (356)
                      ++++.+|||||+||++||++|+.+|+||||||||++||+.++.++.++|+++.  .|||++|||.+++..+||++++|++
T Consensus       143 ~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~  222 (252)
T PRK14272        143 KTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLV  222 (252)
T ss_pred             cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEEC
Confidence            67889999999999999999999999999999999999999999999888764  8999999999999999999999999


Q ss_pred             CeEeEecCCHHHH
Q psy2684          81 KKLFYYKGNFTLF   93 (356)
Q Consensus        81 g~~~~~~g~~~~~   93 (356)
                      |+++. .|..+++
T Consensus       223 G~i~~-~~~~~~~  234 (252)
T PRK14272        223 GDLVE-HGPTDQL  234 (252)
T ss_pred             CEEEE-eCCHHHH
Confidence            99985 4555443

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.85  E-value=5.5e-21  Score=171.73  Aligned_cols=84  Identities=30%  Similarity=0.419  Sum_probs=77.3

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++++.+|||||+||++||++|+.+|++|||||||++||+.++..+.++++++   +.|||+||||.+++..+||++++|
T Consensus       136 ~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l  215 (224)
T cd03220         136 IDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVL  215 (224)
T ss_pred             hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            36788999999999999999999999999999999999999988887777654   579999999999999999999999


Q ss_pred             eCCeEeE
Q psy2684          79 DMKKLFY   85 (356)
Q Consensus        79 ~~g~~~~   85 (356)
                      ++|++..
T Consensus       216 ~~G~i~~  222 (224)
T cd03220         216 EKGKIRF  222 (224)
T ss_pred             ECCEEEe
Confidence            9999864

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.85  E-value=1.8e-20  Score=172.29  Aligned_cols=93  Identities=23%  Similarity=0.354  Sum_probs=83.1

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++++.+|||||+||++||++|+.+|++|||||||++||+.++..+.+++.++   +.|||+||||++++..+||+|++|
T Consensus       137 ~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l  216 (264)
T PRK13546        137 IYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWI  216 (264)
T ss_pred             hcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEE
Confidence            35688999999999999999999999999999999999999988888877654   689999999999999999999999


Q ss_pred             eCCeEeEecCCHHHHHH
Q psy2684          79 DMKKLFYYKGNFTLFKK   95 (356)
Q Consensus        79 ~~g~~~~~~g~~~~~~~   95 (356)
                      ++|++..+ |+.+.+..
T Consensus       217 ~~G~i~~~-g~~~~~~~  232 (264)
T PRK13546        217 EGGKLKDY-GELDDVLP  232 (264)
T ss_pred             ECCEEEEe-CCHHHHHH
Confidence            99999864 66665543

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.85  E-value=8.6e-21  Score=176.34  Aligned_cols=92  Identities=28%  Similarity=0.422  Sum_probs=82.6

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||+||++||++|+.+|++|||||||++||+.++..+.++++++    +.|||+||||++++..+|||+++
T Consensus       135 ~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~  214 (283)
T PRK13636        135 KDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFV  214 (283)
T ss_pred             hhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEE
Confidence            46889999999999999999999999999999999999999998877777653    67999999999999999999999


Q ss_pred             EeCCeEeEecCCHHHHH
Q psy2684          78 LDMKKLFYYKGNFTLFK   94 (356)
Q Consensus        78 l~~g~~~~~~g~~~~~~   94 (356)
                      |++|+++. .|+++.+.
T Consensus       215 l~~G~i~~-~g~~~~~~  230 (283)
T PRK13636        215 MKEGRVIL-QGNPKEVF  230 (283)
T ss_pred             EECCEEEE-eCCHHHHh
Confidence            99999975 57776553

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.85  E-value=6e-21  Score=171.79  Aligned_cols=81  Identities=32%  Similarity=0.455  Sum_probs=76.3

Q ss_pred             CCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcC--cEEEEEecChhHHhhhcCEEEEEeCCeE
Q psy2684           6 TKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK--KTLLVVSHDQSFLNNICTDIIHLDMKKL   83 (356)
Q Consensus         6 ~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~l~~~~~~i~~l~~g~~   83 (356)
                      +.+|||||+||++||++|+.+|++|||||||++||+.++.++.++|+++.  .|||+||||++++.++||++++|++|++
T Consensus       139 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i  218 (227)
T cd03260         139 ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRL  218 (227)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEE
Confidence            59999999999999999999999999999999999999999999888763  6999999999999999999999999999


Q ss_pred             eEe
Q psy2684          84 FYY   86 (356)
Q Consensus        84 ~~~   86 (356)
                      +.+
T Consensus       219 ~~~  221 (227)
T cd03260         219 VEF  221 (227)
T ss_pred             EEe
Confidence            864

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=7e-21  Score=173.88  Aligned_cols=91  Identities=25%  Similarity=0.353  Sum_probs=82.4

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEe
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLD   79 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~   79 (356)
                      .++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++|+++  +.|||+||||++++.++||++++|+
T Consensus       140 ~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~  219 (250)
T PRK14247        140 LDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLY  219 (250)
T ss_pred             hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEE
Confidence            36788999999999999999999999999999999999999999999888765  4799999999999999999999999


Q ss_pred             CCeEeEecCCHHHH
Q psy2684          80 MKKLFYYKGNFTLF   93 (356)
Q Consensus        80 ~g~~~~~~g~~~~~   93 (356)
                      +|++.. .|+.+++
T Consensus       220 ~G~i~~-~g~~~~~  232 (250)
T PRK14247        220 KGQIVE-WGPTREV  232 (250)
T ss_pred             CCeEEE-ECCHHHH
Confidence            999975 4665544

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.85  E-value=6.6e-21  Score=174.18  Aligned_cols=88  Identities=30%  Similarity=0.440  Sum_probs=81.0

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEeC
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLDM   80 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~   80 (356)
                      ++++.+|||||+||++||++|+.+|++|||||||++||+.+++++.++++++  +.|||+||||.+++..+||+|++|++
T Consensus       142 ~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~  221 (251)
T PRK14251        142 DRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMN  221 (251)
T ss_pred             ccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEEC
Confidence            5788999999999999999999999999999999999999999999888876  57999999999999999999999999


Q ss_pred             CeEeEecCCHH
Q psy2684          81 KKLFYYKGNFT   91 (356)
Q Consensus        81 g~~~~~~g~~~   91 (356)
                      |++... |..+
T Consensus       222 G~i~~~-~~~~  231 (251)
T PRK14251        222 GDLIEA-GPTE  231 (251)
T ss_pred             CEEEEe-CCHH
Confidence            999865 4443

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.85  E-value=3.6e-21  Score=160.89  Aligned_cols=94  Identities=31%  Similarity=0.446  Sum_probs=80.1

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH---hcCcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQ---TWKKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~---~~~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .+.++..|||||+||++|||||+++|+++|+||||+.|||+-.-.+...++   +-+.|+++|||.+.|..+++++|+.|
T Consensus       146 ~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fL  225 (256)
T COG4598         146 ADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFL  225 (256)
T ss_pred             hhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEe
Confidence            467899999999999999999999999999999999999998766555544   45789999999999999999999999


Q ss_pred             eCCeEeEecCCHHHHHH
Q psy2684          79 DMKKLFYYKGNFTLFKK   95 (356)
Q Consensus        79 ~~g~~~~~~g~~~~~~~   95 (356)
                      ++|.+.+.+.+-..|..
T Consensus       226 h~G~iEE~G~P~qvf~n  242 (256)
T COG4598         226 HQGKIEEEGPPEQVFGN  242 (256)
T ss_pred             ecceecccCChHHHhcC
Confidence            99999874333344433

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.85  E-value=5.9e-21  Score=172.58  Aligned_cols=89  Identities=31%  Similarity=0.339  Sum_probs=79.6

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH----HHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEE
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAV----IWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~----~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      ++++++||||+||||-|||||+.+|+|||+|||++.|||--+    +.|.++-+++++|||+||||+++..++.|||..|
T Consensus       159 ~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaim  238 (386)
T COG4175         159 DKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIM  238 (386)
T ss_pred             hcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEe
Confidence            678999999999999999999999999999999999999654    5566666778899999999999999999999999


Q ss_pred             eCCeEeEecCCHHH
Q psy2684          79 DMKKLFYYKGNFTL   92 (356)
Q Consensus        79 ~~g~~~~~~g~~~~   92 (356)
                      .+|+++.. |..++
T Consensus       239 kdG~ivQ~-Gtp~e  251 (386)
T COG4175         239 KDGEIVQV-GTPEE  251 (386)
T ss_pred             cCCeEEEe-CCHHH
Confidence            99999975 54443

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.85  E-value=5e-21  Score=162.89  Aligned_cols=91  Identities=26%  Similarity=0.531  Sum_probs=82.7

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .||.+..+|-|+||||+||+||+++|++||||||||+||..+...+.++++.+   +.+||+.||+++++.++||+|++|
T Consensus       127 ~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivl  206 (245)
T COG4555         127 LDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVL  206 (245)
T ss_pred             HHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEE
Confidence            36778899999999999999999999999999999999999999988888765   579999999999999999999999


Q ss_pred             eCCeEeEecCCHHHH
Q psy2684          79 DMKKLFYYKGNFTLF   93 (356)
Q Consensus        79 ~~g~~~~~~g~~~~~   93 (356)
                      +.|+++. .|+.+..
T Consensus       207 h~Gevv~-~gs~~~l  220 (245)
T COG4555         207 HKGEVVL-EGSIEAL  220 (245)
T ss_pred             ecCcEEE-cCCHHHH
Confidence            9999984 6776543

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.85  E-value=6.5e-21  Score=171.91  Aligned_cols=90  Identities=22%  Similarity=0.360  Sum_probs=81.5

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++|.++    +.|||+||||.+++..+||++++
T Consensus       125 ~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~  204 (230)
T TIGR03410       125 LGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYV  204 (230)
T ss_pred             hhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEE
Confidence            36788999999999999999999999999999999999999999998888764    57999999999999999999999


Q ss_pred             EeCCeEeEecCCHHH
Q psy2684          78 LDMKKLFYYKGNFTL   92 (356)
Q Consensus        78 l~~g~~~~~~g~~~~   92 (356)
                      |++|+++. .|+.+.
T Consensus       205 l~~g~i~~-~~~~~~  218 (230)
T TIGR03410       205 MERGRVVA-SGAGDE  218 (230)
T ss_pred             EECCEEEE-ECCHHH
Confidence            99999975 455543

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.84  E-value=3e-21  Score=180.05  Aligned_cols=96  Identities=27%  Similarity=0.424  Sum_probs=85.3

Q ss_pred             CCCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH----HHHHHHHhcCcEEEEEecChhHHhhhcCEEE
Q psy2684           1 MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVI----WLDNYLQTWKKTLLVVSHDQSFLNNICTDII   76 (356)
Q Consensus         1 ~~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~----~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~   76 (356)
                      +.+|.+.+|||||||||+|||||+.+|+++|||||+++||+.-+.    ++.++.++++.|+|.||||..++...+|||+
T Consensus       126 lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~  205 (338)
T COG3839         126 LLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIV  205 (338)
T ss_pred             HHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEE
Confidence            368999999999999999999999999999999999999998754    4555556678999999999999999999999


Q ss_pred             EEeCCeEeEecCCHHHHHHH
Q psy2684          77 HLDMKKLFYYKGNFTLFKKM   96 (356)
Q Consensus        77 ~l~~g~~~~~~g~~~~~~~~   96 (356)
                      +|++|++..++.+.+.|.+.
T Consensus       206 Vm~~G~i~Q~g~p~ely~~P  225 (338)
T COG3839         206 VMNDGRIQQVGTPLELYERP  225 (338)
T ss_pred             EEeCCeeeecCChHHHhhCc
Confidence            99999999987777777553

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.84  E-value=8.4e-21  Score=174.86  Aligned_cols=90  Identities=24%  Similarity=0.336  Sum_probs=80.3

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||+||++||++|+.+|+||||||||++||+.++..+.++|.++    +.|||+||||++++.++||+|++
T Consensus       141 ~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~  220 (265)
T PRK10575        141 AHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVA  220 (265)
T ss_pred             hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            36788999999999999999999999999999999999999998877777653    67999999999999999999999


Q ss_pred             EeCCeEeEecCCHHH
Q psy2684          78 LDMKKLFYYKGNFTL   92 (356)
Q Consensus        78 l~~g~~~~~~g~~~~   92 (356)
                      |++|+++. .|..++
T Consensus       221 l~~G~i~~-~~~~~~  234 (265)
T PRK10575        221 LRGGEMIA-QGTPAE  234 (265)
T ss_pred             EECCeEEE-ecCHHH
Confidence            99999974 455443

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.84  E-value=7.4e-21  Score=175.23  Aligned_cols=91  Identities=24%  Similarity=0.468  Sum_probs=81.0

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||+||++||++|+.+|++|||||||++||+.++..+.++|+++    +.|||+||||++++..+||++++
T Consensus       144 ~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~  223 (265)
T TIGR02769       144 ADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAV  223 (265)
T ss_pred             hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEE
Confidence            36788999999999999999999999999999999999999988877777653    67999999999999999999999


Q ss_pred             EeCCeEeEecCCHHHH
Q psy2684          78 LDMKKLFYYKGNFTLF   93 (356)
Q Consensus        78 l~~g~~~~~~g~~~~~   93 (356)
                      |++|+++. .|+.+++
T Consensus       224 l~~G~i~~-~g~~~~~  238 (265)
T TIGR02769       224 MDKGQIVE-ECDVAQL  238 (265)
T ss_pred             EeCCEEEE-ECCHHHH
Confidence            99999975 4665443

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.84  E-value=7.4e-21  Score=173.71  Aligned_cols=89  Identities=29%  Similarity=0.464  Sum_probs=81.3

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEeC
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLDM   80 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~   80 (356)
                      ++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++|+++  +.|||+||||++++..+||++++|++
T Consensus       141 ~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~  220 (250)
T PRK14240        141 KKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLN  220 (250)
T ss_pred             hcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEEC
Confidence            6788999999999999999999999999999999999999999999888765  47999999999999999999999999


Q ss_pred             CeEeEecCCHHH
Q psy2684          81 KKLFYYKGNFTL   92 (356)
Q Consensus        81 g~~~~~~g~~~~   92 (356)
                      |+++.+ |+.++
T Consensus       221 G~i~~~-~~~~~  231 (250)
T PRK14240        221 GEIVEF-GDTVD  231 (250)
T ss_pred             CEEEEe-CCHHH
Confidence            999865 44443

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.84  E-value=9.8e-21  Score=174.41  Aligned_cols=90  Identities=32%  Similarity=0.372  Sum_probs=81.3

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||+||++||++|+.+|++|||||||++||+.+++++.++|.++    +.|||+||||++++.++||++++
T Consensus       137 ~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~  216 (265)
T PRK10253        137 ADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIA  216 (265)
T ss_pred             hcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            46889999999999999999999999999999999999999999988887654    57999999999999999999999


Q ss_pred             EeCCeEeEecCCHHH
Q psy2684          78 LDMKKLFYYKGNFTL   92 (356)
Q Consensus        78 l~~g~~~~~~g~~~~   92 (356)
                      |++|+++. .|..++
T Consensus       217 l~~G~i~~-~g~~~~  230 (265)
T PRK10253        217 LREGKIVA-QGAPKE  230 (265)
T ss_pred             EECCEEEE-eCCHHH
Confidence            99999975 455443

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.84  E-value=2e-21  Score=182.15  Aligned_cols=95  Identities=28%  Similarity=0.381  Sum_probs=84.3

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH----HHHHHHhcCcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIW----LDNYLQTWKKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~----l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .+|.+++|||||+|||+|||||+.+|+|||||||.++||..-+..    |.++.++.+.|.|+||||.++...++|||++
T Consensus       130 ~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~V  209 (352)
T COG3842         130 ADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAV  209 (352)
T ss_pred             hhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEE
Confidence            468999999999999999999999999999999999999977654    5566667789999999999999999999999


Q ss_pred             EeCCeEeEecCCHHHHHHH
Q psy2684          78 LDMKKLFYYKGNFTLFKKM   96 (356)
Q Consensus        78 l~~g~~~~~~g~~~~~~~~   96 (356)
                      |++|+|...+.+.+-|..+
T Consensus       210 m~~G~I~Q~gtP~eiY~~P  228 (352)
T COG3842         210 MNDGRIEQVGTPEEIYERP  228 (352)
T ss_pred             ccCCceeecCCHHHHhhCc
Confidence            9999999876666666553

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.84  E-value=8.9e-21  Score=169.07  Aligned_cols=85  Identities=32%  Similarity=0.385  Sum_probs=78.0

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++.+.+|||||+||++||++|+.+|++|||||||++||+.++..+.++++++    +.|||+||||.+++.++||++++
T Consensus       122 ~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~  201 (213)
T TIGR01277       122 LDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAV  201 (213)
T ss_pred             hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEE
Confidence            36788999999999999999999999999999999999999998887777653    57999999999999999999999


Q ss_pred             EeCCeEeEe
Q psy2684          78 LDMKKLFYY   86 (356)
Q Consensus        78 l~~g~~~~~   86 (356)
                      |++|++...
T Consensus       202 l~~g~i~~~  210 (213)
T TIGR01277       202 VSQGKIKVV  210 (213)
T ss_pred             EECCeEEEe
Confidence            999999754

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.84  E-value=9.7e-21  Score=176.33  Aligned_cols=89  Identities=30%  Similarity=0.414  Sum_probs=81.2

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---C-cEEEEEecChhHHhhhcCEEEEE
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---K-KTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~-~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      ++++.+||+|||||+.||.||+.+|++|||||||++|||.++..+.++|+++   + .|||++||.++++..+||+|++|
T Consensus       131 ~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il  210 (293)
T COG1131         131 NKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIIL  210 (293)
T ss_pred             CcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEE
Confidence            5779999999999999999999999999999999999999999988888765   3 59999999999999999999999


Q ss_pred             eCCeEeEecCCHHH
Q psy2684          79 DMKKLFYYKGNFTL   92 (356)
Q Consensus        79 ~~g~~~~~~g~~~~   92 (356)
                      ++|+++.++ ..+.
T Consensus       211 ~~G~~~~~g-~~~~  223 (293)
T COG1131         211 NDGKIIAEG-TPEE  223 (293)
T ss_pred             eCCEEEEeC-CHHH
Confidence            999999764 5544

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.84  E-value=9.4e-21  Score=173.65  Aligned_cols=91  Identities=35%  Similarity=0.500  Sum_probs=82.4

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++|+++   +.|||+||||++++.++||+|++|
T Consensus       131 ~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l  210 (256)
T TIGR03873       131 ADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVL  210 (256)
T ss_pred             hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            46789999999999999999999999999999999999999999988888765   579999999999999999999999


Q ss_pred             eCCeEeEecCCHHHH
Q psy2684          79 DMKKLFYYKGNFTLF   93 (356)
Q Consensus        79 ~~g~~~~~~g~~~~~   93 (356)
                      ++|+++. .|..+++
T Consensus       211 ~~G~i~~-~g~~~~~  224 (256)
T TIGR03873       211 DGGRVVA-AGPPREV  224 (256)
T ss_pred             eCCCEEE-ecCHHHh
Confidence            9999985 4655443

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=9.8e-21  Score=173.04  Aligned_cols=88  Identities=24%  Similarity=0.443  Sum_probs=80.8

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEeC
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLDM   80 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~   80 (356)
                      ++++.+|||||+||++||++|+.+|+||||||||++||+.++.++.++|+++  +.|||+||||++++..+||++++|++
T Consensus       142 ~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~  221 (251)
T PRK14270        142 KKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLM  221 (251)
T ss_pred             hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEEC
Confidence            5778999999999999999999999999999999999999999998888876  47999999999999999999999999


Q ss_pred             CeEeEecCCHH
Q psy2684          81 KKLFYYKGNFT   91 (356)
Q Consensus        81 g~~~~~~g~~~   91 (356)
                      |+++.+ |+.+
T Consensus       222 G~i~~~-~~~~  231 (251)
T PRK14270        222 GDLIEF-NKTE  231 (251)
T ss_pred             CeEEEe-CCHH
Confidence            999875 4443

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=1.1e-20  Score=172.98  Aligned_cols=90  Identities=28%  Similarity=0.425  Sum_probs=81.5

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEe
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLD   79 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~   79 (356)
                      .++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++|+++  +.|||+||||++++..+||+|++|+
T Consensus       143 ~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~  222 (253)
T PRK14267        143 LNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLY  222 (253)
T ss_pred             hccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEE
Confidence            35788999999999999999999999999999999999999999998888765  3799999999999999999999999


Q ss_pred             CCeEeEecCCHHH
Q psy2684          80 MKKLFYYKGNFTL   92 (356)
Q Consensus        80 ~g~~~~~~g~~~~   92 (356)
                      +|++... |+.++
T Consensus       223 ~G~i~~~-~~~~~  234 (253)
T PRK14267        223 LGKLIEV-GPTRK  234 (253)
T ss_pred             CCEEEEe-CCHHH
Confidence            9999864 55543

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.84  E-value=9.6e-21  Score=173.19  Aligned_cols=90  Identities=28%  Similarity=0.442  Sum_probs=81.4

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      ++.+.+|||||+||++||++|+.+|++|||||||++||+.++.++.++|+++    +.|||+||||++++..+||++++|
T Consensus       141 ~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l  220 (252)
T TIGR03005       141 DHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFF  220 (252)
T ss_pred             hcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEE
Confidence            5778999999999999999999999999999999999999999888877653    679999999999999999999999


Q ss_pred             eCCeEeEecCCHHHH
Q psy2684          79 DMKKLFYYKGNFTLF   93 (356)
Q Consensus        79 ~~g~~~~~~g~~~~~   93 (356)
                      ++|+++. .|+++.+
T Consensus       221 ~~G~i~~-~g~~~~~  234 (252)
T TIGR03005       221 DKGRIVE-QGKPDEI  234 (252)
T ss_pred             ECCEEEE-eCCHHHH
Confidence            9999975 4666554

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.84  E-value=9e-21  Score=169.81  Aligned_cols=80  Identities=39%  Similarity=0.627  Sum_probs=74.5

Q ss_pred             CCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcC--cEEEEEecChhHHhhhcCEEEEEeCCe
Q psy2684           5 STKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK--KTLLVVSHDQSFLNNICTDIIHLDMKK   82 (356)
Q Consensus         5 ~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~l~~~~~~i~~l~~g~   82 (356)
                      .+.+|||||+||++||++|+.+|++|||||||++||+.++.++.+.|+++.  .|||+||||.+++ ++||++++|++|+
T Consensus       137 ~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~-~~~d~v~~l~~g~  215 (220)
T cd03245         137 RGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL-DLVDRIIVMDSGR  215 (220)
T ss_pred             CCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HhCCEEEEEeCCe
Confidence            457999999999999999999999999999999999999999999998764  6999999999987 6999999999999


Q ss_pred             EeE
Q psy2684          83 LFY   85 (356)
Q Consensus        83 ~~~   85 (356)
                      +..
T Consensus       216 i~~  218 (220)
T cd03245         216 IVA  218 (220)
T ss_pred             Eee
Confidence            864

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.84  E-value=1.4e-20  Score=184.47  Aligned_cols=90  Identities=22%  Similarity=0.382  Sum_probs=81.3

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++++.+||||||||++||++|+.+|++|||||||++||+.++..+.+.|+++   +.|||+||||++++..+||++++|
T Consensus       137 ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL  216 (549)
T PRK13545        137 IYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWL  216 (549)
T ss_pred             hhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEE
Confidence            36789999999999999999999999999999999999999999888888665   679999999999999999999999


Q ss_pred             eCCeEeEecCCHHH
Q psy2684          79 DMKKLFYYKGNFTL   92 (356)
Q Consensus        79 ~~g~~~~~~g~~~~   92 (356)
                      ++|++..+ |..++
T Consensus       217 ~~GkIv~~-G~~~e  229 (549)
T PRK13545        217 HYGQVKEY-GDIKE  229 (549)
T ss_pred             ECCEEEEE-CCHHH
Confidence            99999865 44433

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.84  E-value=7.2e-21  Score=172.45  Aligned_cols=90  Identities=20%  Similarity=0.259  Sum_probs=80.9

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEEe
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHLD   79 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l~   79 (356)
                      ++++.+|||||+||++||++|+.+|++|||||||++||+.++..+.+.++++   +.|||++|||.+++.++||++++|+
T Consensus       132 ~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~  211 (237)
T PRK11614        132 IQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLE  211 (237)
T ss_pred             hCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEe
Confidence            5678999999999999999999999999999999999999999888877653   6799999999999999999999999


Q ss_pred             CCeEeEecCCHHHH
Q psy2684          80 MKKLFYYKGNFTLF   93 (356)
Q Consensus        80 ~g~~~~~~g~~~~~   93 (356)
                      +|+++. .|+.++.
T Consensus       212 ~G~i~~-~~~~~~~  224 (237)
T PRK11614        212 NGHVVL-EDTGDAL  224 (237)
T ss_pred             CCEEEe-eCCHHHH
Confidence            999975 4665443

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.84  E-value=1.3e-20  Score=172.61  Aligned_cols=90  Identities=26%  Similarity=0.417  Sum_probs=80.7

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      ++++.+|||||+||++||++|+.+|++|||||||++||+.+++.+.++|+++    +.|||+||||.+++.++||++++|
T Consensus       135 ~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l  214 (254)
T PRK10418        135 KLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVM  214 (254)
T ss_pred             hcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEE
Confidence            6788999999999999999999999999999999999999998887777653    679999999999999999999999


Q ss_pred             eCCeEeEecCCHHHH
Q psy2684          79 DMKKLFYYKGNFTLF   93 (356)
Q Consensus        79 ~~g~~~~~~g~~~~~   93 (356)
                      ++|++.. .|+.+.+
T Consensus       215 ~~G~i~~-~~~~~~~  228 (254)
T PRK10418        215 SHGRIVE-QGDVETL  228 (254)
T ss_pred             ECCEEEE-ecCHHHH
Confidence            9999975 4655544

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.84  E-value=1.2e-20  Score=174.82  Aligned_cols=92  Identities=26%  Similarity=0.428  Sum_probs=82.8

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++.+.+|||||+||++||++|+.+|++|||||||++||+.+++.+.++++++    +.|||++|||.+++.++||+|++
T Consensus       131 ~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~  210 (277)
T PRK13652        131 RDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYV  210 (277)
T ss_pred             hcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEE
Confidence            36789999999999999999999999999999999999999999988877653    67999999999999999999999


Q ss_pred             EeCCeEeEecCCHHHHH
Q psy2684          78 LDMKKLFYYKGNFTLFK   94 (356)
Q Consensus        78 l~~g~~~~~~g~~~~~~   94 (356)
                      |++|+++. .|+.+++.
T Consensus       211 l~~G~i~~-~g~~~~~~  226 (277)
T PRK13652        211 MDKGRIVA-YGTVEEIF  226 (277)
T ss_pred             EECCeEEE-ECCHHHHh
Confidence            99999985 47666553

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.84  E-value=1.2e-20  Score=182.20  Aligned_cols=91  Identities=30%  Similarity=0.372  Sum_probs=81.5

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||+||++||++|+.+|++|||||||++||+.++..+.++|.++    +.|||+||||++++..+||+|++
T Consensus       158 ~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~v  237 (400)
T PRK10070        158 AHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAI  237 (400)
T ss_pred             hhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEE
Confidence            46789999999999999999999999999999999999999999888877653    67999999999999999999999


Q ss_pred             EeCCeEeEecCCHHHH
Q psy2684          78 LDMKKLFYYKGNFTLF   93 (356)
Q Consensus        78 l~~g~~~~~~g~~~~~   93 (356)
                      |++|+++. .|+.+.+
T Consensus       238 L~~G~i~~-~g~~~~l  252 (400)
T PRK10070        238 MQNGEVVQ-VGTPDEI  252 (400)
T ss_pred             EECCEEEe-cCCHHHH
Confidence            99999975 4555444

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.84  E-value=9e-21  Score=170.76  Aligned_cols=82  Identities=32%  Similarity=0.434  Sum_probs=75.3

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      ++++.+|||||+||++||++|+.+|++|||||||++||+.+++++.++++++    +.|||+||||.+++.. ||++++|
T Consensus       141 ~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~-~d~i~~l  219 (228)
T PRK10584        141 DHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRLRL  219 (228)
T ss_pred             hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEE
Confidence            5788999999999999999999999999999999999999999998888653    6799999999999855 9999999


Q ss_pred             eCCeEeE
Q psy2684          79 DMKKLFY   85 (356)
Q Consensus        79 ~~g~~~~   85 (356)
                      ++|+++.
T Consensus       220 ~~g~i~~  226 (228)
T PRK10584        220 VNGQLQE  226 (228)
T ss_pred             ECCEEEe
Confidence            9999864

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.84  E-value=1.2e-20  Score=172.52  Aligned_cols=89  Identities=28%  Similarity=0.400  Sum_probs=81.3

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEe
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLD   79 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~   79 (356)
                      .++++.+|||||+||++||++|+.+|++|||||||++||+.++.++.++|+++  +.|||+||||.+++..+||++++|+
T Consensus       141 ~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~  220 (251)
T PRK14249        141 LHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLL  220 (251)
T ss_pred             hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEe
Confidence            36788999999999999999999999999999999999999999998888765  4799999999999999999999999


Q ss_pred             CCeEeEecCCHH
Q psy2684          80 MKKLFYYKGNFT   91 (356)
Q Consensus        80 ~g~~~~~~g~~~   91 (356)
                      +|++..+ |+.+
T Consensus       221 ~G~i~~~-~~~~  231 (251)
T PRK14249        221 TGDLVEY-GRTG  231 (251)
T ss_pred             CCeEEEe-CCHH
Confidence            9999865 5443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	356
2iwh_A	986	Structure Of Yeast Elongation Factor 3 In Complex W		3e-21
2iwh_A	986	Structure Of Yeast Elongation Factor 3 In Complex W		1e-12
2ix8_A	976	Model For Eef3 Bound To An 80s Ribosome Length = 97		6e-21
2ix8_A	976	Model For Eef3 Bound To An 80s Ribosome Length = 97		1e-12
2iw3_A	986	Elongation Factor 3 In Complex With Adp Length = 98		7e-21
2iw3_A	986	Elongation Factor 3 In Complex With Adp Length = 98		1e-12
2ixf_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		6e-06
2ixe_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		6e-06
1oxs_C	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		8e-06
2ixg_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		2e-05
1oxx_K	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		3e-05
4g1u_C	266	X-Ray Structure Of The Bacterial Heme Transporter H		5e-05
1jj7_A	260	Crystal Structure Of The C-Terminal Atpase Domain O		9e-05
2nq2_C	253	An Inward-Facing Conformation Of A Putative Metal-C		2e-04
1xmi_A	291	Crystal Structure Of Human F508a Nbd1 Domain With A		3e-04
1z47_A	355	Structure Of The Atpase Subunit Cysa Of The Putativ		4e-04
3qf4_B	598	Crystal Structure Of A Heterodimeric Abc Transporte		4e-04
2pzg_A	241	Minimal Human Cftr First Nucleotide Binding Domain		5e-04
2pze_A	229	Minimal Human Cftr First Nucleotide Binding Domain		6e-04
3ozx_A	538	Crystal Structure Of Abce1 Of Sulfolubus Solfataric		8e-04
2pzf_A	228	Minimal Human Cftr First Nucleotide Binding Domain		9e-04

>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986

Iteration: 1
 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 102/232 (43%), Gaps = 53/232 (22%)
Query: 9   FSGGWRIRVSXXXXXXXXXXXXXXXXXXNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFL 68
            SGGW+++++                  NHLD   V WL NYL T   T + +SHD  FL
Sbjct: 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFL 608
Query: 69  NNICTDIIHLDMKKLFYYKGNFTLF-KKMYVQKRKELTKEYELQEKQIREMKSQGM-SKE 126
           +N+C  II+ +  KL  YKGNFT F KK    K  E     +L+ K       +G+ +K+
Sbjct: 609 DNVCEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQ 668
Query: 127 KAERQHSHKALKEQARKRVQXXXXXXXXXXXXXXREYIVKFRFXXXXXXXXXVLGLHDVT 186
           KA                                   IVK               + ++ 
Sbjct: 669 KA-----------------------------------IVK---------------VTNME 678
Query: 187 FGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
           F YPG  K  +  +NF   + SR+A++GPNG GKST +N+L GEL P  G+V
Sbjct: 679 FQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730

>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 232 PNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKF 291
           P   K  +  +NF   + SR+A++GPNG GKST +N+L GEL P  GE+      RI   
Sbjct: 682 PGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYI 741
Query: 292 DQHSGEHLFP--DDTPCEYLMKLF 313
            QH+  H+    D TP EY+   F
Sbjct: 742 KQHAFAHIESHLDKTPSEYIQWRF 765

>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976

Iteration: 1
 Score = 98.2 bits (243), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 99/232 (42%), Gaps = 53/232 (22%)
Query: 9   FSGGWRIRVSXXXXXXXXXXXXXXXXXXNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFL 68
            SGGW+ +++                  NHLD   V WL NYL T   T + +SHD  FL
Sbjct: 543 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFL 602
Query: 69  NNICTDIIHLDMKKLFYYKGNFTLF-KKMYVQKRKELTKEYELQEKQIREMKSQGM-SKE 126
           +N+C  II+ +  KL  YKGNFT F KK    K  E     +L+ K       +G+ +K+
Sbjct: 603 DNVCEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQ 662
Query: 127 KAERQHSHKALKEQARKRVQXXXXXXXXXXXXXXREYIVKFRFXXXXXXXXXVLGLHDVT 186
           KA                                                  ++ + +  
Sbjct: 663 KA--------------------------------------------------IVKVTNXE 672
Query: 187 FGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
           F YPG  K  +  +NF   + SR+A++GPNG GKST +N+L GEL P  G+V
Sbjct: 673 FQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 724

>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 232 PNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKF 291
           P   K  +  +NF   + SR+A++GPNG GKST +N+L GEL P  GE+      RI   
Sbjct: 676 PGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYI 735
Query: 292 DQHSGEHLFP--DDTPCEYLMKLF 313
            QH+  H+    D TP EY+   F
Sbjct: 736 KQHAFAHIESHLDKTPSEYIQWRF 759

>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986

Iteration: 1
 Score = 98.2 bits (243), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 99/232 (42%), Gaps = 53/232 (22%)
Query: 9   FSGGWRIRVSXXXXXXXXXXXXXXXXXXNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFL 68
            SGGW+ +++                  NHLD   V WL NYL T   T + +SHD  FL
Sbjct: 549 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFL 608
Query: 69  NNICTDIIHLDMKKLFYYKGNFTLF-KKMYVQKRKELTKEYELQEKQIREMKSQGM-SKE 126
           +N+C  II+ +  KL  YKGNFT F KK    K  E     +L+ K       +G+ +K+
Sbjct: 609 DNVCEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQ 668
Query: 127 KAERQHSHKALKEQARKRVQXXXXXXXXXXXXXXREYIVKFRFXXXXXXXXXVLGLHDVT 186
           KA                                                  ++ + +  
Sbjct: 669 KA--------------------------------------------------IVKVTNXE 678
Query: 187 FGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
           F YPG  K  +  +NF   + SR+A++GPNG GKST +N+L GEL P  G+V
Sbjct: 679 FQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730

>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 232 PNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKF 291
           P   K  +  +NF   + SR+A++GPNG GKST +N+L GEL P  GE+      RI   
Sbjct: 682 PGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYI 741
Query: 292 DQHSGEHLFP--DDTPCEYLMKLF 313
            QH+  H+    D TP EY+   F
Sbjct: 742 KQHAFAHIESHLDKTPSEYIQWRF 765

>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 75/178 (42%), Gaps = 39/178 (21%)
Query: 184 DVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241
           DV+F YP      +L+ + F L      ALVGPNG GKST   LL+    P  GKVLL+ 
Sbjct: 21  DVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDG 80
Query: 242 ---VNFGLD-MESRVALVG--PNGIGKSTFLNLLKGELTPNKGELRKSPRL-RIGKFDQH 294
              V +    + ++VA VG  P   G+S   N+  G        L ++P +  I      
Sbjct: 81  EPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYG--------LTRTPTMEEITAVAME 132
Query: 295 SGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
           SG H F    P  Y              ++G  G            LSGGQ+  VALA
Sbjct: 133 SGAHDFISGFPQGY------------DTEVGETG----------NQLSGGQRQAVALA 168

>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 57/180 (31%), Positives = 75/180 (41%), Gaps = 39/180 (21%)
Query: 182 LHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
             DV+F YP      +L+ + F L      ALVGPNG GKST   LL+    P  GKVLL
Sbjct: 19  FQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLL 78
Query: 240 EK---VNFGLD-MESRVALVG--PNGIGKSTFLNLLKGELTPNKGELRKSPRL-RIGKFD 292
           +    V +    + ++VA VG  P   G+S   N+  G        L ++P +  I    
Sbjct: 79  DGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYG--------LTRTPTMEEITAVA 130
Query: 293 QHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
             SG H F    P  Y              ++G  G            LSGGQ+  VALA
Sbjct: 131 MESGAHDFISGFPQGY------------DTEVGETG----------NQLSGGQRQAVALA 168

>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 68/141 (48%), Gaps = 25/141 (17%)
Query: 234 KGKVL-LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRL------ 286
           KGKV+ L+ VN  ++   R  ++GP+G GK+TF+ ++ G   P+ GEL    RL      
Sbjct: 15  KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGK 74
Query: 287 --------RIGKFDQHSGEHLFPDDTPCEYL------MKLFNLPYEKSRRQLG-MFGLPS 331
                   +IG   Q     L+P+ T  E +      MK+      K   ++  +  +  
Sbjct: 75  LIVPPEDRKIGMVFQTWA--LYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH 132
Query: 332 YAHTIPIRDLSGGQKARVALA 352
             +  P R+LSGGQ+ RVALA
Sbjct: 133 VLNHFP-RELSGGQQQRVALA 152

>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 61/135 (45%), Gaps = 17/135 (12%)
Query: 183 HDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
            DV+F YP      +L+ + F L      ALVGPNG GKST   LL+    P  GKVLL+
Sbjct: 20  QDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLD 79
Query: 241 K---VNFGLD-MESRVALVG--PNGIGKSTFLNLLKGELTPNKGELRKSPRL-RIGKFDQ 293
               V +    + ++VA VG  P   G+S   N+  G        L ++P +  I     
Sbjct: 80  GEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYG--------LTRTPTMEEITAVAM 131
Query: 294 HSGEHLFPDDTPCEY 308
            SG H F    P  Y
Sbjct: 132 ESGAHDFISGFPQGY 146

>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 25/141 (17%)
Query: 234 KGKVL-LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRL------ 286
           KGKV+ L+ VN  ++   R  ++GP+G GK+TF+ ++ G   P+ GEL    RL      
Sbjct: 15  KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGK 74
Query: 287 --------RIGKFDQHSGEHLFPDDTPCEYL------MKLFNLPYEKSRRQLG-MFGLPS 331
                   +IG   Q     L+P+ T  E +      MK+      K   ++  +  +  
Sbjct: 75  LIVPPEDRKIGMVFQTWA--LYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH 132
Query: 332 YAHTIPIRDLSGGQKARVALA 352
             +  P R+LSG Q+ RVALA
Sbjct: 133 VLNHFP-RELSGAQQQRVALA 152

>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 236 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE 279
           + L+  V+  +     VA++GPNG GKST L LL G L+P+ GE
Sbjct: 24  QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGE 67

>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 183 HDVTFGYPGGK--VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
            DV+F YP     ++L+ + F L      ALVGPNG GKST   LL+    P  G++LL+
Sbjct: 18  QDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLD 77

>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
            L + ++ F Y     L +++NF L+    +A++G NG GKST L+LL G   P +GK+
Sbjct: 4   ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62

>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 25/133 (18%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRI------ 288
           G  +L+ +NF ++    +A+ G  G GK++ L ++ GEL P++G+++ S R+        
Sbjct: 50  GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSW 109
Query: 289 ---GKFDQHSGEHLFPDDTPCEYLMKLFNLP------YEKSRRQLGMFGLPSYAHTIPIR 339
              G   ++    +  D+     ++K   L        EK    LG  G+          
Sbjct: 110 IMPGTIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT--------- 160
Query: 340 DLSGGQKARVALA 352
            LSGGQ+AR++LA
Sbjct: 161 -LSGGQRARISLA 172

>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 189 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
           YPGG   +  V+F +     V L+GP+G GK+T L L+ G   P KG V +
Sbjct: 24  YPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWI 74

>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 37/61 (60%)
Query: 184 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN 243
           +V F Y   K +L+ + F +    +VALVGP G GK+T +NLL      ++G++L++ ++
Sbjct: 359 NVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGID 418
Query: 244 F 244
Sbjct: 419 I 419

>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 25/133 (18%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRI------ 288
           G  +L+ +NF ++    +A+ G  G GK++ L ++ GEL P++G+++ S R+        
Sbjct: 32  GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSW 91
Query: 289 ---GKFDQHSGEHLFPDDTPCEYLMKLFNLP------YEKSRRQLGMFGLPSYAHTIPIR 339
              G   ++    +  D+     ++K   L        EK    LG  G+          
Sbjct: 92  IMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT--------- 142
Query: 340 DLSGGQKARVALA 352
            LSGGQ+AR++LA
Sbjct: 143 -LSGGQRARISLA 154

>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 25/133 (18%)
Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRI------ 288
           G  +L+ +NF ++    +A+ G  G GK++ L ++ GEL P++G+++ S R+        
Sbjct: 20  GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSW 79
Query: 289 ---GKFDQHSGEHLFPDDTPCEYLMKLFNLP------YEKSRRQLGMFGLPSYAHTIPIR 339
              G   ++    +  D+     ++K   L        EK    LG  G+          
Sbjct: 80  IMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT--------- 130
Query: 340 DLSGGQKARVALA 352
            LSGGQ+AR++LA
Sbjct: 131 -LSGGQRARISLA 142

>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 209 VALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241
           + ++GPNGIGK+TF  +L GE+T ++G V  EK
Sbjct: 297 IGILGPNGIGKTTFARILVGEITADEGSVTPEK 329

>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 182 LHDVT-FGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
           + +VT F   GG  +L+ +NF ++    +A+ G  G GK++ L ++ GEL P++GK+
Sbjct: 9   MENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 65

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	356
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	7e-71
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	1e-35
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	3e-15
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	7e-32
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	1e-17
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	1e-10
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	7e-28
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	3e-16
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	4e-09
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	1e-22
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	3e-15
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	2e-10
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	5e-22
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	2e-16
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	2e-06
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	1e-18
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	2e-11
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	1e-13
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	2e-10
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	1e-13
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	5e-06
1sgw_A	214	Putative ABC transporter; structural genomics, P p	3e-12
1sgw_A	214	Putative ABC transporter; structural genomics, P p	2e-10
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	5e-12
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	4e-10
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	2e-10
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	3e-09
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	2e-10
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	7e-10
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	9e-09
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	1e-09
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	2e-06
1g6h_A	257	High-affinity branched-chain amino acid transport	2e-09
1g6h_A	257	High-affinity branched-chain amino acid transport	6e-07
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	5e-09
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	9e-05
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	5e-09
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	6e-06
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	9e-09
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	1e-05
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	3e-04
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	1e-08
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	2e-05
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	2e-08
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	2e-04
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	2e-08
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	3e-05
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	4e-08
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	8e-05
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	9e-04
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	5e-08
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	2e-04
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	7e-08
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	6e-05
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	7e-04
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	7e-08
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	2e-06
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	7e-08
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	4e-04
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	5e-04
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	1e-07
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	1e-05
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	1e-07
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	8e-05
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	1e-07
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	4e-07
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	3e-06
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	2e-05
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	5e-04
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	1e-07
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	6e-05
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	3e-07
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	1e-06
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	3e-07
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
1b0u_A	262	Histidine permease; ABC transporter, transport pro	6e-07
1b0u_A	262	Histidine permease; ABC transporter, transport pro	6e-05
2ghi_A	260	Transport protein; multidrug resistance protein, M	6e-07
2ghi_A	260	Transport protein; multidrug resistance protein, M	5e-04
2ghi_A	260	Transport protein; multidrug resistance protein, M	6e-04
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	8e-07
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	8e-07
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	4e-06
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	2e-06
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	3e-05
1ji0_A	240	ABC transporter; ATP binding protein, structural g	2e-06
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	3e-06
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	5e-06
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	4e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	7e-06
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	1e-05
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	1e-04
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	1e-05
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	6e-05
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	4e-04
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	1e-04
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	2e-04
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	3e-04
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	7e-04
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	8e-04
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	9e-04

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score =  237 bits (606), Expect = 7e-71
 Identities = 97/361 (26%), Positives = 136/361 (37%), Gaps = 106/361 (29%)

Query: 1   MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLV 60
           M        SGGW+++++LARA+     +LLLDEPTNHLD   V WL NYL T   T + 
Sbjct: 541 MIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSIT 600

Query: 61  VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKS 120
           +SHD  FL+N+C  II+ +  KL  YKGNFT F                           
Sbjct: 601 ISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFV-------------------------- 634

Query: 121 QGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYL----- 175
               K+        KA +E +   ++                    F+FP P YL     
Sbjct: 635 ----KKCPAA----KAYEELSNTDLE--------------------FKFPEPGYLEGVKT 666

Query: 176 -PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK 234
               ++ + ++ F YPG                                           
Sbjct: 667 KQKAIVKVTNMEFQYPGTS----------------------------------------- 685

Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQH 294
            K  +  +NF   + SR+A++GPNG GKST +N+L GEL P  GE+      RI    QH
Sbjct: 686 -KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQH 744

Query: 295 SGEHL--FPDDTPCEYLMKLFNL--PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVA 350
           +  H+    D TP EY+   F      E   R               I  + G  +    
Sbjct: 745 AFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAG 804

Query: 351 L 351
           +
Sbjct: 805 I 805

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score =  137 bits (345), Expect = 1e-35
 Identities = 21/91 (23%), Positives = 49/91 (53%)

Query: 1   MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLV 60
           +     +  SGG ++++ LA   +  P L++LDEPTN+LD +++  L   L+ ++  +++
Sbjct: 894 VSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVII 953

Query: 61  VSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 91
           ++H   F  N+  ++  +   ++     N+ 
Sbjct: 954 ITHSAEFTKNLTEEVWAVKDGRMTPSGHNWV 984

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 76.2 bits (187), Expect = 3e-15
 Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 4/122 (3%)

Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQH 294
            K+LL K    L    R  + GPNG GKST +  +                 R   + +H
Sbjct: 447 AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDG---FPTQEECRTV-YVEH 502

Query: 295 SGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAEL 354
             +    D +  +++ +      E  + +L  FG       +PI  LSGG K ++ALA  
Sbjct: 503 DIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARA 562

Query: 355 TL 356
            L
Sbjct: 563 VL 564

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score =  125 bits (315), Expect = 7e-32
 Identities = 73/356 (20%), Positives = 124/356 (34%), Gaps = 101/356 (28%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA---VIWLDNYLQTWKKTLL 59
           ++   + SGG   RV++A AL  +      DEP+++LD+     V  +   L    K +L
Sbjct: 223 DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVL 282

Query: 60  VVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMK 119
           VV HD + L+ +  D+IH+    ++   G + +F                 + K  R   
Sbjct: 283 VVEHDLAVLDYLS-DVIHV----VYGEPGVYGIF----------------SKPKGTRNGI 321

Query: 120 SQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPV 179
           ++ +     +         E  R R  +    +  E ++  RE +V++      Y     
Sbjct: 322 NEFLQGYLKD---------ENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDY----- 367

Query: 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
                       G   LE     +     + +VGPNGIGK+TF+ +L G   P +GKV  
Sbjct: 368 ------------GSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW 415

Query: 240 EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHL 299
           +                                             L +    Q+     
Sbjct: 416 D---------------------------------------------LTVAYKPQYI--KA 428

Query: 300 FPDDTPCEYLMKLFNLPYEKSRRQ---LGMFGLPSYAHTIPIRDLSGGQKARVALA 352
             + T  E L K+ +     +  +   L   G+          DLSGG+  RVA+A
Sbjct: 429 EYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNV-EDLSGGELQRVAIA 483

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 83.1 bits (206), Expect = 1e-17
 Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 4/83 (4%)

Query: 1   MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD----LNAVIWLDNYLQTWKK 56
           + +++ ++ SGG   RV++A  L  +  + LLDEP+ +LD    L     + + ++  +K
Sbjct: 464 LYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK 523

Query: 57  TLLVVSHDQSFLNNICTDIIHLD 79
           T LVV HD   ++ +   +I  +
Sbjct: 524 TALVVEHDVLMIDYVSDRLIVFE 546

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 61.9 bits (151), Expect = 1e-10
 Identities = 32/138 (23%), Positives = 50/138 (36%), Gaps = 22/138 (15%)

Query: 236 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHS 295
              +      +     V +VGPNG GK+T + +L G+L PN  E   S    I  F  + 
Sbjct: 104 NAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNE 163

Query: 296 GEHLFP----------------DDTP---CEYLMKLFNLPYEKSR--RQLGMFGLPSYAH 334
            ++ F                 D  P      + +L     E  +    +    L +   
Sbjct: 164 LQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELEN-VL 222

Query: 335 TIPIRDLSGGQKARVALA 352
              +  LSGG+  RVA+A
Sbjct: 223 DRELHQLSGGELQRVAIA 240

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score =  113 bits (284), Expect = 7e-28
 Identities = 64/359 (17%), Positives = 109/359 (30%), Gaps = 103/359 (28%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK--KTLLV 60
            K     SGG   R+ +A +L  E  + + D+P+++LD+   + +   ++     K ++V
Sbjct: 133 NKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIV 192

Query: 61  VSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKS 120
           V HD   L+ +   I  +  +   Y  G  +                             
Sbjct: 193 VDHDLIVLDYLTDLIHIIYGESSVY--GRVS----------------------------- 221

Query: 121 QGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVL 180
               K  A R   +  LK        K   DE K +L++  +  +               
Sbjct: 222 ----KSYAARVGINNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWT---- 273

Query: 181 GLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
                      G   L   N        + ++GPNGIGK+TF  +L GE+T ++G V  E
Sbjct: 274 -----KIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPE 328

Query: 241 KVNFG-------LDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQ 293
           K            + +  V                                       + 
Sbjct: 329 KQILSYKPQRIFPNYDGTVQQY-----------------------------------LEN 353

Query: 294 HSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
            S + L       E + K  NL                      + DLSGG+  ++ +A
Sbjct: 354 ASKDALSTSSWFFEEVTKRLNLHRLLESN---------------VNDLSGGELQKLYIA 397

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 78.9 bits (195), Expect = 3e-16
 Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 4/83 (4%)

Query: 1   MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLN--AVIW--LDNYLQTWKK 56
           + E +  + SGG   ++ +A  L  E  L +LD+P+++LD+    ++   +    +  K 
Sbjct: 378 LLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKA 437

Query: 57  TLLVVSHDQSFLNNICTDIIHLD 79
              ++ HD S  + I   II   
Sbjct: 438 VTFIIDHDLSIHDYIADRIIVFK 460

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 26/144 (18%), Positives = 52/144 (36%), Gaps = 36/144 (25%)

Query: 231 TPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE----------L 280
           TP    +              + ++G NG+GK+T L +L GE+ PN G+          L
Sbjct: 21  TPKNNTI--------------LGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVL 66

Query: 281 RKSPRLRIGKFDQHSGEHLFP-------DDTPCEYLMKLFNL---PYEKSRRQLGMFGLP 330
           ++     I  + +    +           +   ++L    N      ++  ++  +  L 
Sbjct: 67  KRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELL 126

Query: 331 SYAHTI--PIRDLSGGQKARVALA 352
           +  +        LSGG   R+ +A
Sbjct: 127 NMTNLWNKDANILSGGGLQRLLVA 150

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 97.8 bits (244), Expect = 1e-22
 Identities = 51/353 (14%), Positives = 106/353 (30%), Gaps = 92/353 (26%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK---KTLL 59
           ++  ++ SGG   R ++  +   E  + + DEP+++LD+   +     +++     K ++
Sbjct: 216 KRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVI 275

Query: 60  VVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMK 119
            V HD S L+ +   +  +      Y  G  TL   +     +E    +         ++
Sbjct: 276 CVEHDLSVLDYLSDFVCIIYGVPSVY--GVVTLPASV-----REGINIFLDGHIPAENLR 328

Query: 120 SQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPV 179
                                  + +Q    D  ++L          +            
Sbjct: 329 F--------------------RTEALQFRIADATEDLQNDSASRAFSYPS---------- 358

Query: 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
                       G  +L            + ++G NG GK+T + LL G L P++G+ + 
Sbjct: 359 -------LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIP 411

Query: 240 EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHL 299
                                                K  +   P+ +I      +   L
Sbjct: 412 -------------------------------------KLNVSMKPQ-KIAPKFPGTVRQL 433

Query: 300 FPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
           F      ++L        +     +    +         + LSGG+  RVA+ 
Sbjct: 434 FFKKIRGQFLNP------QFQTDVVKPLRIDDIIDQEV-QHLSGGELQRVAIV 479

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 75.8 bits (187), Expect = 3e-15
 Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 6/96 (6%)

Query: 7   KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD----LNAVIWLDNYLQTWKKTLLVVS 62
           +  SGG   RV++  AL +   + L+DEP+ +LD    +     +  ++   KKT  +V 
Sbjct: 466 QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVE 525

Query: 63  HDQSFLNNICTDIIHLDMK--KLFYYKGNFTLFKKM 96
           HD      +   +I  +    K  + +   +L    
Sbjct: 526 HDFIMATYLADKVIVFEGIPSKNAHARAPESLLTGC 561

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 37/178 (20%), Positives = 53/178 (29%), Gaps = 23/178 (12%)

Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
           P      VT  Y      L            + LVG NGIGKST L +L G+  PN G+ 
Sbjct: 76  PTNLEAHVTHRYSANSFKL-HRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134

Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR---LRIGKFDQH 294
                                   +         EL     ++ +      ++    D  
Sbjct: 135 DDP------------------PEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNI 176

Query: 295 SGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
                 P     E L        E  +R + +  L +      I  LSGG+  R A+ 
Sbjct: 177 PRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKR-DIEKLSGGELQRFAIG 233

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 96.2 bits (240), Expect = 5e-22
 Identities = 73/352 (20%), Positives = 116/352 (32%), Gaps = 103/352 (29%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK---KTLLVVSHD 64
             SGG   RV++A AL    T    DEP+++LD+   +     ++      K++LVV HD
Sbjct: 158 HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHD 217

Query: 65  QSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMS 124
            + L+ +  DIIH+                 +Y              E  +  + SQ   
Sbjct: 218 LAVLDYLS-DIIHV-----------------VY-------------GEPGVYGIFSQPKG 246

Query: 125 KEKAERQHSHKALK-EQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLGLH 183
                 +     LK E  R R  +    +  E +E  RE +V +                
Sbjct: 247 TRNGINEFLRGYLKDENVRFRPYEIKFTKTGERVEIERETLVTYP--------------- 291

Query: 184 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN 243
                   G   LE     +     + +VGPNGIGK+TF+ +L G   P +GK+  +   
Sbjct: 292 --RLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD--- 346

Query: 244 FGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDD 303
                                                     L +    Q+       + 
Sbjct: 347 ------------------------------------------LTVAYKPQYI--KADYEG 362

Query: 304 TPCEYLMKLFNLPYEKSRRQ---LGMFGLPSYAHTIPIRDLSGGQKARVALA 352
           T  E L K+       +  +   L   G+          +LSGG+  RVA+A
Sbjct: 363 TVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREV-NELSGGELQRVAIA 413

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 79.3 bits (196), Expect = 2e-16
 Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 4/77 (5%)

Query: 7   KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD----LNAVIWLDNYLQTWKKTLLVVS 62
            E SGG   RV++A  L  +  + LLDEP+ +LD    L     + + ++  +KT LVV 
Sbjct: 400 NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE 459

Query: 63  HDQSFLNNICTDIIHLD 79
           HD   ++ +   ++  +
Sbjct: 460 HDVLMIDYVSDRLMVFE 476

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 41/182 (22%), Positives = 66/182 (36%), Gaps = 50/182 (27%)

Query: 184 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN------KGKV 237
           D    Y G    +      +     V +VGPNG GKST + +L G+L PN          
Sbjct: 26  DCVHRY-GVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDG 84

Query: 238 LLEKVNFGLDMES-----RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFD 292
           ++     G ++++     +   + P  + K  +++L+              P+   GK  
Sbjct: 85  VIRAFR-GNELQNYFEKLKNGEIRP--VVKPQYVDLI--------------PKAVKGKV- 126

Query: 293 QHSGEHLFPDDTP--CEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVA 350
               E L   D     E ++K   L     R                I+ LSGG+  RVA
Sbjct: 127 ---IELLKKADETGKLEEVVKALELENVLER---------------EIQHLSGGELQRVA 168

Query: 351 LA 352
           +A
Sbjct: 169 IA 170

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score = 83.8 bits (208), Expect = 1e-18
 Identities = 38/194 (19%), Positives = 69/194 (35%), Gaps = 43/194 (22%)

Query: 170 PNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE 229
              P     ++ L  +      GK +L+K+++ +    +  L G NG GK+T LN+L   
Sbjct: 12  GLVPRGSHMLIQLDQIGRMK-QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAY 70

Query: 230 LTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIG 289
                G V L    FG                         G++  +   +R+     IG
Sbjct: 71  EPATSGTVNL----FGKMP----------------------GKVGYSAETVRQ----HIG 100

Query: 290 KFDQHSGEHLFPDDTPCEYLM-------KLFNLPYEKSRRQ----LGMFGLPSYAHTIPI 338
                  E     +   + ++        ++    ++ R +    L + G+ + A    I
Sbjct: 101 FVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQ-YI 159

Query: 339 RDLSGGQKARVALA 352
             LS G+K RV +A
Sbjct: 160 GYLSTGEKQRVMIA 173

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score = 62.6 bits (153), Expect = 2e-11
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 8/87 (9%)

Query: 1   MQEKSTKEF---SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK- 56
           M  K+ +     S G + RV +ARAL  +P +L+LDEP   LD  A   L + L +    
Sbjct: 151 MSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS 210

Query: 57  ----TLLVVSHDQSFLNNICTDIIHLD 79
                ++ V+H    +    + I+ L 
Sbjct: 211 YPTLAMIYVTHFIEEITANFSKILLLK 237

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score = 68.7 bits (169), Expect = 1e-13
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
             L + ++ F Y     L +++NF L+    +A++G NG GKST L+LL G   P +GK+
Sbjct: 3   KALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62

Query: 238 LLEK 241
            + +
Sbjct: 63  EVYQ 66

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score = 59.5 bits (145), Expect = 2e-10
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 4/66 (6%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLN---AVI-WLDNYLQTWKKTL 58
           ++     SGG R  + +ARA+  E  L+LLDEPT+ LDL     V+  L +  Q+   T+
Sbjct: 123 KREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTV 182

Query: 59  LVVSHD 64
           +  +H 
Sbjct: 183 VFTTHQ 188

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score = 69.1 bits (170), Expect = 1e-13
 Identities = 39/187 (20%), Positives = 68/187 (36%), Gaps = 49/187 (26%)

Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
            +L + ++ + Y  G   L+ +N  +      A++G NG+GKST      G L P+ G++
Sbjct: 6   YILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65

Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGE 297
           L +       ++                             +LR+     IG   Q    
Sbjct: 66  LFD----NKPIDYS----------------------RKGIMKLRE----SIGIVFQ---- 91

Query: 298 HLFPDD-----TPCE---YLMKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQ 345
              PD+     +  +   +      LP ++ R++    L   G+           LS GQ
Sbjct: 92  --DPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHC-LSFGQ 148

Query: 346 KARVALA 352
           K RVA+A
Sbjct: 149 KKRVAIA 155

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score = 46.4 bits (111), Expect = 5e-06
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 8/83 (9%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD------LNAVIWLDNYLQTWKK 56
           +K T   S G + RV++A  L +EP +L+LDEPT  LD      +  ++      +    
Sbjct: 138 DKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLL--VEMQKELGI 195

Query: 57  TLLVVSHDQSFLNNICTDIIHLD 79
           T+++ +HD   +   C ++  + 
Sbjct: 196 TIIIATHDIDIVPLYCDNVFVMK 218

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score = 64.5 bits (158), Expect = 3e-12
 Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 15/129 (11%)

Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR------KSPRLRI 288
            K +LE++   ++  + V   GPNGIGK+T L  +   L P KGE+          + +I
Sbjct: 21  DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKI 80

Query: 289 GKFDQHSGEHLFPDDTPCEYLM---KLFNLPYEKSR--RQLGMFGLPSYAHTIPIRDLSG 343
               +     +    +  +YL     L+ +   K+     L    +        + +LS 
Sbjct: 81  FFLPEEII--VPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKK--KLGELSQ 136

Query: 344 GQKARVALA 352
           G   RV LA
Sbjct: 137 GTIRRVQLA 145

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score = 59.1 bits (144), Expect = 2e-10
 Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 8/81 (9%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAV--IW--LDNYLQTWKKTL 58
           +K   E S G   RV LA  L +   + +LD+P   +D ++   +   +   L+     +
Sbjct: 128 KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVI 187

Query: 59  LVVSHDQSFLNNICTDIIHLD 79
           +    + S     C    +L 
Sbjct: 188 ISSREELS----YCDVNENLH 204

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score = 64.3 bits (157), Expect = 5e-12
 Identities = 15/65 (23%), Positives = 33/65 (50%)

Query: 1   MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLV 60
           +  +   + S G  + V  + AL  +P ++ LDEP  ++D      +  Y++ + K  ++
Sbjct: 121 ILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGIL 180

Query: 61  VSHDQ 65
           V+H+ 
Sbjct: 181 VTHEL 185

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score = 58.9 bits (143), Expect = 4e-10
 Identities = 30/143 (20%), Positives = 46/143 (32%), Gaps = 16/143 (11%)

Query: 221 TFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 280
              N+          +  LE +N  ++ E +V ++GPNG GK+T L  + G L P  G +
Sbjct: 3   QLKNVGITLSGKGYERFSLENINLEVNGE-KVIILGPNGSGKTTLLRAISG-LLPYSGNI 60

Query: 281 R------KSPRLRIGKFDQHSGEHLFP----DDTPCEYLMKLFNLPYEKSRRQLGMFGLP 330
                  +  R  I         +       D        +L  L  +     L    L 
Sbjct: 61  FINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIV--YLYEELKGLDRDLFLEMLKALKLG 118

Query: 331 -SYAHTIPIRDLSGGQKARVALA 352
                      LS GQ   V  +
Sbjct: 119 EEILRRKL-YKLSAGQSVLVRTS 140

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score = 59.5 bits (145), Expect = 2e-10
 Identities = 23/116 (19%), Positives = 42/116 (36%), Gaps = 20/116 (17%)

Query: 254 LVGPNGIGKSTFLNLLKGELTPNKGELR-------KSP---RLRIGKFDQHSGEHLFPDD 303
           L+GPNG GK+T L ++   + P+ G +        + P   R  I    + +G   + + 
Sbjct: 46  LIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAG--AYRNM 103

Query: 304 TPCEYLM---KLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALA 352
              EYL      +     +          + GL        +   S G   ++ +A
Sbjct: 104 QGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKD-RVSTYSKGMVRKLLIA 158

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score = 56.0 bits (136), Expect = 3e-09
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 3/76 (3%)

Query: 4   KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK---KTLLV 60
                +S G   ++ +ARAL + P L +LDEPT+ LD+     +   L+       T+LV
Sbjct: 142 DRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILV 201

Query: 61  VSHDQSFLNNICTDII 76
            SH+   +  +C  I 
Sbjct: 202 SSHNMLEVEFLCDRIA 217

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score = 59.1 bits (144), Expect = 2e-10
 Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 13/70 (18%)

Query: 10  SGGWRIRVSLARAL-------FLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK---TLL 59
           SGG   RV LA  +            LLLLDEP N LD+     LD  L    +    ++
Sbjct: 128 SGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIV 187

Query: 60  VVSHDQSFLN 69
           + SHD   LN
Sbjct: 188 MSSHD---LN 194

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score = 58.0 bits (141), Expect = 7e-10
 Identities = 33/132 (25%), Positives = 46/132 (34%), Gaps = 19/132 (14%)

Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--------KSPR- 285
               L  ++  +     + LVGPNG GKST L  + G +T  KG ++         S   
Sbjct: 12  ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSATK 70

Query: 286 --LRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSR---RQLGMFGLPSYAHTIPIRD 340
             L      Q       P  TP  + + L      ++       G   L           
Sbjct: 71  LALHRAYLSQQ---QTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGR-STNQ 126

Query: 341 LSGGQKARVALA 352
           LSGG+  RV LA
Sbjct: 127 LSGGEWQRVRLA 138

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score = 54.5 bits (132), Expect = 9e-09
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 6/64 (9%)

Query: 177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGK 236
             V+ L DV          L  ++  +     + LVGPNG GKST L  + G +T  KG 
Sbjct: 2   SIVMQLQDV-----AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGS 55

Query: 237 VLLE 240
           +   
Sbjct: 56  IQFA 59

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score = 57.2 bits (139), Expect = 1e-09
 Identities = 41/195 (21%), Positives = 66/195 (33%), Gaps = 73/195 (37%)

Query: 182 LHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
           + +V+  +  G    K  LE V+  ++    + + G  G GKST L ++ G + P  G V
Sbjct: 5   VVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDV 64

Query: 238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGE 297
           L +                    G+                E+R+     IG   Q    
Sbjct: 65  LYD--------------------GERKKGY-----------EIRR----NIGIAFQ---- 85

Query: 298 HLFPDDTPCEYLMKLF-------------NL--PYEKSRR---QLGMFGLP--SYAHTIP 337
             +P+D       + F             N     +        +   GL   S+   +P
Sbjct: 86  --YPED-------QFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP 136

Query: 338 IRDLSGGQKARVALA 352
              LSGG+K RVA+A
Sbjct: 137 F-FLSGGEKRRVAIA 150

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 3/80 (3%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA---VIWLDNYLQTWKKTLL 59
           ++     SGG + RV++A  +  EP +L+LDEP   LD      ++ +    +T  KT++
Sbjct: 133 DRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVI 192

Query: 60  VVSHDQSFLNNICTDIIHLD 79
           ++SHD   + N    ++ L+
Sbjct: 193 LISHDIETVINHVDRVVVLE 212

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257

 Score = 56.4 bits (137), Expect = 2e-09
 Identities = 43/187 (22%), Positives = 67/187 (35%), Gaps = 35/187 (18%)

Query: 176 PPPVLGLHDVT--FGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN 233
              +L   ++   FG       L+ V+  ++      ++GPNG GKST +N++ G L  +
Sbjct: 4   TMEILRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD 60

Query: 234 KGKVLLEKVNF-GLDMESRVALVGPNGIGKSTFLNL-LKGELTP--NKGELRKSPRLRIG 289
           +G+V  E  +    +           GI + TF       E+T   N         L IG
Sbjct: 61  EGRVYFENKDITNKEPAELYHY----GIVR-TFQTPQPLKEMTVLEN---------LLIG 106

Query: 290 KFDQHSGEHL----FPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQ 345
                    L    +    P E  M       EK+ + L    L          +LSGGQ
Sbjct: 107 -EICPGESPLNSLFYKKWIPKEEEMV------EKAFKILEFLKLSHLYDR-KAGELSGGQ 158

Query: 346 KARVALA 352
              V + 
Sbjct: 159 MKLVEIG 165

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257

 Score = 49.0 bits (118), Expect = 6e-07
 Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 3/73 (4%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPT---NHLDLNAVIWLDNYLQTWKKTLLVVSHDQS 66
           SGG    V + RAL   P ++++DEP         + +      L+    T L++ H   
Sbjct: 155 SGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD 214

Query: 67  FLNNICTDIIHLD 79
            + N    +  + 
Sbjct: 215 IVLNYIDHLYVMF 227

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score = 55.2 bits (134), Expect = 5e-09
 Identities = 19/61 (31%), Positives = 31/61 (50%)

Query: 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
           +L    V F Y   + +L  ++F     S +A  GP+G GKST  +LL+    P  G++ 
Sbjct: 1   MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60

Query: 239 L 239
           +
Sbjct: 61  I 61

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score = 42.5 bits (101), Expect = 9e-05
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
           SGG R R+++ARA    P +L+LDE T  LD
Sbjct: 141 SGGQRQRLAIARAFLRNPKILMLDEATASLD 171

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240

 Score = 55.2 bits (134), Expect = 5e-09
 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 12/73 (16%)

Query: 1   MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK---- 56
           + ++     SGG R RV+LARAL ++P LLLLDEP + +DL         L    +    
Sbjct: 119 LLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLK----TKGVLMEELRFVQR 174

Query: 57  ----TLLVVSHDQ 65
                +L V+HD 
Sbjct: 175 EFDVPILHVTHDL 187

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240

 Score = 46.0 bits (110), Expect = 6e-06
 Identities = 37/122 (30%), Positives = 51/122 (41%), Gaps = 31/122 (25%)

Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELR--------KSPRLR-IGKFDQHSGEHLFPD 302
             L+GP G GKS FL L+ G + P++GE+R          P  R IG   Q     LFP 
Sbjct: 27  CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYA--LFPH 84

Query: 303 DTPCEYLMKLF-NLPY-----------EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVA 350
                  + ++ N+ Y            + R      G+       P   LSGG++ RVA
Sbjct: 85  -------LSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP-ARLSGGERQRVA 136

Query: 351 LA 352
           LA
Sbjct: 137 LA 138

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score = 55.3 bits (134), Expect = 9e-09
 Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 12/64 (18%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--------TLLVV 61
           SGG + RV+LARAL   P +LL DEP   +D      +   L+T+ +        T + V
Sbjct: 147 SGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ----IRRELRTFVRQVHDEMGVTSVFV 202

Query: 62  SHDQ 65
           +HDQ
Sbjct: 203 THDQ 206

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 39/117 (33%), Positives = 57/117 (48%), Gaps = 19/117 (16%)

Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGEL--------RKSPRLR-IGKFDQHSGEHLFPD 302
           V L+GP+G GK+T L L+ G   P KG++           P+ R +G   Q+    LF  
Sbjct: 44  VGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYA--LFQH 101

Query: 303 DTPCE---YLMKLFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
            T  +   + ++   +P      + R  L    L SYA+  P  +LSGGQ+ RVALA
Sbjct: 102 MTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFP-HELSGGQQQRVALA 157

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
              V   YPGG   +  V+    +     V L+GP+G GK+T L L+ G   P KG V +
Sbjct: 17  FVGVEKIYPGGARSVRGVS--FQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWI 74

Query: 240 E 240
            
Sbjct: 75  G 75

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score = 54.0 bits (131), Expect = 1e-08
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 182 LHDVTFGY-PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
             ++ F Y P   V+L+ +N  +     + +VG +G GKST   L++    P  G+VL+
Sbjct: 10  FRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLI 68

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score = 44.4 bits (106), Expect = 2e-05
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
           SGG R R+++ARAL   P +L+ DE T+ LD
Sbjct: 147 SGGQRQRIAIARALVNNPKILIFDEATSALD 177

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score = 55.3 bits (134), Expect = 2e-08
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 10/89 (11%)

Query: 155 ELLEKPREYIVKFRFPNPPYLPPPVLG---LHDVTFGYPGGKVL-LEKVNFGLDMESRVA 210
            +L+  +E            +     G     +VTF YPG +V  L  +N  +     VA
Sbjct: 320 AILDSEQEK------DEGKRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVA 373

Query: 211 LVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
           LVG +G GKST  +L+      ++G +L+
Sbjct: 374 LVGRSGSGKSTIASLITRFYDIDEGHILM 402

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 22/101 (21%)

Query: 223 LNLLKGELT--------PNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT 274
           ++   G+L         P +    L  +N  +     VALVG +G GKST  +L+     
Sbjct: 335 IDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD 394

Query: 275 PNKGEL-----------RKSPRLRIGKFDQHSGEHLFPDDT 304
            ++G +             S R ++    Q+   HLF +DT
Sbjct: 395 IDEGHILMDGHDLREYTLASLRNQVALVSQNV--HLF-NDT 432

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598

 Score = 54.9 bits (133), Expect = 2e-08
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 10/93 (10%)

Query: 155 ELLEKPREYIVKFRFPNP-PYLPPPVLG---LHDVTFGYPGGKVLLEKVNFGLDMESRVA 210
           E+L+   E        +P       V G     +V F Y   K +L+ + F +    +VA
Sbjct: 332 EILDLEEE------KDDPDAVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVA 385

Query: 211 LVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN 243
           LVGP G GK+T +NLL      ++G++L++ ++
Sbjct: 386 LVGPTGSGKTTIVNLLMRFYDVDRGQILVDGID 418

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 14/55 (25%)

Query: 229 ELTPNKGKVLLEKVNFG------------LDME--SRVALVGPNGIGKSTFLNLL 269
           EL   +G++  + V F               ++   +VALVGP G GK+T +NLL
Sbjct: 347 ELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLL 401

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score = 53.7 bits (130), Expect = 5e-08
 Identities = 30/89 (33%), Positives = 38/89 (42%), Gaps = 10/89 (11%)

Query: 155 ELLEKPREYIVKFRFPNPPYLPPPVLG---LHDVTFGYPGG-KVLLEKVNFGLDMESRVA 210
            L++   E        N  Y    V G   + DVTF Y G  K  L  V+F +     VA
Sbjct: 320 GLMDLETER------DNGKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVA 373

Query: 211 LVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
           LVG +G GKST  NL       + G + L
Sbjct: 374 LVGRSGSGKSTIANLFTRFYDVDSGSICL 402

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 25/102 (24%), Positives = 36/102 (35%), Gaps = 29/102 (28%)

Query: 229 ELTPNKGKVLLEKVNFGLDMESR---------------VALVGPNGIGKSTFLNLLKGEL 273
           E     G+V ++ V F    + +               VALVG +G GKST  NL     
Sbjct: 334 EAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY 393

Query: 274 TPNKGEL-----------RKSPRLRIGKFDQHSGEHLFPDDT 304
             + G +             + R       Q+   HLF +DT
Sbjct: 394 DVDSGSICLDGHDVRDYKLTNLRRHFALVSQNV--HLF-NDT 432

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score = 52.2 bits (126), Expect = 7e-08
 Identities = 20/43 (46%), Positives = 27/43 (62%)

Query: 184 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 226
           +V F Y  G+  L+ V+F +     +ALVGP+G GKST L LL
Sbjct: 58  NVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLL 100

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 14/55 (25%)

Query: 229 ELTPNKGKVLLEKVNFGLDME--------------SRVALVGPNGIGKSTFLNLL 269
            L   KG++  E V+F                     +ALVGP+G GKST L LL
Sbjct: 46  PLRFQKGRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLL 100

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score = 39.9 bits (94), Expect = 7e-04
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
           SGG + RV++AR +   P ++LLDE T+ LD
Sbjct: 192 SGGEKQRVAIARTILKAPGIILLDEATSALD 222

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224

 Score = 51.3 bits (124), Expect = 7e-08
 Identities = 46/188 (24%), Positives = 78/188 (41%), Gaps = 51/188 (27%)

Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL-TPNKGK 236
            +L   ++     G ++L + ++  +     V+++G +G GKST L +L G L  P +GK
Sbjct: 3   EILRAENIKKVIRGYEIL-KGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAPTEGK 60

Query: 237 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIG-KFDQHS 295
           V LE    G +++                    + EL+     LR     ++G  F  H 
Sbjct: 61  VFLE----GKEVDY-----------------TNEKELS----LLR---NRKLGFVFQFH- 91

Query: 296 GEHLFPDDTPCEYLMKLFNLP--Y---------EKSRRQLGMFGLPSYAHTIPIRDLSGG 344
             +L P+ T  E ++    +P            E+    L   GL       P  +LSGG
Sbjct: 92  --YLIPELTALENVI----VPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKP-YELSGG 144

Query: 345 QKARVALA 352
           ++ RVA+A
Sbjct: 145 EQQRVAIA 152

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224

 Score = 47.1 bits (113), Expect = 2e-06
 Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 3/61 (4%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDL---NAVIWLDNYLQTWKKTLLVVSHD 64
           E SGG + RV++ARAL  EP LL  DEPT +LD      V+ +   +     ++++V+H+
Sbjct: 140 ELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHE 199

Query: 65  Q 65
           +
Sbjct: 200 R 200

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score = 52.6 bits (127), Expect = 7e-08
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 12/66 (18%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--------TLL 59
           E SGG + R +LARAL  +P L+LLDEP + LD      L   ++            + +
Sbjct: 138 ELSGGQQQRAALARALAPDPELILLDEPFSALDEQ----LRRQIREDMIAALRANGKSAV 193

Query: 60  VVSHDQ 65
            VSHD+
Sbjct: 194 FVSHDR 199

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 7/86 (8%)

Query: 178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
             L +  ++  +     +L  ++  LD    + ++G +G GK+T L  L G   P+ G++
Sbjct: 3   AALHIGHLSKSF-QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61

Query: 238 LLEKVNFGLDMESRVALVGPN--GIG 261
            L     G  + S+   +      +G
Sbjct: 62  SLS----GKTIFSKNTNLPVRERRLG 83

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score = 40.6 bits (96), Expect = 5e-04
 Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 19/119 (15%)

Query: 252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH-----------LF 300
           + ++G +G GK+T L  L G   P+ GE+  S +    K                   LF
Sbjct: 33  LFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLF 92

Query: 301 PDDTPCE---YLMKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALA 352
           P  T      Y +        + R++    L + G+   A   P  +LSGGQ+ R ALA
Sbjct: 93  PHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYP-HELSGGQQQRAALA 150

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271

 Score = 51.8 bits (125), Expect = 1e-07
 Identities = 34/96 (35%), Positives = 44/96 (45%), Gaps = 9/96 (9%)

Query: 170 PNPPYLPPPVLG---LHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLN 224
            +    P  + G     DV+F YP      +L+ + F L      ALVGPNG GKST   
Sbjct: 4   LSGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAA 63

Query: 225 LLKGELTPNKGKVLLEKVNF-GLDME---SRVALVG 256
           LL+    P  GKVLL+       D     ++VA VG
Sbjct: 64  LLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVG 99

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 10/61 (16%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLN-------AVIWLDNYLQTWKKTLLVVS 62
           SGG R  V+LARAL  +P LL+LD  T+ LD             L    +   +T+L+++
Sbjct: 158 SGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRL---LYESPEWASRTVLLIT 214

Query: 63  H 63
            
Sbjct: 215 Q 215

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263

 Score = 51.4 bits (124), Expect = 1e-07
 Identities = 44/136 (32%), Positives = 57/136 (41%), Gaps = 26/136 (19%)

Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFL---NLL----KG-------ELTPNKGELRKSP 284
           L+ +N  +     V ++GP+G GKSTFL   NLL    +G        L      L K  
Sbjct: 40  LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV- 98

Query: 285 RLRIGKFDQHSGEHLFPDDTPCEYLM----KLFNLP----YEKSRRQLGMFGLPSYAHTI 336
           R  +G   Q    +LFP  T    +     K+   P      K+   L   GL   AH  
Sbjct: 99  REEVGMVFQRF--NLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAY 156

Query: 337 PIRDLSGGQKARVALA 352
           P   LSGGQ  RVA+A
Sbjct: 157 PDS-LSGGQAQRVAIA 171

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263

 Score = 42.6 bits (101), Expect = 8e-05
 Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 15/67 (22%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLD---LNAVIWLDNYLQTWKK------TLLV 60
           SGG   RV++ARAL +EP ++L DEPT+ LD   +  V      L   K+      T++V
Sbjct: 161 SGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEV------LSVMKQLANEGMTMVV 214

Query: 61  VSHDQSF 67
           V+H+  F
Sbjct: 215 VTHEMGF 221

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)

Query: 176 PPPVLG---LHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL 230
           P  + G     ++ F YP      +L+ +N  +     VALVG +G GKST + L++   
Sbjct: 381 PDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLY 440

Query: 231 TPNKGKVLLEKVN 243
            P  G V ++  +
Sbjct: 441 DPLDGMVSIDGQD 453

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 43/197 (21%), Positives = 74/197 (37%), Gaps = 37/197 (18%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLD-------LNAVIWLDNYLQTWKKTLLVVS 62
           SGG + R+++ARAL   P +LLLDE T+ LD         A   LD   +   +T +V++
Sbjct: 528 SGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAA---LDKARE--GRTTIVIA 582

Query: 63  HDQSFLNNICTDII-------------H--LDMKKLFYYKGNFTLFK--KMYVQKRKELT 105
           H  S + N   D+I             H  L  +K  Y+K    L        +      
Sbjct: 583 HRLSTVRN--ADVIAGFDGGVIVEQGNHDELMREKGIYFK----LVMTQTAGNEIELGNE 636

Query: 106 KEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIV 165
                 E    +M S+        R+ + K++     +  +    +   E +     + +
Sbjct: 637 ACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDEDVPPASFWRI 696

Query: 166 KFRFPNPPYLPPPVLGL 182
             +  N    P  V+G+
Sbjct: 697 -LKL-NSTEWPYFVVGI 711

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 9/97 (9%)

Query: 169  FPNPPYLPPPVLG---LHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFL 223
            +      P  + G      V F YP      +L+ ++  +     +ALVG +G GKST +
Sbjct: 1017 YSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVV 1076

Query: 224  NLLKGELTPNKGKVLLEKVNF-GLDME---SRVALVG 256
             LL+    P  G V L+      L+++   +++ +V 
Sbjct: 1077 QLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVS 1113

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 17/32 (53%), Positives = 24/32 (75%)

Query: 9    FSGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
             SGG + R+++ARAL  +P +LLLDE T+ LD
Sbjct: 1172 LSGGQKQRIAIARALVRQPHILLLDEATSALD 1203

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 43/165 (26%), Positives = 63/165 (38%), Gaps = 55/165 (33%)

Query: 234  KGKVLLEKVNF------------GLDME----SRVALVGPNGIGKSTFLNLL-------K 270
            +G V    V F            GL +E      +ALVG +G GKST + LL        
Sbjct: 1028 EGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMA 1087

Query: 271  GELTPNKGELR----KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGM 326
            G +  +  E++    +  R ++G   Q     LF D +  E      N+ Y  + R +  
Sbjct: 1088 GSVFLDGKEIKQLNVQWLRAQLGIVSQEP--ILF-DCSIAE------NIAYGDNSRVVSY 1138

Query: 327  --------------F--GLPS-YAHTIPIR--DLSGGQKARVALA 352
                          F   LP  Y   +  +   LSGGQK R+A+A
Sbjct: 1139 EEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIA 1183

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348

 Score = 51.4 bits (124), Expect = 1e-07
 Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 12/65 (18%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--------TLLVV 61
           SGG + RV+LARAL   P +LLLDEP + LD           +            T+L +
Sbjct: 129 SGGEQQRVALARALVTNPKILLLDEPLSALDPR----TQENAREMLSVLHKKNKLTVLHI 184

Query: 62  SHDQS 66
           +HDQ+
Sbjct: 185 THDQT 189

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348

 Score = 43.3 bits (103), Expect = 6e-05
 Identities = 35/140 (25%), Positives = 53/140 (37%), Gaps = 34/140 (24%)

Query: 235 GKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKGELR--------KSP 284
               L+ ++  L +ES     ++GP G GK+ FL L+ G   P+ G +          SP
Sbjct: 12  KNFSLDNLS--LKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP 69

Query: 285 RLR-IGKFDQHSGEHLFPDDTPCEYLMKLF-NLPY----------EKSRRQLGMFGLPSY 332
               I    Q+    LFP        M +  NL +          ++         +   
Sbjct: 70  EKHDIAFVYQNYS--LFPH-------MNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHL 120

Query: 333 AHTIPIRDLSGGQKARVALA 352
               P   LSGG++ RVALA
Sbjct: 121 LDRNP-LTLSGGEQQRVALA 139

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229

 Score = 49.9 bits (120), Expect = 3e-07
 Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 53/143 (37%)

Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH 298
           L+ +NF ++    +A+ G  G GK++ L ++ GEL P++G+++ S   RI    Q S   
Sbjct: 24  LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQFS--- 78

Query: 299 LFPDDTPCEYLMK-------LFNLPYEKSRRQLGMFGLPSYAHTI------------PIR 339
                    ++M        +F + Y++ R          Y   I              +
Sbjct: 79  ---------WIMPGTIKENIIFGVSYDEYR----------YRSVIKACQLEEDISKFAEK 119

Query: 340 D----------LSGGQKARVALA 352
           D          LSGGQ+AR++LA
Sbjct: 120 DNIVLGEGGITLSGGQRARISLA 142

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229

 Score = 47.9 bits (115), Expect = 1e-06
 Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 1/57 (1%)

Query: 182 LHDVTFGY-PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
           + +VT  +  GG  +L+ +NF ++    +A+ G  G GK++ L ++ GEL P++GK+
Sbjct: 9   MENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 65

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score = 51.0 bits (123), Expect = 3e-07
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 15/80 (18%)

Query: 151 DEPKELLEKPREYIVKFRFPNPPYLPPPVLG---LHDVTFGYPGGKV-LLEKVNFGLDME 206
           DE  ++                        G   +  V+F Y   +  +L+ +N  ++  
Sbjct: 319 DEDYDIKNGVG-----------AQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKG 367

Query: 207 SRVALVGPNGIGKSTFLNLL 226
             VA VG +G GKST +NL+
Sbjct: 368 ETVAFVGMSGGGKSTLINLI 387

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 15/56 (26%)

Query: 229 ELTPNKGKVLLEKVNFG-------------LDME--SRVALVGPNGIGKSTFLNLL 269
            +   +G++ ++ V+F              L +E    VA VG +G GKST +NL+
Sbjct: 332 PIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLI 387

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 4e-07
 Identities = 53/301 (17%), Positives = 95/301 (31%), Gaps = 67/301 (22%)

Query: 19  LARALFLEPTLLLLDEPTNHLDLNAVIW--LDNYLQTWKKTLLVVSHD------QSFLNN 70
           L + L   P  L  +  T +    ++I   + + L TW      V+ D      +S LN 
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD-NWKHVNCDKLTTIIESSLNV 365

Query: 71  ICTDIIHLDMKKLFYYKGNFTLFKK---------------MYVQKRKELTKE---YELQE 112
           +       + +K+F      ++F                 +       +  +   Y L E
Sbjct: 366 LEPA----EYRKMFD---RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418

Query: 113 KQIREMKSQGMS-----KEKAERQHS-HKALKEQARKRVQKDDDDEPKELLEKPREYIVK 166
           KQ +E      S     K K E +++ H+++ +        D DD     L++   Y   
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ---YFYS 475

Query: 167 FRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLD-MESRVALVGPNGIGKSTFLNL 225
                        +G H     +P    L   V      +E ++           + LN 
Sbjct: 476 H------------IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT 523

Query: 226 L------KGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE 279
           L      K  +  N  K     VN    +   +  +  N I  S + +LL+  L      
Sbjct: 524 LQQLKFYKPYICDNDPK-YERLVN---AILDFLPKIEENLI-CSKYTDLLRIALMAEDEA 578

Query: 280 L 280
           +
Sbjct: 579 I 579

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 4e-05
 Identities = 58/369 (15%), Positives = 108/369 (29%), Gaps = 101/369 (27%)

Query: 31  LLDEPTNHLDLNAVIWL-----DNYLQTWKKTLLVVSHDQSFL-NNICTDIIHLDMKKLF 84
           ++           + W      +  +Q + + +L    +  FL + I T+     M    
Sbjct: 54  IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL--RINYKFLMSPIKTEQRQPSMMTRM 111

Query: 85  Y-------YKGNFTLFKKMYVQKRKELTKEYELQE--KQIREMKS---QGM--------- 123
           Y       Y  N  +F K  V + +   K   L++   ++R  K+    G+         
Sbjct: 112 YIEQRDRLYNDN-QVFAKYNVSRLQPYLK---LRQALLELRPAKNVLIDGVLGSGKTWVA 167

Query: 124 ----SKEKAE-------------RQHSHKALKEQARK---------RVQKDDDDEPKELL 157
                  K +               +S + + E  +K           + D     K  +
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227

Query: 158 EKPREYIVKFRFPNPPYLPPPVLGLHDV-------TFGYPGGKVLLEKVNFGLDMESR-- 208
              +  + +    + PY    +L L +V        F     K+LL          +R  
Sbjct: 228 HSIQAELRRL-LKSKPY-ENCLLVLLNVQNAKAWNAFNL-SCKILLT---------TRFK 275

Query: 209 -VALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK-VNFGLDMESRVAL-VGP---NGIGK 262
            V             L+     LTP++ K LL K ++       R  L   P   + I +
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335

Query: 263 ST--FLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH--------LFPDDT--PCEYLM 310
           S    L         N  +L       +   +    E+        +FP     P   L 
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLE--PAEYRKMFDRLSVFPPSAHIPTILLS 393

Query: 311 KL-FNLPYE 318
            + F++   
Sbjct: 394 LIWFDVIKS 402

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262

 Score = 49.1 bits (118), Expect = 6e-07
 Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 35/155 (22%)

Query: 209 VALVGPNGIGKSTFL---NLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTF 265
           ++++G +G GKSTFL   N L+    P++G +++   N  L  +    L           
Sbjct: 35  ISIIGSSGSGKSTFLRCINFLE---KPSEGAIIVNGQNINLVRDKDGQLK---------- 81

Query: 266 LNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM----KLFNLP----Y 317
                     +K +LR   R R+    QH   +L+   T  E +M    ++  L      
Sbjct: 82  --------VADKNQLRLL-RTRLTMVFQHF--NLWSHMTVLENVMEAPIQVLGLSKHDAR 130

Query: 318 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
           E++ + L   G+   A       LSGGQ+ RV++A
Sbjct: 131 ERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIA 165

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262

 Score = 42.9 bits (102), Expect = 6e-05
 Identities = 20/31 (64%), Positives = 25/31 (80%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
           SGG + RVS+ARAL +EP +LL DEPT+ LD
Sbjct: 155 SGGQQQRVSIARALAMEPDVLLFDEPTSALD 185

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score = 49.1 bits (118), Expect = 6e-07
 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 184 DVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 226
           DV F YP       L+ +NF +   +  ALVG  G GKST   LL
Sbjct: 22  DVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLL 66

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score = 40.2 bits (95), Expect = 5e-04
 Identities = 14/58 (24%), Positives = 17/58 (29%), Gaps = 16/58 (27%)

Query: 228 GELTPNKGKVLLEKVNFGLDMES----------------RVALVGPNGIGKSTFLNLL 269
                    +    VNF    ++                  ALVG  G GKST   LL
Sbjct: 9   SHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLL 66

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 14/31 (45%), Positives = 22/31 (70%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
           SGG R R+++AR L  +P +++ DE T+ LD
Sbjct: 157 SGGERQRIAIARCLLKDPKIVIFDEATSSLD 187

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339

 Score = 49.3 bits (117), Expect = 8e-07
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 9/74 (12%)

Query: 7   KEFSGGWRIRVSLA------RALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK---T 57
              SGG RI + LA        L  E +LL+LDEPT +LD      L   ++ + K    
Sbjct: 247 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQ 306

Query: 58  LLVVSHDQSFLNNI 71
           +++VSHD+   +  
Sbjct: 307 VILVSHDEELKDAA 320

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290

 Score = 48.9 bits (117), Expect = 8e-07
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 7/95 (7%)

Query: 143 KRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFG 202
           + V    ++   EL EK ++        N              +     G  +L+ +NF 
Sbjct: 8   ENVTAFWEEGFGELFEKAKQ-------NNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFK 60

Query: 203 LDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
           ++    +A+ G  G GK++ L ++ GEL P++GK+
Sbjct: 61  IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 95

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 32/145 (22%), Positives = 55/145 (37%), Gaps = 58/145 (40%)

Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH 298
           L+ +NF ++    +A+ G  G GK++ L ++ GEL P++G+++            HSG  
Sbjct: 54  LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK------------HSGRI 101

Query: 299 LFPDDTPCEYLMKLFN---------LPYEKSRRQLGMFGLPSYAHTI------------P 337
            F           +           + Y++ R          Y   I             
Sbjct: 102 SFCSQNSW-----IMPGTIKENIIGVSYDEYR----------YRSVIKACQLEEDISKFA 146

Query: 338 IRD----------LSGGQKARVALA 352
            +D          LSGGQ+AR++LA
Sbjct: 147 EKDNIVLGEGGITLSGGQRARISLA 171

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 4/62 (6%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDL---NAVIWLDNYL-QTWKKTLLVVSH 63
           + SGG + RV++ARAL   P ++L D+PT  LD      ++ L   L +   KT++VV+H
Sbjct: 145 QLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204

Query: 64  DQ 65
           D 
Sbjct: 205 DI 206

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 51/193 (26%), Positives = 84/193 (43%), Gaps = 55/193 (28%)

Query: 179 VLGLHDVTFGYPGGKVL---LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL-TPNK 234
           ++ L +VT  Y  G+ +   L+ VN  +     V+++GP+G GKST LN++ G L  P +
Sbjct: 1   MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKPTE 59

Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIG----K 290
           G+V ++ +            +  +             ELT    ++R   R +IG    +
Sbjct: 60  GEVYIDNIK--------TNDLDDD-------------ELT----KIR---RDKIGFVFQQ 91

Query: 291 FDQHSGEHLFPDDT-------PCEYLMKLFNLPYEKSRR---QLGMFGLPS-YAHTIPIR 339
           F      +L P  T       P  +  +      E+ +R    L M  L   +A+  P  
Sbjct: 92  F------NLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-N 144

Query: 340 DLSGGQKARVALA 352
            LSGGQ+ RVA+A
Sbjct: 145 QLSGGQQQRVAIA 157

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240

 Score = 47.1 bits (113), Expect = 2e-06
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 177 PPVLGLHDVTFGYPGGKVL-LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 235
             VL +  +   Y  G +  ++ ++  +     V L+G NG GK+T L+ + G +   KG
Sbjct: 4   DIVLEVQSLHVYY--GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKG 61

Query: 236 KVLLE 240
           K++  
Sbjct: 62  KIIFN 66

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237

 Score = 46.8 bits (112), Expect = 3e-06
 Identities = 32/143 (22%), Positives = 47/143 (32%), Gaps = 53/143 (37%)

Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH 298
           L  + F +   + VA+VG  G GKS+ L+ L  E+   +G +       +    Q +   
Sbjct: 21  LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG--SVAYVPQQA--- 75

Query: 299 LFPDDTPCEYLMK-------LFNLPYEKSRRQLGMFGLPSYAHTI------------PIR 339
                    ++         LF    E+            Y   I            P  
Sbjct: 76  ---------WIQNDSLRENILFGCQLEEPY----------YRSVIQACALLPDLEILPSG 116

Query: 340 D----------LSGGQKARVALA 352
           D          LSGGQK RV+LA
Sbjct: 117 DRTEIGEKGVNLSGGQKQRVSLA 139

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237

 Score = 46.0 bits (110), Expect = 5e-06
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 182 LHDVTFGY-PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV 237
           + + TF +       L  + F +   + VA+VG  G GKS+ L+ L  E+   +G V
Sbjct: 6   VRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237

 Score = 40.6 bits (96), Expect = 4e-04
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 10/77 (12%)

Query: 10  SGGWRIRVSLARALFLEPTLLLLDEPTNHLD-------LNAVIWLDNYLQTWKKTLLVVS 62
           SGG + RVSLARA++    + L D+P + +D          VI     L+   KT ++V+
Sbjct: 129 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLK--NKTRILVT 186

Query: 63  HDQSFLNNICTDIIHLD 79
           H  S+L      II + 
Sbjct: 187 HSMSYLPQ-VDVIIVMS 202

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 45.1 bits (106), Expect = 7e-06
 Identities = 14/76 (18%), Positives = 35/76 (46%), Gaps = 9/76 (11%)

Query: 99  QKRKE---LTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKR------VQKDD 149
           +  +E   + K  E Q K+++E+ +     E+  R+ + K L+E  +++       + ++
Sbjct: 79  RLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINN 138

Query: 150 DDEPKELLEKPREYIV 165
               K   ++P   I+
Sbjct: 139 RIADKAFYQQPDADII 154

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 10/66 (15%)

Query: 7   KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDL-------NAVIWLDNYLQTWKKTLL 59
           +E SG  + RV+LARAL  +P+LLLLDEP ++LD          V  + + L     TLL
Sbjct: 139 RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGV---TLL 195

Query: 60  VVSHDQ 65
           VVSHD 
Sbjct: 196 VVSHDP 201

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 38/191 (19%), Positives = 68/191 (35%), Gaps = 64/191 (33%)

Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
           + +V+  +  GKV+    N  +++E+     ++GP+G GK+TF+ ++ G   P+ G++  
Sbjct: 6   VKNVSKVFKKGKVVALD-NVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYF 64

Query: 240 --EKVNFGLDMESRVALVGPN--GIG-----------KSTFLNL---LKGELTPNKGELR 281
               V       +   +V P    IG            + F N+   L            
Sbjct: 65  DDRLVA-----SNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLT---------NM 110

Query: 282 KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDL 341
           K  +  I K                            +      +  +    +  P R+L
Sbjct: 111 KMSKEEIRK----------------------------RVEEVAKILDIHHVLNHFP-REL 141

Query: 342 SGGQKARVALA 352
           SG Q+ RVALA
Sbjct: 142 SGAQQQRVALA 152

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 9/64 (14%)

Query: 10  SGGWRIRVSLA------RALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK---TLLV 60
           SGG RI + LA        L  E +LL+LDEPT +LD      L   ++ + K    +++
Sbjct: 59  SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVIL 118

Query: 61  VSHD 64
           VSHD
Sbjct: 119 VSHD 122

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 47/206 (22%), Positives = 77/206 (37%), Gaps = 48/206 (23%)

Query: 160 PREYIVKFRFPNPPYLPPPVLGLHDV--TFGYPGGKVL-LEKVNFGLDMESRVALVGPNG 216
              +       +       ++ L ++   F      +  L  V+  +       ++G +G
Sbjct: 5   HHHHHHHHSSGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASG 64

Query: 217 IGKSTF---LNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL 273
            GKST    +NLL+    P +G VL++                         L  L    
Sbjct: 65  AGKSTLIRCVNLLE---RPTEGSVLVDGQE----------------------LTTLSES- 98

Query: 274 TPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQ----LGM 326
                EL K+ R +IG   QH   +L    T        ++L N P ++ +R+    L +
Sbjct: 99  -----ELTKA-RRQIGMIFQHF--NLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSL 150

Query: 327 FGLPSYAHTIPIRDLSGGQKARVALA 352
            GL     + P  +LSGGQK RVA+A
Sbjct: 151 VGLGDKHDSYP-SNLSGGQKQRVAIA 175

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD 40
             SGG + RV++ARAL   P +LL D+ T+ LD
Sbjct: 163 NLSGGQKQRVAIARALASNPKVLLCDQATSALD 195

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 23/142 (16%), Positives = 47/142 (33%), Gaps = 30/142 (21%)

Query: 9   FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT------WKKTLLVVS 62
            S G +  + LAR++  +  +LLLDEP+ HLD          ++          T+++  
Sbjct: 156 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPV----TYQIIRRTLKQAFADCTVILCE 211

Query: 63  HDQSFLNNI--CTDIIHLDM---------KKLFYYKGNFTLFKKMYVQKRKELTKEYELQ 111
                +  +  C   + ++           +L++Y  +   F   +        K   L 
Sbjct: 212 AR---IEAMLECDQFLVIEENKVRQYDSILELYHYPAD--RFVAGF----IGSPKMNFLP 262

Query: 112 EKQIREMKSQGMSKEKAERQHS 133
            K       Q   +     +  
Sbjct: 263 VKVTATAIDQVQVELPMPNRQQ 284

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 4/80 (5%)

Query: 168 RFPNPPYLPPPVLG---LHDVTFGYPGGKVL-LEKVNFGLDMESRVALVGPNGIGKSTFL 223
              +     P V G     +V F Y       L  VNF +   S VA++G  G GKST +
Sbjct: 327 EEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLM 386

Query: 224 NLLKGELTPNKGKVLLEKVN 243
           NL+   + P +G+V +++++
Sbjct: 387 NLIPRLIDPERGRVEVDELD 406

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 14/68 (20%)

Query: 7   KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA---------VIWLDNYLQTWKKT 57
            + SGG + RV++ARAL  EP +LLLDEP ++LD  A         +  L   L     T
Sbjct: 132 WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD--ALLRLEVRAELKRLQKELGI---T 186

Query: 58  LLVVSHDQ 65
            + V+HDQ
Sbjct: 187 TVYVTHDQ 194

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371

 Score = 40.2 bits (94), Expect = 7e-04
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 9/79 (11%)

Query: 2   QEKSTKEFSGGWRIRVSLARALFL-------EPTLLLLDEPTNHLDLNAVIWLDNYLQTW 54
              +    SGG +I V+L+  L +           ++LDEPT +LD N    L    +  
Sbjct: 274 GVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKV 333

Query: 55  KKT--LLVVSHDQSFLNNI 71
           K    +++++H +   +  
Sbjct: 334 KSIPQMIIITHHRELEDVA 352

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372

 Score = 39.9 bits (94), Expect = 8e-04
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 14/68 (20%)

Query: 7   KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA---------VIWLDNYLQTWKKT 57
            + SGG R RV++ARA+ +EP +LL+DEP ++LD  A         +  L   L+    T
Sbjct: 140 AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD--AKLRVAMRAEIKKLQQKLKV---T 194

Query: 58  LLVVSHDQ 65
            + V+HDQ
Sbjct: 195 TIYVTHDQ 202

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359

 Score = 39.9 bits (94), Expect = 9e-04
 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 14/68 (20%)

Query: 7   KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA---------VIWLDNYLQTWKKT 57
            + SGG + RV+LARAL  +P +LL DEP ++LD  A         +  L   L     T
Sbjct: 132 TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLD--ANLRMIMRAEIKHLQQELGI---T 186

Query: 58  LLVVSHDQ 65
            + V+HDQ
Sbjct: 187 SVYVTHDQ 194

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	356
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	100.0
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	100.0
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	100.0
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	100.0
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	100.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	100.0
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	100.0
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	100.0
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	100.0
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	100.0
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	100.0
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	100.0
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.97
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.97
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.97
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.97
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.96
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.96
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.96
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.96
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.96
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.96
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.96
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.96
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.96
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.96
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.96
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.96
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.96
1g6h_A	257	High-affinity branched-chain amino acid transport	99.96
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.96
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.96
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.96
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.95
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.95
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.95
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.95
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.95
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.95
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.95
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.95
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.95
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.94
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.94
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.94
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.94
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.94
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.94
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.93
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.92
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.92
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.92
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.92
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.91
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.91
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.9
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.9
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.9
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.9
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.9
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.89
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.89
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.89
1g6h_A	257	High-affinity branched-chain amino acid transport	99.89
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.89
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.89
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.89
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.89
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.89
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.89
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.89
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.89
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.88
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.88
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.88
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.88
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.88
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.88
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.88
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.88
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.88
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.88
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.88
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.87
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.87
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.87
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.87
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.87
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.86
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.86
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.86
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	99.84
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.84
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.83
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.83
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.83
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.83
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.83
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.82
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.82
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.81
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.8
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.8
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.8
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.8
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.8
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.8
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.79
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.79
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.78
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.76
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.75
3kta_B	173	Chromosome segregation protein SMC; structural mai	99.74
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.74
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.74
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.72
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.69
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.68
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	99.64
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.63
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.62
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.6
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.57
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.57
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.56
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	99.56
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.55
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.54
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.54
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	99.51
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.48
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.47
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.45
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.44
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.4
1p9r_A	418	General secretion pathway protein E; bacterial typ	99.39
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.39
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.38
2og2_A	359	Putative signal recognition particle receptor; nuc	99.38
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.38
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.37
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.36
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.3
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.28
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.26
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.2
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	99.19
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.16
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.14
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.13
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.12
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.11
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	99.1
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	99.09
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.09
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.07
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.06
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.03
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	99.03
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.01
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.95
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.95
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	98.9
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	98.88
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	98.87
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	98.84
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.82
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.81
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.8
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.77
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	98.76
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	98.75
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	98.74
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	98.74
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.73
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.73
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	98.72
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	98.7
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.69
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	98.68
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	98.68
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	98.67
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.66
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.65
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.65
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	98.64
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.61
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	98.6
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.59
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	98.58
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	98.58
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	98.56
2og2_A	359	Putative signal recognition particle receptor; nuc	98.56
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.55
2ewv_A	372	Twitching motility protein PILT; pilus retraction	98.55
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.53
4a74_A	231	DNA repair and recombination protein RADA; hydrola	98.52
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	98.52
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	98.52
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.51
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	98.51
4a74_A	231	DNA repair and recombination protein RADA; hydrola	98.51
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.5
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.48
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.47
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.44
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.43
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.42
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.42
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	98.39
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	98.38
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	98.38
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	98.34
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	98.28
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.27
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.26
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.25
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.24
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.24
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.22
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.21
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.2
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	98.19
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.19
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.17
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.15
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.14
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.13
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.13
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.13
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	98.12
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	98.12
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.11
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.1
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	98.09
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	98.09
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	98.09
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.09
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.08
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	98.06
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.06
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.04
3ice_A	422	Transcription termination factor RHO; transcriptio	98.03
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	98.02
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	98.02
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.01
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.99
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	97.99
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	97.97
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.97
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	97.94
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.94
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.93
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	97.9
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	97.89
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.87
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	97.84
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.83
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.83
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	97.82
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.8
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.78
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.78
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.76
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.75
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.74
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.71
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.68
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.68
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.68
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.67
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	97.67
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	97.67
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.66
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.64
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.61
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	97.6
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.6
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.59
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.58
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.58
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.58
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	97.57
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.57
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.55
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.55
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.54
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.52
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	97.48
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.48
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.46
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.45
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.45
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.44
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.41
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	97.4
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.39
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.39
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.37
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.36
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.35
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.35
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	97.35
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.34
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.33
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.32
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.26
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.25
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.25
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.23
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.23
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.21
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.21
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.19
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.18
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	97.17
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.14
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.12
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.11
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.1
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.07
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.06
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.06
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.04
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	97.02
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.01
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.01
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.0
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.0
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.99
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.96
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	96.96
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	96.95
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	96.93
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	96.93
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.92
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.92
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.9
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	96.89
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	96.87
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.85
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	96.83
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	96.76
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.76
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.75
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.75
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.73
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	96.72
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.71
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	96.71
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.69
2wji_A	165	Ferrous iron transport protein B homolog; membrane	96.68
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.68
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	96.66
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.65
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.63
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.62
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	96.61
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.61
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.58
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.57
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	96.56
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.55
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	96.52
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.51
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	96.5
2r6a_A	454	DNAB helicase, replicative helicase; replication,	96.44
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.44
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	96.43
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	96.43
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.41
2r6a_A	454	DNAB helicase, replicative helicase; replication,	96.39
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.37
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	96.34
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.33
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	96.31
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.28
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.26
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.26
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.25
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.23
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.23
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.2
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	96.19
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.19
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	96.18
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.12
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.11
3kta_B	173	Chromosome segregation protein SMC; structural mai	96.11
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.09
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.09
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.06
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.04
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	96.04
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	96.02
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.01
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	95.99
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	95.97
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	95.93
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	95.93
2wji_A	165	Ferrous iron transport protein B homolog; membrane	95.92
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	95.91
1via_A	175	Shikimate kinase; structural genomics, transferase	95.88
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	95.87
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	95.86
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	95.85
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	95.84
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	95.84
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	95.83
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	95.76
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	95.76
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	95.72
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	95.67
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	95.64
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	95.64
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	95.63
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	95.61
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	95.61
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	95.58
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	95.57
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	95.56
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	95.53
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	95.49
2vli_A	183	Antibiotic resistance protein; transferase, tunica	95.49
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.47
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	95.47
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.46
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	95.42
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	95.41
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.41
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	95.4
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	95.38
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	95.36
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	95.36
2ged_A	193	SR-beta, signal recognition particle receptor beta	95.34
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	95.34
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	95.29
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	95.29
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	95.28
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.26
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	95.25
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	95.24
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	95.18
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	95.16
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	95.16
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	95.16
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	95.14
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	95.13
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	95.13
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	95.13
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	95.11
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	95.1
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	95.07
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	95.07
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	95.07
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	95.03
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	95.01
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	95.01
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	94.99
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	94.99
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	94.98
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	94.97
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	94.97
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	94.96
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	94.96
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	94.96
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	94.95
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	94.95
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	94.94
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	94.94
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	94.93
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	94.92
2z43_A	324	DNA repair and recombination protein RADA; archaea	94.92
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	94.92
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	94.91
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	94.91
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	94.9
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	94.88
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	94.87
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	94.87
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	94.87
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	94.85
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	94.85
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	94.84
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	94.84
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	94.84
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	94.83
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	94.82
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	94.8
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	94.79
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	94.79
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	94.77
3bos_A	242	Putative DNA replication factor; P-loop containing	94.76
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	94.74
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	94.72
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	94.7
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	94.7
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	94.69
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	94.69
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	94.66

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=100.00  E-value=1.8e-47  Score=399.55  Aligned_cols=191  Identities=39%  Similarity=0.658  Sum_probs=150.6

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEEeCCe
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMKK   82 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l~~g~   82 (356)
                      ++++.+||||||||++||++|+.+|+|||||||||+||+.++.+|.++|++.++|||+||||++++.++||+|++|++|+
T Consensus       543 ~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~  622 (986)
T 2iw3_A          543 AMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLK  622 (986)
T ss_dssp             HSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred             cCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCe
Confidence            67899999999999999999999999999999999999999999999999878899999999999999999999999999


Q ss_pred             EeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhhcCCcc
Q psy2684          83 LFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPRE  162 (356)
Q Consensus        83 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (356)
                      ++.|.|++++|......    .              .. ..                      .  ....... ...+..
T Consensus       623 iv~~~G~~~e~~~~~~~----~--------------~~-~~----------------------~--l~~~~~~-~~~p~~  658 (986)
T 2iw3_A          623 LRKYKGNFTEFVKKCPA----A--------------KA-YE----------------------E--LSNTDLE-FKFPEP  658 (986)
T ss_dssp             EEEEESCHHHHHHHCGG----G--------------GG-SS----------------------S--TTTCCCC-CCCCCC
T ss_pred             eecCCCCHHHHHhhhHH----H--------------HH-HH----------------------h--hhhhhhh-cccccc
Confidence            98788998776431000    0              00 00                      0  0000000 000000


Q ss_pred             eeeEEEecCCCCCCCCcEEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEee
Q psy2684         163 YIVKFRFPNPPYLPPPVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK  241 (356)
Q Consensus       163 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g  241 (356)
                      .    ........++++++++|+++.|++. +++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus       659 ~----~~~~~~~~~~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~  734 (986)
T 2iw3_A          659 G----YLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHE  734 (986)
T ss_dssp             C----CCTTCCSTTSEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECT
T ss_pred             c----cccccccCCCceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcC
Confidence            0    0000011235689999999999542 5799999999999999999999999999999999999999999999875

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=100.00  E-value=5e-47  Score=379.59  Aligned_cols=256  Identities=24%  Similarity=0.289  Sum_probs=186.5

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++++.+|||||||||+||+||+.+|+|||||||||+||+.++.++.++|+++   ++|||+||||++++..+||+|++|
T Consensus       152 ~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl  231 (538)
T 1yqt_A          152 LEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVV  231 (538)
T ss_dssp             TTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred             hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            47889999999999999999999999999999999999999999888888765   789999999999999999999999


Q ss_pred             eCCeE--eEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhh
Q psy2684          79 DMKKL--FYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKEL  156 (356)
Q Consensus        79 ~~g~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (356)
                      +++..  ..+...++.-.        .. .         ..+......                  ....  ...     
T Consensus       232 ~~~~~~~~~~~~~~~~~~--------~~-~---------~~~~~~~~~------------------~~~~--~~~-----  268 (538)
T 1yqt_A          232 YGEPGVYGIFSQPKGTRN--------GI-N---------EFLRGYLKD------------------ENVR--FRP-----  268 (538)
T ss_dssp             EEETTTEEEECCCEEHHH--------HH-H---------HHHHTEETT------------------TTEE--CSS-----
T ss_pred             cCcccccccccchhhHHH--------HH-H---------HHhhhccch------------------hhhc--ccc-----
Confidence            85421  11222222100        00 0         000000000                  0000  000     


Q ss_pred             hcCCcceeeEEEecCCC--CCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCC
Q psy2684         157 LEKPREYIVKFRFPNPP--YLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK  234 (356)
Q Consensus       157 ~~~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~  234 (356)
                        .+    ..+.++.+.  ..++++++++|+++.| ++ ..|+++||+|++||+++|+||||||||||+++|+|+++|++
T Consensus       269 --~~----~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~  340 (538)
T 1yqt_A          269 --YE----IKFTKTGERVEIERETLVTYPRLVKDY-GS-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTE  340 (538)
T ss_dssp             --SC----CCCCCSSGGGSSCCCEEEEECCEEEEE-TT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSB
T ss_pred             --cc----cccccCCcccccCCCeEEEEeeEEEEE-CC-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence              00    000000100  1245689999999999 44 47899999999999999999999999999999999999999


Q ss_pred             CceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh--
Q psy2684         235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL--  312 (356)
Q Consensus       235 G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~--  312 (356)
                      |+|.+.                                             .++||++|++.  .++..|+.+++...  
T Consensus       341 G~i~~~---------------------------------------------~~i~~v~Q~~~--~~~~~tv~~~~~~~~~  373 (538)
T 1yqt_A          341 GKIEWD---------------------------------------------LTVAYKPQYIK--ADYEGTVYELLSKIDA  373 (538)
T ss_dssp             CCCCCC---------------------------------------------CCEEEECSSCC--CCCSSBHHHHHHHHHH
T ss_pred             eEEEEC---------------------------------------------ceEEEEecCCc--CCCCCcHHHHHHhhhc
Confidence            988541                                             25899999874  34677887776432  


Q ss_pred             cC-CCHHHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         313 FN-LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       313 ~~-~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .. .....++++|+.+++.+... +++.+|||||||||+||++++
T Consensus       374 ~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSGGe~qrv~lAraL~  417 (538)
T 1yqt_A          374 SKLNSNFYKTELLKPLGIIDLYD-REVNELSGGELQRVAIAATLL  417 (538)
T ss_dssp             HHHTCHHHHHHTTTTTTCGGGTT-SBGGGCCHHHHHHHHHHHHHT
T ss_pred             cCCCHHHHHHHHHHHcCChhhhc-CChhhCCHHHHHHHHHHHHHH
Confidence            11 23455778999999976554 578999999999999999974

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=100.00  E-value=5.1e-46  Score=376.14  Aligned_cols=256  Identities=25%  Similarity=0.338  Sum_probs=186.4

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++++.+|||||||||+||+||+.+|+||||||||++||+.++.++.++|+++   +.|||+||||++++..+||+|++|
T Consensus       222 ~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl  301 (607)
T 3bk7_A          222 LDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVV  301 (607)
T ss_dssp             GGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred             hCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEE
Confidence            47889999999999999999999999999999999999999998888888765   789999999999999999999999


Q ss_pred             eCCeEe--EecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhh
Q psy2684          79 DMKKLF--YYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKEL  156 (356)
Q Consensus        79 ~~g~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (356)
                      +++...  .+...++..        ... ..         .+..  .                     .. ..  .. ..
T Consensus       302 ~~~~~~~g~~~~~~~~~--------~~i-~~---------~~~~--~---------------------~~-~~--~~-~~  336 (607)
T 3bk7_A          302 YGEPGVYGIFSKPKGTR--------NGI-NE---------FLQG--Y---------------------LK-DE--NV-RF  336 (607)
T ss_dssp             ESCTTTEEEECCCEEHH--------HHH-HH---------HHHT--E---------------------ET-TT--TE-EC
T ss_pred             CCCccccceeccchhHH--------HHH-HH---------HHhh--c---------------------ch-hh--hh-hc
Confidence            864321  111222110        000 00         0000  0                     00 00  00 00


Q ss_pred             hcCCcceeeEEEecCCC--CCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCC
Q psy2684         157 LEKPREYIVKFRFPNPP--YLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK  234 (356)
Q Consensus       157 ~~~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~  234 (356)
                          +.....+....+.  ...+++++++|+++.| ++ ..|+++||+|.+||+++|+||||||||||+++|+|+++|++
T Consensus       337 ----~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~  410 (607)
T 3bk7_A          337 ----RPYEIRFTKLSERVDVERETLVEYPRLVKDY-GS-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTE  410 (607)
T ss_dssp             ----CSSCCCCCCSTTSCCCCCCEEEEECCEEEEC-SS-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSB
T ss_pred             ----cccccccccCCCcccccCceEEEEeceEEEe-cc-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCc
Confidence                0000000111111  1235689999999999 44 47899999999999999999999999999999999999999


Q ss_pred             CceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-c
Q psy2684         235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-F  313 (356)
Q Consensus       235 G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-~  313 (356)
                      |+|.+.                                             .++||++|++.  .+...|+.+++... .
T Consensus       411 G~I~~~---------------------------------------------~~i~~v~Q~~~--~~~~~tv~e~~~~~~~  443 (607)
T 3bk7_A          411 GKVEWD---------------------------------------------LTVAYKPQYIK--AEYEGTVYELLSKIDS  443 (607)
T ss_dssp             SCCCCC---------------------------------------------CCEEEECSSCC--CCCSSBHHHHHHHHHH
T ss_pred             eEEEEe---------------------------------------------eEEEEEecCcc--CCCCCcHHHHHHhhhc
Confidence            988541                                             25899999874  44677888876432 1


Q ss_pred             -C-CCHHHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         314 -N-LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       314 -~-~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                       . .....+.++|+.+|+.+..+ +++.+|||||||||+||++|+
T Consensus       444 ~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSGGe~QRv~iAraL~  487 (607)
T 3bk7_A          444 SKLNSNFYKTELLKPLGIIDLYD-RNVEDLSGGELQRVAIAATLL  487 (607)
T ss_dssp             HHHHCHHHHHHTHHHHTCTTTTT-SBGGGCCHHHHHHHHHHHHHT
T ss_pred             cCCCHHHHHHHHHHHcCCchHhc-CChhhCCHHHHHHHHHHHHHH
Confidence             1 12345678899999987655 578999999999999999974

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=100.00  E-value=1.3e-45  Score=368.60  Aligned_cols=262  Identities=20%  Similarity=0.192  Sum_probs=186.3

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEe
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLD   79 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~   79 (356)
                      .++++.+|||||||||+||+||+.+|+||||||||++||+.++.++.++|+++  +.|||+||||++++..+||+|++|+
T Consensus       132 ~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~  211 (538)
T 3ozx_A          132 WNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIY  211 (538)
T ss_dssp             TTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEE
T ss_pred             hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEec
Confidence            47889999999999999999999999999999999999999999999988876  6899999999999999999999998


Q ss_pred             CCeEe--EecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhhh
Q psy2684          80 MKKLF--YYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELL  157 (356)
Q Consensus        80 ~g~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (356)
                      +|...  .+...+..-        ... ..         .+.... .                 .....  .......  
T Consensus       212 ~~~~~~g~~~~~~~~~--------~~~-~~---------~~~g~~-~-----------------~~~~~--~r~~~~~--  251 (538)
T 3ozx_A          212 GESSVYGRVSKSYAAR--------VGI-NN---------FLKGYL-P-----------------AENMK--IRPDEIK--  251 (538)
T ss_dssp             EETTTEEEECCCEEHH--------HHH-HH---------HHHTEE-T-----------------TTTEE--CSSSCCC--
T ss_pred             CCcccccccchhhhHH--------HHH-HH---------HHhhhc-h-----------------hhhhh--ccchhhh--
Confidence            65322  111222100        000 00         000000 0                 00000  0000000  


Q ss_pred             cCCcceeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCce
Q psy2684         158 EKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV  237 (356)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i  237 (356)
                       .+....   ..........++++++++++.| ++ ..|..+||+|++||+++|+||||||||||+++|+|+++|++|+|
T Consensus       252 -~~~~~~---~~~~~~~~~~~~l~~~~l~~~~-~~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i  325 (538)
T 3ozx_A          252 -FMLKEV---SDLDLSKDLKTKMKWTKIIKKL-GD-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSV  325 (538)
T ss_dssp             -CSCC-------------CCEEEEECCEEEEE-TT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCE
T ss_pred             -cccccc---ccccccccccceEEEcceEEEE-CC-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence             000000   0000001235689999999999 44 56888899999999999999999999999999999999999999


Q ss_pred             eEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC---
Q psy2684         238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN---  314 (356)
Q Consensus       238 ~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~---  314 (356)
                      .+++                                            ..++|++|+..  .....|+.+++.....   
T Consensus       326 ~~~~--------------------------------------------~~i~~~~q~~~--~~~~~tv~~~l~~~~~~~~  359 (538)
T 3ozx_A          326 TPEK--------------------------------------------QILSYKPQRIF--PNYDGTVQQYLENASKDAL  359 (538)
T ss_dssp             ESSC--------------------------------------------CCEEEECSSCC--CCCSSBHHHHHHHHCSSTT
T ss_pred             EECC--------------------------------------------eeeEeechhcc--cccCCCHHHHHHHhhhhcc
Confidence            7532                                            24789999763  3346788888764321   


Q ss_pred             -CCHHHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         315 -LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       315 -~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                       .....+.++++.+++....+ +++.+|||||||||+||++|+
T Consensus       360 ~~~~~~~~~~l~~~~l~~~~~-~~~~~LSGGq~QRv~iAraL~  401 (538)
T 3ozx_A          360 STSSWFFEEVTKRLNLHRLLE-SNVNDLSGGELQKLYIAATLA  401 (538)
T ss_dssp             CTTSHHHHHTTTTTTGGGCTT-SBGGGCCHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHcCCHHHhc-CChhhCCHHHHHHHHHHHHHH
Confidence             12345678899999987665 478999999999999999973

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-42  Score=349.22  Aligned_cols=256  Identities=20%  Similarity=0.267  Sum_probs=179.9

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++++.+||||||||++||+||+.+|++|||||||++||+.++.++.++++++   +.|||+||||++++..+||+|++|
T Consensus       215 ~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl  294 (608)
T 3j16_B          215 LKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCII  294 (608)
T ss_dssp             GGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred             hCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            47889999999999999999999999999999999999999999999888765   579999999999999999999999


Q ss_pred             eCCeEeE--ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCCCCchhh
Q psy2684          79 DMKKLFY--YKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKEL  156 (356)
Q Consensus        79 ~~g~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (356)
                      +++....  +..+++. .        ...          ..+..                      .....+.      .
T Consensus       295 ~~~~~~~~~~~~~~~~-~--------~~~----------~~~~~----------------------~~~~~~~------~  327 (608)
T 3j16_B          295 YGVPSVYGVVTLPASV-R--------EGI----------NIFLD----------------------GHIPAEN------L  327 (608)
T ss_dssp             ESCTTTEEEECCCEEH-H--------HHH----------HHHHH----------------------TEETTTT------E
T ss_pred             eCCccccceecCchhH-H--------HHH----------HHhhc----------------------cccchhh------h
Confidence            8764321  0111110 0        000          00000                      0000000      0


Q ss_pred             hcCCcceeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCC-----CeEEEEcCCCCCcchhhhhhccccc
Q psy2684         157 LEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDME-----SRVALVGPNGIGKSTFLNLLKGELT  231 (356)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~g-----e~~~i~G~nGsGKSTll~~l~gl~~  231 (356)
                      .  .+.....  +..........+...++++.|++...+++++||++.+|     |+++|+||||||||||+++|+|+++
T Consensus       328 ~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~  403 (608)
T 3j16_B          328 R--FRTEALQ--FRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK  403 (608)
T ss_dssp             E--CSSSCCC--CCCSSSSCCCCCCSSSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC
T ss_pred             c--ccccccc--ccccccccceeeeccceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC
Confidence            0  0000000  00000011112233678888854456899999999999     8899999999999999999999999


Q ss_pred             cCCCceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHH
Q psy2684         232 PNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK  311 (356)
Q Consensus       232 p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~  311 (356)
                      |++|+..                                             ....++|++|+..  .....|+.+++..
T Consensus       404 p~~G~~~---------------------------------------------~~~~i~~~~q~~~--~~~~~tv~e~~~~  436 (608)
T 3j16_B          404 PDEGQDI---------------------------------------------PKLNVSMKPQKIA--PKFPGTVRQLFFK  436 (608)
T ss_dssp             CSBCCCC---------------------------------------------CSCCEEEECSSCC--CCCCSBHHHHHHH
T ss_pred             CCCCcCc---------------------------------------------cCCcEEEeccccc--ccCCccHHHHHHH
Confidence            9988520                                             0135899999864  2334578887654


Q ss_pred             hc-C--CCHHHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         312 LF-N--LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       312 ~~-~--~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .. .  .....+.++++.+++.+..+. ++.+|||||||||+||++|+
T Consensus       437 ~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~LSGGqkQRv~iAraL~  483 (608)
T 3j16_B          437 KIRGQFLNPQFQTDVVKPLRIDDIIDQ-EVQHLSGGELQRVAIVLALG  483 (608)
T ss_dssp             HCSSTTTSHHHHHHTHHHHTSTTTSSS-BSSSCCHHHHHHHHHHHHTT
T ss_pred             HhhcccccHHHHHHHHHHcCChhhhcC-ChhhCCHHHHHHHHHHHHHH
Confidence            32 1  234556788999999876654 78999999999999999974

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=100.00  E-value=3.9e-41  Score=366.59  Aligned_cols=144  Identities=27%  Similarity=0.353  Sum_probs=109.3

Q ss_pred             CcEEEecceeeeCCC--ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684         178 PVLGLHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV  255 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~--~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv  255 (356)
                      ..++++|+++.|++.  .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++....       
T Consensus      1029 g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~------- 1101 (1284)
T 3g5u_A         1029 GNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLN------- 1101 (1284)
T ss_dssp             CCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSC-------
T ss_pred             CcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCC-------
Confidence            358999999999642  36999999999999999999999999999999999999999999999998864110       


Q ss_pred             cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCCHHHHHHHHhhcCCCCc
Q psy2684         256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLPYEKSRRQLGMFGLPSY  332 (356)
Q Consensus       256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~~~~~~~~L~~~~l~~~  332 (356)
                                              . ...+.+++|++|++.  ++ +.|+.|++....   ..+.+++++.++..++...
T Consensus      1102 ------------------------~-~~~r~~i~~v~Q~~~--l~-~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~ 1153 (1284)
T 3g5u_A         1102 ------------------------V-QWLRAQLGIVSQEPI--LF-DCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQF 1153 (1284)
T ss_dssp             ------------------------H-HHHTTSCEEEESSCC--CC-SSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHH
T ss_pred             ------------------------H-HHHHhceEEECCCCc--cc-cccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHH
Confidence                                    0 011457999999983  44 569999985422   2455666666655554322


Q ss_pred             ccc----------CCCCCCChHHHHHHHHHHHcC
Q psy2684         333 AHT----------IPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       333 ~~~----------~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ...          ....+|||||||||+|||+++
T Consensus      1154 i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~ 1187 (1284)
T 3g5u_A         1154 IDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALV 1187 (1284)
T ss_dssp             HSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHH
T ss_pred             HHhCccccccccCCCCCccCHHHHHHHHHHHHHH
Confidence            111          124689999999999999974

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=100.00  E-value=1.6e-39  Score=334.37  Aligned_cols=163  Identities=23%  Similarity=0.222  Sum_probs=117.6

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPT--LLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDII   76 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~--~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~   76 (356)
                      .++++.+|||||||||+||+||+.+|+  ||||||||++||+.++.++.++|+++   +.|||+||||++++. .||+|+
T Consensus       196 ~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~ii  274 (670)
T 3ux8_A          196 LSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYLI  274 (670)
T ss_dssp             TTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHH-HCSEEE
T ss_pred             hcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-hCCEEE
Confidence            468899999999999999999999998  99999999999999999988887754   689999999999876 599999


Q ss_pred             EE------eCCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCC
Q psy2684          77 HL------DMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDD  150 (356)
Q Consensus        77 ~l------~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (356)
                      +|      ++|+++. .|+++......                         .....      .         .+.... 
T Consensus       275 ~l~~g~~~~~G~i~~-~g~~~~~~~~~-------------------------~~~~~------~---------~~~~~~-  312 (670)
T 3ux8_A          275 DIGPGAGIHGGEVVA-AGTPEEVMNDP-------------------------NSLTG------Q---------YLSGKK-  312 (670)
T ss_dssp             EECSSSGGGCCSEEE-EECHHHHHTCT-------------------------TCHHH------H---------HHTTSS-
T ss_pred             EecccccccCCEEEE-ecCHHHHhcCc-------------------------hhHHH------H---------Hhcccc-
Confidence            99      7888875 46654432100                         00000      0         000000 


Q ss_pred             CCchhhhcCCcceeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhc
Q psy2684         151 DEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK  227 (356)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~  227 (356)
                      .     ...+         ..........+.+.+.+      ..+|+++||+|++||+++|+||||||||||++++.
T Consensus       313 ~-----~~~~---------~~~~~~~~~~~~~~~~~------~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          313 F-----IPIP---------AERRRPDGRWLEVVGAR------EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             C-----CCCC---------SSCCCCCSCEEEEEEEC------STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred             c-----cccc---------cccccccccceeecCcc------ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence            0     0000         00001122344544432      35899999999999999999999999999998753

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=7.5e-38  Score=326.75  Aligned_cols=159  Identities=25%  Similarity=0.340  Sum_probs=118.0

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPT--LLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDII   76 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~--~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~   76 (356)
                      .++++.+|||||+|||+||++|+.+|+  +|||||||++||+..+.+|.++|+++   +.|||+||||++++.. ||+|+
T Consensus       458 l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~-aD~ii  536 (916)
T 3pih_A          458 LSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRN-ADHII  536 (916)
T ss_dssp             TTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHT-CSEEE
T ss_pred             ccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEEE
Confidence            478999999999999999999999887  99999999999999999999998876   5799999999999865 99999


Q ss_pred             EE------eCCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCC
Q psy2684          77 HL------DMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDD  150 (356)
Q Consensus        77 ~l------~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (356)
                      +|      ++|+++ +.|+++++......   ....                           ..+      .  . ...
T Consensus       537 ~lgpgag~~~G~iv-~~G~~~e~~~~~~~---~~~~---------------------------~~l------~--~-~~~  576 (916)
T 3pih_A          537 DIGPGGGTNGGRVV-FQGTVDELLKNPDS---SLTG---------------------------EYL------S--G-KRK  576 (916)
T ss_dssp             EEESSSGGGCSEEE-EEECHHHHHHSCTT---CHHH---------------------------HHH------H--S-SSC
T ss_pred             EEcCCcccCCCEEE-EeechhhhhcCchh---cchh---------------------------hhh------h--c-ccc
Confidence            99      778876 57888765421000   0000                           000      0  0 000


Q ss_pred             CCchhhhcCCcceeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhh
Q psy2684         151 DEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL  223 (356)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll  223 (356)
                            .          ..+.........+++++++      ...|+++||+|++|++++|+|+||||||||+
T Consensus       577 ------~----------~~~~~~~~~~~~l~v~~~~------~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl  627 (916)
T 3pih_A          577 ------I----------TVNKTRRLPYASLKIKGVR------HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLV  627 (916)
T ss_dssp             ------C----------CCCSSCCCCSSEEEEEEEC------STTCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred             ------c----------ccccccccccceEEEeeec------cccccccceEEcCCcEEEEEccCCCChhhhH
Confidence                  0          0000011112346666554      2369999999999999999999999999997

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=100.00  E-value=1.6e-37  Score=321.90  Aligned_cols=165  Identities=25%  Similarity=0.311  Sum_probs=125.8

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHH---hcCcEEEEEecChhHHhhhcCEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPT--LLLLDEPTNHLDLNAVIWLDNYLQ---TWKKTLLVVSHDQSFLNNICTDII   76 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~--~llLDEPt~~LD~~~~~~l~~~l~---~~~~tvi~vsHd~~~l~~~~~~i~   76 (356)
                      .++++.+|||||+|||+||++|+.+|+  +|||||||++||+..+++|.++++   +.+.|||+||||++++. .||+|+
T Consensus       373 l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~-~aD~ii  451 (842)
T 2vf7_A          373 LDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIR-RADWLV  451 (842)
T ss_dssp             TTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHT-TCSEEE
T ss_pred             ccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHH-hCCEEE
Confidence            578999999999999999999999995  999999999999999999888665   45789999999999885 699999


Q ss_pred             EE------eCCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCC
Q psy2684          77 HL------DMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDD  150 (356)
Q Consensus        77 ~l------~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (356)
                      +|      ++|+++ +.|+++++.+....    ...         +.+.                        .   ...
T Consensus       452 ~lgpgaG~~~G~iv-~~g~~~~~~~~~~~----~~~---------~~l~------------------------~---~~~  490 (842)
T 2vf7_A          452 DVGPEAGEKGGEIL-YSGPPEGLKHVPES----QTG---------QYLF------------------------A---DRH  490 (842)
T ss_dssp             EECSSSGGGCCSEE-EEECGGGGGGCTTC----HHH---------HHHH------------------------T---CCC
T ss_pred             EeCCCcccCCCEEE-EecCHHHHHhchHH----HHH---------HHhh------------------------h---ccc
Confidence            99      566665 57888776431100    000         0000                        0   000


Q ss_pred             CCchhhhcCCcceeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhh-hccc
Q psy2684         151 DEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNL-LKGE  229 (356)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~-l~gl  229 (356)
                       .+      +          .....+.++|+++|+++      ..|+++||+|++|++++|+|+||||||||+++ |+|+
T Consensus       491 -~~------~----------~~~~~~~~~L~v~~l~~------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~  547 (842)
T 2vf7_A          491 -TE------P----------HTPREPAGWLELNGVTR------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDA  547 (842)
T ss_dssp             -CC------C----------CCCCCCSCEEEEEEEEE------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHH
T ss_pred             -cc------c----------cccCCCCceEEEEeeee------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHH
Confidence             00      0          00112346799999975      16999999999999999999999999999997 7766


Q ss_pred             cc
Q psy2684         230 LT  231 (356)
Q Consensus       230 ~~  231 (356)
                      +.
T Consensus       548 l~  549 (842)
T 2vf7_A          548 LA  549 (842)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=100.00  E-value=1.9e-37  Score=321.81  Aligned_cols=163  Identities=24%  Similarity=0.204  Sum_probs=122.8

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEecChhHHhhhcCEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEP--TLLLLDEPTNHLDLNAVIWLDNYLQT---WKKTLLVVSHDQSFLNNICTDII   76 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p--~~llLDEPt~~LD~~~~~~l~~~l~~---~~~tvi~vsHd~~~l~~~~~~i~   76 (356)
                      .+|++.+|||||+||++||++|+++|  ++|||||||++||+..+++|.++|++   .+.|||+||||++++. .||+|+
T Consensus       498 ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrIi  576 (972)
T 2r6f_A          498 LSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYLI  576 (972)
T ss_dssp             SSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHH-SCSEEE
T ss_pred             cCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEE
Confidence            58999999999999999999999985  99999999999999999999887765   4789999999999986 699999


Q ss_pred             EE------eCCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccCC
Q psy2684          77 HL------DMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDD  150 (356)
Q Consensus        77 ~l------~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (356)
                      +|      ++|+++ +.|+++++.....    .+..                           ..+      ..  ....
T Consensus       577 ~LgpgaG~~gG~iv-~~G~~~e~~~~~~----slt~---------------------------~~l------~g--~~~~  616 (972)
T 2r6f_A          577 DIGPGAGIHGGEVV-AAGTPEEVMNDPN----SLTG---------------------------QYL------SG--KKFI  616 (972)
T ss_dssp             EECSSSGGGCCSEE-EEECTTTTTTCTT----CTTH---------------------------HHH------HT--SSCC
T ss_pred             EeCCCccCCCCEEE-EecCHHHHHhhhH----HHHH---------------------------HHh------cC--Cccc
Confidence            99      567776 5788876543100    0000                           000      00  0000


Q ss_pred             CCchhhhcCCcceeeEEEecCCCCCCCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhc
Q psy2684         151 DEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK  227 (356)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~  227 (356)
                             ..+.         .......+++++++++.      ..|+++||+|+.|++++|+|+||||||||++++.
T Consensus       617 -------~~~~---------~~~~~~~~~L~v~~l~~------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll  671 (972)
T 2r6f_A          617 -------PIPA---------ERRRPDGRWLEVVGARE------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL  671 (972)
T ss_dssp             -------CCCS---------SCCCCCSCEEEEEEECS------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred             -------cCcc---------ccccccceEEEEecCcc------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence                   0000         00111236799999863      2699999999999999999999999999999864

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=100.00  E-value=8.7e-36  Score=325.35  Aligned_cols=143  Identities=24%  Similarity=0.375  Sum_probs=112.6

Q ss_pred             cEEEecceeeeCC--CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684         179 VLGLHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG  256 (356)
Q Consensus       179 ~l~~~~l~~~~~~--~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG  256 (356)
                      -++++||+++|++  +.++|+|+||+|++||++||+|+||||||||+++|.|++.|++|+|.++|+|+..-.        
T Consensus      1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~-------- 1147 (1321)
T 4f4c_A         1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLN-------- 1147 (1321)
T ss_dssp             CEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBC--------
T ss_pred             eEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCC--------
Confidence            4899999999964  246999999999999999999999999999999999999999999999999874110        


Q ss_pred             CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCHHHHHHHHhhcCCCCcc
Q psy2684         257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPYEKSRRQLGMFGLPSYA  333 (356)
Q Consensus       257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~~~~~~~L~~~~l~~~~  333 (356)
                                              ....+.+|+|++|+|.  +| +-|+.+|+...   .+.+.+++++.++..++.+..
T Consensus      1148 ------------------------~~~lR~~i~~V~Qdp~--LF-~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I 1200 (1321)
T 4f4c_A         1148 ------------------------PEHTRSQIAIVSQEPT--LF-DCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFI 1200 (1321)
T ss_dssp             ------------------------HHHHHTTEEEECSSCC--CC-SEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHH
T ss_pred             ------------------------HHHHHhheEEECCCCE--ee-CccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHH
Confidence                                    0112457999999983  55 45899998532   345678888888877763221


Q ss_pred             c------cCC----CCCCChHHHHHHHHHHHcC
Q psy2684         334 H------TIP----IRDLSGGQKARVALAELTL  356 (356)
Q Consensus       334 ~------~~~----~~~LSGGqkqRvalA~~~l  356 (356)
                      .      +.+    -..||||||||+||||+++
T Consensus      1201 ~~Lp~GldT~vge~G~~LSgGQrQriaiARAll 1233 (1321)
T 4f4c_A         1201 AELPEGFETRVGDRGTQLSGGQKQRIAIARALV 1233 (1321)
T ss_dssp             HTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHH
T ss_pred             HcCcCCCCCEecCCCcccCHHHHHHHHHHHHHH
Confidence            1      112    2579999999999999974

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.97  E-value=5e-31  Score=249.55  Aligned_cols=144  Identities=24%  Similarity=0.318  Sum_probs=119.1

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      +++++|+++.| ++..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....          
T Consensus         4 ~l~i~~ls~~y-~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~----------   72 (359)
T 3fvq_A            4 ALHIGHLSKSF-QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKN----------   72 (359)
T ss_dssp             CEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSS----------
T ss_pred             EEEEEeEEEEE-CCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccc----------
Confidence            68999999999 6778999999999999999999999999999999999999999999999998763100          


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCC----HHHHHHHHhhcCCCC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLP----YEKSRRQLGMFGLPS  331 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~----~~~~~~~L~~~~l~~  331 (356)
                                         .. ....+++|||+||++  .+++.+|+.+++....   ...    .+++.++|+.+|+.+
T Consensus        73 -------------------~~-~~~~~r~ig~vfQ~~--~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~  130 (359)
T 3fvq_A           73 -------------------TN-LPVRERRLGYLVQEG--VLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISE  130 (359)
T ss_dssp             -------------------CB-CCGGGSCCEEECTTC--CCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGG
T ss_pred             -------------------cc-cchhhCCEEEEeCCC--cCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCch
Confidence                               00 001135799999997  5899999999986532   222    245778999999988


Q ss_pred             ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         332 YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       332 ~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ..++ ++.+|||||||||+|||+|+
T Consensus       131 ~~~r-~~~~LSGGq~QRValArAL~  154 (359)
T 3fvq_A          131 LAGR-YPHELSGGQQQRAALARALA  154 (359)
T ss_dssp             GTTS-CGGGSCHHHHHHHHHHHHHT
T ss_pred             HhcC-ChhhCCHHHHHHHHHHHHHH
Confidence            7765 67999999999999999974

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.97  E-value=3.5e-31  Score=243.18  Aligned_cols=148  Identities=26%  Similarity=0.421  Sum_probs=117.8

Q ss_pred             CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684         177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG  256 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG  256 (356)
                      .++++++|+++.|+++..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...         
T Consensus         5 ~~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~---------   75 (275)
T 3gfo_A            5 DYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYS---------   75 (275)
T ss_dssp             CEEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCS---------
T ss_pred             CcEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcc---------
Confidence            35799999999995455699999999999999999999999999999999999999999999998876210         


Q ss_pred             CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcCC
Q psy2684         257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGL  329 (356)
Q Consensus       257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~l  329 (356)
                           +..                ....+.++||+||++...++ ..|+.+++...   .+.+.    +.+.++|+.+|+
T Consensus        76 -----~~~----------------~~~~~~~ig~v~Q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L  133 (275)
T 3gfo_A           76 -----RKG----------------IMKLRESIGIVFQDPDNQLF-SASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGI  133 (275)
T ss_dssp             -----HHH----------------HHHHHHSEEEECSSGGGTCC-SSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTC
T ss_pred             -----ccc----------------HHHHhCcEEEEEcCcccccc-cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence                 000                00012469999999854455 68999987542   23333    346788999999


Q ss_pred             CCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         330 PSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       330 ~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .....+ ++.+|||||||||+||++++
T Consensus       134 ~~~~~~-~~~~LSgGqkQRv~iAraL~  159 (275)
T 3gfo_A          134 EHLKDK-PTHCLSFGQKKRVAIAGVLV  159 (275)
T ss_dssp             GGGTTS-BGGGSCHHHHHHHHHHHHHT
T ss_pred             chhhcC-CcccCCHHHHHHHHHHHHHH
Confidence            876654 77999999999999999974

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.97  E-value=4.5e-31  Score=237.56  Aligned_cols=148  Identities=30%  Similarity=0.348  Sum_probs=115.6

Q ss_pred             cEEEecceeeeCCC---ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684         179 VLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV  255 (356)
Q Consensus       179 ~l~~~~l~~~~~~~---~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv  255 (356)
                      +++++|+++.|+++   ..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....       
T Consensus         1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~-------   73 (235)
T 3tif_A            1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLD-------   73 (235)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCC-------
T ss_pred             CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCC-------
Confidence            47899999999532   35899999999999999999999999999999999999999999999988763110       


Q ss_pred             cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc------CCCH----HHHHHHHh
Q psy2684         256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF------NLPY----EKSRRQLG  325 (356)
Q Consensus       256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~------~~~~----~~~~~~L~  325 (356)
                            ..               ......+.++||++|++  .+++.+|+.+++....      ....    +.+.++++
T Consensus        74 ------~~---------------~~~~~~~~~i~~v~Q~~--~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~  130 (235)
T 3tif_A           74 ------DD---------------ELTKIRRDKIGFVFQQF--NLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLK  130 (235)
T ss_dssp             ------HH---------------HHHHHHHHHEEEECTTC--CCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHH
T ss_pred             ------HH---------------HHHHHhhccEEEEecCC--ccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHH
Confidence                  00               00000123599999997  4788899999885421      2222    34667899


Q ss_pred             hcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         326 MFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       326 ~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .+++.+...++++.+|||||||||+||++++
T Consensus       131 ~~~l~~~~~~~~~~~LSgGq~QRv~iAral~  161 (235)
T 3tif_A          131 MAELEERFANHKPNQLSGGQQQRVAIARALA  161 (235)
T ss_dssp             HTTCCGGGTTCCGGGSCHHHHHHHHHHHHHT
T ss_pred             HCCCChhhhhCChhhCCHHHHHHHHHHHHHH
Confidence            9999875434578999999999999999974

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.97  E-value=5.7e-31  Score=249.28  Aligned_cols=150  Identities=27%  Similarity=0.329  Sum_probs=119.0

Q ss_pred             CCCCcEEEecceeeeCCC---ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCe
Q psy2684         175 LPPPVLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESR  251 (356)
Q Consensus       175 ~~~~~l~~~~l~~~~~~~---~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~  251 (356)
                      ..+++++++|+++.|+++   ..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....  
T Consensus        20 ~~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~--   97 (366)
T 3tui_C           20 DDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSE--   97 (366)
T ss_dssp             ---CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCH--
T ss_pred             CCCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCH--
Confidence            345789999999999532   358999999999999999999999999999999999999999999999988641100  


Q ss_pred             eeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHH
Q psy2684         252 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQL  324 (356)
Q Consensus       252 ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L  324 (356)
                                                ... ...+.+|||+||++  .+++.+|+.+++...   .+.+.    +.+.++|
T Consensus        98 --------------------------~~~-~~~r~~Ig~v~Q~~--~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL  148 (366)
T 3tui_C           98 --------------------------SEL-TKARRQIGMIFQHF--NLLSSRTVFGNVALPLELDNTPKDEVKRRVTELL  148 (366)
T ss_dssp             --------------------------HHH-HHHHTTEEEECSSC--CCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred             --------------------------HHH-HHHhCcEEEEeCCC--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence                                      000 00124699999997  488899999988643   33333    3467889


Q ss_pred             hhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         325 GMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       325 ~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +.+|+.+..+. ++.+|||||||||+|||+|+
T Consensus       149 ~~vgL~~~~~~-~~~~LSGGqkQRVaIArAL~  179 (366)
T 3tui_C          149 SLVGLGDKHDS-YPSNLSGGQKQRVAIARALA  179 (366)
T ss_dssp             HHHTCGGGTTC-CTTTSCHHHHHHHHHHHHTT
T ss_pred             HHcCCchHhcC-ChhhCCHHHHHHHHHHHHHh
Confidence            99999877655 67999999999999999985

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.96  E-value=2.5e-30  Score=246.36  Aligned_cols=140  Identities=24%  Similarity=0.369  Sum_probs=118.1

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      +++++|+++.| ++..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...           
T Consensus         3 ~l~~~~l~~~y-g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~-----------   70 (381)
T 3rlf_A            3 SVQLQNVTKAW-GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDT-----------   70 (381)
T ss_dssp             CEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTC-----------
T ss_pred             EEEEEeEEEEE-CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCC-----------
Confidence            58999999999 677899999999999999999999999999999999999999999999998876310           


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcCCCC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPS  331 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~l~~  331 (356)
                                     .+        ..++|||+||++  .+++.+|+.|++...   .+.+.    +.+.++|+.+++..
T Consensus        71 ---------------~~--------~~r~ig~VfQ~~--~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~  125 (381)
T 3rlf_A           71 ---------------PP--------AERGVGMVFQSY--ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH  125 (381)
T ss_dssp             ---------------CG--------GGSCEEEECTTC--CCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGG
T ss_pred             ---------------CH--------HHCCEEEEecCC--cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch
Confidence                           00        124699999997  589999999998542   33443    35678899999988


Q ss_pred             ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         332 YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       332 ~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ..++ ++.+|||||||||+|||+|+
T Consensus       126 ~~~r-~p~~LSGGqrQRVaiArAL~  149 (381)
T 3rlf_A          126 LLDR-KPKALSGGQRQRVAIGRTLV  149 (381)
T ss_dssp             GTTC-CGGGSCHHHHHHHHHHHHHH
T ss_pred             hhcC-ChhHCCHHHHHHHHHHHHHH
Confidence            7765 67999999999999999973

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.96  E-value=2.3e-30  Score=231.25  Aligned_cols=147  Identities=27%  Similarity=0.347  Sum_probs=116.7

Q ss_pred             CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      ++++++|+++.| +++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....         
T Consensus         3 ~~l~~~~l~~~y-~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~---------   72 (224)
T 2pcj_A            3 EILRAENIKKVI-RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTN---------   72 (224)
T ss_dssp             EEEEEEEEEEEE-TTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSC---------
T ss_pred             cEEEEEeEEEEE-CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCC---------
Confidence            378999999999 5677999999999999999999999999999999999999999999999987653100         


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCCC
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLP  330 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l~  330 (356)
                                         ........+.++||++|++  .+++..|+.|++...   .+..    .+.+.++++.+|+.
T Consensus        73 -------------------~~~~~~~~~~~i~~v~q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~  131 (224)
T 2pcj_A           73 -------------------EKELSLLRNRKLGFVFQFH--YLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLG  131 (224)
T ss_dssp             -------------------HHHHHHHHHHHEEEECSSC--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT
T ss_pred             -------------------HHHHHHHHhCcEEEEecCc--ccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCc
Confidence                               0000000014699999986  477889999987542   2322    23467889999998


Q ss_pred             CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         331 SYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       331 ~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +..+. ++.+|||||||||+||++++
T Consensus       132 ~~~~~-~~~~LSgGq~qrv~laral~  156 (224)
T 2pcj_A          132 DKLSR-KPYELSGGEQQRVAIARALA  156 (224)
T ss_dssp             TCTTC-CGGGSCHHHHHHHHHHHHTT
T ss_pred             hhhhC-ChhhCCHHHHHHHHHHHHHH
Confidence            76654 67999999999999999974

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.96  E-value=4.8e-30  Score=234.19  Aligned_cols=145  Identities=28%  Similarity=0.418  Sum_probs=117.0

Q ss_pred             CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      ++++++|+++.| +++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... .        
T Consensus        23 ~~l~i~~l~~~y-~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~-~--------   92 (263)
T 2olj_A           23 QMIDVHQLKKSF-GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAK-D--------   92 (263)
T ss_dssp             CSEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSST-T--------
T ss_pred             heEEEEeEEEEE-CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCc-c--------
Confidence            479999999999 567799999999999999999999999999999999999999999999998765200 0        


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh----cCCCH----HHHHHHHhhcCC
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLPY----EKSRRQLGMFGL  329 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~----~~~~~----~~~~~~L~~~~l  329 (356)
                                          ... ...+.++||++|++  .+++.+|+.|++...    .+.+.    +.+.++++.+|+
T Consensus        93 --------------------~~~-~~~~~~i~~v~Q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L  149 (263)
T 2olj_A           93 --------------------TNL-NKVREEVGMVFQRF--NLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGL  149 (263)
T ss_dssp             --------------------CCH-HHHHHHEEEECSSC--CCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTC
T ss_pred             --------------------ccH-HHHhCcEEEEeCCC--cCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence                                000 00124699999986  478889999987542    23332    346788999999


Q ss_pred             CCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         330 PSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       330 ~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .+..+. ++.+|||||||||+||++++
T Consensus       150 ~~~~~~-~~~~LSgGqkQRv~lAraL~  175 (263)
T 2olj_A          150 KDKAHA-YPDSLSGGQAQRVAIARALA  175 (263)
T ss_dssp             GGGTTS-CGGGSCHHHHHHHHHHHHHT
T ss_pred             chHhcC-ChhhCCHHHHHHHHHHHHHH
Confidence            876654 77999999999999999975

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.96  E-value=2.7e-30  Score=244.59  Aligned_cols=144  Identities=31%  Similarity=0.391  Sum_probs=119.4

Q ss_pred             CCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684         176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV  255 (356)
Q Consensus       176 ~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv  255 (356)
                      +.++++++|+++.|+++..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...        
T Consensus        11 ~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~--------   82 (355)
T 1z47_A           11 GSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDL--------   82 (355)
T ss_dssp             CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTC--------
T ss_pred             CCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcC--------
Confidence            456899999999994345799999999999999999999999999999999999999999999998775310        


Q ss_pred             cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcC
Q psy2684         256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFG  328 (356)
Q Consensus       256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~  328 (356)
                                        .        ..++++||+||++  .+++.+|+.|++...   .+.+.    +++.++|+.+|
T Consensus        83 ------------------~--------~~~r~ig~v~Q~~--~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~g  134 (355)
T 1z47_A           83 ------------------P--------PQKRNVGLVFQNY--ALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMR  134 (355)
T ss_dssp             ------------------C--------GGGSSEEEECGGG--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTT
T ss_pred             ------------------C--------hhhCcEEEEecCc--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence                              0        0134699999987  488999999998542   23332    35678999999


Q ss_pred             CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         329 LPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       329 l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +.+..++ ++.+|||||||||+|||+|+
T Consensus       135 L~~~~~r-~~~~LSGGq~QRvalArAL~  161 (355)
T 1z47_A          135 LESYANR-FPHELSGGQQQRVALARALA  161 (355)
T ss_dssp             CGGGTTS-CGGGSCHHHHHHHHHHHHHT
T ss_pred             ChhHhcC-CcccCCHHHHHHHHHHHHHH
Confidence            9887665 67999999999999999975

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.96  E-value=5.6e-30  Score=242.93  Aligned_cols=140  Identities=25%  Similarity=0.340  Sum_probs=117.7

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      +++++|+++.| ++..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...           
T Consensus         3 ~l~~~~l~~~y-~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~-----------   70 (359)
T 2yyz_A            3 SIRVVNLKKYF-GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDI-----------   70 (359)
T ss_dssp             CEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS-----------
T ss_pred             EEEEEEEEEEE-CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCC-----------
Confidence            58999999999 567799999999999999999999999999999999999999999999998775310           


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC---CC----HHHHHHHHhhcCCCC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN---LP----YEKSRRQLGMFGLPS  331 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~---~~----~~~~~~~L~~~~l~~  331 (356)
                                     .+        .++++||+||++  .+++.+|+.+++.....   .+    .+++.++|+.+++.+
T Consensus        71 ---------------~~--------~~r~ig~v~Q~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~  125 (359)
T 2yyz_A           71 ---------------PP--------KYREVGMVFQNY--ALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDN  125 (359)
T ss_dssp             ---------------CG--------GGTTEEEECSSC--CCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGG
T ss_pred             ---------------Ch--------hhCcEEEEecCc--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch
Confidence                           00        124699999987  48899999999875322   22    245778999999988


Q ss_pred             ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         332 YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       332 ~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ..++ ++.+|||||||||+|||+++
T Consensus       126 ~~~r-~~~~LSgGq~QRvalArAL~  149 (359)
T 2yyz_A          126 LLDR-KPTQLSGGQQQRVALARALV  149 (359)
T ss_dssp             GTTS-CGGGSCHHHHHHHHHHHHHT
T ss_pred             HhcC-ChhhCCHHHHHHHHHHHHHH
Confidence            7665 67999999999999999974

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.96  E-value=4.3e-30  Score=235.09  Aligned_cols=144  Identities=26%  Similarity=0.287  Sum_probs=117.9

Q ss_pred             CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684         177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG  256 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG  256 (356)
                      .++++++|+++.| +++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....        
T Consensus         9 ~~~l~~~~l~~~~-~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~--------   79 (266)
T 4g1u_C            9 VALLEASHLHYHV-QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQ--------   79 (266)
T ss_dssp             CCEEEEEEEEEEE-TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSC--------
T ss_pred             cceEEEEeEEEEe-CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCC--------
Confidence            3589999999999 6778999999999999999999999999999999999999999999999988763110        


Q ss_pred             CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC-----CCHHHHHHHHhhcCCCC
Q psy2684         257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN-----LPYEKSRRQLGMFGLPS  331 (356)
Q Consensus       257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~-----~~~~~~~~~L~~~~l~~  331 (356)
                                          .    ...+..++|++|++.  ++...|+.|++.....     ...+.+.++++.+++.+
T Consensus        80 --------------------~----~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~  133 (266)
T 4g1u_C           80 --------------------P----KALARTRAVMRQYSE--LAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLA  133 (266)
T ss_dssp             --------------------H----HHHHHHEEEECSCCC--CCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCST
T ss_pred             --------------------H----HHHhheEEEEecCCc--cCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChh
Confidence                                0    001235899999874  5567899999865321     12356788999999988


Q ss_pred             ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         332 YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       332 ~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ..++ ++.+|||||||||+||++++
T Consensus       134 ~~~~-~~~~LSgGq~QRv~iAraL~  157 (266)
T 4g1u_C          134 LAQR-DYRVLSGGEQQRVQLARVLA  157 (266)
T ss_dssp             TTTS-BGGGCCHHHHHHHHHHHHHH
T ss_pred             HhcC-CcccCCHHHHHHHHHHHHHh
Confidence            7654 67999999999999999974

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.96  E-value=1e-29  Score=225.10  Aligned_cols=136  Identities=24%  Similarity=0.365  Sum_probs=115.2

Q ss_pred             CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      .+|+++|+++.| ++ .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.            
T Consensus         9 ~~l~~~~ls~~y-~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~------------   74 (214)
T 1sgw_A            9 SKLEIRDLSVGY-DK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT------------   74 (214)
T ss_dssp             CEEEEEEEEEES-SS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG------------
T ss_pred             ceEEEEEEEEEe-CC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh------------
Confidence            579999999999 45 8999999999999999999999999999999999999999999999876541            


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cC--CCHHHHHHHHhhcCCCCc
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FN--LPYEKSRRQLGMFGLPSY  332 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~--~~~~~~~~~L~~~~l~~~  332 (356)
                                               ..+..++|++|++.  +++..|+.+++...   .+  ...+.+.++++.+|+...
T Consensus        75 -------------------------~~~~~i~~v~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~  127 (214)
T 1sgw_A           75 -------------------------KVKGKIFFLPEEII--VPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL  127 (214)
T ss_dssp             -------------------------GGGGGEEEECSSCC--CCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT
T ss_pred             -------------------------hhcCcEEEEeCCCc--CCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC
Confidence                                     01346999999873  67888999987532   12  234567889999999876


Q ss_pred             cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         333 AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       333 ~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                        .+++.+|||||||||+||++++
T Consensus       128 --~~~~~~LSgGqkqrv~laraL~  149 (214)
T 1sgw_A          128 --KKKLGELSQGTIRRVQLASTLL  149 (214)
T ss_dssp             --TSBGGGSCHHHHHHHHHHHHTT
T ss_pred             --CCChhhCCHHHHHHHHHHHHHH
Confidence              4578999999999999999975

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.96  E-value=5.7e-30  Score=233.96  Aligned_cols=156  Identities=26%  Similarity=0.356  Sum_probs=116.9

Q ss_pred             CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      ++++++|+++.| ++..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....        .
T Consensus         5 ~~l~i~~l~~~y-~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~--------~   75 (262)
T 1b0u_A            5 NKLHVIDLHKRY-GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVR--------D   75 (262)
T ss_dssp             CCEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEE--------C
T ss_pred             ceEEEeeEEEEE-CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccc--------c
Confidence            479999999999 5677999999999999999999999999999999999999999999999987652000        0


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh----cCCCH----HHHHHHHhhcCC
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLPY----EKSRRQLGMFGL  329 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~----~~~~~----~~~~~~L~~~~l  329 (356)
                      +..-+          ........ ...+.++||++|++  .+++.+|+.+++...    .+.+.    +.+.++|+.+|+
T Consensus        76 ~~~~~----------~~~~~~~~-~~~~~~i~~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L  142 (262)
T 1b0u_A           76 KDGQL----------KVADKNQL-RLLRTRLTMVFQHF--NLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGI  142 (262)
T ss_dssp             TTSSE----------EESCHHHH-HHHHHHEEEECSSC--CCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC
T ss_pred             ccccc----------cccChhhH-HHHhcceEEEecCc--ccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence            00000          00000000 00124699999986  478889999988542    23332    346788999999


Q ss_pred             CCc-cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         330 PSY-AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       330 ~~~-~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .+. ..+ ++.+|||||||||+||++++
T Consensus       143 ~~~~~~~-~~~~LSgGq~qRv~lAraL~  169 (262)
T 1b0u_A          143 DERAQGK-YPVHLSGGQQQRVSIARALA  169 (262)
T ss_dssp             CHHHHTS-CGGGSCHHHHHHHHHHHHHH
T ss_pred             CchhhcC-CcccCCHHHHHHHHHHHHHh
Confidence            876 554 67999999999999999973

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.96  E-value=7.7e-30  Score=242.24  Aligned_cols=140  Identities=26%  Similarity=0.385  Sum_probs=117.4

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      +++++|+++.| ++..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...           
T Consensus         3 ~l~~~~l~~~y-~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~-----------   70 (362)
T 2it1_A            3 EIKLENIVKKF-GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTEL-----------   70 (362)
T ss_dssp             CEEEEEEEEES-SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS-----------
T ss_pred             EEEEEeEEEEE-CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcC-----------
Confidence            58999999999 567799999999999999999999999999999999999999999999998775310           


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcCCCC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPS  331 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~l~~  331 (356)
                                     .+        .++++||+||++  .+++.+|+.+++...   .+.+.    +++.++++.+++.+
T Consensus        71 ---------------~~--------~~r~ig~v~Q~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~  125 (362)
T 2it1_A           71 ---------------PP--------KDRNVGLVFQNW--ALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDK  125 (362)
T ss_dssp             ---------------CG--------GGTTEEEECTTC--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTT
T ss_pred             ---------------CH--------hHCcEEEEecCc--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch
Confidence                           00        124699999987  488999999998542   23332    34678899999988


Q ss_pred             ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         332 YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       332 ~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ..++ ++.+|||||||||+|||+|+
T Consensus       126 ~~~r-~~~~LSGGq~QRvalArAL~  149 (362)
T 2it1_A          126 LLNR-YPWQLSGGQQQRVAIARALV  149 (362)
T ss_dssp             CTTC-CGGGSCHHHHHHHHHHHHHT
T ss_pred             HhhC-ChhhCCHHHHHHHHHHHHHH
Confidence            7765 67999999999999999974

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.96  E-value=6.1e-30  Score=242.65  Aligned_cols=145  Identities=22%  Similarity=0.348  Sum_probs=117.9

Q ss_pred             cEEEecceeeeCCCcc--ccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684         179 VLGLHDVTFGYPGGKV--LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG  256 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~--~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG  256 (356)
                      +++++|+++.| ++..  +|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....        
T Consensus         3 ~l~i~~l~~~y-~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~--------   73 (353)
T 1oxx_K            3 RIIVKNVSKVF-KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNG--------   73 (353)
T ss_dssp             CEEEEEEEEEE-GGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETT--------
T ss_pred             EEEEEeEEEEE-CCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccc--------
Confidence            58999999999 5567  999999999999999999999999999999999999999999999987753100        


Q ss_pred             CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCCH----HHHHHHHhhcCC
Q psy2684         257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLPY----EKSRRQLGMFGL  329 (356)
Q Consensus       257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~~----~~~~~~L~~~~l  329 (356)
                                           .......++++||+||++  .+++.+|+.+++....   +.+.    +.+.++|+.+|+
T Consensus        74 ---------------------~~~~~~~~r~ig~v~Q~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L  130 (353)
T 1oxx_K           74 ---------------------KLIVPPEDRKIGMVFQTW--ALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDI  130 (353)
T ss_dssp             ---------------------EESSCGGGSCEEEEETTS--CCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTC
T ss_pred             ---------------------cccCChhhCCEEEEeCCC--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence                                 000001135799999987  4889999999986532   2232    356789999999


Q ss_pred             CCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         330 PSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       330 ~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .+..++ ++.+|||||||||+|||+|+
T Consensus       131 ~~~~~~-~~~~LSGGq~QRvalAraL~  156 (353)
T 1oxx_K          131 HHVLNH-FPRELSGAQQQRVALARALV  156 (353)
T ss_dssp             GGGTTS-CGGGSCHHHHHHHHHHHHHT
T ss_pred             chHhcC-ChhhCCHHHHHHHHHHHHHH
Confidence            887665 67999999999999999974

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.96  E-value=9.6e-30  Score=231.42  Aligned_cols=143  Identities=21%  Similarity=0.302  Sum_probs=116.8

Q ss_pred             CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684         177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG  256 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG  256 (356)
                      -++++++|+++.| +++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...         
T Consensus        13 ~~~l~i~~l~~~y-~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~---------   82 (256)
T 1vpl_A           13 MGAVVVKDLRKRI-GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE---------   82 (256)
T ss_dssp             -CCEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC---------
T ss_pred             CCeEEEEEEEEEE-CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcc---------
Confidence            3579999999999 567899999999999999999999999999999999999999999999998765210         


Q ss_pred             CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcCC
Q psy2684         257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGL  329 (356)
Q Consensus       257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~l  329 (356)
                                              ....+.++||++|++  .+++..|+.|++...   .+...    +.+.++++.+|+
T Consensus        83 ------------------------~~~~~~~i~~v~q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL  136 (256)
T 1vpl_A           83 ------------------------PHEVRKLISYLPEEA--GAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGL  136 (256)
T ss_dssp             ------------------------HHHHHTTEEEECTTC--CCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
T ss_pred             ------------------------HHHHhhcEEEEcCCC--CCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC
Confidence                                    000124699999987  367888999987542   23332    346788999999


Q ss_pred             CCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         330 PSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       330 ~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .+...+ ++.+|||||||||+||++++
T Consensus       137 ~~~~~~-~~~~LSgGq~qRv~lAraL~  162 (256)
T 1vpl_A          137 GEKIKD-RVSTYSKGMVRKLLIARALM  162 (256)
T ss_dssp             GGGGGS-BGGGCCHHHHHHHHHHHHHT
T ss_pred             chHhcC-ChhhCCHHHHHHHHHHHHHH
Confidence            876654 77999999999999999974

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.96  E-value=9.8e-30  Score=242.37  Aligned_cols=140  Identities=24%  Similarity=0.377  Sum_probs=113.0

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      +++++|+++.| ++..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...           
T Consensus        11 ~l~~~~l~~~y-~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~-----------   78 (372)
T 1v43_A           11 EVKLENLTKRF-GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYL-----------   78 (372)
T ss_dssp             CEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS-----------
T ss_pred             eEEEEEEEEEE-CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCC-----------
Confidence            58999999999 567799999999999999999999999999999999999999999999998775310           


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---CCCH----HHHHHHHhhcCCCC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLPY----EKSRRQLGMFGLPS  331 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---~~~~----~~~~~~L~~~~l~~  331 (356)
                                     .+        .++++||+||++  .+++.+|+.+++....   +.+.    +++.++|+.+++.+
T Consensus        79 ---------------~~--------~~r~ig~v~Q~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~  133 (372)
T 1v43_A           79 ---------------PP--------KDRNISMVFQSY--AVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEE  133 (372)
T ss_dssp             ---------------CG--------GGGTEEEEEC--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGG
T ss_pred             ---------------Ch--------hhCcEEEEecCc--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh
Confidence                           00        124699999986  4889999999986532   2332    34678899999988


Q ss_pred             ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         332 YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       332 ~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ..++ ++.+|||||||||+|||+|+
T Consensus       134 ~~~r-~~~~LSGGq~QRvalArAL~  157 (372)
T 1v43_A          134 LLNR-YPAQLSGGQRQRVAVARAIV  157 (372)
T ss_dssp             GTTS-CTTTCCSSCHHHHHHHHHHT
T ss_pred             HhcC-ChhhCCHHHHHHHHHHHHHh
Confidence            7665 67999999999999999974

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.96  E-value=5.9e-30  Score=231.01  Aligned_cols=145  Identities=22%  Similarity=0.318  Sum_probs=115.5

Q ss_pred             CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684         177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG  256 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG  256 (356)
                      .++++++|+++.| +++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....        
T Consensus         4 ~~~l~~~~l~~~y-~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--------   74 (240)
T 1ji0_A            4 DIVLEVQSLHVYY-GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKP--------   74 (240)
T ss_dssp             SEEEEEEEEEEEE-TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCC--------
T ss_pred             CceEEEEeEEEEE-CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC--------
Confidence            3579999999999 5677999999999999999999999999999999999999999999999987653100        


Q ss_pred             CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc--CCC----HHHHHHHHhhcC-C
Q psy2684         257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF--NLP----YEKSRRQLGMFG-L  329 (356)
Q Consensus       257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~--~~~----~~~~~~~L~~~~-l  329 (356)
                                          ....   .+.++||++|++  .+++..|+.|++....  ...    .+.+.++++.++ +
T Consensus        75 --------------------~~~~---~~~~i~~v~q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l  129 (240)
T 1ji0_A           75 --------------------AHVI---NRMGIALVPEGR--RIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRL  129 (240)
T ss_dssp             --------------------HHHH---HHTTEEEECSSC--CCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHH
T ss_pred             --------------------HHHH---HhCCEEEEecCC--ccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccH
Confidence                                0000   123599999986  4778889999986532  111    234567888884 8


Q ss_pred             CCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         330 PSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       330 ~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .+...+ ++.+|||||||||+||++++
T Consensus       130 ~~~~~~-~~~~LSgGq~qrv~lAraL~  155 (240)
T 1ji0_A          130 KERLKQ-LGGTLSGGEQQMLAIGRALM  155 (240)
T ss_dssp             HTTTTS-BSSSSCHHHHHHHHHHHHHT
T ss_pred             hhHhcC-ChhhCCHHHHHHHHHHHHHH
Confidence            766654 67999999999999999975

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.96  E-value=3.9e-30  Score=234.51  Aligned_cols=144  Identities=23%  Similarity=0.293  Sum_probs=116.0

Q ss_pred             CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      ++++++|+++.| +++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....         
T Consensus         6 ~~l~i~~l~~~y-~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~---------   75 (257)
T 1g6h_A            6 EILRTENIVKYF-GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKE---------   75 (257)
T ss_dssp             EEEEEEEEEEEE-TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCC---------
T ss_pred             cEEEEeeeEEEE-CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC---------
Confidence            479999999999 5677999999999999999999999999999999999999999999999987652100         


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-----C-----------CC----H
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-----N-----------LP----Y  317 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-----~-----------~~----~  317 (356)
                                            .....+..+||++|++  .+++..|+.|++....     +           ..    .
T Consensus        76 ----------------------~~~~~~~~i~~v~q~~--~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (257)
T 1g6h_A           76 ----------------------PAELYHYGIVRTFQTP--QPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMV  131 (257)
T ss_dssp             ----------------------HHHHHHHTEEECCCCC--GGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHH
T ss_pred             ----------------------HHHHHhCCEEEEccCC--ccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHH
Confidence                                  0000123599999987  4677889999986431     1           11    1


Q ss_pred             HHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         318 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       318 ~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ..+.++++.+|+.+...+ ++.+|||||||||+||++++
T Consensus       132 ~~~~~~l~~~~l~~~~~~-~~~~LSgGqkQrv~iAraL~  169 (257)
T 1g6h_A          132 EKAFKILEFLKLSHLYDR-KAGELSGGQMKLVEIGRALM  169 (257)
T ss_dssp             HHHHHHHHHTTCGGGTTS-BGGGSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCchhhCC-CchhCCHHHHHHHHHHHHHH
Confidence            346788999999876654 77999999999999999973

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.96  E-value=1.1e-29  Score=242.47  Aligned_cols=146  Identities=24%  Similarity=0.352  Sum_probs=117.6

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      +++++|+++.| ++..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....         
T Consensus         3 ~l~~~~l~~~y-~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~---------   72 (372)
T 1g29_1            3 GVRLVDVWKVF-GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEK---------   72 (372)
T ss_dssp             EEEEEEEEEEE-TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGG---------
T ss_pred             EEEEEeEEEEE-CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccc---------
Confidence            58999999999 56779999999999999999999999999999999999999999999999877531000         


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcCCCC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPS  331 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~l~~  331 (356)
                                         +......++++||+||++  .+++.+|+.+++...   .+.+.    +.+.++|+.+++.+
T Consensus        73 -------------------~~~~~~~~r~ig~v~Q~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~  131 (372)
T 1g29_1           73 -------------------GIFVPPKDRDIAMVFQSY--ALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTE  131 (372)
T ss_dssp             -------------------TEECCGGGSSEEEECSCC--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGG
T ss_pred             -------------------cccCCHhHCCEEEEeCCC--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch
Confidence                               000001134699999986  488999999998542   23332    34678899999988


Q ss_pred             ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         332 YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       332 ~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ..++ ++.+|||||||||+|||+|+
T Consensus       132 ~~~r-~~~~LSGGq~QRvalArAL~  155 (372)
T 1g29_1          132 LLNR-KPRELSGGQRQRVALGRAIV  155 (372)
T ss_dssp             GTTC-CGGGSCHHHHHHHHHHHHHH
T ss_pred             HhcC-CcccCCHHHHHHHHHHHHHh
Confidence            7665 67999999999999999973

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.96  E-value=1.6e-29  Score=239.03  Aligned_cols=139  Identities=21%  Similarity=0.311  Sum_probs=116.4

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      |++++|+++.| ++. +++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...           
T Consensus         1 ml~~~~l~~~y-~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~-----------   67 (348)
T 3d31_A            1 MIEIESLSRKW-KNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDL-----------   67 (348)
T ss_dssp             CEEEEEEEEEC-SSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTS-----------
T ss_pred             CEEEEEEEEEE-CCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCC-----------
Confidence            47899999999 556 99999999999999999999999999999999999999999999998775310           


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC-CHHHHHHHHhhcCCCCccc
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-PYEKSRRQLGMFGLPSYAH  334 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~-~~~~~~~~L~~~~l~~~~~  334 (356)
                                     .        ..++++||+||++  .+++.+|+.|++...   .+. ..+++.++|+.+++.+..+
T Consensus        68 ---------------~--------~~~r~ig~v~Q~~--~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~  122 (348)
T 3d31_A           68 ---------------S--------PEKHDIAFVYQNY--SLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLD  122 (348)
T ss_dssp             ---------------C--------HHHHTCEEECTTC--CCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTT
T ss_pred             ---------------c--------hhhCcEEEEecCc--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhc
Confidence                           0        0124699999987  488999999998542   222 2266788999999988776


Q ss_pred             cCCCCCCChHHHHHHHHHHHcC
Q psy2684         335 TIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       335 ~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      + ++.+|||||||||+|||+|+
T Consensus       123 ~-~~~~LSgGq~QRvalAraL~  143 (348)
T 3d31_A          123 R-NPLTLSGGEQQRVALARALV  143 (348)
T ss_dssp             S-CGGGSCHHHHHHHHHHHHTT
T ss_pred             C-ChhhCCHHHHHHHHHHHHHH
Confidence            5 67999999999999999975

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.96  E-value=1e-29  Score=234.02  Aligned_cols=149  Identities=23%  Similarity=0.275  Sum_probs=115.1

Q ss_pred             CCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684         176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV  255 (356)
Q Consensus       176 ~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv  255 (356)
                      ..++++++|+++.| +++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...        
T Consensus        18 ~~~~l~~~~l~~~y-~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~--------   88 (279)
T 2ihy_A           18 SHMLIQLDQIGRMK-QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKV--------   88 (279)
T ss_dssp             -CEEEEEEEEEEEE-TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC----------
T ss_pred             CCceEEEEeEEEEE-CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccc--------
Confidence            34579999999999 567899999999999999999999999999999999999999999999998664200        


Q ss_pred             cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-------C-CC---HHHHHHHH
Q psy2684         256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-------N-LP---YEKSRRQL  324 (356)
Q Consensus       256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-------~-~~---~~~~~~~L  324 (356)
                            +               ... ...+.++||++|++...+....|+.|++....       . ..   .+.+.++|
T Consensus        89 ------~---------------~~~-~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l  146 (279)
T 2ihy_A           89 ------G---------------YSA-ETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLL  146 (279)
T ss_dssp             ----------------------CCH-HHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHH
T ss_pred             ------c---------------CCH-HHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHH
Confidence                  0               000 00124699999987433444579999885421       1 11   23467889


Q ss_pred             hhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         325 GMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       325 ~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +.+|+.+...+ ++.+|||||||||+||++++
T Consensus       147 ~~~gl~~~~~~-~~~~LSgGqkqRv~lAraL~  177 (279)
T 2ihy_A          147 KLVGMSAKAQQ-YIGYLSTGEKQRVMIARALM  177 (279)
T ss_dssp             HHTTCGGGTTS-BGGGSCHHHHHHHHHHHHHH
T ss_pred             HHcCChhHhcC-ChhhCCHHHHHHHHHHHHHh
Confidence            99999876654 77999999999999999973

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.95  E-value=8.6e-29  Score=223.12  Aligned_cols=137  Identities=26%  Similarity=0.372  Sum_probs=112.5

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      +++++|+++.| ++  +|+++||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++...           
T Consensus         1 ml~~~~l~~~y-~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----------   65 (240)
T 2onk_A            1 MFLKVRAEKRL-GN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPL-----------   65 (240)
T ss_dssp             CCEEEEEEEEE-TT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS-----------
T ss_pred             CEEEEEEEEEe-CC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcC-----------
Confidence            47899999999 43  59999999999 99999999999999999999999999999999998765210           


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCC-----CHHHHHHHHhhcCCCCcc
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNL-----PYEKSRRQLGMFGLPSYA  333 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~-----~~~~~~~~L~~~~l~~~~  333 (356)
                                             ...+.++||++|++  .+++.+|+.|++......     ..+.+.++++.+|+.+..
T Consensus        66 -----------------------~~~~~~i~~v~q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~  120 (240)
T 2onk_A           66 -----------------------PPERRGIGFVPQDY--ALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLL  120 (240)
T ss_dssp             -----------------------CTTTSCCBCCCSSC--CCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTT
T ss_pred             -----------------------chhhCcEEEEcCCC--ccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHh
Confidence                                   01134699999986  478889999998643221     124567899999998766


Q ss_pred             ccCCCCCCChHHHHHHHHHHHcC
Q psy2684         334 HTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       334 ~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .. ++.+|||||||||+||++++
T Consensus       121 ~~-~~~~LSgGqkqRv~lAral~  142 (240)
T 2onk_A          121 DR-KPARLSGGERQRVALARALV  142 (240)
T ss_dssp             TC-CGGGSCHHHHHHHHHHHHHT
T ss_pred             cC-ChhhCCHHHHHHHHHHHHHH
Confidence            54 67999999999999999974

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.95  E-value=5.2e-29  Score=225.24  Aligned_cols=143  Identities=27%  Similarity=0.342  Sum_probs=113.5

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      +++++|+++.|++++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...           
T Consensus         1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----------   69 (243)
T 1mv5_A            1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNI-----------   69 (243)
T ss_dssp             CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTT-----------
T ss_pred             CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhC-----------
Confidence            478999999995456799999999999999999999999999999999999999999999998775310           


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh--cCCCHHHHHHHHhhcCCCCcccc-
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL--FNLPYEKSRRQLGMFGLPSYAHT-  335 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~--~~~~~~~~~~~L~~~~l~~~~~~-  335 (356)
                                     .      ....+.++||++|++.  +++ .|+.+++...  ......++.++++.+++.+.... 
T Consensus        70 ---------------~------~~~~~~~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~  125 (243)
T 1mv5_A           70 ---------------S------LENWRSQIGFVSQDSA--IMA-GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENM  125 (243)
T ss_dssp             ---------------S------CSCCTTTCCEECCSSC--CCC-EEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSS
T ss_pred             ---------------C------HHHHHhhEEEEcCCCc--ccc-ccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhC
Confidence                           0      0112346999999973  565 4999987542  23345667788888888765432 


Q ss_pred             ---------CCCCCCChHHHHHHHHHHHcC
Q psy2684         336 ---------IPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       336 ---------~~~~~LSGGqkqRvalA~~~l  356 (356)
                               +++.+|||||||||+|||+++
T Consensus       126 ~~gl~~~~~~~~~~LSgGq~qrv~lAral~  155 (243)
T 1mv5_A          126 PDQLNTEVGERGVKISGGQRQRLAIARAFL  155 (243)
T ss_dssp             TTGGGCEESTTSBCCCHHHHHHHHHHHHHH
T ss_pred             ccchhchhccCcCcCCHHHHHHHHHHHHHh
Confidence                     245799999999999999973

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.95  E-value=1.1e-28  Score=226.05  Aligned_cols=141  Identities=26%  Similarity=0.346  Sum_probs=114.2

Q ss_pred             cEEEecceeeeC-CC---ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeee
Q psy2684         179 VLGLHDVTFGYP-GG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVAL  254 (356)
Q Consensus       179 ~l~~~~l~~~~~-~~---~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ial  254 (356)
                      +++++|+++.|+ ++   +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..        
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~--------   73 (266)
T 2yz2_A            2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKG--------   73 (266)
T ss_dssp             CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCH--------
T ss_pred             EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECch--------
Confidence            589999999995 23   569999999999999999999999999999999999999999999999866420        


Q ss_pred             ecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC--C----CHHHHHHHHhhcC
Q psy2684         255 VGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN--L----PYEKSRRQLGMFG  328 (356)
Q Consensus       255 vG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~--~----~~~~~~~~L~~~~  328 (356)
                                               .  ..+.++||++|++.. ++...|+.+++.....  .    ..+.+.++++.+|
T Consensus        74 -------------------------~--~~~~~i~~v~q~~~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~g  125 (266)
T 2yz2_A           74 -------------------------Y--EIRRNIGIAFQYPED-QFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVG  125 (266)
T ss_dssp             -------------------------H--HHGGGEEEECSSGGG-GCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTT
T ss_pred             -------------------------H--HhhhhEEEEeccchh-hcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcC
Confidence                                     0  112469999998632 3456899998864311  1    2356788999999


Q ss_pred             CC--CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         329 LP--SYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       329 l~--~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +.  +..+. ++.+|||||||||+||++++
T Consensus       126 l~~~~~~~~-~~~~LSgGq~qRv~lAraL~  154 (266)
T 2yz2_A          126 LDFDSFKDR-VPFFLSGGEKRRVAIASVIV  154 (266)
T ss_dssp             CCHHHHTTC-CGGGSCHHHHHHHHHHHHHT
T ss_pred             cCCcccccC-ChhhCCHHHHHHHHHHHHHH
Confidence            98  66554 67999999999999999974

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.95  E-value=1.1e-28  Score=223.58  Aligned_cols=142  Identities=23%  Similarity=0.377  Sum_probs=110.3

Q ss_pred             EEEecceeeeC-CCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         180 LGLHDVTFGYP-GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       180 l~~~~l~~~~~-~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      ++++|+++.|+ +++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....          
T Consensus         8 ~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~----------   77 (247)
T 2ff7_A            8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD----------   77 (247)
T ss_dssp             EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSC----------
T ss_pred             eeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCC----------
Confidence            78999999994 3467999999999999999999999999999999999999999999999987753100          


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHhhcCCCCccc---
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYAH---  334 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~L~~~~l~~~~~---  334 (356)
                                           . ...+.++||++|++.  +++ .|+.+++.... ....+++.++++.+++.....   
T Consensus        78 ---------------------~-~~~~~~i~~v~Q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~  132 (247)
T 2ff7_A           78 ---------------------P-NWLRRQVGVVLQDNV--LLN-RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELR  132 (247)
T ss_dssp             ---------------------H-HHHHHHEEEECSSCC--CTT-SBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTST
T ss_pred             ---------------------H-HHHHhcEEEEeCCCc--ccc-ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCc
Confidence                                 0 001246999999873  554 59999985432 234455667777777653322   


Q ss_pred             -------cCCCCCCChHHHHHHHHHHHcC
Q psy2684         335 -------TIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       335 -------~~~~~~LSGGqkqRvalA~~~l  356 (356)
                             .+++.+|||||||||+|||+++
T Consensus       133 ~gl~~~~~~~~~~LSgGq~qRv~iAraL~  161 (247)
T 2ff7_A          133 EGYNTIVGEQGAGLSGGQRQRIAIARALV  161 (247)
T ss_dssp             TGGGCBCSTTTTCCCHHHHHHHHHHHHHT
T ss_pred             chhhhhhhCCCCCCCHHHHHHHHHHHHHh
Confidence                   1246899999999999999975

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.95  E-value=8.1e-29  Score=230.38  Aligned_cols=143  Identities=29%  Similarity=0.358  Sum_probs=111.7

Q ss_pred             CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      ..++++||+|.|+++..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++....         
T Consensus        52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~---------  122 (306)
T 3nh6_A           52 GRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVT---------  122 (306)
T ss_dssp             CCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBC---------
T ss_pred             CeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCC---------
Confidence            35899999999966678999999999999999999999999999999999999999999999998863100         


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHhhcCCCC-----
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPS-----  331 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~L~~~~l~~-----  331 (356)
                                             ....+.+|||++|++.  +| ..|+.+++.... .....++++.++.+++..     
T Consensus       123 -----------------------~~~~r~~i~~v~Q~~~--lf-~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~l  176 (306)
T 3nh6_A          123 -----------------------QASLRSHIGVVPQDTV--LF-NDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAF  176 (306)
T ss_dssp             -----------------------HHHHHHTEEEECSSCC--CC-SEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHS
T ss_pred             -----------------------HHHHhcceEEEecCCc--cC-cccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhc
Confidence                                   0011346999999973  56 459999986533 334555666666555532     


Q ss_pred             ------ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         332 ------YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       332 ------~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                            ... .+..+|||||||||+|||+++
T Consensus       177 p~gl~t~~~-~~g~~LSGGqrQRvaiARAL~  206 (306)
T 3nh6_A          177 PEGYRTQVG-ERGLKLSGGEKQRVAIARTIL  206 (306)
T ss_dssp             TTGGGCEES-TTSBCCCHHHHHHHHHHHHHH
T ss_pred             cchhhhHhc-CCcCCCCHHHHHHHHHHHHHH
Confidence                  222 245789999999999999974

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.95  E-value=1.4e-28  Score=225.39  Aligned_cols=146  Identities=20%  Similarity=0.254  Sum_probs=111.9

Q ss_pred             CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccc--cccCCCceeEeeeccccCcCCeeee
Q psy2684         177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE--LTPNKGKVLLEKVNFGLDMESRVAL  254 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl--~~p~~G~i~~~g~~~~~~~~~~ial  254 (356)
                      .++++++|+++.| +++.+|+++||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|.++....      
T Consensus        18 ~~~l~~~~l~~~y-~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~------   90 (267)
T 2zu0_C           18 SHMLSIKDLHVSV-EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALS------   90 (267)
T ss_dssp             --CEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSC------
T ss_pred             CceEEEEeEEEEE-CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCC------
Confidence            4579999999999 567899999999999999999999999999999999999  5799999999987753100      


Q ss_pred             ecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-------cC---CCH----HHH
Q psy2684         255 VGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-------FN---LPY----EKS  320 (356)
Q Consensus       255 vG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-------~~---~~~----~~~  320 (356)
                                               .....+..++|++|++  .+++.+|+.+++...       ..   .+.    ..+
T Consensus        91 -------------------------~~~~~~~~i~~v~Q~~--~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (267)
T 2zu0_C           91 -------------------------PEDRAGEGIFMAFQYP--VEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLM  143 (267)
T ss_dssp             -------------------------HHHHHHHTEEEECSSC--CCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHH
T ss_pred             -------------------------HHHHhhCCEEEEccCc--cccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHH
Confidence                                     0000013489999987  467888998876431       11   122    346


Q ss_pred             HHHHhhcCCCCccccCCCC-CCChHHHHHHHHHHHcC
Q psy2684         321 RRQLGMFGLPSYAHTIPIR-DLSGGQKARVALAELTL  356 (356)
Q Consensus       321 ~~~L~~~~l~~~~~~~~~~-~LSGGqkqRvalA~~~l  356 (356)
                      .++++.+|+.....++++. +|||||||||+||++++
T Consensus       144 ~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~  180 (267)
T 2zu0_C          144 EEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAV  180 (267)
T ss_dssp             HHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHH
Confidence            7889999997433334666 59999999999999973

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.95  E-value=4.6e-28  Score=220.12  Aligned_cols=130  Identities=28%  Similarity=0.394  Sum_probs=108.6

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      +++++|+++.|++++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+                   
T Consensus         4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~-------------------   64 (253)
T 2nq2_C            4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV-------------------   64 (253)
T ss_dssp             EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE-------------------
T ss_pred             eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-------------------
Confidence            6899999999941577999999999999999999999999999999999999999998852                   


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc----C----CC---HHHHHHHHhhc
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF----N----LP---YEKSRRQLGMF  327 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~----~----~~---~~~~~~~L~~~  327 (356)
                                                +.++||++|++.  +++..|+.+++....    +    ..   .+.+.++++.+
T Consensus        65 --------------------------~~~i~~v~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  116 (253)
T 2nq2_C           65 --------------------------YQSIGFVPQFFS--SPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYL  116 (253)
T ss_dssp             --------------------------CSCEEEECSCCC--CSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHT
T ss_pred             --------------------------eccEEEEcCCCc--cCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHc
Confidence                                      135899999873  667889999986431    1    12   23467889999


Q ss_pred             CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         328 GLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       328 ~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      |+.+.... ++.+|||||||||+||++++
T Consensus       117 ~l~~~~~~-~~~~LSgGq~qrv~lAraL~  144 (253)
T 2nq2_C          117 NLTHLAKR-EFTSLSGGQRQLILIARAIA  144 (253)
T ss_dssp             TCGGGTTS-BGGGSCHHHHHHHHHHHHHH
T ss_pred             CChHHhcC-ChhhCCHHHHHHHHHHHHHH
Confidence            99876654 67999999999999999973

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.95  E-value=2.2e-28  Score=224.37  Aligned_cols=143  Identities=31%  Similarity=0.404  Sum_probs=110.4

Q ss_pred             CcEEEecceeeeCC--CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684         178 PVLGLHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV  255 (356)
Q Consensus       178 ~~l~~~~l~~~~~~--~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv  255 (356)
                      .+++++|+++.|++  +..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++....       
T Consensus        15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~-------   87 (271)
T 2ixe_A           15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYD-------   87 (271)
T ss_dssp             CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBC-------
T ss_pred             ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCC-------
Confidence            47999999999943  167999999999999999999999999999999999999999999999987753100       


Q ss_pred             cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC-CCH-HH---------HHHHH
Q psy2684         256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN-LPY-EK---------SRRQL  324 (356)
Q Consensus       256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~-~~~-~~---------~~~~L  324 (356)
                                               ....+.+|||++|++.  +++ .|+.|++..... ... ..         +.+++
T Consensus        88 -------------------------~~~~~~~i~~v~Q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l  139 (271)
T 2ixe_A           88 -------------------------HHYLHTQVAAVGQEPL--LFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFI  139 (271)
T ss_dssp             -------------------------HHHHHHHEEEECSSCC--CCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHH
T ss_pred             -------------------------HHHHhccEEEEecCCc--ccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHH
Confidence                                     0001246999999973  565 599999865321 111 11         23456


Q ss_pred             hhc--CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         325 GMF--GLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       325 ~~~--~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +.+  |+...... ++.+|||||||||+|||+|+
T Consensus       140 ~~l~~gl~~~~~~-~~~~LSgGq~QRv~lAraL~  172 (271)
T 2ixe_A          140 SGFPQGYDTEVGE-TGNQLSGGQRQAVALARALI  172 (271)
T ss_dssp             HHSTTGGGSBCCG-GGTTSCHHHHHHHHHHHHHT
T ss_pred             HhhhcchhhhhcC-CcCCCCHHHHHHHHHHHHHh
Confidence            666  67665554 67999999999999999975

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.95  E-value=2.1e-28  Score=222.20  Aligned_cols=143  Identities=27%  Similarity=0.371  Sum_probs=108.0

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccc--cccCCCceeEeeeccccCcCCeeeeec
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE--LTPNKGKVLLEKVNFGLDMESRVALVG  256 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl--~~p~~G~i~~~g~~~~~~~~~~ialvG  256 (356)
                      +++++|+++.| +++.+|+++||+|++||+++|+||||||||||+++|+|+  ++|++|+|.++|.++....        
T Consensus         3 ~l~~~~l~~~y-~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~--------   73 (250)
T 2d2e_A            3 QLEIRDLWASI-DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELS--------   73 (250)
T ss_dssp             EEEEEEEEEEE-TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSC--------
T ss_pred             eEEEEeEEEEE-CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCC--------
Confidence            68999999999 567899999999999999999999999999999999999  8999999999987753100        


Q ss_pred             CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh----cC--CC----HHHHHHHHhh
Q psy2684         257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL----FN--LP----YEKSRRQLGM  326 (356)
Q Consensus       257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~----~~--~~----~~~~~~~L~~  326 (356)
                                          ...   ..+..++|++|++  .+++.+|+.+++...    .+  ..    ...+.++++.
T Consensus        74 --------------------~~~---~~~~~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~  128 (250)
T 2d2e_A           74 --------------------PDE---RARKGLFLAFQYP--VEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALEL  128 (250)
T ss_dssp             --------------------HHH---HHHTTBCCCCCCC--C-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred             --------------------HHH---HHhCcEEEeccCC--ccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHH
Confidence                                000   0012488999987  367888999987431    12  12    2346778999


Q ss_pred             cCCC-CccccCCCCC-CChHHHHHHHHHHHcC
Q psy2684         327 FGLP-SYAHTIPIRD-LSGGQKARVALAELTL  356 (356)
Q Consensus       327 ~~l~-~~~~~~~~~~-LSGGqkqRvalA~~~l  356 (356)
                      +|+. +..+ +++.+ |||||||||+||++++
T Consensus       129 ~gl~~~~~~-~~~~~~LSgGqkQrv~iAraL~  159 (250)
T 2d2e_A          129 LDWDESYLS-RYLNEGFSGGEKKRNEILQLLV  159 (250)
T ss_dssp             HTCCGGGGG-SBTTCC----HHHHHHHHHHHH
T ss_pred             cCCChhHhc-CCcccCCCHHHHHHHHHHHHHH
Confidence            9995 5444 47788 9999999999999973

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.94  E-value=4.6e-28  Score=219.48  Aligned_cols=137  Identities=25%  Similarity=0.247  Sum_probs=112.0

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      +++++|+++.     .+|+++||+|++||+++|+||||||||||+++|+|+++|+ |+|.++|.++....          
T Consensus         4 ~l~~~~l~~~-----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~----------   67 (249)
T 2qi9_C            4 VMQLQDVAES-----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWS----------   67 (249)
T ss_dssp             EEEEEEEEET-----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSC----------
T ss_pred             EEEEEceEEE-----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCC----------
Confidence            6899999975     5899999999999999999999999999999999999999 99999987652100          


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc--CCCHHHHHHHHhhcCCCCccccC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF--NLPYEKSRRQLGMFGLPSYAHTI  336 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~--~~~~~~~~~~L~~~~l~~~~~~~  336 (356)
                                            ....+.++||++|++.  +++..|+.|++....  ....+.+.++++.+|+.+..++ 
T Consensus        68 ----------------------~~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~-  122 (249)
T 2qi9_C           68 ----------------------ATKLALHRAYLSQQQT--PPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGR-  122 (249)
T ss_dssp             ----------------------HHHHHHHEEEECSCCC--CCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTS-
T ss_pred             ----------------------HHHHhceEEEECCCCc--cCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcC-
Confidence                                  0001246999999874  677889999986432  1235667889999999876654 


Q ss_pred             CCCCCChHHHHHHHHHHHcC
Q psy2684         337 PIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       337 ~~~~LSGGqkqRvalA~~~l  356 (356)
                      ++.+|||||||||+||++++
T Consensus       123 ~~~~LSgGq~qrv~lAraL~  142 (249)
T 2qi9_C          123 STNQLSGGEWQRVRLAAVVL  142 (249)
T ss_dssp             BGGGCCHHHHHHHHHHHHHH
T ss_pred             ChhhCCHHHHHHHHHHHHHH
Confidence            67999999999999999974

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.94  E-value=8.5e-28  Score=219.31  Aligned_cols=136  Identities=21%  Similarity=0.347  Sum_probs=112.2

Q ss_pred             cEEEecceeeeCCC---ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684         179 VLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV  255 (356)
Q Consensus       179 ~l~~~~l~~~~~~~---~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv  255 (356)
                      +++++|+++.|+++   +.+|+++||+|+ |++++|+||||||||||+++|+|++ |++|+|.++|.++..         
T Consensus         1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~---------   69 (263)
T 2pjz_A            1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRK---------   69 (263)
T ss_dssp             CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGG---------
T ss_pred             CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcc---------
Confidence            47899999999431   679999999999 9999999999999999999999999 999999999876520         


Q ss_pred             cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEE-EeecCcCCCCCCCCCHHHHHHHh---cCCCHHHHHHHHhhcCCC-
Q psy2684         256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIG-KFDQHSGEHLFPDDTPCEYLMKL---FNLPYEKSRRQLGMFGLP-  330 (356)
Q Consensus       256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig-~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~~~~~~~L~~~~l~-  330 (356)
                                              . .. +.+++ |++|++.  +  ..|+.+++...   .....+.+.++++.+|+. 
T Consensus        70 ------------------------~-~~-~~~i~~~v~Q~~~--l--~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~  119 (263)
T 2pjz_A           70 ------------------------I-RN-YIRYSTNLPEAYE--I--GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGE  119 (263)
T ss_dssp             ------------------------C-SC-CTTEEECCGGGSC--T--TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCG
T ss_pred             ------------------------h-HH-hhheEEEeCCCCc--c--CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCCh
Confidence                                    0 11 34699 9999874  3  78999987542   234566788999999998 


Q ss_pred             CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         331 SYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       331 ~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +... +++.+|||||||||+||++++
T Consensus       120 ~~~~-~~~~~LSgGqkqRv~lAraL~  144 (263)
T 2pjz_A          120 EILR-RKLYKLSAGQSVLVRTSLALA  144 (263)
T ss_dssp             GGGG-SBGGGSCHHHHHHHHHHHHHH
T ss_pred             hHhc-CChhhCCHHHHHHHHHHHHHH
Confidence            6555 477999999999999999973

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.94  E-value=3.3e-28  Score=233.24  Aligned_cols=142  Identities=26%  Similarity=0.322  Sum_probs=115.6

Q ss_pred             CcEEEecceeeeC-CCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684         178 PVLGLHDVTFGYP-GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG  256 (356)
Q Consensus       178 ~~l~~~~l~~~~~-~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG  256 (356)
                      ..++++|+++.|+ ++..+|+++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++....        
T Consensus        18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~--------   88 (390)
T 3gd7_A           18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSIT--------   88 (390)
T ss_dssp             CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSC--------
T ss_pred             CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCC--------
Confidence            4699999999995 34679999999999999999999999999999999999998 8999999988763100        


Q ss_pred             CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCccccC
Q psy2684         257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTI  336 (356)
Q Consensus       257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~~~  336 (356)
                                              ....++++||+||++.  +|+ .|+.+++........++++++++.+++.+...+ 
T Consensus        89 ------------------------~~~~rr~ig~v~Q~~~--lf~-~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~-  140 (390)
T 3gd7_A           89 ------------------------LEQWRKAFGVIPQKVF--IFS-GTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQ-  140 (390)
T ss_dssp             ------------------------HHHHHHTEEEESCCCC--CCS-EEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTT-
T ss_pred             ------------------------hHHHhCCEEEEcCCcc--cCc-cCHHHHhhhccccCHHHHHHHHHHhCCHHHHhh-
Confidence                                    0001346999999973  665 699999854334556778899999999876665 


Q ss_pred             CCCC-----------CChHHHHHHHHHHHcC
Q psy2684         337 PIRD-----------LSGGQKARVALAELTL  356 (356)
Q Consensus       337 ~~~~-----------LSGGqkqRvalA~~~l  356 (356)
                      ++..           |||||||||+|||+|+
T Consensus       141 ~p~~l~~~i~~~g~~LSGGqrQRvalARAL~  171 (390)
T 3gd7_A          141 FPGKLDFVLVDGGCVLSHGHKQLMCLARSVL  171 (390)
T ss_dssp             STTGGGCEECTTTTTSCHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccCCHHHHHHHHHHHHHh
Confidence            4566           9999999999999973

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.94  E-value=1.7e-27  Score=213.32  Aligned_cols=131  Identities=27%  Similarity=0.363  Sum_probs=102.0

Q ss_pred             CcEEEecceeeeCC-CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684         178 PVLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG  256 (356)
Q Consensus       178 ~~l~~~~l~~~~~~-~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG  256 (356)
                      .+++++|+++.|++ ++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|               
T Consensus         5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g---------------   69 (229)
T 2pze_A            5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---------------   69 (229)
T ss_dssp             EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS---------------
T ss_pred             ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC---------------
Confidence            36899999999952 46799999999999999999999999999999999999999999998863               


Q ss_pred             CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCcc---
Q psy2684         257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYA---  333 (356)
Q Consensus       257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~---  333 (356)
                                                    +++|++|++.  +++. |+.|++............+.++.+++....   
T Consensus        70 ------------------------------~i~~v~q~~~--~~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~  116 (229)
T 2pze_A           70 ------------------------------RISFCSQFSW--IMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKF  116 (229)
T ss_dssp             ------------------------------CEEEECSSCC--CCSB-CHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTS
T ss_pred             ------------------------------EEEEEecCCc--ccCC-CHHHHhhccCCcChHHHHHHHHHhCcHHHHHhC
Confidence                                          3899999873  5664 999998653222333334444444443211   


Q ss_pred             -------ccCCCCCCChHHHHHHHHHHHcC
Q psy2684         334 -------HTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       334 -------~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                             ..+++.+|||||||||+|||+++
T Consensus       117 ~~~~~~~~~~~~~~LSgGqkqrv~lAral~  146 (229)
T 2pze_A          117 AEKDNIVLGEGGITLSGGQRARISLARAVY  146 (229)
T ss_dssp             TTGGGSCBCTTCTTSCHHHHHHHHHHHHHH
T ss_pred             cccccccccCCCCcCCHHHHHHHHHHHHHh
Confidence                   11245899999999999999973

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.94  E-value=1.9e-27  Score=214.09  Aligned_cols=130  Identities=25%  Similarity=0.315  Sum_probs=100.5

Q ss_pred             cEEEecceeeeCC-CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         179 VLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       179 ~l~~~~l~~~~~~-~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      +++++|+++.|++ ++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|                
T Consensus         3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g----------------   66 (237)
T 2cbz_A            3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG----------------   66 (237)
T ss_dssp             CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS----------------
T ss_pred             eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC----------------
Confidence            5899999999943 46799999999999999999999999999999999999999999998863                


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcC------CCC
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFG------LPS  331 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~------l~~  331 (356)
                                                   ++||++|++.  + ...|+.+++...........++.++.++      +.+
T Consensus        67 -----------------------------~i~~v~Q~~~--~-~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~  114 (237)
T 2cbz_A           67 -----------------------------SVAYVPQQAW--I-QNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILP  114 (237)
T ss_dssp             -----------------------------CEEEECSSCC--C-CSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTST
T ss_pred             -----------------------------EEEEEcCCCc--C-CCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhcc
Confidence                                         3799999863  3 4779999986533222222333333333      211


Q ss_pred             c----cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         332 Y----AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       332 ~----~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .    ...+++.+|||||||||+|||+++
T Consensus       115 ~~~~~~~~~~~~~LSgGqkqRv~lAraL~  143 (237)
T 2cbz_A          115 SGDRTEIGEKGVNLSGGQKQRVSLARAVY  143 (237)
T ss_dssp             TGGGSEESTTSBCCCHHHHHHHHHHHHHH
T ss_pred             ccccccccCCCCCCCHHHHHHHHHHHHHh
Confidence            1    113467899999999999999973

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.94  E-value=2.7e-27  Score=216.01  Aligned_cols=143  Identities=28%  Similarity=0.301  Sum_probs=109.1

Q ss_pred             CcEEEecceeeeCCC--ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684         178 PVLGLHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV  255 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~--~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv  255 (356)
                      .+++++|+++.|++.  ..+|+++||+|++|++++|+||||||||||+++|+|+++| +|+|.++|.++....       
T Consensus        16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~-------   87 (260)
T 2ghi_A           16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYN-------   87 (260)
T ss_dssp             CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBC-------
T ss_pred             CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcC-------
Confidence            469999999999532  4699999999999999999999999999999999999987 899999987753100       


Q ss_pred             cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHhhcCCCCcc-
Q psy2684         256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYA-  333 (356)
Q Consensus       256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~L~~~~l~~~~-  333 (356)
                                               ....+.+++|++|++.  +++ .|+.+++.... ....+++.+.++.+++.... 
T Consensus        88 -------------------------~~~~~~~i~~v~Q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~  139 (260)
T 2ghi_A           88 -------------------------RNSIRSIIGIVPQDTI--LFN-ETIKYNILYGKLDATDEEVIKATKSAQLYDFIE  139 (260)
T ss_dssp             -------------------------HHHHHTTEEEECSSCC--CCS-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHH
T ss_pred             -------------------------HHHHhccEEEEcCCCc--ccc-cCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHH
Confidence                                     0001246999999973  554 59999986432 23445566777777763321 


Q ss_pred             ---------ccCCCCCCChHHHHHHHHHHHcC
Q psy2684         334 ---------HTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       334 ---------~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                               ..+++.+|||||||||+|||+++
T Consensus       140 ~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~  171 (260)
T 2ghi_A          140 ALPKKWDTIVGNKGMKLSGGERQRIAIARCLL  171 (260)
T ss_dssp             TSTTGGGCEESSSSBCCCHHHHHHHHHHHHHH
T ss_pred             hccccccccccCCcCcCCHHHHHHHHHHHHHH
Confidence                     12356899999999999999973

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.93  E-value=5.2e-26  Score=230.17  Aligned_cols=144  Identities=28%  Similarity=0.336  Sum_probs=114.1

Q ss_pred             CcEEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684         178 PVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG  256 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG  256 (356)
                      ..++++|+++.|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...         
T Consensus       340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~---------  410 (582)
T 3b5x_A          340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDY---------  410 (582)
T ss_pred             CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhC---------
Confidence            469999999999543 6799999999999999999999999999999999999999999999999876310         


Q ss_pred             CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc--CCCHHHHHHHHhhcCCCCccc
Q psy2684         257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF--NLPYEKSRRQLGMFGLPSYAH  334 (356)
Q Consensus       257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~--~~~~~~~~~~L~~~~l~~~~~  334 (356)
                                         .    ....+.++||++|++.  +++ .|+.|++....  +.+.+++++.++.+++.+...
T Consensus       411 -------------------~----~~~~~~~i~~v~Q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~  464 (582)
T 3b5x_A          411 -------------------K----LTNLRRHFALVSQNVH--LFN-DTIANNIAYAAEGEYTREQIEQAARQAHAMEFIE  464 (582)
T ss_pred             -------------------C----HHHHhcCeEEEcCCCc--ccc-ccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHH
Confidence                               0    0011346999999973  565 49999986532  345667788888887754322


Q ss_pred             c----------CCCCCCChHHHHHHHHHHHcC
Q psy2684         335 T----------IPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       335 ~----------~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .          .+..+||||||||++|||+++
T Consensus       465 ~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~  496 (582)
T 3b5x_A          465 NMPQGLDTVIGENGTSLSGGQRQRVAIARALL  496 (582)
T ss_pred             hCcccccchhcCCCCcCCHHHHHHHHHHHHHH
Confidence            2          134799999999999999974

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.92  E-value=4.8e-26  Score=230.43  Aligned_cols=144  Identities=28%  Similarity=0.340  Sum_probs=114.2

Q ss_pred             CcEEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684         178 PVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG  256 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG  256 (356)
                      ..++++|+++.|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....        
T Consensus       340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~--------  411 (582)
T 3b60_A          340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYT--------  411 (582)
T ss_dssp             CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBC--------
T ss_pred             CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccC--------
Confidence            469999999999533 67999999999999999999999999999999999999999999999998763100        


Q ss_pred             CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc--CCCHHHHHHHHhhcCCCCccc
Q psy2684         257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF--NLPYEKSRRQLGMFGLPSYAH  334 (356)
Q Consensus       257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~--~~~~~~~~~~L~~~~l~~~~~  334 (356)
                                              ....+.++||++|++.  +++ .|+.|++....  ..+.+++++.++.+++.+...
T Consensus       412 ------------------------~~~~~~~i~~v~Q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~  464 (582)
T 3b60_A          412 ------------------------LASLRNQVALVSQNVH--LFN-DTVANNIAYARTEEYSREQIEEAARMAYAMDFIN  464 (582)
T ss_dssp             ------------------------HHHHHHTEEEECSSCC--CCS-SBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHH
T ss_pred             ------------------------HHHHHhhCeEEccCCc--CCC-CCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHH
Confidence                                    0011346999999973  565 49999986532  455677888888887743322


Q ss_pred             c----------CCCCCCChHHHHHHHHHHHcC
Q psy2684         335 T----------IPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       335 ~----------~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .          .+..+|||||||||+|||+++
T Consensus       465 ~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~  496 (582)
T 3b60_A          465 KMDNGLDTIIGENGVLLSGGQRQRIAIARALL  496 (582)
T ss_dssp             HSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred             hccccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence            1          245799999999999999974

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.92  E-value=1.7e-25  Score=226.20  Aligned_cols=144  Identities=28%  Similarity=0.360  Sum_probs=111.2

Q ss_pred             CcEEEecceeeeCC-CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684         178 PVLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG  256 (356)
Q Consensus       178 ~~l~~~~l~~~~~~-~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG  256 (356)
                      .-++++|+++.|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....        
T Consensus       338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~--------  409 (578)
T 4a82_A          338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFL--------  409 (578)
T ss_dssp             CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSC--------
T ss_pred             CeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCC--------
Confidence            35899999999964 357999999999999999999999999999999999999999999999998864110        


Q ss_pred             CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHhhcCCCCcccc
Q psy2684         257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYAHT  335 (356)
Q Consensus       257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~L~~~~l~~~~~~  335 (356)
                                              ....+.++||++|++  .+++. |+.|++.... ....+++.+.++..++.+....
T Consensus       410 ------------------------~~~~r~~i~~v~Q~~--~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~  462 (578)
T 4a82_A          410 ------------------------TGSLRNQIGLVQQDN--ILFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFIMN  462 (578)
T ss_dssp             ------------------------HHHHHHTEEEECSSC--CCCSS-BHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHT
T ss_pred             ------------------------HHHHhhheEEEeCCC--ccCcc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHh
Confidence                                    001134699999997  36654 9999986432 3455666677766655322211


Q ss_pred             ----------CCCCCCChHHHHHHHHHHHcC
Q psy2684         336 ----------IPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       336 ----------~~~~~LSGGqkqRvalA~~~l  356 (356)
                                .+..+|||||||||+|||+++
T Consensus       463 lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~  493 (578)
T 4a82_A          463 LPQGYDTEVGERGVKLSGGQKQRLSIARIFL  493 (578)
T ss_dssp             STTGGGCBCCGGGTTSCHHHHHHHHHHHHHH
T ss_pred             CcchhhhhhccCCCcCCHHHHHHHHHHHHHH
Confidence                      133689999999999999973

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.92  E-value=1.2e-25  Score=228.00  Aligned_cols=143  Identities=29%  Similarity=0.390  Sum_probs=112.4

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      -++++|+++.|+++.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....          
T Consensus       354 ~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~----------  423 (598)
T 3qf4_B          354 EIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIK----------  423 (598)
T ss_dssp             CEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSC----------
T ss_pred             eEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCC----------
Confidence            5899999999965667999999999999999999999999999999999999999999999998874110          


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHhhcCCCCccccCC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYAHTIP  337 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~L~~~~l~~~~~~~~  337 (356)
                                            ....+.++||++|++  .+++ .|+.|++.... ..+.+++++.++.+++.+.....|
T Consensus       424 ----------------------~~~~r~~i~~v~Q~~--~lf~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (598)
T 3qf4_B          424 ----------------------RSSLRSSIGIVLQDT--ILFS-TTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLP  478 (598)
T ss_dssp             ----------------------HHHHHHHEEEECTTC--CCCS-SBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTST
T ss_pred             ----------------------HHHHHhceEEEeCCC--cccc-ccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhcc
Confidence                                  001135799999997  3554 59999986432 345566777777776644332211


Q ss_pred             ----------CCCCChHHHHHHHHHHHcC
Q psy2684         338 ----------IRDLSGGQKARVALAELTL  356 (356)
Q Consensus       338 ----------~~~LSGGqkqRvalA~~~l  356 (356)
                                ..+|||||||||+|||+++
T Consensus       479 ~g~~t~~~~~g~~LSgGq~Qrv~iAral~  507 (598)
T 3qf4_B          479 EGYETVLTDNGEDLSQGQRQLLAITRAFL  507 (598)
T ss_dssp             TGGGCBCHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             ccccchhcCCCCCCCHHHHHHHHHHHHHh
Confidence                      2689999999999999973

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.91  E-value=1.9e-25  Score=206.55  Aligned_cols=127  Identities=27%  Similarity=0.370  Sum_probs=88.5

Q ss_pred             CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      ++++++|+++.+   +.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|                
T Consensus        39 ~~l~~~~l~~~~---~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g----------------   99 (290)
T 2bbs_A           39 DSLSFSNFSLLG---TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----------------   99 (290)
T ss_dssp             -----------C---CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS----------------
T ss_pred             ceEEEEEEEEcC---ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC----------------
Confidence            468999999854   4699999999999999999999999999999999999999999998752                


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCccc---
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAH---  334 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~~~---  334 (356)
                                                   +++|++|++.  +++. |+.+++. ..........+.+..+++.....   
T Consensus       100 -----------------------------~i~~v~Q~~~--l~~~-tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~  146 (290)
T 2bbs_A          100 -----------------------------RISFCSQNSW--IMPG-TIKENII-GVSYDEYRYRSVIKACQLEEDISKFA  146 (290)
T ss_dssp             -----------------------------CEEEECSSCC--CCSS-BHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTST
T ss_pred             -----------------------------EEEEEeCCCc--cCcc-cHHHHhh-CcccchHHHHHHHHHhChHHHHHhcc
Confidence                                         3899999873  5654 9999987 32223333444555555532111   


Q ss_pred             -------cCCCCCCChHHHHHHHHHHHcC
Q psy2684         335 -------TIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       335 -------~~~~~~LSGGqkqRvalA~~~l  356 (356)
                             ..++.+|||||||||+|||+++
T Consensus       147 ~~~~~~~~~~~~~LSgGq~QRv~lAraL~  175 (290)
T 2bbs_A          147 EKDNIVLGEGGITLSGGQRARISLARAVY  175 (290)
T ss_dssp             TGGGCBC----CCCCHHHHHHHHHHHHHH
T ss_pred             ccccchhcCccCcCCHHHHHHHHHHHHHH
Confidence                   1235799999999999999973

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.91  E-value=5.9e-25  Score=222.43  Aligned_cols=143  Identities=27%  Similarity=0.347  Sum_probs=110.0

Q ss_pred             CcEEEecceeeeCC-CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684         178 PVLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG  256 (356)
Q Consensus       178 ~~l~~~~l~~~~~~-~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG  256 (356)
                      ..++++|+++.|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....        
T Consensus       340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~--------  411 (587)
T 3qf4_A          340 GSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVK--------  411 (587)
T ss_dssp             CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBC--------
T ss_pred             CcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCC--------
Confidence            35899999999963 457999999999999999999999999999999999999999999999998864110        


Q ss_pred             CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHhhcCC------
Q psy2684         257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGL------  329 (356)
Q Consensus       257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~L~~~~l------  329 (356)
                                              ....+.+++|++|++.  +++ .|+.|++.... ....+++.+.++..++      
T Consensus       412 ------------------------~~~~r~~i~~v~Q~~~--lf~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~  464 (587)
T 3qf4_A          412 ------------------------LKDLRGHISAVPQETV--LFS-GTIKENLKWGREDATDDEIVEAAKIAQIHDFIIS  464 (587)
T ss_dssp             ------------------------HHHHHHHEEEECSSCC--CCS-EEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHT
T ss_pred             ------------------------HHHHHhheEEECCCCc--CcC-ccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHh
Confidence                                    0011357999999973  564 49999985432 2445555555544443      


Q ss_pred             -----CCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         330 -----PSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       330 -----~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                           .....+ +..+||||||||++|||+++
T Consensus       465 l~~g~~~~~~~-~~~~LSgGqrQrv~lARal~  495 (587)
T 3qf4_A          465 LPEGYDSRVER-GGRNFSGGQKQRLSIARALV  495 (587)
T ss_dssp             SSSGGGCEECS-SSCSSCHHHHHHHHHHHHHH
T ss_pred             cccchhhHhcC-CCCCcCHHHHHHHHHHHHHH
Confidence                 333333 55899999999999999973

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.90  E-value=8.8e-24  Score=193.88  Aligned_cols=91  Identities=29%  Similarity=0.442  Sum_probs=82.0

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||||||+||+||+.+|++|||||||++||+.++..+.++++++    +.|||+||||++++..+||+|++
T Consensus       137 ~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~  216 (275)
T 3gfo_A          137 KDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFV  216 (275)
T ss_dssp             TTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEE
T ss_pred             hcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEE
Confidence            47889999999999999999999999999999999999999998887777643    67999999999999999999999


Q ss_pred             EeCCeEeEecCCHHHH
Q psy2684          78 LDMKKLFYYKGNFTLF   93 (356)
Q Consensus        78 l~~g~~~~~~g~~~~~   93 (356)
                      |++|+++. .|+.++.
T Consensus       217 l~~G~i~~-~g~~~~~  231 (275)
T 3gfo_A          217 MKEGRVIL-QGNPKEV  231 (275)
T ss_dssp             EETTEEEE-EECHHHH
T ss_pred             EECCEEEE-ECCHHHH
Confidence            99999986 4666544

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.90  E-value=1e-23  Score=199.54  Aligned_cols=90  Identities=26%  Similarity=0.417  Sum_probs=81.6

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||||||+||+||+.+|+||||||||++||+.++..+.++|++    .+.|||+||||++++..+||||++
T Consensus       157 ~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~v  236 (366)
T 3tui_C          157 HDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAV  236 (366)
T ss_dssp             TTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEE
T ss_pred             hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEE
Confidence            4789999999999999999999999999999999999999998888777765    378999999999999999999999


Q ss_pred             EeCCeEeEecCCHHH
Q psy2684          78 LDMKKLFYYKGNFTL   92 (356)
Q Consensus        78 l~~g~~~~~~g~~~~   92 (356)
                      |++|+++. .|+.++
T Consensus       237 l~~G~iv~-~g~~~e  250 (366)
T 3tui_C          237 ISNGELIE-QDTVSE  250 (366)
T ss_dssp             EETTEEEE-CCBHHH
T ss_pred             EECCEEEE-EcCHHH
Confidence            99999986 465544

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.90  E-value=1.4e-23  Score=189.10  Aligned_cols=91  Identities=32%  Similarity=0.430  Sum_probs=82.2

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+||||||||++||+||+.+|++|||||||++||+.++..+.++++++    +.|||+||||++++..+||++++
T Consensus       120 ~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~  199 (240)
T 2onk_A          120 LDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAV  199 (240)
T ss_dssp             TTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEE
T ss_pred             hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            46889999999999999999999999999999999999999999888877654    67999999999999999999999


Q ss_pred             EeCCeEeEecCCHHHH
Q psy2684          78 LDMKKLFYYKGNFTLF   93 (356)
Q Consensus        78 l~~g~~~~~~g~~~~~   93 (356)
                      |++|+++. .|+.+..
T Consensus       200 l~~G~i~~-~g~~~~~  214 (240)
T 2onk_A          200 MLNGRIVE-KGKLKEL  214 (240)
T ss_dssp             EETTEEEE-EECHHHH
T ss_pred             EECCEEEE-ECCHHHH
Confidence            99999985 4665543

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.90  E-value=1.8e-23  Score=190.65  Aligned_cols=91  Identities=29%  Similarity=0.426  Sum_probs=82.3

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++++.+||||||||++||+||+.+|++|||||||++||+.++..+.++++++   +.|||+||||++++..+||+|++|
T Consensus       153 ~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l  232 (263)
T 2olj_A          153 AHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFM  232 (263)
T ss_dssp             TTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred             hcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEE
Confidence            47889999999999999999999999999999999999999999888887654   679999999999999999999999


Q ss_pred             eCCeEeEecCCHHHH
Q psy2684          79 DMKKLFYYKGNFTLF   93 (356)
Q Consensus        79 ~~g~~~~~~g~~~~~   93 (356)
                      ++|+++.. |+.+.+
T Consensus       233 ~~G~i~~~-g~~~~~  246 (263)
T 2olj_A          233 DGGYIIEE-GKPEDL  246 (263)
T ss_dssp             ETTEEEEE-ECHHHH
T ss_pred             ECCEEEEE-CCHHHH
Confidence            99999854 665543

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.90  E-value=1.6e-23  Score=188.24  Aligned_cols=83  Identities=31%  Similarity=0.389  Sum_probs=76.3

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      ++++.+||||||||++||+||+.+|++|||||||++||+.++..+.++++++    +.|||+||||++.+ .+||+|++|
T Consensus       140 ~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l  218 (235)
T 3tif_A          140 NHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYL  218 (235)
T ss_dssp             TCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEE
T ss_pred             hCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEE
Confidence            7889999999999999999999999999999999999999998888777654    78999999999965 789999999


Q ss_pred             eCCeEeEe
Q psy2684          79 DMKKLFYY   86 (356)
Q Consensus        79 ~~g~~~~~   86 (356)
                      ++|+++..
T Consensus       219 ~~G~i~~~  226 (235)
T 3tif_A          219 KDGEVERE  226 (235)
T ss_dssp             ETTEEEEE
T ss_pred             ECCEEEEE
Confidence            99999763

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.89  E-value=1.9e-23  Score=190.61  Aligned_cols=91  Identities=37%  Similarity=0.496  Sum_probs=82.1

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++++.+||||||||++||+||+.+|+||||||||++||+.++..+.++++++   +.|||+||||++++..+||+|++|
T Consensus       147 ~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l  226 (262)
T 1b0u_A          147 QGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFL  226 (262)
T ss_dssp             HTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEE
T ss_pred             hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            46889999999999999999999999999999999999999999888877654   679999999999999999999999


Q ss_pred             eCCeEeEecCCHHHH
Q psy2684          79 DMKKLFYYKGNFTLF   93 (356)
Q Consensus        79 ~~g~~~~~~g~~~~~   93 (356)
                      ++|+++.. |+.+++
T Consensus       227 ~~G~i~~~-g~~~~~  240 (262)
T 1b0u_A          227 HQGKIEEE-GDPEQV  240 (262)
T ss_dssp             ETTEEEEE-ECHHHH
T ss_pred             ECCEEEEe-CCHHHH
Confidence            99999864 665544

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.89  E-value=2.3e-23  Score=185.81  Aligned_cols=84  Identities=27%  Similarity=0.407  Sum_probs=77.4

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++++.+||||||||++||+||+.+|++|||||||++||+.++..+.++++++   +.|||+||||.+++ .+||+|++|
T Consensus       134 ~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l  212 (224)
T 2pcj_A          134 LSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEM  212 (224)
T ss_dssp             TTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEE
T ss_pred             hhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEE
Confidence            46889999999999999999999999999999999999999999888877654   67999999999998 789999999


Q ss_pred             eCCeEeEe
Q psy2684          79 DMKKLFYY   86 (356)
Q Consensus        79 ~~g~~~~~   86 (356)
                      ++|+++..
T Consensus       213 ~~G~i~~~  220 (224)
T 2pcj_A          213 KDGKVVGE  220 (224)
T ss_dssp             ETTEEEEE
T ss_pred             ECCEEEEE
Confidence            99999753

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.89  E-value=3.1e-23  Score=186.97  Aligned_cols=91  Identities=22%  Similarity=0.261  Sum_probs=81.9

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++++.+||||||||++||+||+.+|++|||||||++||+.++..+.++++++   +.|||+||||++++..+||+|++|
T Consensus       133 ~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l  212 (240)
T 1ji0_A          133 LKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVL  212 (240)
T ss_dssp             TTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEE
T ss_pred             hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence            47889999999999999999999999999999999999999999988887764   579999999999999999999999


Q ss_pred             eCCeEeEecCCHHHH
Q psy2684          79 DMKKLFYYKGNFTLF   93 (356)
Q Consensus        79 ~~g~~~~~~g~~~~~   93 (356)
                      ++|+++. .|+.+.+
T Consensus       213 ~~G~i~~-~g~~~~~  226 (240)
T 1ji0_A          213 ETGQIVL-EGKASEL  226 (240)
T ss_dssp             ETTEEEE-EEEHHHH
T ss_pred             ECCEEEE-EcCHHHH
Confidence            9999975 4655443

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.89  E-value=1.6e-23  Score=190.66  Aligned_cols=90  Identities=20%  Similarity=0.259  Sum_probs=81.5

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++++.+||||||||++||+||+.+|++|||||||++||+.++..+.++++++   +.|||+||||++++..+||+|++|
T Consensus       147 ~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l  226 (257)
T 1g6h_A          147 YDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVM  226 (257)
T ss_dssp             TTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEE
T ss_pred             hCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence            46889999999999999999999999999999999999999999888887764   689999999999999999999999


Q ss_pred             eCCeEeEecCCHHH
Q psy2684          79 DMKKLFYYKGNFTL   92 (356)
Q Consensus        79 ~~g~~~~~~g~~~~   92 (356)
                      ++|+++.. |+.+.
T Consensus       227 ~~G~i~~~-g~~~~  239 (257)
T 1g6h_A          227 FNGQIIAE-GRGEE  239 (257)
T ss_dssp             ETTEEEEE-EESHH
T ss_pred             ECCEEEEE-eCHHH
Confidence            99999864 54443

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.89  E-value=3e-23  Score=196.27  Aligned_cols=89  Identities=29%  Similarity=0.361  Sum_probs=79.5

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH----HHHhcCcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDN----YLQTWKKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~----~l~~~~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||||||+||+||+.+|++|||||||++||+..+..+.+    ++++.+.|||+||||++++..+||||++
T Consensus       132 ~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~v  211 (359)
T 3fvq_A          132 AGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAV  211 (359)
T ss_dssp             TTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEE
T ss_pred             hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEE
Confidence            578999999999999999999999999999999999999998776654    3445688999999999999999999999


Q ss_pred             EeCCeEeEecCCHH
Q psy2684          78 LDMKKLFYYKGNFT   91 (356)
Q Consensus        78 l~~g~~~~~~g~~~   91 (356)
                      |++|+++.. |+.+
T Consensus       212 l~~G~i~~~-g~~~  224 (359)
T 3fvq_A          212 MKQGRILQT-ASPH  224 (359)
T ss_dssp             EETTEEEEE-ECHH
T ss_pred             EECCEEEEE-eCHH
Confidence            999999865 5543

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.89  E-value=2.7e-23  Score=188.66  Aligned_cols=89  Identities=28%  Similarity=0.361  Sum_probs=80.6

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+||||||||++||+||+.+|++|||||||++||+.++.++.++++++    +.|||+||||++++..+||++++
T Consensus       122 ~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~  201 (253)
T 2nq2_C          122 AKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLL  201 (253)
T ss_dssp             TTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEE
T ss_pred             hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEE
Confidence            46789999999999999999999999999999999999999999988888765    67999999999999999999999


Q ss_pred             EeCCeEeEecCCHHH
Q psy2684          78 LDMKKLFYYKGNFTL   92 (356)
Q Consensus        78 l~~g~~~~~~g~~~~   92 (356)
                      |++|+ + +.|+.+.
T Consensus       202 l~~G~-~-~~g~~~~  214 (253)
T 2nq2_C          202 LNKQN-F-KFGETRN  214 (253)
T ss_dssp             EETTE-E-EEEEHHH
T ss_pred             EeCCe-E-ecCCHHH
Confidence            99999 5 4566544

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.89  E-value=2.9e-23  Score=197.66  Aligned_cols=87  Identities=30%  Similarity=0.469  Sum_probs=79.4

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||||||+||+||+.+|+||||||||++||+..+..+.+.|++    .+.|||+||||++++..+||||++
T Consensus       127 ~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~v  206 (381)
T 3rlf_A          127 LDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVV  206 (381)
T ss_dssp             TTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEE
T ss_pred             hcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEE
Confidence            5789999999999999999999999999999999999999998877666654    478999999999999999999999


Q ss_pred             EeCCeEeEecC
Q psy2684          78 LDMKKLFYYKG   88 (356)
Q Consensus        78 l~~g~~~~~~g   88 (356)
                      |++|+++..+.
T Consensus       207 l~~G~i~~~g~  217 (381)
T 3rlf_A          207 LDAGRVAQVGK  217 (381)
T ss_dssp             EETTEEEEEEC
T ss_pred             EECCEEEEEeC
Confidence            99999987543

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.89  E-value=2.4e-23  Score=190.29  Aligned_cols=90  Identities=31%  Similarity=0.352  Sum_probs=81.1

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHcc------CCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhh
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFL------EPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNI   71 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~------~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~   71 (356)
                      .++++.+||||||||++||+||+.      +|++|||||||++||+.++..+.++++++    +.|||+||||++++..+
T Consensus       135 ~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~  214 (266)
T 4g1u_C          135 AQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALY  214 (266)
T ss_dssp             TTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHH
T ss_pred             hcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHh
Confidence            478899999999999999999999      99999999999999999998888877654    35999999999999999


Q ss_pred             cCEEEEEeCCeEeEecCCHHH
Q psy2684          72 CTDIIHLDMKKLFYYKGNFTL   92 (356)
Q Consensus        72 ~~~i~~l~~g~~~~~~g~~~~   92 (356)
                      ||+|++|++|+++.. |+.++
T Consensus       215 ~d~v~vl~~G~i~~~-g~~~~  234 (266)
T 4g1u_C          215 ADRIMLLAQGKLVAC-GTPEE  234 (266)
T ss_dssp             CSEEEEEETTEEEEE-ECHHH
T ss_pred             CCEEEEEECCEEEEE-cCHHH
Confidence            999999999999864 55543

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.89  E-value=4.9e-23  Score=194.85  Aligned_cols=89  Identities=29%  Similarity=0.403  Sum_probs=80.6

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||||||+||+||+.+|++|||||||++||+..+..+.++|++    .+.|||+||||.+++..+||+|++
T Consensus       139 ~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~v  218 (355)
T 1z47_A          139 ANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLV  218 (355)
T ss_dssp             TTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEE
T ss_pred             hcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEE
Confidence            5789999999999999999999999999999999999999998887776654    478999999999999999999999


Q ss_pred             EeCCeEeEecCCHH
Q psy2684          78 LDMKKLFYYKGNFT   91 (356)
Q Consensus        78 l~~g~~~~~~g~~~   91 (356)
                      |++|++... |+.+
T Consensus       219 l~~G~i~~~-g~~~  231 (355)
T 1z47_A          219 LHEGNVEQF-GTPE  231 (355)
T ss_dssp             EETTEEEEE-ECHH
T ss_pred             EECCEEEEE-cCHH
Confidence            999999864 5544

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.89  E-value=6.5e-23  Score=194.44  Aligned_cols=89  Identities=33%  Similarity=0.484  Sum_probs=80.6

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||||||+||+||+.+|++|||||||++||+..+..+.+.|++    .+.|||+||||.+++..+||+|++
T Consensus       127 ~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~v  206 (359)
T 2yyz_A          127 LDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAV  206 (359)
T ss_dssp             TTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEE
T ss_pred             hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEE
Confidence            5789999999999999999999999999999999999999998887776654    378999999999999999999999


Q ss_pred             EeCCeEeEecCCHH
Q psy2684          78 LDMKKLFYYKGNFT   91 (356)
Q Consensus        78 l~~g~~~~~~g~~~   91 (356)
                      |++|++... |+.+
T Consensus       207 l~~G~i~~~-g~~~  219 (359)
T 2yyz_A          207 FNQGKLVQY-GTPD  219 (359)
T ss_dssp             EETTEEEEE-ECHH
T ss_pred             EECCEEEEe-CCHH
Confidence            999999865 5543

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.89  E-value=5.1e-23  Score=194.49  Aligned_cols=89  Identities=34%  Similarity=0.394  Sum_probs=80.6

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||||||+||+||+.+|++|||||||++||+..+..+.++|++    .+.|||+||||.+++..+||+|++
T Consensus       121 ~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~v  200 (348)
T 3d31_A          121 LDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAV  200 (348)
T ss_dssp             TTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEE
T ss_pred             hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            5789999999999999999999999999999999999999998887777654    478999999999999999999999


Q ss_pred             EeCCeEeEecCCHH
Q psy2684          78 LDMKKLFYYKGNFT   91 (356)
Q Consensus        78 l~~g~~~~~~g~~~   91 (356)
                      |++|++... |+.+
T Consensus       201 l~~G~i~~~-g~~~  213 (348)
T 3d31_A          201 VMDGKLIQV-GKPE  213 (348)
T ss_dssp             ESSSCEEEE-ECHH
T ss_pred             EECCEEEEE-CCHH
Confidence            999999865 5543

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.89  E-value=6.4e-23  Score=186.38  Aligned_cols=91  Identities=26%  Similarity=0.376  Sum_probs=82.0

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++++.+||||||||++||+||+.+|++|||||||++||+.++..+.++|+++   +.|||+||||++++..+||++++|
T Consensus       140 ~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l  219 (256)
T 1vpl_A          140 IKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALI  219 (256)
T ss_dssp             GGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEE
T ss_pred             hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEE
Confidence            46789999999999999999999999999999999999999999888887654   679999999999999999999999


Q ss_pred             eCCeEeEecCCHHHH
Q psy2684          79 DMKKLFYYKGNFTLF   93 (356)
Q Consensus        79 ~~g~~~~~~g~~~~~   93 (356)
                      ++|+++. .|+.+..
T Consensus       220 ~~G~i~~-~g~~~~~  233 (256)
T 1vpl_A          220 HNGTIVE-TGTVEEL  233 (256)
T ss_dssp             ETTEEEE-EEEHHHH
T ss_pred             ECCEEEE-ecCHHHH
Confidence            9999975 4665543

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.88  E-value=6.7e-23  Score=186.92  Aligned_cols=88  Identities=22%  Similarity=0.253  Sum_probs=81.9

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcC-EEEEEeC
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICT-DIIHLDM   80 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~-~i~~l~~   80 (356)
                      .++++.+||||||||++||+||+.+|++|||||||++||+.++.++.++|+++..|||+||||++++..+|| ++++|++
T Consensus       122 ~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~  201 (263)
T 2pjz_A          122 LRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVG  201 (263)
T ss_dssp             GGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEET
T ss_pred             hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEEC
Confidence            468899999999999999999999999999999999999999999999999886699999999999999999 9999999


Q ss_pred             CeEeEecCCH
Q psy2684          81 KKLFYYKGNF   90 (356)
Q Consensus        81 g~~~~~~g~~   90 (356)
                      |+++.. |+.
T Consensus       202 G~i~~~-g~~  210 (263)
T 2pjz_A          202 NRLQGP-ISV  210 (263)
T ss_dssp             TEEEEE-EEH
T ss_pred             CEEEEe-cCH
Confidence            999753 543

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.88  E-value=5.7e-23  Score=195.04  Aligned_cols=89  Identities=30%  Similarity=0.377  Sum_probs=80.6

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||||||+||+||+.+|++|||||||++||+..+..+.+.|++    .+.|||+||||.+++..+||+|++
T Consensus       127 ~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~v  206 (362)
T 2it1_A          127 LNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAV  206 (362)
T ss_dssp             TTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEE
T ss_pred             hhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEE
Confidence            5789999999999999999999999999999999999999998887776654    378999999999999999999999


Q ss_pred             EeCCeEeEecCCHH
Q psy2684          78 LDMKKLFYYKGNFT   91 (356)
Q Consensus        78 l~~g~~~~~~g~~~   91 (356)
                      |++|+++.. |+.+
T Consensus       207 l~~G~i~~~-g~~~  219 (362)
T 2it1_A          207 IREGEILQV-GTPD  219 (362)
T ss_dssp             EETTEEEEE-ECHH
T ss_pred             EECCEEEEE-cCHH
Confidence            999999865 5443

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.88  E-value=5.3e-23  Score=195.00  Aligned_cols=89  Identities=37%  Similarity=0.410  Sum_probs=80.4

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||||||+||+||+.+|++|||||||++||+..+..+.+.|++    .+.|||+||||.+++..+||+|++
T Consensus       134 ~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~v  213 (353)
T 1oxx_K          134 LNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGV  213 (353)
T ss_dssp             TTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEE
T ss_pred             hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            4788999999999999999999999999999999999999998887776654    478999999999999999999999


Q ss_pred             EeCCeEeEecCCHH
Q psy2684          78 LDMKKLFYYKGNFT   91 (356)
Q Consensus        78 l~~g~~~~~~g~~~   91 (356)
                      |++|+++.. |+.+
T Consensus       214 l~~G~i~~~-g~~~  226 (353)
T 1oxx_K          214 LVKGKLVQV-GKPE  226 (353)
T ss_dssp             EETTEEEEE-ECHH
T ss_pred             EECCEEEEE-cCHH
Confidence            999999865 5543

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.88  E-value=8.4e-23  Score=194.81  Aligned_cols=89  Identities=29%  Similarity=0.411  Sum_probs=80.4

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||||||+||+||+.+|++|||||||++||+..+..+.+.|++    .+.|||+||||.+++..+||+|++
T Consensus       133 ~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~v  212 (372)
T 1g29_1          133 LNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAV  212 (372)
T ss_dssp             TTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEE
T ss_pred             hcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEE
Confidence            5789999999999999999999999999999999999999998887766654    478999999999999999999999


Q ss_pred             EeCCeEeEecCCHH
Q psy2684          78 LDMKKLFYYKGNFT   91 (356)
Q Consensus        78 l~~g~~~~~~g~~~   91 (356)
                      |++|+++.. |+.+
T Consensus       213 l~~G~i~~~-g~~~  225 (372)
T 1g29_1          213 MNRGVLQQV-GSPD  225 (372)
T ss_dssp             EETTEEEEE-ECHH
T ss_pred             EeCCEEEEe-CCHH
Confidence            999999865 5543

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.88  E-value=8.4e-23  Score=186.85  Aligned_cols=90  Identities=29%  Similarity=0.446  Sum_probs=81.3

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++++.+||||||||++||++|+.+|++|||||||++||+.++..+.++++++   +.|||+||||++++..+||++++|
T Consensus       132 ~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l  211 (266)
T 2yz2_A          132 KDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVL  211 (266)
T ss_dssp             TTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEE
T ss_pred             ccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            46889999999999999999999999999999999999999999888887754   679999999999999999999999


Q ss_pred             eCCeEeEecCCHHH
Q psy2684          79 DMKKLFYYKGNFTL   92 (356)
Q Consensus        79 ~~g~~~~~~g~~~~   92 (356)
                      ++|+++. .|+.+.
T Consensus       212 ~~G~i~~-~g~~~~  224 (266)
T 2yz2_A          212 EKGKKVF-DGTRME  224 (266)
T ss_dssp             ETTEEEE-EEEHHH
T ss_pred             ECCEEEE-eCCHHH
Confidence            9999975 455543

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.88  E-value=5.7e-23  Score=189.01  Aligned_cols=90  Identities=29%  Similarity=0.311  Sum_probs=81.7

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEE--EEEecChhHHhhhcCEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTL--LVVSHDQSFLNNICTDII   76 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tv--i~vsHd~~~l~~~~~~i~   76 (356)
                      .++++.+||||||||++||+||+.+|++|||||||++||+.++.++.++|+++   +.||  |+||||++++..+||+|+
T Consensus       155 ~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~  234 (279)
T 2ihy_A          155 AQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKIL  234 (279)
T ss_dssp             TTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEE
T ss_pred             hcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEE
Confidence            46889999999999999999999999999999999999999999988888765   6799  999999999999999999


Q ss_pred             EEeCCeEeEecCCHHH
Q psy2684          77 HLDMKKLFYYKGNFTL   92 (356)
Q Consensus        77 ~l~~g~~~~~~g~~~~   92 (356)
                      +|++|+++. .|+.+.
T Consensus       235 ~l~~G~i~~-~g~~~~  249 (279)
T 2ihy_A          235 LLKDGQSIQ-QGAVED  249 (279)
T ss_dssp             EEETTEEEE-EEEHHH
T ss_pred             EEECCEEEE-ECCHHH
Confidence            999999985 465544

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.88  E-value=8.7e-23  Score=194.42  Aligned_cols=89  Identities=31%  Similarity=0.459  Sum_probs=80.5

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||||||+||+||+.+|++|||||||++||+..+..+.+.|++    .+.|||+||||.+++..+||+|++
T Consensus       135 ~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~v  214 (372)
T 1v43_A          135 LNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAV  214 (372)
T ss_dssp             TTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEE
T ss_pred             hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence            5789999999999999999999999999999999999999998887776654    378999999999999999999999


Q ss_pred             EeCCeEeEecCCHH
Q psy2684          78 LDMKKLFYYKGNFT   91 (356)
Q Consensus        78 l~~g~~~~~~g~~~   91 (356)
                      |++|++... |+.+
T Consensus       215 l~~G~i~~~-g~~~  227 (372)
T 1v43_A          215 MNRGQLLQI-GSPT  227 (372)
T ss_dssp             EETTEEEEE-ECHH
T ss_pred             EECCEEEEe-CCHH
Confidence            999999865 5543

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.88  E-value=1.6e-22  Score=185.03  Aligned_cols=89  Identities=29%  Similarity=0.461  Sum_probs=80.0

Q ss_pred             CCCCCC-cCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhh-cCEEE
Q psy2684           2 QEKSTK-EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNI-CTDII   76 (356)
Q Consensus         2 ~~~~~~-~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~-~~~i~   76 (356)
                      .++++. +||||||||++||+||+.+|+||||||||++||+.++.++.++|+++   +.|||+||||++++..+ ||+|+
T Consensus       157 ~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~  236 (267)
T 2zu0_C          157 LTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVH  236 (267)
T ss_dssp             TTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEE
T ss_pred             hcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEE
Confidence            356776 59999999999999999999999999999999999999999999876   47999999999999886 99999


Q ss_pred             EEeCCeEeEecCCHH
Q psy2684          77 HLDMKKLFYYKGNFT   91 (356)
Q Consensus        77 ~l~~g~~~~~~g~~~   91 (356)
                      +|++|+++.. |+.+
T Consensus       237 ~l~~G~i~~~-g~~~  250 (267)
T 2zu0_C          237 VLYQGRIVKS-GDFT  250 (267)
T ss_dssp             EEETTEEEEE-ECTT
T ss_pred             EEECCEEEEE-cCHH
Confidence            9999999864 5543

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.88  E-value=7.5e-23  Score=185.54  Aligned_cols=89  Identities=28%  Similarity=0.350  Sum_probs=76.6

Q ss_pred             CCCCCCc-CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhh-cCEEE
Q psy2684           2 QEKSTKE-FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNI-CTDII   76 (356)
Q Consensus         2 ~~~~~~~-LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~-~~~i~   76 (356)
                      .++++.+ ||||||||++||+||+.+|++|||||||++||+.++..+.++|+++   +.|||+||||.+++..+ ||+|+
T Consensus       136 ~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~  215 (250)
T 2d2e_A          136 LSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVH  215 (250)
T ss_dssp             GGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEE
T ss_pred             hcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEE
Confidence            3678888 9999999999999999999999999999999999999999988875   57999999999999888 59999


Q ss_pred             EEeCCeEeEecCCHH
Q psy2684          77 HLDMKKLFYYKGNFT   91 (356)
Q Consensus        77 ~l~~g~~~~~~g~~~   91 (356)
                      +|++|+++.. |+.+
T Consensus       216 ~l~~G~i~~~-g~~~  229 (250)
T 2d2e_A          216 VMMDGRVVAT-GGPE  229 (250)
T ss_dssp             EEETTEEEEE-ESHH
T ss_pred             EEECCEEEEE-eCHH
Confidence            9999999864 5554

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.88  E-value=1.2e-22  Score=183.77  Aligned_cols=90  Identities=31%  Similarity=0.342  Sum_probs=81.6

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCC-------EEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhh
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPT-------LLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNI   71 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~-------~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~   71 (356)
                      .++++.+||||||||++||++|+.+|+       +|||||||++||+.++..+.++|+++   +.|||+||||++++..+
T Consensus       120 ~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~  199 (249)
T 2qi9_C          120 LGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRH  199 (249)
T ss_dssp             TTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             hcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence            467899999999999999999999999       99999999999999999988888765   67999999999999999


Q ss_pred             cCEEEEEeCCeEeEecCCHHH
Q psy2684          72 CTDIIHLDMKKLFYYKGNFTL   92 (356)
Q Consensus        72 ~~~i~~l~~g~~~~~~g~~~~   92 (356)
                      ||++++|++|+++. .|+.+.
T Consensus       200 ~d~v~~l~~G~i~~-~g~~~~  219 (249)
T 2qi9_C          200 AHRAWLLKGGKMLA-SGRREE  219 (249)
T ss_dssp             CSEEEEEETTEEEE-EEEHHH
T ss_pred             CCEEEEEECCEEEE-eCCHHH
Confidence            99999999999975 455543

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.88  E-value=2.6e-22  Score=183.95  Aligned_cols=90  Identities=28%  Similarity=0.436  Sum_probs=81.0

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+||||||||++||+||+.+|+||||||||++||+.++..+.++|+++    +.|||+||||++++.. ||+|++
T Consensus       150 ~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~  228 (271)
T 2ixe_A          150 VGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILF  228 (271)
T ss_dssp             CCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEE
T ss_pred             hcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEE
Confidence            35778999999999999999999999999999999999999999999999876    4699999999999875 999999


Q ss_pred             EeCCeEeEecCCHHHH
Q psy2684          78 LDMKKLFYYKGNFTLF   93 (356)
Q Consensus        78 l~~g~~~~~~g~~~~~   93 (356)
                      |++|+++. .|+.+.+
T Consensus       229 l~~G~i~~-~g~~~~l  243 (271)
T 2ixe_A          229 LKEGSVCE-QGTHLQL  243 (271)
T ss_dssp             EETTEEEE-EECHHHH
T ss_pred             EECCEEEE-ECCHHHH
Confidence            99999985 4666544

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.87  E-value=2.7e-22  Score=181.44  Aligned_cols=89  Identities=27%  Similarity=0.457  Sum_probs=79.4

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEeC
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLDM   80 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~   80 (356)
                      ++++.+||||||||++||+||+.+|++|||||||++||+.++..+.++|+++  +.|||+||||++++.. ||+|++|++
T Consensus       140 ~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~-~d~v~~l~~  218 (247)
T 2ff7_A          140 GEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKN-ADRIIVMEK  218 (247)
T ss_dssp             STTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTT-SSEEEEEET
T ss_pred             hCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEEC
Confidence            4567899999999999999999999999999999999999999988888765  6799999999999865 999999999


Q ss_pred             CeEeEecCCHHHH
Q psy2684          81 KKLFYYKGNFTLF   93 (356)
Q Consensus        81 g~~~~~~g~~~~~   93 (356)
                      |+++. .|+.++.
T Consensus       219 G~i~~-~g~~~~l  230 (247)
T 2ff7_A          219 GKIVE-QGKHKEL  230 (247)
T ss_dssp             TEEEE-EECHHHH
T ss_pred             CEEEE-ECCHHHH
Confidence            99986 4665443

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.87  E-value=4e-23  Score=225.69  Aligned_cols=142  Identities=27%  Similarity=0.331  Sum_probs=112.5

Q ss_pred             cEEEecceeeeCC--CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684         179 VLGLHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG  256 (356)
Q Consensus       179 ~l~~~~l~~~~~~--~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG  256 (356)
                      -++++|++|.|++  +.++|+|+||+|++|+.++|+||||||||||+++|.|+++|++|+|.++|+++..-.        
T Consensus       415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~--------  486 (1321)
T 4f4c_A          415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDIN--------  486 (1321)
T ss_dssp             CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSC--------
T ss_pred             cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhcc--------
Confidence            4899999999964  457999999999999999999999999999999999999999999999998874110        


Q ss_pred             CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHhhcCCCCc---
Q psy2684         257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSY---  332 (356)
Q Consensus       257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~L~~~~l~~~---  332 (356)
                                              ....+.+|||++|++.  +| +.|+.||+.... ..+++++.+.++..++.++   
T Consensus       487 ------------------------~~~lr~~i~~v~Q~~~--Lf-~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~  539 (1321)
T 4f4c_A          487 ------------------------LEFLRKNVAVVSQEPA--LF-NCTIEENISLGKEGITREEMVAACKMANAEKFIKT  539 (1321)
T ss_dssp             ------------------------HHHHHHHEEEECSSCC--CC-SEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHH
T ss_pred             ------------------------HHHHhhcccccCCcce--ee-CCchhHHHhhhcccchHHHHHHHHHHccchhHHHc
Confidence                                    0011357999999983  44 669999986543 4567778877776664322   


Q ss_pred             --------cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         333 --------AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       333 --------~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                              ... .-..||||||||++|||+++
T Consensus       540 lp~G~~T~vGe-~G~~LSGGQkQRiaiARAl~  570 (1321)
T 4f4c_A          540 LPNGYNTLVGD-RGTQLSGGQKQRIAIARALV  570 (1321)
T ss_dssp             STTTTSSEESS-SSCCCCHHHHHHHHHHHHHT
T ss_pred             CCCCCccEecC-CCCCCCHHHHHHHHHHHHHc
Confidence                    111 23589999999999999974

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.87  E-value=6.2e-23  Score=223.68  Aligned_cols=142  Identities=26%  Similarity=0.339  Sum_probs=109.3

Q ss_pred             cEEEecceeeeCCC--ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684         179 VLGLHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG  256 (356)
Q Consensus       179 ~l~~~~l~~~~~~~--~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG  256 (356)
                      -++++|++|.|++.  .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++....        
T Consensus       387 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~--------  458 (1284)
T 3g5u_A          387 NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTIN--------  458 (1284)
T ss_dssp             CEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSC--------
T ss_pred             eEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCC--------
Confidence            58999999999642  46999999999999999999999999999999999999999999999998874110        


Q ss_pred             CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHhhcCCC-----
Q psy2684         257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLP-----  330 (356)
Q Consensus       257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~L~~~~l~-----  330 (356)
                                              ....+.+|||++|++  .+++. |+.|++.... ....+++++.++..++.     
T Consensus       459 ------------------------~~~~r~~i~~v~Q~~--~l~~~-ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~  511 (1284)
T 3g5u_A          459 ------------------------VRYLREIIGVVSQEP--VLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMK  511 (1284)
T ss_dssp             ------------------------HHHHHHHEEEECSSC--CCCSS-CHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHH
T ss_pred             ------------------------HHHHHhheEEEcCCC--ccCCc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHh
Confidence                                    001134699999997  36654 9999986543 34555665555444332     


Q ss_pred             ------CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         331 ------SYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       331 ------~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                            ..... ...+|||||||||+|||+++
T Consensus       512 l~~g~~t~~~~-~g~~LSgGq~QriaiARal~  542 (1284)
T 3g5u_A          512 LPHQFDTLVGE-RGAQLSGGQKQRIAIARALV  542 (1284)
T ss_dssp             STTGGGCCCSS-SSCSSCHHHHHHHHHHHHHH
T ss_pred             ccccccccccC-CCCccCHHHHHHHHHHHHHh
Confidence                  22222 34689999999999999973

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.87  E-value=6.1e-22  Score=184.05  Aligned_cols=90  Identities=27%  Similarity=0.364  Sum_probs=80.2

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEeC
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLDM   80 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~   80 (356)
                      ++...+||||||||++|||||+.+|+||||||||++||+.+...+.+.|+++  +.|||+||||++.+.. ||+|++|++
T Consensus       185 ~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~~  263 (306)
T 3nh6_A          185 GERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVIKD  263 (306)
T ss_dssp             STTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEET
T ss_pred             cCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEEC
Confidence            3556799999999999999999999999999999999999998888888764  6799999999999987 999999999


Q ss_pred             CeEeEecCCHHHHH
Q psy2684          81 KKLFYYKGNFTLFK   94 (356)
Q Consensus        81 g~~~~~~g~~~~~~   94 (356)
                      |+++.. |++++..
T Consensus       264 G~iv~~-G~~~el~  276 (306)
T 3nh6_A          264 GCIVER-GRHEALL  276 (306)
T ss_dssp             TEEEEE-ECHHHHH
T ss_pred             CEEEEE-CCHHHHH
Confidence            999864 7766543

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.87  E-value=8.9e-22  Score=179.41  Aligned_cols=89  Identities=27%  Similarity=0.477  Sum_probs=79.5

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEeC
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLDM   80 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~   80 (356)
                      ++.+.+||||||||++||+||+.+|+||||||||++||+.++..+.++++++  +.|||+||||.+++. .||+|++|++
T Consensus       150 ~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~-~~d~i~~l~~  228 (260)
T 2ghi_A          150 GNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS-SAESIILLNK  228 (260)
T ss_dssp             SSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST-TCSEEEEEET
T ss_pred             cCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-hCCEEEEEEC
Confidence            3567899999999999999999999999999999999999999988888765  579999999999986 4999999999


Q ss_pred             CeEeEecCCHHHH
Q psy2684          81 KKLFYYKGNFTLF   93 (356)
Q Consensus        81 g~~~~~~g~~~~~   93 (356)
                      |+++. .|+.+..
T Consensus       229 G~i~~-~g~~~~l  240 (260)
T 2ghi_A          229 GKIVE-KGTHKDL  240 (260)
T ss_dssp             TEEEE-EECHHHH
T ss_pred             CEEEE-ECCHHHH
Confidence            99985 4666554

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.86  E-value=3.5e-22  Score=180.41  Aligned_cols=89  Identities=27%  Similarity=0.406  Sum_probs=78.2

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEeC
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLDM   80 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~   80 (356)
                      ++++.+||||||||++||+||+.+|++|||||||++||+.++..+.+.++++  +.|||+||||.+++. .||+|++|++
T Consensus       134 ~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~  212 (243)
T 1mv5_A          134 GERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEK  212 (243)
T ss_dssp             STTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEET
T ss_pred             ccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH-hCCEEEEEEC
Confidence            3567899999999999999999999999999999999999988877777654  689999999999886 5999999999


Q ss_pred             CeEeEecCCHHHH
Q psy2684          81 KKLFYYKGNFTLF   93 (356)
Q Consensus        81 g~~~~~~g~~~~~   93 (356)
                      |+++. .|+.+.+
T Consensus       213 G~i~~-~g~~~~~  224 (243)
T 1mv5_A          213 GQITG-SGKHNEL  224 (243)
T ss_dssp             TEECC-CSCHHHH
T ss_pred             CEEEE-eCCHHHH
Confidence            99975 5766544

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.86  E-value=1.3e-21  Score=175.07  Aligned_cols=88  Identities=28%  Similarity=0.411  Sum_probs=77.1

Q ss_pred             CCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH-HHhc--CcEEEEEecChhHHhhhcCEEEEEeC
Q psy2684           4 KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNY-LQTW--KKTLLVVSHDQSFLNNICTDIIHLDM   80 (356)
Q Consensus         4 ~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~-l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~   80 (356)
                      +++.+||||||||++||+||+.+|++|||||||++||+.++..+.+. ++++  +.|||+||||.+++. .||++++|++
T Consensus       126 ~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~  204 (229)
T 2pze_A          126 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHE  204 (229)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEEET
T ss_pred             CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEEEC
Confidence            45689999999999999999999999999999999999999999886 4443  579999999999986 4999999999


Q ss_pred             CeEeEecCCHHHH
Q psy2684          81 KKLFYYKGNFTLF   93 (356)
Q Consensus        81 g~~~~~~g~~~~~   93 (356)
                      |+++. .|+++..
T Consensus       205 G~i~~-~g~~~~~  216 (229)
T 2pze_A          205 GSSYF-YGTFSEL  216 (229)
T ss_dssp             TEEEE-EECHHHH
T ss_pred             CEEEE-ECCHHHH
Confidence            99985 4665543

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.86  E-value=1e-21  Score=176.56  Aligned_cols=89  Identities=27%  Similarity=0.378  Sum_probs=78.9

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH---h--cCcEEEEEecChhHHhhhcCEEEE
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQ---T--WKKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~---~--~~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      ++++.+||||||||++||+||+.+|++|||||||++||+.++..+.+.+.   +  .+.|||+||||.+++. .||+|++
T Consensus       122 ~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~v~~  200 (237)
T 2cbz_A          122 GEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDVIIV  200 (237)
T ss_dssp             STTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSEEEE
T ss_pred             cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCEEEE
Confidence            57789999999999999999999999999999999999999999988883   2  2579999999999985 6999999


Q ss_pred             EeCCeEeEecCCHHHH
Q psy2684          78 LDMKKLFYYKGNFTLF   93 (356)
Q Consensus        78 l~~g~~~~~~g~~~~~   93 (356)
                      |++|+++. .|+.+..
T Consensus       201 l~~G~i~~-~g~~~~~  215 (237)
T 2cbz_A          201 MSGGKISE-MGSYQEL  215 (237)
T ss_dssp             EETTEEEE-EECHHHH
T ss_pred             EeCCEEEE-eCCHHHH
Confidence            99999985 4666544

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=99.84  E-value=1.1e-20  Score=157.21  Aligned_cols=80  Identities=33%  Similarity=0.411  Sum_probs=70.9

Q ss_pred             CCCCCcCCHHHHHHHHHH------HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcC
Q psy2684           3 EKSTKEFSGGWRIRVSLA------RALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICT   73 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la------~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~   73 (356)
                      ++++.+||||||||++||      ++|+.+|++|||||||++||+.++.++.+.+.++   +.|||+||||.+ +..+||
T Consensus        52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~d  130 (148)
T 1f2t_B           52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAAD  130 (148)
T ss_dssp             EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGCS
T ss_pred             cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhCC
Confidence            578899999999999876      8999999999999999999999999999998876   469999999995 567899


Q ss_pred             EEEEEe--CCeE
Q psy2684          74 DIIHLD--MKKL   83 (356)
Q Consensus        74 ~i~~l~--~g~~   83 (356)
                      ++++|+  +|..
T Consensus       131 ~ii~l~~~~g~s  142 (148)
T 1f2t_B          131 HVIRISLENGSS  142 (148)
T ss_dssp             EEEEEEEETTEE
T ss_pred             EEEEEEcCCCeE
Confidence            999994  5543

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.84  E-value=5.7e-21  Score=192.90  Aligned_cols=89  Identities=25%  Similarity=0.297  Sum_probs=79.1

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||||||+||++|+.+|+||||||||++||+.++..+.++|++    .+.|||+||||++++..+||||++
T Consensus       461 ~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrviv  540 (608)
T 3j16_B          461 IDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIV  540 (608)
T ss_dssp             SSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEE
T ss_pred             hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence            5789999999999999999999999999999999999999998877776654    478999999999999999999999


Q ss_pred             EeC--CeEeEecCCHH
Q psy2684          78 LDM--KKLFYYKGNFT   91 (356)
Q Consensus        78 l~~--g~~~~~~g~~~   91 (356)
                      |++  |++... |+.+
T Consensus       541 l~~~~g~~~~~-g~p~  555 (608)
T 3j16_B          541 FEGIPSKNAHA-RAPE  555 (608)
T ss_dssp             CEEETTTEEEC-CCCE
T ss_pred             EeCCCCeEEec-CChH
Confidence            996  777654 5443

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.83  E-value=5.7e-21  Score=190.70  Aligned_cols=79  Identities=25%  Similarity=0.385  Sum_probs=73.4

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||||||+||++|+.+|+||||||||++||+.++..+.++|++    .+.|||+||||++++..+||||++
T Consensus       379 ~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~v  458 (538)
T 3ozx_A          379 LESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIV  458 (538)
T ss_dssp             TTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEE
T ss_pred             hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence            5789999999999999999999999999999999999999998887777764    478999999999999999999999


Q ss_pred             EeC
Q psy2684          78 LDM   80 (356)
Q Consensus        78 l~~   80 (356)
                      |++
T Consensus       459 l~~  461 (538)
T 3ozx_A          459 FKG  461 (538)
T ss_dssp             EEE
T ss_pred             EeC
Confidence            986

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.83  E-value=1.6e-20  Score=173.48  Aligned_cols=88  Identities=28%  Similarity=0.399  Sum_probs=75.5

Q ss_pred             CCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH-Hhc--CcEEEEEecChhHHhhhcCEEEEEeC
Q psy2684           4 KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYL-QTW--KKTLLVVSHDQSFLNNICTDIIHLDM   80 (356)
Q Consensus         4 ~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l-~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~   80 (356)
                      +.+.+||||||||++||++|+.+|++|||||||++||+.++..+.+.+ +++  +.|||+||||.+++. .||++++|++
T Consensus       155 ~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~  233 (290)
T 2bbs_A          155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHE  233 (290)
T ss_dssp             ---CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEET
T ss_pred             CccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEEC
Confidence            346899999999999999999999999999999999999999998863 333  579999999999986 5999999999


Q ss_pred             CeEeEecCCHHHH
Q psy2684          81 KKLFYYKGNFTLF   93 (356)
Q Consensus        81 g~~~~~~g~~~~~   93 (356)
                      |+++. .|+.+..
T Consensus       234 G~i~~-~g~~~~l  245 (290)
T 2bbs_A          234 GSSYF-YGTFSEL  245 (290)
T ss_dssp             TEEEE-EECHHHH
T ss_pred             CeEEE-eCCHHHH
Confidence            99975 4666554

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.83  E-value=2.9e-21  Score=202.25  Aligned_cols=88  Identities=24%  Similarity=0.468  Sum_probs=80.4

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEEeCCe
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMKK   82 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l~~g~   82 (356)
                      ++++.+||||||||++||++|+.+|+|||||||||+||+.++.++.+.|+++++|||+||||++++..+||+|++|++|+
T Consensus       896 ~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~DrVivL~~G~  975 (986)
T 2iw3_A          896 HSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGR  975 (986)
T ss_dssp             HSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCCEEECCBTTB
T ss_pred             CCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeEecCCH
Q psy2684          83 LFYYKGNF   90 (356)
Q Consensus        83 ~~~~~g~~   90 (356)
                      ++..+.+|
T Consensus       976 Iv~~G~~~  983 (986)
T 2iw3_A          976 MTPSGHNW  983 (986)
T ss_dssp             CCC-----
T ss_pred             EEEeCCcc
Confidence            98655444

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.83  E-value=1.1e-20  Score=188.91  Aligned_cols=89  Identities=26%  Similarity=0.356  Sum_probs=78.8

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||||||+||++|+.+|+||||||||++||+.++..+.++|++    .++|||+||||++++..+||||++
T Consensus       395 ~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~v  474 (538)
T 1yqt_A          395 YDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMV  474 (538)
T ss_dssp             TTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEE
T ss_pred             hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence            4688999999999999999999999999999999999999999888887765    378999999999999999999999


Q ss_pred             EeC--CeEeEecCCHH
Q psy2684          78 LDM--KKLFYYKGNFT   91 (356)
Q Consensus        78 l~~--g~~~~~~g~~~   91 (356)
                      |++  |.+.. .|+.+
T Consensus       475 l~~~~~~~~~-~g~~~  489 (538)
T 1yqt_A          475 FEGEPGKYGR-ALPPM  489 (538)
T ss_dssp             EEEETTTEEE-ECCCE
T ss_pred             EeCCcceEee-cCCHH
Confidence            985  56554 35543

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.83  E-value=7.4e-21  Score=182.23  Aligned_cols=81  Identities=23%  Similarity=0.376  Sum_probs=73.5

Q ss_pred             CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEeCCeEeEe
Q psy2684           9 FSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLDMKKLFYY   86 (356)
Q Consensus         9 LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~g~~~~~   86 (356)
                      |||||||||+|||||+.+|+||||||||++||+..+..+.+.|++.  +.|||+||||.+.+. .||||++|++|+++.+
T Consensus       156 LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~-~aDri~vl~~G~i~~~  234 (390)
T 3gd7_A          156 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAML-ECDQFLVIEENKVRQY  234 (390)
T ss_dssp             SCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGT-TCSEEEEEETTEEEEE
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHH-hCCEEEEEECCEEEEE
Confidence            9999999999999999999999999999999999999999888875  579999999987665 5999999999999876


Q ss_pred             cCCHH
Q psy2684          87 KGNFT   91 (356)
Q Consensus        87 ~g~~~   91 (356)
                       |+.+
T Consensus       235 -g~~~  238 (390)
T 3gd7_A          235 -DSIL  238 (390)
T ss_dssp             -SSHH
T ss_pred             -CCHH
Confidence             5443

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.82  E-value=2.1e-20  Score=188.96  Aligned_cols=89  Identities=25%  Similarity=0.365  Sum_probs=78.9

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||||||+||++|+.+|+||||||||++||+.++..+.++|+++    +.|||+||||++++..+||||++
T Consensus       465 ~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~v  544 (607)
T 3bk7_A          465 YDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIV  544 (607)
T ss_dssp             TTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEE
T ss_pred             hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence            57889999999999999999999999999999999999999998888877754    78999999999999999999999


Q ss_pred             EeC--CeEeEecCCHH
Q psy2684          78 LDM--KKLFYYKGNFT   91 (356)
Q Consensus        78 l~~--g~~~~~~g~~~   91 (356)
                      |++  |.+.. .|+.+
T Consensus       545 l~~~~g~~~~-~g~p~  559 (607)
T 3bk7_A          545 FEGEPGRHGR-ALPPM  559 (607)
T ss_dssp             EEEETTTEEE-ECCCE
T ss_pred             EcCCcceEEe-cCCHH
Confidence            985  55554 35543

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.82  E-value=7.7e-20  Score=184.94  Aligned_cols=91  Identities=25%  Similarity=0.384  Sum_probs=81.0

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEeC
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLDM   80 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~   80 (356)
                      ++...+||||||||++|||||+.+|++|||||||++||+.+...+.+.++++  +.|+|+||||++.+. .||+|++|++
T Consensus       474 ~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~  552 (587)
T 3qf4_A          474 ERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKILVLHE  552 (587)
T ss_dssp             CSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEEEEEET
T ss_pred             cCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEEEEEEC
Confidence            4567899999999999999999999999999999999999999888888764  579999999999986 7999999999


Q ss_pred             CeEeEecCCHHHHHH
Q psy2684          81 KKLFYYKGNFTLFKK   95 (356)
Q Consensus        81 g~~~~~~g~~~~~~~   95 (356)
                      |+++.. |++++..+
T Consensus       553 G~i~~~-g~~~el~~  566 (587)
T 3qf4_A          553 GKVAGF-GTHKELLE  566 (587)
T ss_dssp             TEEEEE-ECHHHHHH
T ss_pred             CEEEEE-CCHHHHHh
Confidence            999874 77766543

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.81  E-value=3.6e-21  Score=170.17  Aligned_cols=76  Identities=20%  Similarity=0.282  Sum_probs=69.5

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      ++++.+||||||||++||++|+.+|++|||||||++||+.++..+.++++++   +.|||+||||.+++..+||+|+.+
T Consensus       128 ~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~  206 (214)
T 1sgw_A          128 KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKY  206 (214)
T ss_dssp             TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG
T ss_pred             CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe
Confidence            5788999999999999999999999999999999999999998888887765   579999999999999999988644

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.80  E-value=6.7e-20  Score=175.02  Aligned_cols=81  Identities=20%  Similarity=0.307  Sum_probs=74.7

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHc------cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcC
Q psy2684           3 EKSTKEFSGGWRIRVSLARALF------LEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICT   73 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~------~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~   73 (356)
                      ++++.+|||||+||++||++|+      .+|++|||||||++||+.++.++.++++++   +.|||+||||++++ ..||
T Consensus       274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~-~~~d  352 (365)
T 3qf7_A          274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFS-EAFD  352 (365)
T ss_dssp             EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHH-TTCS
T ss_pred             CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHH-HhCC
Confidence            4688999999999999999999      799999999999999999999999988875   57999999999984 6799


Q ss_pred             EEEEEeCCeEe
Q psy2684          74 DIIHLDMKKLF   84 (356)
Q Consensus        74 ~i~~l~~g~~~   84 (356)
                      ++++|++|+++
T Consensus       353 ~~~~l~~G~i~  363 (365)
T 3qf7_A          353 RKLRITGGVVV  363 (365)
T ss_dssp             CEEEEETTEEC
T ss_pred             EEEEEECCEEE
Confidence            99999999986

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.80  E-value=1.3e-19  Score=183.17  Aligned_cols=88  Identities=31%  Similarity=0.476  Sum_probs=79.0

Q ss_pred             CCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEeCC
Q psy2684           4 KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLDMK   81 (356)
Q Consensus         4 ~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~g   81 (356)
                      +...+||||||||++|||||+.+|++|||||||++||+.+...+.+.++++  +.|||+||||.+.+. .||+|++|++|
T Consensus       476 ~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G  554 (582)
T 3b5x_A          476 ENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEILVVDEG  554 (582)
T ss_pred             CCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECC
Confidence            456899999999999999999999999999999999999999888888765  579999999999986 69999999999


Q ss_pred             eEeEecCCHHHH
Q psy2684          82 KLFYYKGNFTLF   93 (356)
Q Consensus        82 ~~~~~~g~~~~~   93 (356)
                      +++. .|++++.
T Consensus       555 ~i~~-~g~~~~l  565 (582)
T 3b5x_A          555 EIIE-RGRHADL  565 (582)
T ss_pred             EEEE-ECCHHHH
Confidence            9986 4776554

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.80  E-value=1.1e-19  Score=183.64  Aligned_cols=89  Identities=27%  Similarity=0.453  Sum_probs=78.5

Q ss_pred             CCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEeCC
Q psy2684           4 KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLDMK   81 (356)
Q Consensus         4 ~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~g   81 (356)
                      +...+||||||||++|||||+.+|++|||||||++||+.+...+.+.++++  +.|+|+||||++.+.. ||+|++|++|
T Consensus       473 ~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G  551 (578)
T 4a82_A          473 ERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH-ADKIVVIENG  551 (578)
T ss_dssp             GGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT-CSEEEEEETT
T ss_pred             cCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECC
Confidence            345689999999999999999999999999999999999988888888764  5799999999999865 9999999999


Q ss_pred             eEeEecCCHHHHH
Q psy2684          82 KLFYYKGNFTLFK   94 (356)
Q Consensus        82 ~~~~~~g~~~~~~   94 (356)
                      +++. .|++++..
T Consensus       552 ~i~~-~g~~~el~  563 (578)
T 4a82_A          552 HIVE-TGTHRELI  563 (578)
T ss_dssp             EEEE-EECHHHHH
T ss_pred             EEEE-ECCHHHHH
Confidence            9986 47765543

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.80  E-value=2.5e-20  Score=186.29  Aligned_cols=162  Identities=11%  Similarity=0.049  Sum_probs=98.0

Q ss_pred             HHHHHHHHHc-cCCCEEEEeCCCCC-----CCHHHHHHHHHHHH---hcCcEEEEEecChhHH---------hhhcCEEE
Q psy2684          15 IRVSLARALF-LEPTLLLLDEPTNH-----LDLNAVIWLDNYLQ---TWKKTLLVVSHDQSFL---------NNICTDII   76 (356)
Q Consensus        15 ~r~~la~~l~-~~p~~llLDEPt~~-----LD~~~~~~l~~~l~---~~~~tvi~vsHd~~~l---------~~~~~~i~   76 (356)
                      ..-.+...|. .+|++++|||||+.     ||+..+..+.++++   +.+.|||+||||.+++         ..+||+|+
T Consensus       126 ~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi  205 (525)
T 1tf7_A          126 LIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVV  205 (525)
T ss_dssp             HHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEE
T ss_pred             HHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEE
Confidence            3445555553 68999999999985     58888777666554   4578999999999984         55699999


Q ss_pred             EEeCCeEeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccc-cCCCCchh
Q psy2684          77 HLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQK-DDDDEPKE  155 (356)
Q Consensus        77 ~l~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  155 (356)
                      +|++|.+   .|....+..                           ..                   +... ........
T Consensus       206 ~L~~~~~---~G~~~r~l~---------------------------~~-------------------k~r~~~~~~~~~~  236 (525)
T 1tf7_A          206 ILRNVLE---GERRRRTLE---------------------------IL-------------------KLRGTSHMKGEYP  236 (525)
T ss_dssp             EEEEECS---TTCCEEEEE---------------------------EE-------------------EETTSCCCCSEEE
T ss_pred             EEEEEcc---CCceeEEEE---------------------------EE-------------------ECCCCCCCCceEE
Confidence            9998432   121100000                           00                   0000 00000000


Q ss_pred             h-hcCCcceeeEEEecCCCCCCCCcEEEecceeeeCCCcccccc-ceeeecCCCeEEEEcCCCCCcchhhhhhccccccC
Q psy2684         156 L-LEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEK-VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN  233 (356)
Q Consensus       156 ~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~-~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~  233 (356)
                      . +..   .... .++.......+.+++++++..|++    |+. ++..|.+|++++|+|+||||||||+++++|...|.
T Consensus       237 ~~i~~---~gi~-v~p~~~~~~~~~~~~~~l~~g~~~----ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~  308 (525)
T 1tf7_A          237 FTITD---HGIN-IFPLGAMRLTQRSSNVRVSSGVVR----LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACAN  308 (525)
T ss_dssp             EEEET---TEEE-ECCTTTCCSCCCCCCCEECCSCHH----HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred             EEEcC---CCEE-EEeccccccccccccceeecChHH----HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence            0 000   0000 011111112345677888876631    333 25599999999999999999999999999998774

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.80  E-value=1.4e-19  Score=183.13  Aligned_cols=89  Identities=27%  Similarity=0.419  Sum_probs=79.1

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEeC
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLDM   80 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~   80 (356)
                      ++...+||||||||++|||||+.+|++|||||||++||+.+...+.+.++++  +.|+|+||||.+.+. .||+|++|++
T Consensus       475 ~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~  553 (582)
T 3b60_A          475 GENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVED  553 (582)
T ss_dssp             CTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEET
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEEC
Confidence            3456899999999999999999999999999999999999998888887764  689999999999986 5999999999


Q ss_pred             CeEeEecCCHHHH
Q psy2684          81 KKLFYYKGNFTLF   93 (356)
Q Consensus        81 g~~~~~~g~~~~~   93 (356)
                      |+++. .|++++.
T Consensus       554 G~i~~-~g~~~~l  565 (582)
T 3b60_A          554 GIIVE-RGTHSEL  565 (582)
T ss_dssp             TEEEE-EECHHHH
T ss_pred             CEEEE-ecCHHHH
Confidence            99986 4666554

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.80  E-value=1.6e-19  Score=183.09  Aligned_cols=86  Identities=23%  Similarity=0.360  Sum_probs=77.8

Q ss_pred             CcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEeCCeEe
Q psy2684           7 KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLDMKKLF   84 (356)
Q Consensus         7 ~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~g~~~   84 (356)
                      .+||||||||++|||||+.+|++|||||||++||+.+...+.+.+++.  +.|+|+||||++.+.. ||+|++|++|+++
T Consensus       490 ~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~  568 (598)
T 3qf4_B          490 EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVLRDGEIV  568 (598)
T ss_dssp             TTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEEEEECSSSEE
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEE
Confidence            689999999999999999999999999999999999998888877764  6899999999999976 9999999999998


Q ss_pred             EecCCHHHHH
Q psy2684          85 YYKGNFTLFK   94 (356)
Q Consensus        85 ~~~g~~~~~~   94 (356)
                      . .|++++..
T Consensus       569 ~-~g~~~~l~  577 (598)
T 3qf4_B          569 E-MGKHDELI  577 (598)
T ss_dssp             E-CSCHHHHH
T ss_pred             E-ECCHHHHH
Confidence            6 57776654

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.79  E-value=3.8e-19  Score=182.75  Aligned_cols=89  Identities=28%  Similarity=0.386  Sum_probs=78.0

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCC---EEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEE
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPT---LLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDII   76 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~---~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~   76 (356)
                      ++++.+|||||||||+||+||+.+|+   ||||||||++||+.++..+.++++++   +.|||+||||++++. .||||+
T Consensus       538 ~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~i~  616 (670)
T 3ux8_A          538 GQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIK-TADYII  616 (670)
T ss_dssp             TCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEE
T ss_pred             cCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH-hCCEEE
Confidence            67899999999999999999999875   99999999999999988887777654   689999999999885 699999


Q ss_pred             EE------eCCeEeEecCCHHHH
Q psy2684          77 HL------DMKKLFYYKGNFTLF   93 (356)
Q Consensus        77 ~l------~~g~~~~~~g~~~~~   93 (356)
                      +|      ++|+++. .|+.++.
T Consensus       617 ~l~~~~g~~~G~i~~-~g~~~~~  638 (670)
T 3ux8_A          617 DLGPEGGDRGGQIVA-VGTPEEV  638 (670)
T ss_dssp             EEESSSGGGCCEEEE-EECHHHH
T ss_pred             EecCCcCCCCCEEEE-ecCHHHH
Confidence            99      7899986 4666554

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.78  E-value=6.9e-19  Score=184.06  Aligned_cols=90  Identities=29%  Similarity=0.374  Sum_probs=79.0

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEP---TLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDI   75 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p---~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i   75 (356)
                      .++++.+|||||+|||+||++|+.+|   +||||||||++||+.++..|.+.|+++   +.|||+||||++++.. ||+|
T Consensus       799 lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~-ADrI  877 (916)
T 3pih_A          799 LGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKN-ADHI  877 (916)
T ss_dssp             TTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT-CSEE
T ss_pred             ccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEE
Confidence            35789999999999999999999876   699999999999999999888877654   7899999999999865 9999


Q ss_pred             EEE------eCCeEeEecCCHHHH
Q psy2684          76 IHL------DMKKLFYYKGNFTLF   93 (356)
Q Consensus        76 ~~l------~~g~~~~~~g~~~~~   93 (356)
                      ++|      ++|+++. .|+.++.
T Consensus       878 ivLgp~gg~~~G~Iv~-~Gtpeel  900 (916)
T 3pih_A          878 IDLGPEGGKEGGYIVA-TGTPEEI  900 (916)
T ss_dssp             EEEESSSGGGCCEEEE-EESHHHH
T ss_pred             EEecCCCCCCCCEEEE-EcCHHHH
Confidence            999      7899986 5666554

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.76  E-value=2.3e-18  Score=167.00  Aligned_cols=82  Identities=21%  Similarity=0.197  Sum_probs=74.0

Q ss_pred             CCCCcC-CHHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           4 KSTKEF-SGGWRIRVSLARALFLEP--TLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         4 ~~~~~L-SgGe~~r~~la~~l~~~p--~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      +++..+ ||||+||++||++|+.+|  ++|||||||++||+.++.+|.++|+++  ++|||+||||++++ ..||++++|
T Consensus       290 ~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~-~~~d~i~~l  368 (415)
T 4aby_A          290 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIA-ARAHHHYKV  368 (415)
T ss_dssp             CBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEEEE
T ss_pred             cchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH-hhcCeEEEE
Confidence            444454 999999999999999999  999999999999999999999999987  48999999999887 579999999


Q ss_pred             ----eCCeEeEe
Q psy2684          79 ----DMKKLFYY   86 (356)
Q Consensus        79 ----~~g~~~~~   86 (356)
                          ++|+++..
T Consensus       369 ~k~~~~G~~~~~  380 (415)
T 4aby_A          369 EKQVEDGRTVSH  380 (415)
T ss_dssp             EEEEETTEEEEE
T ss_pred             EEeccCCceEEE
Confidence                89988653

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.75  E-value=1.6e-18  Score=179.99  Aligned_cols=91  Identities=26%  Similarity=0.311  Sum_probs=79.7

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEecChhHHhhhcCEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLE---PTLLLLDEPTNHLDLNAVIWLDNYLQT---WKKTLLVVSHDQSFLNNICTDI   75 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~---p~~llLDEPt~~LD~~~~~~l~~~l~~---~~~tvi~vsHd~~~l~~~~~~i   75 (356)
                      .++++.+|||||+||++||++|+.+   |+||||||||++||+.++..|.++|++   .+.|||+||||++++ ..||+|
T Consensus       724 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i-~~aDri  802 (842)
T 2vf7_A          724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV-AASDWV  802 (842)
T ss_dssp             TTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEE
T ss_pred             ccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEE
Confidence            3688999999999999999999996   799999999999999999888777664   478999999999999 689999


Q ss_pred             EEE------eCCeEeEecCCHHHHH
Q psy2684          76 IHL------DMKKLFYYKGNFTLFK   94 (356)
Q Consensus        76 ~~l------~~g~~~~~~g~~~~~~   94 (356)
                      ++|      ++|+++. .|+++++.
T Consensus       803 i~L~p~~g~~~G~Iv~-~g~~~el~  826 (842)
T 2vf7_A          803 LDIGPGAGEDGGRLVA-QGTPAEVA  826 (842)
T ss_dssp             EEECSSSGGGCCSEEE-EECHHHHT
T ss_pred             EEECCCCCCCCCEEEE-EcCHHHHH
Confidence            999      6888875 57766543

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=99.74  E-value=7.6e-18  Score=143.72  Aligned_cols=93  Identities=18%  Similarity=0.202  Sum_probs=78.4

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEE
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFL----EPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDII   76 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~----~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~   76 (356)
                      .+++..||||||||++||++|+.    +|+++||||||++||+.++..+.++++++  +.++|+|||+...+ ..||+++
T Consensus        59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~-~~ad~i~  137 (173)
T 3kta_B           59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM-ANADKII  137 (173)
T ss_dssp             CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEE
T ss_pred             ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH-HhCCEEE
Confidence            46789999999999999999984    46999999999999999999999999875  36899999997665 6799998


Q ss_pred             EE--eCCeEeEecCCHHHHHHH
Q psy2684          77 HL--DMKKLFYYKGNFTLFKKM   96 (356)
Q Consensus        77 ~l--~~g~~~~~~g~~~~~~~~   96 (356)
                      .+  ++|....+..+++.+.+.
T Consensus       138 ~v~~~~g~s~~~~~~~~~~~~~  159 (173)
T 3kta_B          138 GVSMRDGVSKVVSLSLEKAMKI  159 (173)
T ss_dssp             EEEEETTEEEEEECCHHHHHHH
T ss_pred             EEEecCCEEEEEEEEcHHHHHH
Confidence            65  578777777777766543

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.74  E-value=5.5e-18  Score=176.45  Aligned_cols=91  Identities=29%  Similarity=0.367  Sum_probs=79.0

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEecChhHHhhhcCEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEP---TLLLLDEPTNHLDLNAVIWLDNYLQT---WKKTLLVVSHDQSFLNNICTDI   75 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p---~~llLDEPt~~LD~~~~~~l~~~l~~---~~~tvi~vsHd~~~l~~~~~~i   75 (356)
                      .++++.+|||||+||++||++|+.+|   +||||||||++||+.++..|.++|++   .+.|||+||||++++ ..||+|
T Consensus       839 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i-~~aDrI  917 (972)
T 2r6f_A          839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI-KTADYI  917 (972)
T ss_dssp             TTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEE
T ss_pred             ccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEE
Confidence            36789999999999999999999875   99999999999999999888877765   478999999999998 479999


Q ss_pred             EEE------eCCeEeEecCCHHHHH
Q psy2684          76 IHL------DMKKLFYYKGNFTLFK   94 (356)
Q Consensus        76 ~~l------~~g~~~~~~g~~~~~~   94 (356)
                      ++|      ++|+++. .|+.+.+.
T Consensus       918 ivL~p~gG~~~G~Iv~-~g~~~el~  941 (972)
T 2r6f_A          918 IDLGPEGGDRGGQIVA-VGTPEEVA  941 (972)
T ss_dssp             EEECSSSTTSCCSEEE-EESHHHHH
T ss_pred             EEEcCCCCCCCCEEEE-ecCHHHHH
Confidence            999      6788875 56665543

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.72  E-value=1e-20  Score=185.32  Aligned_cols=127  Identities=13%  Similarity=0.027  Sum_probs=92.7

Q ss_pred             CCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCC-c-eeEeeeccccCcCCeeee
Q psy2684         177 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG-K-VLLEKVNFGLDMESRVAL  254 (356)
Q Consensus       177 ~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G-~-i~~~g~~~~~~~~~~ial  254 (356)
                      .++++++|+++.|+       ++||++.+|++++|+||||||||||+++|+|+++|++| + |+++|.            
T Consensus       116 ~~mi~~~nl~~~y~-------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~------------  176 (460)
T 2npi_A          116 HTMKYIYNLHFMLE-------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD------------  176 (460)
T ss_dssp             CTHHHHHHHHHHHH-------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC------------
T ss_pred             cchhhhhhhhehhh-------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC------------
Confidence            46788999998882       79999999999999999999999999999999999999 8 988751            


Q ss_pred             ecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCC-CCCCCCCHHHHHHHh---cC-CCHHHHHHHHhhcCC
Q psy2684         255 VGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGE-HLFPDDTPCEYLMKL---FN-LPYEKSRRQLGMFGL  329 (356)
Q Consensus       255 vG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~-~l~~~~t~~e~~~~~---~~-~~~~~~~~~L~~~~l  329 (356)
                                                   .+..++|++|+... .+....++.+++...   .+ .....+..++..+|+
T Consensus       177 -----------------------------~~~~i~~vpq~~~l~~~~~~~tv~eni~~~~~~~~~~~~~~~~~ll~~~gl  227 (460)
T 2npi_A          177 -----------------------------PQQPIFTVPGCISATPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGL  227 (460)
T ss_dssp             -----------------------------TTSCSSSCSSCCEEEECCSCCCTTCTTCSCBCBSSCCSSCCBCCEECCCCS
T ss_pred             -----------------------------ccCCeeeeccchhhcccccccchhhhhcccccccCcchHHHHHHHHHHhCC
Confidence                                         02346677776521 122334454443100   01 011234456788888


Q ss_pred             CCccccCCCCCCChHHHHHHHHHHH
Q psy2684         330 PSYAHTIPIRDLSGGQKARVALAEL  354 (356)
Q Consensus       330 ~~~~~~~~~~~LSGGqkqRvalA~~  354 (356)
                      .....   +.+|||||||||+||++
T Consensus       228 ~~~~~---~~~LSgGq~qrlalAra  249 (460)
T 2npi_A          228 ERINE---NKDLYLECISQLGQVVG  249 (460)
T ss_dssp             SSGGG---CHHHHHHHHHHHHHHHH
T ss_pred             Ccccc---hhhhhHHHHHHHHHHHH
Confidence            76543   58999999999999998

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.69  E-value=5e-17  Score=153.68  Aligned_cols=76  Identities=33%  Similarity=0.471  Sum_probs=67.4

Q ss_pred             CCCCCcCCHHHHH------HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcC
Q psy2684           3 EKSTKEFSGGWRI------RVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICT   73 (356)
Q Consensus         3 ~~~~~~LSgGe~~------r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~   73 (356)
                      ++++.+|||||||      |+++|++|+.+|++|||||||++||+..+..|.++|+++   +.|||+||||.+ +...||
T Consensus       243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~-~~~~~d  321 (339)
T 3qkt_A          243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAAD  321 (339)
T ss_dssp             EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGCS
T ss_pred             cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHHhCC
Confidence            5788999999999      678888888999999999999999999999998888765   359999999966 557899


Q ss_pred             EEEEEe
Q psy2684          74 DIIHLD   79 (356)
Q Consensus        74 ~i~~l~   79 (356)
                      ++++|+
T Consensus       322 ~~~~l~  327 (339)
T 3qkt_A          322 HVIRIS  327 (339)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999996

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.68  E-value=1e-16  Score=150.51  Aligned_cols=88  Identities=16%  Similarity=0.168  Sum_probs=75.1

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEE-
Q psy2684           3 EKSTKEFSGGWRIRVSLARALF----LEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDI-   75 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~----~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i-   75 (356)
                      ++++.+||||||||++||++|+    .+|++|||||||++||+..+.++.++++++  +.+||+|||+.+ +..+||++ 
T Consensus       214 ~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~-~~~~~d~~~  292 (322)
T 1e69_A          214 DQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI-VMEAADLLH  292 (322)
T ss_dssp             CCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTT-GGGGCSEEE
T ss_pred             cCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHH-HHhhCceEE
Confidence            4678899999999999999997    578999999999999999999999999876  569999999965 55689987 


Q ss_pred             -EEEeCCeEeEecCCHH
Q psy2684          76 -IHLDMKKLFYYKGNFT   91 (356)
Q Consensus        76 -~~l~~g~~~~~~g~~~   91 (356)
                       ++|.+|.......+.+
T Consensus       293 ~v~~~~g~s~~~~~~~~  309 (322)
T 1e69_A          293 GVTMVNGVSAIVPVEVE  309 (322)
T ss_dssp             EEEESSSCEEEEECCC-
T ss_pred             EEEEeCCEEEEEEEEcc
Confidence             8888887766555544

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=99.64  E-value=2.3e-16  Score=157.37  Aligned_cols=78  Identities=22%  Similarity=0.224  Sum_probs=70.2

Q ss_pred             CCCCCcC-CHHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEE
Q psy2684           3 EKSTKEF-SGGWRIRVSLARALFLEP--TLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         3 ~~~~~~L-SgGe~~r~~la~~l~~~p--~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .+++.+| ||||+||++||++|+.+|  ++|||||||++||+.++..+.++|+++  +.|||+||||.+++. .||++++
T Consensus       391 ~~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d~~~~  469 (517)
T 4ad8_A          391 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYK  469 (517)
T ss_dssp             CCBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSSEEEE
T ss_pred             cccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEE
Confidence            3678888 999999999999999999  999999999999999998888777665  689999999999875 6999999


Q ss_pred             EeCC
Q psy2684          78 LDMK   81 (356)
Q Consensus        78 l~~g   81 (356)
                      |+.+
T Consensus       470 ~~~~  473 (517)
T 4ad8_A          470 VEKQ  473 (517)
T ss_dssp             EECC
T ss_pred             Eecc
Confidence            9654

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.63  E-value=1.5e-16  Score=136.59  Aligned_cols=72  Identities=4%  Similarity=-0.030  Sum_probs=66.4

Q ss_pred             CCCCCcCCHHHHHHHHHHHH-----HccCCCEEEEeC--CCCCCCHHHHHHHHHHHHhcCcEEEEEe---cChhHHhhhc
Q psy2684           3 EKSTKEFSGGWRIRVSLARA-----LFLEPTLLLLDE--PTNHLDLNAVIWLDNYLQTWKKTLLVVS---HDQSFLNNIC   72 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~-----l~~~p~~llLDE--Pt~~LD~~~~~~l~~~l~~~~~tvi~vs---Hd~~~l~~~~   72 (356)
                      ++++.+|||||+||++||++     |+.+|++|||||  ||++||+...+++.+++++.+.|+|+++   ||++++..+|
T Consensus        71 ~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i~  150 (178)
T 1ye8_A           71 GSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIR  150 (178)
T ss_dssp             TTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHH
T ss_pred             cccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHHH
Confidence            45677899999999999996     999999999999  9999999999999999998777788888   5999999999


Q ss_pred             CE
Q psy2684          73 TD   74 (356)
Q Consensus        73 ~~   74 (356)
                      ++
T Consensus       151 ~r  152 (178)
T 1ye8_A          151 RL  152 (178)
T ss_dssp             TC
T ss_pred             hc
Confidence            98

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.62  E-value=4.6e-16  Score=147.57  Aligned_cols=83  Identities=17%  Similarity=0.054  Sum_probs=74.3

Q ss_pred             CCCCC-cCCHHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhc
Q psy2684           3 EKSTK-EFSGGWRIRVSLARALF---------LEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNIC   72 (356)
Q Consensus         3 ~~~~~-~LSgGe~~r~~la~~l~---------~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~   72 (356)
                      ++++. .|||||+||++||++|+         .+|+||||||||++||+..+..|.+++.++..|+|++||+ +.   .|
T Consensus       259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~---~~  334 (359)
T 2o5v_A          259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP---GA  334 (359)
T ss_dssp             TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT---TC
T ss_pred             CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc---cC
Confidence            45666 89999999999999999         8999999999999999999999999999888899999995 43   79


Q ss_pred             CEEEEEeCCeEeEecCCH
Q psy2684          73 TDIIHLDMKKLFYYKGNF   90 (356)
Q Consensus        73 ~~i~~l~~g~~~~~~g~~   90 (356)
                      |++++|++|++... |+.
T Consensus       335 ~~i~~l~~G~i~~~-g~~  351 (359)
T 2o5v_A          335 ALTLRAQAGRFTPV-ADE  351 (359)
T ss_dssp             SEEEEEETTEEEEC-CCT
T ss_pred             CEEEEEECCEEEec-CCH
Confidence            99999999999864 443

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.60  E-value=1.5e-18  Score=160.91  Aligned_cols=56  Identities=25%  Similarity=0.264  Sum_probs=51.6

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeE
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL  239 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~  239 (356)
                      .|+++||++.|+  ..+|+++||+|++|++++|+||||||||||+++|+|++   +|+|..
T Consensus       101 ~i~~~~vs~~y~--~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~  156 (305)
T 2v9p_A          101 FFNYQNIELITF--INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLS  156 (305)
T ss_dssp             HHHHTTCCHHHH--HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEEC
T ss_pred             eEEEEEEEEEcC--hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEE
Confidence            478999999994  67999999999999999999999999999999999999   788853

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.57  E-value=2.3e-17  Score=145.14  Aligned_cols=43  Identities=23%  Similarity=0.302  Sum_probs=39.1

Q ss_pred             CCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCcee
Q psy2684         191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL  238 (356)
Q Consensus       191 ~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~  238 (356)
                      +++.+|+++    .+|++++|+||||||||||+++|+|+ +|++|+|.
T Consensus        11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~   53 (208)
T 3b85_A           11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS   53 (208)
T ss_dssp             HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS
T ss_pred             hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee
Confidence            445688885    89999999999999999999999999 99999994

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.57  E-value=5.2e-16  Score=151.92  Aligned_cols=84  Identities=13%  Similarity=0.222  Sum_probs=76.6

Q ss_pred             CCcCCHHHHHHHHHHHH--HccCCCE----EEEeC-CCCCCCHHHHHHHHHHHHhcCcEEEEEecChh------HHhhhc
Q psy2684           6 TKEFSGGWRIRVSLARA--LFLEPTL----LLLDE-PTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQS------FLNNIC   72 (356)
Q Consensus         6 ~~~LSgGe~~r~~la~~--l~~~p~~----llLDE-Pt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~------~l~~~~   72 (356)
                      +.+|||||+||++||++  |+.+|++    ||||| ||++||+. .+.|.+++++++.|+|+|+||.+      ++..+|
T Consensus       233 ~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~  311 (460)
T 2npi_A          233 NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFG  311 (460)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhc
Confidence            56899999999999999  9999999    99999 99999999 88899999999999999999987      777899


Q ss_pred             CE-----EEEEe-CCeEeEecCCHHH
Q psy2684          73 TD-----IIHLD-MKKLFYYKGNFTL   92 (356)
Q Consensus        73 ~~-----i~~l~-~g~~~~~~g~~~~   92 (356)
                      |+     |++|+ +|+++  .|+.+.
T Consensus       312 dr~~~~~vi~l~k~G~iv--~g~~~~  335 (460)
T 2npi_A          312 PELGNNNIFFIPKLDGVS--AVDDVY  335 (460)
T ss_dssp             HHHCGGGEEEECCCTTCC--CCCHHH
T ss_pred             ccccCCEEEEEeCCCcEE--ECCHHH
Confidence            99     99999 99987  566543

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.56  E-value=8.7e-18  Score=156.85  Aligned_cols=121  Identities=15%  Similarity=0.071  Sum_probs=90.4

Q ss_pred             CcEEEecceeeeCCCccccccceee-----------------------ecCCCeEEEEcCCCCCcchhhhhhccccccCC
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFG-----------------------LDMESRVALVGPNGIGKSTFLNLLKGELTPNK  234 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~-----------------------i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~  234 (356)
                      ..+++++|++.|.   ++++++++.                       +.+|++++|+||||||||||+++|+|+++|..
T Consensus        42 ~~i~~~~v~~~y~---p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~  118 (312)
T 3aez_A           42 EQIDLLEVEEVYL---PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWD  118 (312)
T ss_dssp             CCCCHHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTST
T ss_pred             CeEEeeehhhhhh---hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccC
Confidence            3589999999993   577777764                       89999999999999999999999999998864


Q ss_pred             CceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh--
Q psy2684         235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL--  312 (356)
Q Consensus       235 G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~--  312 (356)
                      |.                                                 .+++|++|+..  +++. |+.+++...  
T Consensus       119 G~-------------------------------------------------~~v~~v~qd~~--~~~~-t~~e~~~~~~~  146 (312)
T 3aez_A          119 HH-------------------------------------------------PRVDLVTTDGF--LYPN-AELQRRNLMHR  146 (312)
T ss_dssp             TC-------------------------------------------------CCEEEEEGGGG--BCCH-HHHHHTTCTTC
T ss_pred             CC-------------------------------------------------CeEEEEecCcc--CCcc-cHHHHHHHHHh
Confidence            31                                                 24789999863  5555 777765321  


Q ss_pred             cCC----CHHHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHc
Q psy2684         313 FNL----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT  355 (356)
Q Consensus       313 ~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~  355 (356)
                      .+.    ..+.+.+.|+.++ .+... .++..|||||+||+++|+++
T Consensus       147 ~g~~~~~d~~~~~~~L~~l~-~~~~~-~~~~~lS~G~~qRv~~a~al  191 (312)
T 3aez_A          147 KGFPESYNRRALMRFVTSVK-SGSDY-ACAPVYSHLHYDIIPGAEQV  191 (312)
T ss_dssp             TTSGGGBCHHHHHHHHHHHH-TTCSC-EEEEEEETTTTEEEEEEEEE
T ss_pred             cCCChHHHHHHHHHHHHHhC-CCccc-CCcccCChhhhhhhhhHHHh
Confidence            122    2355677888887 44332 35679999999999998764

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=99.56  E-value=8.1e-15  Score=140.14  Aligned_cols=76  Identities=29%  Similarity=0.448  Sum_probs=67.9

Q ss_pred             CCCCcCCHHHHHHH------HHHHHHccC-CCEEEEeCCCCCCCHHHHHHHHHHHHhcC--cEEEEEecChhHHhhhcCE
Q psy2684           4 KSTKEFSGGWRIRV------SLARALFLE-PTLLLLDEPTNHLDLNAVIWLDNYLQTWK--KTLLVVSHDQSFLNNICTD   74 (356)
Q Consensus         4 ~~~~~LSgGe~~r~------~la~~l~~~-p~~llLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~l~~~~~~   74 (356)
                      +++..|||||+||+      ++|++|+.+ |++|||||||++||+..+..+.+++.++.  .+||+||||.+ +..+||+
T Consensus       276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~  354 (371)
T 3auy_A          276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADV  354 (371)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSE
T ss_pred             cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCE
Confidence            56789999999988      557888999 99999999999999999999999998863  59999999987 5788999


Q ss_pred             EEEEeC
Q psy2684          75 IIHLDM   80 (356)
Q Consensus        75 i~~l~~   80 (356)
                      +++|+.
T Consensus       355 ~~~l~k  360 (371)
T 3auy_A          355 IINVKK  360 (371)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999973

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.55  E-value=9e-17  Score=154.86  Aligned_cols=114  Identities=18%  Similarity=0.190  Sum_probs=83.1

Q ss_pred             ccccccceeeecCCC--------------------eEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCee
Q psy2684         193 KVLLEKVNFGLDMES--------------------RVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRV  252 (356)
Q Consensus       193 ~~~l~~~sl~i~~ge--------------------~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~i  252 (356)
                      +.+++++||+|++|+                    +++|+||||||||||+|+|+|+++|++|+|.++|.+..       
T Consensus        36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------  108 (413)
T 1tq4_A           36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------  108 (413)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred             HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence            458999999999999                    99999999999999999999999999999988754321       


Q ss_pred             eeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCCCCc
Q psy2684         253 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSY  332 (356)
Q Consensus       253 alvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l~~~  332 (356)
                                                        +.+|++|++   .++..++.++.....  ....+.++|+.+++...
T Consensus       109 ----------------------------------~~~~v~q~~---~~~~ltv~D~~g~~~--~~~~~~~~L~~~~L~~~  149 (413)
T 1tq4_A          109 ----------------------------------MERHPYKHP---NIPNVVFWDLPGIGS--TNFPPDTYLEKMKFYEY  149 (413)
T ss_dssp             ----------------------------------CCCEEEECS---SCTTEEEEECCCGGG--SSCCHHHHHHHTTGGGC
T ss_pred             ----------------------------------eeEEecccc---ccCCeeehHhhcccc--hHHHHHHHHHHcCCCcc
Confidence                                              015666653   234444444321111  12346788899988764


Q ss_pred             cccCCCCCCChH--HHHHHHHHHHc
Q psy2684         333 AHTIPIRDLSGG--QKARVALAELT  355 (356)
Q Consensus       333 ~~~~~~~~LSGG--qkqRvalA~~~  355 (356)
                      . ..+ . ||||  |+||++||+++
T Consensus       150 ~-~~~-~-lS~G~~~kqrv~la~aL  171 (413)
T 1tq4_A          150 D-FFI-I-ISATRFKKNDIDIAKAI  171 (413)
T ss_dssp             S-EEE-E-EESSCCCHHHHHHHHHH
T ss_pred             C-CeE-E-eCCCCccHHHHHHHHHH
Confidence            3 223 3 9999  99999999986

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.54  E-value=3.7e-17  Score=144.95  Aligned_cols=47  Identities=21%  Similarity=0.315  Sum_probs=33.4

Q ss_pred             cccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc
Q psy2684         194 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF  244 (356)
Q Consensus       194 ~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~  244 (356)
                      .-|+++||+|++|++++|+||||||||||+++|+|++ |  |.|.+ |.++
T Consensus        11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~   57 (218)
T 1z6g_A           11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSC   57 (218)
T ss_dssp             -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCE
T ss_pred             ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecc
Confidence            3689999999999999999999999999999999999 6  99988 7654

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.54  E-value=3.9e-18  Score=156.07  Aligned_cols=106  Identities=16%  Similarity=0.145  Sum_probs=59.4

Q ss_pred             eEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCce
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLR  287 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~  287 (356)
                      .++|+||||||||||+++|+|+..|++|+|.++|.++..                                   ......
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~-----------------------------------~~~~~~   48 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK-----------------------------------TVEIKA   48 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC------------CCC-----------------------------------CCSCCE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc-----------------------------------ceeeee
Confidence            479999999999999999999999999999998765420                                   011346


Q ss_pred             EEEeecCcCCCCCCCCCHHHHHHHhcCC----CHHHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHc
Q psy2684         288 IGKFDQHSGEHLFPDDTPCEYLMKLFNL----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT  355 (356)
Q Consensus       288 ig~~~Q~~~~~l~~~~t~~e~~~~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~  355 (356)
                      ++|++|++  .+++.+|+.+++......    ....+.+++.    .... .+.+.+||||||||+++||++
T Consensus        49 i~~v~q~~--~~~~~ltv~d~~~~g~~~~~~~~~~~i~~~~~----~~~~-~~~~~~LS~G~~qrv~iaRal  113 (270)
T 3sop_A           49 IGHVIEEG--GVKMKLTVIDTPGFGDQINNENCWEPIEKYIN----EQYE-KFLKEEVNIARKKRIPDTRVH  113 (270)
T ss_dssp             EEESCC------CCEEEEECCCC--CCSBCTTCSHHHHHHHH----HHHH-HHHHHHSCTTCCSSCCCCSCC
T ss_pred             eEEEeecC--CCcCCceEEechhhhhhcccHHHHHHHHHHHH----HHHH-hhhHHhcCcccchhhhhheee
Confidence            89999975  356666776654322111    1123333332    1112 235679999999999999875

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=99.51  E-value=4.2e-14  Score=137.80  Aligned_cols=75  Identities=20%  Similarity=0.347  Sum_probs=67.5

Q ss_pred             CCCCcCCHHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHhcC---cEEEEEecChhHHhhhcCEEE
Q psy2684           4 KSTKEFSGGWRIRVSLARALF----LEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK---KTLLVVSHDQSFLNNICTDII   76 (356)
Q Consensus         4 ~~~~~LSgGe~~r~~la~~l~----~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~---~tvi~vsHd~~~l~~~~~~i~   76 (356)
                      +++..|||||+|+++||++|+    .+|++|||||||++||+..+.++.++++++.   .++|+|||+..++ ..||+++
T Consensus       329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~d~~~  407 (430)
T 1w1w_A          329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDALV  407 (430)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEEE
T ss_pred             cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhCCEEE
Confidence            556789999999999999999    5799999999999999999999999998763   5999999997765 5699999


Q ss_pred             EEe
Q psy2684          77 HLD   79 (356)
Q Consensus        77 ~l~   79 (356)
                      .|.
T Consensus       408 ~~~  410 (430)
T 1w1w_A          408 GVY  410 (430)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            996

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.48  E-value=1.1e-15  Score=148.79  Aligned_cols=64  Identities=17%  Similarity=0.173  Sum_probs=59.2

Q ss_pred             CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeee
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKV  242 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~  242 (356)
                      ++++++++++.|..+..+++++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.+.|.
T Consensus       130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~  193 (438)
T 2dpy_A          130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGE  193 (438)
T ss_dssp             CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred             CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEece
Confidence            4689999999995467799999 999999999999999999999999999999999999998875

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.47  E-value=1.3e-14  Score=123.49  Aligned_cols=66  Identities=6%  Similarity=0.075  Sum_probs=56.7

Q ss_pred             CCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH----------------HHHHHHHHHH---hcCcEEEEEecChh
Q psy2684           6 TKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLN----------------AVIWLDNYLQ---TWKKTLLVVSHDQS   66 (356)
Q Consensus         6 ~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~----------------~~~~l~~~l~---~~~~tvi~vsHd~~   66 (356)
                      +...||||+||++||++++.+|++|+|||||++||+.                ....+.+.++   +-+.|+|+||||++
T Consensus        81 ~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~  160 (171)
T 4gp7_A           81 TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE  160 (171)
T ss_dssp             CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence            4567999999999999999999999999999999999                5566666643   33789999999999


Q ss_pred             HHhhh
Q psy2684          67 FLNNI   71 (356)
Q Consensus        67 ~l~~~   71 (356)
                      ++..+
T Consensus       161 ~~~~~  165 (171)
T 4gp7_A          161 EVEEV  165 (171)
T ss_dssp             HHHHE
T ss_pred             Hhhhh
Confidence            99763

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.45  E-value=6.5e-14  Score=135.57  Aligned_cols=40  Identities=23%  Similarity=0.272  Sum_probs=36.4

Q ss_pred             cccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCC
Q psy2684         194 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK  234 (356)
Q Consensus       194 ~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~  234 (356)
                      ..+++++|++.+| +++|+||||||||||+++|.++..+.+
T Consensus        49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~   88 (415)
T 4aby_A           49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRA   88 (415)
T ss_dssp             TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCC
T ss_pred             cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence            4789999999999 999999999999999999988887543

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.44  E-value=1.9e-15  Score=140.31  Aligned_cols=126  Identities=15%  Similarity=0.083  Sum_probs=86.9

Q ss_pred             cccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCC
Q psy2684         196 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP  275 (356)
Q Consensus       196 l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~  275 (356)
                      +.++||++.+|++++|+|||||||||+++.|+|+++|++|+|.+.|.++....           +.+  -++        
T Consensus        90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~-----------a~~--ql~--------  148 (302)
T 3b9q_A           90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAA-----------ASD--QLE--------  148 (302)
T ss_dssp             CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHH-----------HHH--HHH--------
T ss_pred             ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchh-----------HHH--HHH--------
Confidence            46789999999999999999999999999999999999999999987652100           000  000        


Q ss_pred             CcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc--CCCHHHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHH
Q psy2684         276 NKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF--NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAE  353 (356)
Q Consensus       276 ~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~  353 (356)
                           .+..+..++|++|++. .+++..++.+++....  +..    ..+++.+|+.+.... ++.+||   |||++||+
T Consensus       149 -----~~~~~~~i~~v~q~~~-~~~~~~~v~e~l~~~~~~~~d----~~lldt~gl~~~~~~-~~~eLS---kqr~~iar  214 (302)
T 3b9q_A          149 -----IWAERTGCEIVVAEGD-KAKAATVLSKAVKRGKEEGYD----VVLCDTSGRLHTNYS-LMEELI---ACKKAVGK  214 (302)
T ss_dssp             -----HHHHHHTCEEECCC---CCCHHHHHHHHHHHHHHTTCS----EEEECCCCCSSCCHH-HHHHHH---HHHHHHHT
T ss_pred             -----HHHHhcCceEEEecCC-ccCHHHHHHHHHHHHHHcCCc----chHHhcCCCCcchhH-HHHHHH---HHHHHHHH
Confidence                 0001235899999863 2566677777764321  111    124667777665544 568999   99999998


Q ss_pred             HcC
Q psy2684         354 LTL  356 (356)
Q Consensus       354 ~~l  356 (356)
                      +++
T Consensus       215 al~  217 (302)
T 3b9q_A          215 IVS  217 (302)
T ss_dssp             TST
T ss_pred             hhc
Confidence            863

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.40  E-value=6.8e-15  Score=123.66  Aligned_cols=62  Identities=18%  Similarity=0.147  Sum_probs=55.2

Q ss_pred             EEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc
Q psy2684         181 GLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF  244 (356)
Q Consensus       181 ~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~  244 (356)
                      ..+++++.| ++..+++++||+|.+|++++|+||||||||||+++|+|++ |++|+|.++|.++
T Consensus         9 ~~~~~~~~~-g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i   70 (158)
T 1htw_A            9 PDEFSMLRF-GKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTL   70 (158)
T ss_dssp             CSHHHHHHH-HHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTC
T ss_pred             CCHHHHHHH-HHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEee
Confidence            345778888 5567899999999999999999999999999999999999 9999999887554

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=99.39  E-value=1.6e-15  Score=146.75  Aligned_cols=141  Identities=17%  Similarity=0.171  Sum_probs=92.6

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      .++++++++.| +...+|+++ +. .+|++++|+||||||||||+++|+|++.|++|+|.+.+.++......        
T Consensus       143 ~~~l~~Lg~~~-~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~--------  211 (418)
T 1p9r_A          143 RLDLHSLGMTA-HNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDG--------  211 (418)
T ss_dssp             CCCGGGSCCCH-HHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSS--------
T ss_pred             CCCHHHcCCCH-HHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCC--------
Confidence            46778888877 445678888 54 89999999999999999999999999999999999988765321100        


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEE---------eecCcCCCCCCC----CCHHHHHHHh-cC---------C
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGK---------FDQHSGEHLFPD----DTPCEYLMKL-FN---------L  315 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~---------~~Q~~~~~l~~~----~t~~e~~~~~-~~---------~  315 (356)
                                          ........++++         +.|+|...++.+    .|+.+++... .+         .
T Consensus       212 --------------------~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~  271 (418)
T 1p9r_A          212 --------------------IGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTN  271 (418)
T ss_dssp             --------------------SEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             --------------------cceEEEccccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchh
Confidence                                000001112333         347765322333    4565555332 11         1


Q ss_pred             CHHHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHc
Q psy2684         316 PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT  355 (356)
Q Consensus       316 ~~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~  355 (356)
                      ....+...|..+|+....   .+.+|||||+||  ||+++
T Consensus       272 ~~~~~i~rL~~lgl~~~~---~~~~LSgg~~QR--LaraL  306 (418)
T 1p9r_A          272 TAVGAVTRLRDMGIEPFL---ISSSLLGVLAQR--LVRTL  306 (418)
T ss_dssp             SSHHHHHHHHHHTCCHHH---HHHHEEEEEEEE--EEEEE
T ss_pred             hHHHHHHHHHHcCCcHHH---HHHHHHHHHHHH--hhhhh
Confidence            223445567888887643   457999999999  66654

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.39  E-value=9.1e-14  Score=131.31  Aligned_cols=118  Identities=20%  Similarity=0.190  Sum_probs=79.4

Q ss_pred             ccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc-cCCCceeEe-eeccccCcCCeeeeecCCCCchhhHHHHHhCC
Q psy2684         195 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-PNKGKVLLE-KVNFGLDMESRVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       195 ~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~-p~~G~i~~~-g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~  272 (356)
                      -++++++. .+|++++|+||||||||||+++|+|+.. |..|+|.+. |.                  |+.|        
T Consensus       205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~------------------g~~t--------  257 (358)
T 2rcn_A          205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGL------------------GQHT--------  257 (358)
T ss_dssp             THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC--------------------------------------
T ss_pred             CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCC------------------Cccc--------
Confidence            46677764 4799999999999999999999999999 999999775 32                  1111        


Q ss_pred             CCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHH----HHHHHhhcCCCCccccCCCCCCChHHHHH
Q psy2684         273 LTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEK----SRRQLGMFGLPSYAHTIPIRDLSGGQKAR  348 (356)
Q Consensus       273 ~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~----~~~~L~~~~l~~~~~~~~~~~LSGGqkqR  348 (356)
                                .....+++++|+.  .+++..++.++.  ....+..+    +.++++.+++....+. ++.+|| ||+||
T Consensus       258 ----------t~~~~i~~v~q~~--~l~dtpgv~e~~--l~~l~~~e~~~~~~e~l~~~gl~~f~~~-~~~~lS-G~~~r  321 (358)
T 2rcn_A          258 ----------TTAARLYHFPHGG--DVIDSPGVREFG--LWHLEPEQITQGFVEFHDYLGHCKYRDC-KHDADP-GCAIR  321 (358)
T ss_dssp             -----------CCCEEEECTTSC--EEEECHHHHTCC--CCCCCHHHHHHTSGGGGGGTTCSSSTTC-CSSSCT-TCHHH
T ss_pred             ----------eEEEEEEEECCCC--EecCcccHHHhh--hcCCCHHHHHHHHHHHHHHcCCchhcCC-CcccCC-HHHHH
Confidence                      1134688999875  345555555531  12333333    3456888898877665 568999 99999


Q ss_pred             HHHHHHc
Q psy2684         349 VALAELT  355 (356)
Q Consensus       349 valA~~~  355 (356)
                      ++||+.+
T Consensus       322 ~ala~gl  328 (358)
T 2rcn_A          322 EAVENGA  328 (358)
T ss_dssp             HHHHHTS
T ss_pred             HHHHhcC
Confidence            9999875

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.38  E-value=3.2e-14  Score=128.13  Aligned_cols=109  Identities=16%  Similarity=0.103  Sum_probs=65.4

Q ss_pred             CCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCchhhHHHHHh
Q psy2684         191 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK  270 (356)
Q Consensus       191 ~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~  270 (356)
                      +++.+|+++||++.+|+++||+||||||||||+++|+|++    |.+.++                              
T Consensus        10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~------------------------------   55 (245)
T 2jeo_A           10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE------------------------------   55 (245)
T ss_dssp             -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC------------------------------
T ss_pred             CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc------------------------------
Confidence            4567999999999999999999999999999999999976    444332                              


Q ss_pred             CCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC---C------CHHHHHHHHhhcCCCCccccCCCCCC
Q psy2684         271 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN---L------PYEKSRRQLGMFGLPSYAHTIPIRDL  341 (356)
Q Consensus       271 g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~---~------~~~~~~~~L~~~~l~~~~~~~~~~~L  341 (356)
                                  ..+..++|++|+.   ++...++.++......   .      ....+.+.|+.+  .+... .++..|
T Consensus        56 ------------~~~~~i~~v~~d~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--~~~~~-~~~~~l  117 (245)
T 2jeo_A           56 ------------QRQRKVVILSQDR---FYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNI--VEGKT-VEVPTY  117 (245)
T ss_dssp             ------------GGGCSEEEEEGGG---GBCCCCHHHHHHHHTTCCCTTSGGGBCHHHHHHHHHHH--HTTCC-EEECCE
T ss_pred             ------------ccCCceEEEeCCc---CccccCHhHhhhhhccCCCCCCcccccHHHHHHHHHHH--HCCCC-eecccc
Confidence                        0123589999984   5567788776543211   1      123345555543  22233 356799


Q ss_pred             ChHHHHHHHH
Q psy2684         342 SGGQKARVAL  351 (356)
Q Consensus       342 SGGqkqRval  351 (356)
                      |+||+||+++
T Consensus       118 s~g~~~r~~~  127 (245)
T 2jeo_A          118 DFVTHSRLPE  127 (245)
T ss_dssp             ETTTTEECSS
T ss_pred             cccccCccCc
Confidence            9999999865

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.38  E-value=1.1e-14  Score=137.92  Aligned_cols=125  Identities=15%  Similarity=0.089  Sum_probs=86.9

Q ss_pred             ccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCC
Q psy2684         197 EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN  276 (356)
Q Consensus       197 ~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~  276 (356)
                      .++||++.+|++++|+|||||||||+++.|+|+++|++|+|.+.+.++....           +.+  -++         
T Consensus       148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~-----------a~e--ql~---------  205 (359)
T 2og2_A          148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAA-----------ASD--QLE---------  205 (359)
T ss_dssp             CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHH-----------HHH--HHH---------
T ss_pred             CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccc-----------hhH--HHH---------
Confidence            4689999999999999999999999999999999999999999987652100           000  000         


Q ss_pred             cceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc--CCCHHHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHH
Q psy2684         277 KGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF--NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAEL  354 (356)
Q Consensus       277 ~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~  354 (356)
                          .+..+..++|++|++. .+++..++.+++....  +..    ..+++.+|+.+.... ++.+||   +||++||++
T Consensus       206 ----~~~~r~~i~~v~q~~~-~~~p~~tv~e~l~~~~~~~~d----~~lldt~Gl~~~~~~-~~~eLS---kqr~~iara  272 (359)
T 2og2_A          206 ----IWAERTGCEIVVAEGD-KAKAATVLSKAVKRGKEEGYD----VVLCDTSGRLHTNYS-LMEELI---ACKKAVGKI  272 (359)
T ss_dssp             ----HHHHHHTCEEECCSSS-SCCHHHHHHHHHHHHHHTTCS----EEEEECCCCSSCCHH-HHHHHH---HHHHHHHHH
T ss_pred             ----HHHHhcCeEEEEeccc-ccChhhhHHHHHHHHHhCCCH----HHHHHhcCCChhhhh-HHHHHH---HHHHHHHHH
Confidence                0001235899999852 1556667777764321  111    124567787665544 568999   999999998


Q ss_pred             cC
Q psy2684         355 TL  356 (356)
Q Consensus       355 ~l  356 (356)
                      ++
T Consensus       273 l~  274 (359)
T 2og2_A          273 VS  274 (359)
T ss_dssp             ST
T ss_pred             Hh
Confidence            63

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.38  E-value=1.1e-13  Score=117.70  Aligned_cols=31  Identities=32%  Similarity=0.396  Sum_probs=28.6

Q ss_pred             cceeeecCCCeEEEEcCCCCCcchhhhhhcc
Q psy2684         198 KVNFGLDMESRVALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       198 ~~sl~i~~ge~~~i~G~nGsGKSTll~~l~g  228 (356)
                      ++||++++||+++|+||||||||||++++.+
T Consensus         1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~   31 (171)
T 4gp7_A            1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK   31 (171)
T ss_dssp             CEEEEEESSEEEEEECCTTSCHHHHHHHHSC
T ss_pred             CccccCCCCEEEEEECCCCCCHHHHHHHHcc
Confidence            5899999999999999999999999998553

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.37  E-value=4e-14  Score=133.80  Aligned_cols=65  Identities=15%  Similarity=0.193  Sum_probs=58.5

Q ss_pred             CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeec
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN  243 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~  243 (356)
                      ++++++++++.|+.+..+++++ |+|.+|++++|+||||||||||+++|+|+..|+.|.|.+.|.+
T Consensus        44 ~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~  108 (347)
T 2obl_A           44 DPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGER  108 (347)
T ss_dssp             CSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCC
T ss_pred             CCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEeccc
Confidence            4688999999995467799999 9999999999999999999999999999999999988776543

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.36  E-value=8.4e-14  Score=130.89  Aligned_cols=50  Identities=16%  Similarity=0.351  Sum_probs=47.2

Q ss_pred             cccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeec
Q psy2684         194 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN  243 (356)
Q Consensus       194 ~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~  243 (356)
                      .+++++||.|.+|++++|+||||||||||+++|+|+++|++|.|.++|.+
T Consensus       159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~  208 (330)
T 2pt7_A          159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE  208 (330)
T ss_dssp             HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC
T ss_pred             HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee
Confidence            37899999999999999999999999999999999999999999998753

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.30  E-value=9.9e-14  Score=118.92  Aligned_cols=30  Identities=20%  Similarity=0.377  Sum_probs=25.6

Q ss_pred             eEEEEcCCCCCcchhhhhhccccccCCCceeEeee
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKV  242 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~  242 (356)
                      +++|+||||||||||+++|+|++.     |.++|.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~   31 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGF   31 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCE
Confidence            589999999999999999999985     555554

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.28  E-value=1.6e-13  Score=127.55  Aligned_cols=119  Identities=13%  Similarity=-0.030  Sum_probs=78.5

Q ss_pred             eeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeE---eeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCc
Q psy2684         201 FGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL---EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK  277 (356)
Q Consensus       201 l~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~---~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~  277 (356)
                      +++..|++++|+||||||||||+++|. +..|+.|+|.+   +|.++..                             . 
T Consensus       160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~-----------------------------~-  208 (302)
T 2yv5_A          160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTT-----------------------------G-  208 (302)
T ss_dssp             HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCC-----------------------------C-
T ss_pred             HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCcee-----------------------------e-
Confidence            345679999999999999999999999 99999999998   5544320                             0 


Q ss_pred             ceeEeCCCceEEEeecCcCCC---CCCCCCHHHHHHH-----------hcC-----CCHHHHHHHHhhcCCCCccccCCC
Q psy2684         278 GELRKSPRLRIGKFDQHSGEH---LFPDDTPCEYLMK-----------LFN-----LPYEKSRRQLGMFGLPSYAHTIPI  338 (356)
Q Consensus       278 g~~~~~~~~~ig~~~Q~~~~~---l~~~~t~~e~~~~-----------~~~-----~~~~~~~~~L~~~~l~~~~~~~~~  338 (356)
                      .....  ...+||++|+|...   +++.+|+ +++..           ..+     .+...++++|+.+++.....++++
T Consensus       209 ~~~~~--~~~~g~v~d~pg~~~~~l~~~lt~-e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~  285 (302)
T 2yv5_A          209 VRLIP--FGKGSFVGDTPGFSKVEATMFVKP-REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL  285 (302)
T ss_dssp             EEEEE--ETTTEEEESSCCCSSCCGGGTSCG-GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH
T ss_pred             EEEEE--cCCCcEEEECcCcCcCcccccCCH-HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH
Confidence            00111  12479999988532   2245666 44310           111     123458899999999863333467


Q ss_pred             CCCChHHHHHHHHHH
Q psy2684         339 RDLSGGQKARVALAE  353 (356)
Q Consensus       339 ~~LSGGqkqRvalA~  353 (356)
                      ..|||.+++++.||+
T Consensus       286 ~~ls~~~~R~~~~~~  300 (302)
T 2yv5_A          286 KIIKVYLEEIKELCR  300 (302)
T ss_dssp             HHTTCCCTTHHHHSS
T ss_pred             HHHHHHHHHHHHHhc
Confidence            899998899999986

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.26  E-value=1.9e-12  Score=129.19  Aligned_cols=80  Identities=14%  Similarity=0.110  Sum_probs=70.1

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH-----HHHHH---HHHHHhcCcEEEEEecCh--------
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLN-----AVIWL---DNYLQTWKKTLLVVSHDQ--------   65 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~-----~~~~l---~~~l~~~~~tvi~vsHd~--------   65 (356)
                      .++++.+|||||+||+++|+++..+|++|||| ||++||..     .+..+   .+.+++.+.|||+||||.        
T Consensus       347 ~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~  425 (525)
T 1tf7_A          347 VCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSI  425 (525)
T ss_dssp             CCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSS
T ss_pred             EEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccc
Confidence            35677899999999999999999999999999 99999998     66654   445556689999999999        


Q ss_pred             --hHHhhhcCEEEEEeCCe
Q psy2684          66 --SFLNNICTDIIHLDMKK   82 (356)
Q Consensus        66 --~~l~~~~~~i~~l~~g~   82 (356)
                        .++..+||+|++|+.|+
T Consensus       426 ~~~~l~~~~D~vi~L~~ge  444 (525)
T 1tf7_A          426 TDSHISTITDTIILLQYVE  444 (525)
T ss_dssp             CSSCCTTTCSEEEEEEEEE
T ss_pred             cCcccceeeeEEEEEEEEE
Confidence              88888999999998876

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.20  E-value=5.5e-13  Score=117.12  Aligned_cols=54  Identities=17%  Similarity=0.210  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhh
Q psy2684          12 GWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNN   70 (356)
Q Consensus        12 Ge~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~   70 (356)
                      |||||++||++|+.+|++|||||||++    ++.++.++|+++  +.||| ||||++++..
T Consensus       108 Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l~~g~tii-vtHd~~~~~~  163 (208)
T 3b85_A          108 VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRLGFGSKMV-VTGDITQVDL  163 (208)
T ss_dssp             EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTBCTTCEEE-EEEC------
T ss_pred             chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHhcCCCEEE-EECCHHHHhC
Confidence            999999999999999999999999999    777788888766  56888 9999987754

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=99.19  E-value=3.9e-12  Score=121.01  Aligned_cols=138  Identities=15%  Similarity=0.074  Sum_probs=84.2

Q ss_pred             EEecceee---eCC-Ccccc---------ccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccC
Q psy2684         181 GLHDVTFG---YPG-GKVLL---------EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLD  247 (356)
Q Consensus       181 ~~~~l~~~---~~~-~~~~l---------~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~  247 (356)
                      ++++++|.   |++ +..++         +++||.|.+|++++|+||||||||||+++|+|+++|++|.|.++|..-.  
T Consensus       137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~--  214 (361)
T 2gza_A          137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPEL--  214 (361)
T ss_dssp             TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCC--
T ss_pred             CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCcccc--
Confidence            56778877   732 12344         9999999999999999999999999999999999999999999864210  


Q ss_pred             cCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEee-cCcCCCCCCCCCHHHHHHHhcC----------CC
Q psy2684         248 MESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFD-QHSGEHLFPDDTPCEYLMKLFN----------LP  316 (356)
Q Consensus       248 ~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~-Q~~~~~l~~~~t~~e~~~~~~~----------~~  316 (356)
                                                ..      ...+..++|++ |+.....+...|+.+++.....          ..
T Consensus       215 --------------------------~~------~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r  262 (361)
T 2gza_A          215 --------------------------FL------PDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELR  262 (361)
T ss_dssp             --------------------------CC------TTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCC
T ss_pred             --------------------------Cc------cccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCch
Confidence                                      00      00134688998 7653222356788888764321          11


Q ss_pred             HHHHHHHHhhcCCCCc--cccCCCCCCChHHHHHHHHHH
Q psy2684         317 YEKSRRQLGMFGLPSY--AHTIPIRDLSGGQKARVALAE  353 (356)
Q Consensus       317 ~~~~~~~L~~~~l~~~--~~~~~~~~LSGGqkqRvalA~  353 (356)
                      ..++.+++..+.-.+.  ..... ..-+.+..+|++.+.
T Consensus       263 ~~~~~~~l~~l~~g~~~~l~t~H-~~~~~~~~~Rl~~l~  300 (361)
T 2gza_A          263 GGEAYDFINVAASGHGGSITSCH-AGSCELTFERLALMV  300 (361)
T ss_dssp             STHHHHHHHHHHTTCCSCEEEEE-CSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCeEEEEEC-CCCHHHHHHHHHHHH
Confidence            1345556655432221  11112 123566777777654

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.16  E-value=5.9e-13  Score=123.60  Aligned_cols=116  Identities=19%  Similarity=0.106  Sum_probs=72.4

Q ss_pred             CCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCC
Q psy2684         205 MESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP  284 (356)
Q Consensus       205 ~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~  284 (356)
                      +|++++|+|||||||||++++|+|+++|++|+|.+.|.++...           ++-+  -++             .+..
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~-----------~a~~--ql~-------------~~~~  154 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRA-----------AGGT--QLS-------------EWGK  154 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSST-----------TTTH--HHH-------------HHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCCh-----------hHHH--HHH-------------HHHH
Confidence            6899999999999999999999999999999999998775310           0000  000             0001


Q ss_pred             CceEEEeecCcCCCCCCCCCHHHHHHHhc--CCCHHHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         285 RLRIGKFDQHSGEHLFPDDTPCEYLMKLF--NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       285 ~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +..++|++|++.  +++..++.+++....  +..    ..+++..|..+...    ..++..++||++|||++.
T Consensus       155 ~~~i~~v~q~~~--~~p~~~v~~~v~~~~~~~~d----~~llDt~G~~~~~~----~~~~eLs~~r~~iaRal~  218 (304)
T 1rj9_A          155 RLSIPVIQGPEG--TDSAALAYDAVQAMKARGYD----LLFVDTAGRLHTKH----NLMEELKKVKRAIAKADP  218 (304)
T ss_dssp             HHTCCEECCCTT--CCHHHHHHHHHHHHHHHTCS----EEEECCCCCCTTCH----HHHHHHHHHHHHHHHHCT
T ss_pred             hcCceEEEeCCC--CCHHHHHHHHHHHHHhCCCC----EEEecCCCCCCchH----HHHHHHHHHHHHHHHhhc
Confidence            235789999863  555666666654211  100    00223334332221    234555689999999863

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.14  E-value=9.2e-13  Score=122.28  Aligned_cols=110  Identities=15%  Similarity=0.025  Sum_probs=66.0

Q ss_pred             eeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeE---eeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCc
Q psy2684         201 FGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL---EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK  277 (356)
Q Consensus       201 l~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~---~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~  277 (356)
                      |++..|++++|+||||||||||+++|+|+.+|++|+|.+   +|.++...                             .
T Consensus       164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~-----------------------------~  214 (301)
T 1u0l_A          164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTT-----------------------------A  214 (301)
T ss_dssp             HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCS-----------------------------C
T ss_pred             HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceee-----------------------------e
Confidence            456689999999999999999999999999999999998   66554210                             0


Q ss_pred             ceeEeCCCceEEEeecCcCC--------------CCCCCCCHHHHHHHhc----CCCHHHHHHHHhhcCCCCccccCCCC
Q psy2684         278 GELRKSPRLRIGKFDQHSGE--------------HLFPDDTPCEYLMKLF----NLPYEKSRRQLGMFGLPSYAHTIPIR  339 (356)
Q Consensus       278 g~~~~~~~~~ig~~~Q~~~~--------------~l~~~~t~~e~~~~~~----~~~~~~~~~~L~~~~l~~~~~~~~~~  339 (356)
                       ....  ...+||++|.|..              .++++.++ +++....    ......+.++|+.++|.....++.+.
T Consensus       215 -~~~~--~~~~g~v~q~p~~~~~~~~~~~~~~~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~  290 (301)
T 1u0l_A          215 -QLLK--FDFGGYVVDTPGFANLEINDIEPEELKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVK  290 (301)
T ss_dssp             -CEEE--CTTSCEEESSCSSTTCCCCSSCHHHHGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHH
T ss_pred             -EEEE--cCCCCEEEECcCCCccCCCcCCHHHHHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHH
Confidence             0110  1246788887641              25667666 5443211    12234688999999996333333557


Q ss_pred             CCCh
Q psy2684         340 DLSG  343 (356)
Q Consensus       340 ~LSG  343 (356)
                      .||+
T Consensus       291 ~lse  294 (301)
T 1u0l_A          291 MFYE  294 (301)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7875

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.13  E-value=5.5e-14  Score=130.53  Aligned_cols=54  Identities=26%  Similarity=0.331  Sum_probs=22.5

Q ss_pred             ecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccc-cccCCCceeEeeecc
Q psy2684         183 HDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE-LTPNKGKVLLEKVNF  244 (356)
Q Consensus       183 ~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl-~~p~~G~i~~~g~~~  244 (356)
                      +||++.| +++.++++++|+|      +|+|+||+|||||+++|.|. ..|++| +.++|.++
T Consensus         2 ~~l~~~~-~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~   56 (301)
T 2qnr_A            2 SNLPNQV-HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKI   56 (301)
T ss_dssp             -----------------CEEE------EEEEETTSSHHHHHHHHHC-----------------
T ss_pred             CCCcceE-CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCccc
Confidence            4788899 6678999999988      99999999999999999998 889988 77765443

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.12  E-value=2.9e-12  Score=111.71  Aligned_cols=58  Identities=24%  Similarity=0.297  Sum_probs=37.4

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccc-----ccCCCceeEe
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL-----TPNKGKVLLE  240 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~-----~p~~G~i~~~  240 (356)
                      +++++|+++.|+  ..++++  |.+.+|.+++|+|+||||||||++.++|..     .|+.|.+.+.
T Consensus         3 ~l~~~~~~~~~~--~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~   65 (210)
T 1pui_A            3 NLNYQQTHFVMS--APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLI   65 (210)
T ss_dssp             --------CEEE--ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCE
T ss_pred             chhhhhhhheee--cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceee
Confidence            478999999993  357777  899999999999999999999999999998     8888887653

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.11  E-value=1.6e-10  Score=108.20  Aligned_cols=32  Identities=34%  Similarity=0.539  Sum_probs=28.9

Q ss_pred             cceeeecCCCeEEEEcCCCCCcchhhhhhcccc
Q psy2684         198 KVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       198 ~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      +++|++.+| +++|+||||||||||+.+|..++
T Consensus        17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~ll   48 (322)
T 1e69_A           17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVF   48 (322)
T ss_dssp             CEEEECCSS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred             CeEEecCCC-cEEEECCCCCcHHHHHHHHHHHh
Confidence            568888888 99999999999999999999665

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=99.10  E-value=6.9e-13  Score=112.80  Aligned_cols=38  Identities=18%  Similarity=0.162  Sum_probs=31.6

Q ss_pred             CeEEEEcCCCCCcchhhhhhccccccC---CCceeEeeecc
Q psy2684         207 SRVALVGPNGIGKSTFLNLLKGELTPN---KGKVLLEKVNF  244 (356)
Q Consensus       207 e~~~i~G~nGsGKSTll~~l~gl~~p~---~G~i~~~g~~~  244 (356)
                      ++++|+|+||||||||+++|+|+++|+   .|.|.++|.++
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i   43 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGD   43 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC-----
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCccc
Confidence            579999999999999999999999998   89999998764

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=99.09  E-value=3e-11  Score=118.27  Aligned_cols=51  Identities=24%  Similarity=0.212  Sum_probs=48.6

Q ss_pred             cccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccc
Q psy2684         194 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFG  245 (356)
Q Consensus       194 ~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~  245 (356)
                      .+|+++||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus        18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~   68 (483)
T 3euj_A           18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA   68 (483)
T ss_dssp             TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred             ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence            479999999999 999999999999999999999999999999999998764

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.09  E-value=3.5e-13  Score=116.11  Aligned_cols=41  Identities=27%  Similarity=0.227  Sum_probs=36.5

Q ss_pred             eecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc
Q psy2684         202 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF  244 (356)
Q Consensus       202 ~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~  244 (356)
                      .+.+|++++|+|||||||||++++|+|.  |+.|.|.+++.++
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~   45 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDL   45 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccch
Confidence            4789999999999999999999999998  7889999987654

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.07  E-value=1.9e-11  Score=111.10  Aligned_cols=61  Identities=11%  Similarity=0.143  Sum_probs=53.0

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccC-CCceeEeeecccc
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN-KGKVLLEKVNFGL  246 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~-~G~i~~~g~~~~~  246 (356)
                      +++++++++.     .+|+++|  +.+|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..
T Consensus         5 ~~~l~~l~~~-----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~   66 (261)
T 2eyu_A            5 IPEFKKLGLP-----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY   66 (261)
T ss_dssp             -CCGGGSSCC-----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCS
T ss_pred             CCChHHCCCH-----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCccee
Confidence            3567788753     4899998  8999999999999999999999999999998 9999999977643

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.06  E-value=7.6e-12  Score=109.52  Aligned_cols=98  Identities=13%  Similarity=0.059  Sum_probs=63.6

Q ss_pred             ecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEe
Q psy2684         203 LDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRK  282 (356)
Q Consensus       203 i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~  282 (356)
                      ..+|++++|+||||||||||+++|+|++.|                                                  
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~--------------------------------------------------   32 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTLGE--------------------------------------------------   32 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHHGG--------------------------------------------------
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhCC--------------------------------------------------
Confidence            467888888888888888888888886543                                                  


Q ss_pred             CCCceEEEeecCcCCCCCCCCCHHHHHHHhcC----CCHHHHHHHHhhcCCCCccccCCCCCCChHHH----HHHHHHHH
Q psy2684         283 SPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN----LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQK----ARVALAEL  354 (356)
Q Consensus       283 ~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGqk----qRvalA~~  354 (356)
                          +++|++|+....-....++.++....++    .....+.+.++.+++...... |+..+|+||+    ||+++|++
T Consensus        33 ----~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~s~g~~~~~~~~~~~~~~  107 (211)
T 3asz_A           33 ----RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLRGLPVEM-PVYDFRAYTRSPRRTPVRPAPV  107 (211)
T ss_dssp             ----GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHTTCCEEE-CCEETTTTEECSSCEEECCCSE
T ss_pred             ----CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHcCCCcCC-CcccCcccCCCCCeEEeCCCcE
Confidence                2677888763221244566665432222    234556778888888766554 7899999974    56666654


Q ss_pred             c
Q psy2684         355 T  355 (356)
Q Consensus       355 ~  355 (356)
                      +
T Consensus       108 l  108 (211)
T 3asz_A          108 V  108 (211)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.03  E-value=8.9e-12  Score=117.39  Aligned_cols=66  Identities=24%  Similarity=0.222  Sum_probs=59.9

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccc
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFG  245 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~  245 (356)
                      +++++++++.| ++..+++++||++.+|++++|+|+||||||||+++|+|++.|++|+|.+.+.++.
T Consensus        29 ~ie~~~~~~~~-~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~   94 (337)
T 2qm8_A           29 LAESRRADHRA-AVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPS   94 (337)
T ss_dssp             HHTCSSHHHHH-HHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred             HHeeCCccccc-ChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCc
Confidence            35678888888 4567999999999999999999999999999999999999999999999988763

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=99.03  E-value=1.2e-12  Score=123.38  Aligned_cols=134  Identities=24%  Similarity=0.313  Sum_probs=84.3

Q ss_pred             EEEecceeeeCCCccccccceeeecCC-------CeEEEEcCCCCCcchhhhhhcccc----ccCCCceeEeeeccccCc
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDME-------SRVALVGPNGIGKSTFLNLLKGEL----TPNKGKVLLEKVNFGLDM  248 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~g-------e~~~i~G~nGsGKSTll~~l~gl~----~p~~G~i~~~g~~~~~~~  248 (356)
                      ++.++++..| ++..+++++++.|..|       +.++|+||||+|||||++++++.+    .+.+|.+..++.++    
T Consensus        19 lr~~~l~~~~-g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l----   93 (334)
T 1in4_A           19 LRPKSLDEFI-GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDM----   93 (334)
T ss_dssp             TSCSSGGGCC-SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHH----
T ss_pred             cCCccHHHcc-CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHH----
Confidence            4567788778 5667899999999877       899999999999999999999998    66667665443222    


Q ss_pred             CCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCC--------CH
Q psy2684         249 ESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL--------PY  317 (356)
Q Consensus       249 ~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~--------~~  317 (356)
                                       ...+..           .....|.|++|...  +.+  ++.+.+...   ...        ..
T Consensus        94 -----------------~~~~~~-----------~~~~~v~~iDE~~~--l~~--~~~e~L~~~~~~~~~~i~~~~~~~~  141 (334)
T 1in4_A           94 -----------------AAILTS-----------LERGDVLFIDEIHR--LNK--AVEELLYSAIEDFQIDIMIGKGPSA  141 (334)
T ss_dssp             -----------------HHHHHH-----------CCTTCEEEEETGGG--CCH--HHHHHHHHHHHTSCCCC--------
T ss_pred             -----------------HHHHHH-----------ccCCCEEEEcchhh--cCH--HHHHHHHHHHHhcccceeeccCccc
Confidence                             111100           01246899998752  332  455555321   111        11


Q ss_pred             HHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHH
Q psy2684         318 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA  352 (356)
Q Consensus       318 ~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA  352 (356)
                      ..+...+..+++.. ... ++..||+|++||++++
T Consensus       142 ~~i~~~l~~~~li~-at~-~~~~Ls~~l~sR~~l~  174 (334)
T 1in4_A          142 KSIRIDIQPFTLVG-ATT-RSGLLSSPLRSRFGII  174 (334)
T ss_dssp             -------CCCEEEE-EES-CGGGSCHHHHTTCSEE
T ss_pred             ccccccCCCeEEEE-ecC-CcccCCHHHHHhcCce
Confidence            22334556666654 333 5589999999998643

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.01  E-value=5.9e-11  Score=113.01  Aligned_cols=34  Identities=26%  Similarity=0.436  Sum_probs=29.7

Q ss_pred             ccccceeeecCCCeEEEEcCCCCCcchhhhhhccc
Q psy2684         195 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       195 ~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      .++++++++.+| +++|+|||||||||++.+|+..
T Consensus        13 ~~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~~a   46 (365)
T 3qf7_A           13 GLKNVDIEFQSG-ITVVEGPNGAGKSSLFEAISFA   46 (365)
T ss_dssp             TEEEEEEECCSE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred             CccceEEecCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence            456788999999 8999999999999999999844

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.95  E-value=2.8e-11  Score=112.11  Aligned_cols=112  Identities=18%  Similarity=0.104  Sum_probs=62.4

Q ss_pred             eeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeE---eeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCc
Q psy2684         201 FGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL---EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK  277 (356)
Q Consensus       201 l~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~---~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~  277 (356)
                      +++.+|++++|+||||+|||||+++|+|+..|..|+|.+   +|..++.                             ..
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~-----------------------------~~  218 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTR-----------------------------HV  218 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CC-----------------------------CC
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCccccc-----------------------------HH
Confidence            567789999999999999999999999999999999987   4332210                             00


Q ss_pred             ceeEeCCCceEEEeecCcCCCCCC--CCCHHHHHHH-------h------cC-----CCHHHHHHHHhhcCCCCccccCC
Q psy2684         278 GELRKSPRLRIGKFDQHSGEHLFP--DDTPCEYLMK-------L------FN-----LPYEKSRRQLGMFGLPSYAHTIP  337 (356)
Q Consensus       278 g~~~~~~~~~ig~~~Q~~~~~l~~--~~t~~e~~~~-------~------~~-----~~~~~~~~~L~~~~l~~~~~~~~  337 (356)
                       ....   ..+||++|.|....+.  ..++ +++..       .      .+     .+...++++|+.+++.......+
T Consensus       219 -~~~~---~~~g~v~dtpg~~~~~l~~lt~-e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y  293 (307)
T 1t9h_A          219 -ELIH---TSGGLVADTPGFSSLEFTDIEE-EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY  293 (307)
T ss_dssp             -CEEE---ETTEEEESSCSCSSCCCTTCCH-HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH
T ss_pred             -HHhh---cCCEEEecCCCccccccccCCH-HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH
Confidence             1111   1268999998533222  4566 55521       1      11     12345788999999976443323


Q ss_pred             CCCCChHHHH
Q psy2684         338 IRDLSGGQKA  347 (356)
Q Consensus       338 ~~~LSGGqkq  347 (356)
                       ..|+.|++|
T Consensus       294 -~~lls~~~~  302 (307)
T 1t9h_A          294 -VEFMTEIKD  302 (307)
T ss_dssp             -HHHHHHHHT
T ss_pred             -HHHHHHHhh
Confidence             567777776

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.95  E-value=3.2e-11  Score=112.20  Aligned_cols=64  Identities=27%  Similarity=0.355  Sum_probs=57.6

Q ss_pred             CcEEEecceeeeCCCccccccceeee-------------------cCCCeEEEEcCCCCCcchhhhhhccccc--cCCCc
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGL-------------------DMESRVALVGPNGIGKSTFLNLLKGELT--PNKGK  236 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i-------------------~~ge~~~i~G~nGsGKSTll~~l~gl~~--p~~G~  236 (356)
                      .+++++||++.|   .+++++++|.+                   .+|+++||+||||||||||+++|+|++.  |++|+
T Consensus        36 ~~i~~~~v~~~y---~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~  112 (308)
T 1sq5_A           36 EDLSLEEVAEIY---LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRR  112 (308)
T ss_dssp             TTCCHHHHHHTH---HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCC
T ss_pred             cccchHhHHHHH---HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCe
Confidence            357899999999   26899999988                   8999999999999999999999999998  99999


Q ss_pred             eeE---eeecc
Q psy2684         237 VLL---EKVNF  244 (356)
Q Consensus       237 i~~---~g~~~  244 (356)
                      |.+   +|...
T Consensus       113 i~vi~~d~~~~  123 (308)
T 1sq5_A          113 VELITTDGFLH  123 (308)
T ss_dssp             EEEEEGGGGBC
T ss_pred             EEEEecCCccC
Confidence            999   76553

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=98.90  E-value=2.9e-09  Score=98.13  Aligned_cols=75  Identities=19%  Similarity=0.150  Sum_probs=55.1

Q ss_pred             CcCCHHH-HHHHHHHHHHccCCCEEEEeCCCC---C---CCH-HHHHHHHHHH----HhcCcEEEEEecCh--h------
Q psy2684           7 KEFSGGW-RIRVSLARALFLEPTLLLLDEPTN---H---LDL-NAVIWLDNYL----QTWKKTLLVVSHDQ--S------   66 (356)
Q Consensus         7 ~~LSgGe-~~r~~la~~l~~~p~~llLDEPt~---~---LD~-~~~~~l~~~l----~~~~~tvi~vsHd~--~------   66 (356)
                      ..+|.++ ++++. |+++..+|++|||||||+   +   +|. ..+..+.+.|    ++++.|||++||+.  +      
T Consensus       128 ~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~  206 (296)
T 1cr0_A          128 AEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHE  206 (296)
T ss_dssp             CSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC---------
T ss_pred             CCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccc
Confidence            5689998 56666 999999999999999999   4   444 4444444443    55689999999995  5      


Q ss_pred             --------------HHhhhcCEEEEEeCCe
Q psy2684          67 --------------FLNNICTDIIHLDMKK   82 (356)
Q Consensus        67 --------------~l~~~~~~i~~l~~g~   82 (356)
                                    .+.+.||+|++|++|+
T Consensus       207 ~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~  236 (296)
T 1cr0_A          207 EGRPVSITDLRGSGALRQLSDTIIALERNQ  236 (296)
T ss_dssp             --------CCC---CHHHHCSEEEEEEEC-
T ss_pred             cCCCCCHHHhcccHHhHhhCcEEEEEecCc
Confidence                          7888999999998775

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=98.88  E-value=9.8e-11  Score=124.54  Aligned_cols=55  Identities=31%  Similarity=0.456  Sum_probs=43.8

Q ss_pred             CCcEEEec-----ceeeeCCCccccccceeeecC-------CCeEEEEcCCCCCcchhhhhhcccccc
Q psy2684         177 PPVLGLHD-----VTFGYPGGKVLLEKVNFGLDM-------ESRVALVGPNGIGKSTFLNLLKGELTP  232 (356)
Q Consensus       177 ~~~l~~~~-----l~~~~~~~~~~l~~~sl~i~~-------ge~~~i~G~nGsGKSTll~~l~gl~~p  232 (356)
                      .+++++++     +++.|.++..+++|++|++.+       |++++|+||||||||||++++ |++.+
T Consensus       748 ~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~  814 (1022)
T 2o8b_B          748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV  814 (1022)
T ss_dssp             CCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH
T ss_pred             CceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH
Confidence            45799999     998885556799999999987       999999999999999999999 98764

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=98.87  E-value=2.5e-09  Score=112.58  Aligned_cols=81  Identities=14%  Similarity=0.098  Sum_probs=61.2

Q ss_pred             CCCCcCCHHHHHHHHHHHHH--ccCCCEEEEeCCCCCCCHHHHHH----HHHHHHh-cCcEEEEEecChhHHhhhcCEEE
Q psy2684           4 KSTKEFSGGWRIRVSLARAL--FLEPTLLLLDEPTNHLDLNAVIW----LDNYLQT-WKKTLLVVSHDQSFLNNICTDII   76 (356)
Q Consensus         4 ~~~~~LSgGe~~r~~la~~l--~~~p~~llLDEPt~~LD~~~~~~----l~~~l~~-~~~tvi~vsHd~~~l~~~~~~i~   76 (356)
                      .....+|+|+.++..+|++|  +.+|+++||||||++||+.....    +.+.+.+ .+.+||++|||.++. .+||++.
T Consensus       717 ~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~  795 (934)
T 3thx_A          717 SQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALANQIP  795 (934)
T ss_dssp             ------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCT
T ss_pred             hHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhcccc
Confidence            44567899999999999998  99999999999999999976433    3344443 578999999996655 6899988


Q ss_pred             EEeCCeEeE
Q psy2684          77 HLDMKKLFY   85 (356)
Q Consensus        77 ~l~~g~~~~   85 (356)
                      .+.+|++..
T Consensus       796 ~v~ng~v~~  804 (934)
T 3thx_A          796 TVNNLHVTA  804 (934)
T ss_dssp             TEEEEEEEE
T ss_pred             eeEeeEEEE
Confidence            888887754

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=98.84  E-value=1.8e-10  Score=99.51  Aligned_cols=83  Identities=13%  Similarity=0.089  Sum_probs=61.0

Q ss_pred             CCCcCCHHHHHHHH-HHH---HHccCCCEEEEeC--CCCCCCHHHHHHHHHHHHhcCcEEE---EEecCh--hHHhhhcC
Q psy2684           5 STKEFSGGWRIRVS-LAR---ALFLEPTLLLLDE--PTNHLDLNAVIWLDNYLQTWKKTLL---VVSHDQ--SFLNNICT   73 (356)
Q Consensus         5 ~~~~LSgGe~~r~~-la~---~l~~~p~~llLDE--Pt~~LD~~~~~~l~~~l~~~~~tvi---~vsHd~--~~l~~~~~   73 (356)
                      +...+|+||++++. +++   |++.+|+||||||  |++++|+...+.|.++++.+..+||   .||||+  +|++++++
T Consensus        80 ~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~~~ilgti~vsh~~~~~~vd~i~~  159 (189)
T 2i3b_A           80 YVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEEIRN  159 (189)
T ss_dssp             SEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSCCTTHHHHHT
T ss_pred             EEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCCCcEEEEEeecCCCCchHHHHHHee
Confidence            34469999998884 444   5789999999999  9999999999999999997655553   556998  66666655


Q ss_pred             EEEEEeCCeEeEec-CCHH
Q psy2684          74 DIIHLDMKKLFYYK-GNFT   91 (356)
Q Consensus        74 ~i~~l~~g~~~~~~-g~~~   91 (356)
                          +++|+++... .|.+
T Consensus       160 ----~~~~~i~~~~~~nr~  174 (189)
T 2i3b_A          160 ----RKDVKVFNVTKENRN  174 (189)
T ss_dssp             ----TCCSEEEECCSSSGG
T ss_pred             ----cCCcEEEEeChHhHH
Confidence                3555554432 3443

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.82  E-value=5.3e-11  Score=114.62  Aligned_cols=68  Identities=9%  Similarity=0.069  Sum_probs=57.4

Q ss_pred             CCHH--HHHHHHHHHHHcc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHhc------------CcEEEEEecC
Q psy2684           9 FSGG--WRIRVSLARALFL----------EPTLLLLDEPTNHLDLNAVIWLDNYLQTW------------KKTLLVVSHD   64 (356)
Q Consensus         9 LSgG--e~~r~~la~~l~~----------~p~~llLDEPt~~LD~~~~~~l~~~l~~~------------~~tvi~vsHd   64 (356)
                      ||||  |+||+.||++|+.          +||+++|||||++||+.++..+.+.++++            ..+|++.||+
T Consensus       155 lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~  234 (413)
T 1tq4_A          155 ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKN  234 (413)
T ss_dssp             EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTC
T ss_pred             eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCc
Confidence            8999  9999999999999          99999999999999998877665555443            1457778899


Q ss_pred             hhH--HhhhcCEEE
Q psy2684          65 QSF--LNNICTDII   76 (356)
Q Consensus        65 ~~~--l~~~~~~i~   76 (356)
                      .+.  ++.+||+|.
T Consensus       235 l~~~~~e~L~d~I~  248 (413)
T 1tq4_A          235 VCHYDFPVLMDKLI  248 (413)
T ss_dssp             TTSTTHHHHHHHHH
T ss_pred             CCccCHHHHHHHHH
Confidence            887  888888884

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.81  E-value=1.2e-10  Score=118.01  Aligned_cols=98  Identities=17%  Similarity=0.214  Sum_probs=51.9

Q ss_pred             cEEEecceeeeCCC-ccccccc----------eeeecCCCeEEEEcCCCCCcchhhhhhcccccc-CCCceeEeeecccc
Q psy2684         179 VLGLHDVTFGYPGG-KVLLEKV----------NFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-NKGKVLLEKVNFGL  246 (356)
Q Consensus       179 ~l~~~~l~~~~~~~-~~~l~~~----------sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p-~~G~i~~~g~~~~~  246 (356)
                      .+.++|+++.|+.. +++++.+          +|+++.   ++|+||||||||||+++|+|+..| ++|.|.++|.++..
T Consensus        10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~   86 (608)
T 3szr_A           10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL   86 (608)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence            57888999999422 2344444          355654   999999999999999999999989 79999999887532


Q ss_pred             CcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHH
Q psy2684         247 DMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM  310 (356)
Q Consensus       247 ~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~  310 (356)
                      ...                         +.    ....+..+||++|++  .+++..++.+++.
T Consensus        87 ~~~-------------------------~~----~~~~~~~i~~v~Q~~--~l~~~~tv~e~i~  119 (608)
T 3szr_A           87 KKL-------------------------VN----EDKWRGKVSYQDYEI--EISDASEVEKEIN  119 (608)
T ss_dssp             EEC-------------------------SS----SSCCEEEESCC---C--CCCCHHHHHTTHH
T ss_pred             ecC-------------------------Cc----cccceeEEeeecccc--cCCCHHHHHHHHH
Confidence            100                         00    011235799999986  3666667766653

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.80  E-value=1.1e-09  Score=107.08  Aligned_cols=49  Identities=24%  Similarity=0.302  Sum_probs=45.4

Q ss_pred             cccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc
Q psy2684         196 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF  244 (356)
Q Consensus       196 l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~  244 (356)
                      -+++||++.+|++++|+|+||||||||+++|+|+++|++|+|.+.+.+.
T Consensus       283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~  331 (503)
T 2yhs_A          283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT  331 (503)
T ss_dssp             BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCT
T ss_pred             CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcc
Confidence            4689999999999999999999999999999999999999999987554

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.77  E-value=2.3e-09  Score=95.20  Aligned_cols=37  Identities=22%  Similarity=0.172  Sum_probs=22.9

Q ss_pred             cccccceeeecCCCeEEEEcCCCCCcchhhhhhc-ccc
Q psy2684         194 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK-GEL  230 (356)
Q Consensus       194 ~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~-gl~  230 (356)
                      ...+++||++.+|++++|+||||||||||+++|+ |++
T Consensus        15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             -------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred             cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            3578899999999999999999999999999999 998

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=98.76  E-value=2e-09  Score=93.99  Aligned_cols=36  Identities=25%  Similarity=0.349  Sum_probs=26.4

Q ss_pred             cccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc
Q psy2684         194 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT  231 (356)
Q Consensus       194 ~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~  231 (356)
                      +++++  .+|++|++++|+||||||||||+++|+|+++
T Consensus        10 ~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           10 PTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             -----------CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             cCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            46666  6899999999999999999999999999985

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=98.75  E-value=1.9e-10  Score=102.09  Aligned_cols=57  Identities=26%  Similarity=0.275  Sum_probs=42.9

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF  244 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~  244 (356)
                      .|+++|+...| +.       +|++.+ ++++|+||||||||||+++|+|++.|++|.|.++|.++
T Consensus         9 ~l~l~~~~~~~-~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~   65 (227)
T 1qhl_A            9 SLTLINWNGFF-AR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE   65 (227)
T ss_dssp             EEEEEEETTEE-EE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred             EEEEEeeeccc-CC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence            47888887766 21       456666 89999999999999999999999999999999998776

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=98.74  E-value=1.2e-08  Score=89.71  Aligned_cols=75  Identities=12%  Similarity=0.108  Sum_probs=58.8

Q ss_pred             cCCHHHHHHHHHHHHHccCCC--EEEEeCCCCCC--CHHHHHHH----HHHHHhcCcEEEEEecCh--------hHHhhh
Q psy2684           8 EFSGGWRIRVSLARALFLEPT--LLLLDEPTNHL--DLNAVIWL----DNYLQTWKKTLLVVSHDQ--------SFLNNI   71 (356)
Q Consensus         8 ~LSgGe~~r~~la~~l~~~p~--~llLDEPt~~L--D~~~~~~l----~~~l~~~~~tvi~vsHd~--------~~l~~~   71 (356)
                      ..|.++.++...+.+...+|+  ++||||||+.+  |+.....+    .++.++.+.|||+++|+.        ..+.++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~  182 (235)
T 2w0m_A          103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHV  182 (235)
T ss_dssp             SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHH
T ss_pred             CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchhee
Confidence            458999998888888888999  99999999888  98665444    444455688999999999        558889


Q ss_pred             cCEEEEEeCCe
Q psy2684          72 CTDIIHLDMKK   82 (356)
Q Consensus        72 ~~~i~~l~~g~   82 (356)
                      ||+|++|+...
T Consensus       183 ~d~vi~l~~~~  193 (235)
T 2w0m_A          183 ADGIIRFRRMI  193 (235)
T ss_dssp             CSEEEEEEEEE
T ss_pred             eeEEEEEEEEe
Confidence            99999998643

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=98.74  E-value=3.7e-09  Score=91.14  Aligned_cols=37  Identities=30%  Similarity=0.497  Sum_probs=34.2

Q ss_pred             CCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc
Q psy2684         206 ESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF  244 (356)
Q Consensus       206 ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~  244 (356)
                      |++++|+||||||||||+++|+|+++ ++| |.++|.+.
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~   37 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYT   37 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEEC
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEec
Confidence            78999999999999999999999999 999 99987654

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.73  E-value=2e-09  Score=93.26  Aligned_cols=40  Identities=15%  Similarity=0.346  Sum_probs=30.8

Q ss_pred             eeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeec
Q psy2684         200 NFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN  243 (356)
Q Consensus       200 sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~  243 (356)
                      |+++.+|++++|+||||||||||+++|+|+++    .+.+.+..
T Consensus         1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~   40 (205)
T 3tr0_A            1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISH   40 (205)
T ss_dssp             ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCE
T ss_pred             CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEecee
Confidence            57788999999999999999999999999963    45555543

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.73  E-value=1.8e-09  Score=104.02  Aligned_cols=48  Identities=25%  Similarity=0.320  Sum_probs=39.9

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCe--EEEEcCCCCCcchhhhhhcccc
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~--~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      +++.+ ++.| ++.+ ++++||+|.+|++  ++|+||||||||||+++|+|+.
T Consensus        17 l~~~~-~~~y-~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~   66 (427)
T 2qag_B           17 VPLAG-HVGF-DSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK   66 (427)
T ss_dssp             CCCCC-CC-C-C--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred             EEEee-EEEE-CCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence            56666 8888 5556 9999999999999  9999999999999999999984

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=98.72  E-value=1.1e-09  Score=102.71  Aligned_cols=67  Identities=18%  Similarity=0.187  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEEeCCe
Q psy2684          11 GGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMKK   82 (356)
Q Consensus        11 gGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l~~g~   82 (356)
                      |||+||++||++|..+|++|||||||+   .+..+.|.. +..-+.|+|+++|+.+ +...|||+++|.+|.
T Consensus       225 gg~~~r~~la~aL~~~p~ilildE~~~---~e~~~~l~~-~~~g~~tvi~t~H~~~-~~~~~dri~~l~~g~  291 (330)
T 2pt7_A          225 GNITSADCLKSCLRMRPDRIILGELRS---SEAYDFYNV-LCSGHKGTLTTLHAGS-SEEAFIRLANMSSSN  291 (330)
T ss_dssp             TTBCHHHHHHHHTTSCCSEEEECCCCS---THHHHHHHH-HHTTCCCEEEEEECSS-HHHHHHHHHHHHHTS
T ss_pred             CChhHHHHHHHHhhhCCCEEEEcCCCh---HHHHHHHHH-HhcCCCEEEEEEcccH-HHHHhhhheehhcCC
Confidence            899999999999999999999999998   233333333 3322347999999998 667799999998765

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=98.70  E-value=1.8e-08  Score=105.80  Aligned_cols=64  Identities=19%  Similarity=0.170  Sum_probs=51.1

Q ss_pred             CCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH-HH---H-HhcCcEEEEEecChhHH
Q psy2684           4 KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLD-NY---L-QTWKKTLLVVSHDQSFL   68 (356)
Q Consensus         4 ~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~-~~---l-~~~~~tvi~vsHd~~~l   68 (356)
                      +..+++|+|+++++.++++ +.+|+++||||||++||+.....+. .+   + ++.+.|||++|||.++.
T Consensus       731 ~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~  799 (918)
T 3thx_B          731 KGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC  799 (918)
T ss_dssp             ---CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred             HhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH
Confidence            4578899999999999998 8999999999999999998654432 33   3 33578999999998765

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.69  E-value=1.5e-09  Score=97.77  Aligned_cols=53  Identities=21%  Similarity=0.244  Sum_probs=36.0

Q ss_pred             CcEEEecc-eeeeCCCccccccceeeecC---CCeEEEEcCCCCCcchhhhhhcccc
Q psy2684         178 PVLGLHDV-TFGYPGGKVLLEKVNFGLDM---ESRVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       178 ~~l~~~~l-~~~~~~~~~~l~~~sl~i~~---ge~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      ++++++|+ ++.|.++..+|+++||+|.+   |++++|+|++||||||+.++|++.+
T Consensus        16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            47899999 99994456799999999999   9999999999999999999999854

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=98.68  E-value=9.8e-11  Score=108.23  Aligned_cols=47  Identities=21%  Similarity=0.080  Sum_probs=42.6

Q ss_pred             ccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccc
Q psy2684         197 EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFG  245 (356)
Q Consensus       197 ~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~  245 (356)
                      ++++|+  +|++++|+|+||+||||++..|++.+.+..|+|.+.+.++.
T Consensus        91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~  137 (295)
T 1ls1_A           91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ  137 (295)
T ss_dssp             CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred             ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcc
Confidence            567777  89999999999999999999999999999999999887753

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=98.68  E-value=4.5e-09  Score=108.61  Aligned_cols=56  Identities=21%  Similarity=0.230  Sum_probs=42.5

Q ss_pred             cEEEecceeee-C-CCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc-cCCCce
Q psy2684         179 VLGLHDVTFGY-P-GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-PNKGKV  237 (356)
Q Consensus       179 ~l~~~~l~~~~-~-~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~-p~~G~i  237 (356)
                      .+.+++...-. . ++..+++|+||+   |++++|+||||||||||+++++|+.. +..|.+
T Consensus       550 ~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~  608 (765)
T 1ewq_A          550 RLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSF  608 (765)
T ss_dssp             SEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCC
T ss_pred             cEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCce
Confidence            35666653211 0 235689999998   99999999999999999999999874 555543

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=98.67  E-value=2.4e-08  Score=106.30  Aligned_cols=78  Identities=13%  Similarity=0.024  Sum_probs=61.1

Q ss_pred             CCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH-HHH---HHHHHHh-cCcEEEEEecChhHHhhhcCEEEEEe
Q psy2684           5 STKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA-VIW---LDNYLQT-WKKTLLVVSHDQSFLNNICTDIIHLD   79 (356)
Q Consensus         5 ~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~-~~~---l~~~l~~-~~~tvi~vsHd~~~l~~~~~~i~~l~   79 (356)
                      ..+++|+++++ +++|++++.+|+++||||||+++|+.. ...   +.+.+.+ .+.++|++|||.+++..+||++++++
T Consensus       848 ~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~~  926 (1022)
T 2o8b_B          848 GESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRL  926 (1022)
T ss_dssp             --CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEEE
T ss_pred             chhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceeec
Confidence            34667776664 999999999999999999999999875 332   3333333 37899999999999999999998875


Q ss_pred             CCeEe
Q psy2684          80 MKKLF   84 (356)
Q Consensus        80 ~g~~~   84 (356)
                       |++.
T Consensus       927 -g~~~  930 (1022)
T 2o8b_B          927 -GHMA  930 (1022)
T ss_dssp             -EEEE
T ss_pred             -CeEE
Confidence             6665

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.66  E-value=5e-09  Score=92.49  Aligned_cols=43  Identities=16%  Similarity=0.186  Sum_probs=35.1

Q ss_pred             eeecCCCeEEEEcCCCCCcchhhhhhcccccc--CCCceeEeeec
Q psy2684         201 FGLDMESRVALVGPNGIGKSTFLNLLKGELTP--NKGKVLLEKVN  243 (356)
Q Consensus       201 l~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p--~~G~i~~~g~~  243 (356)
                      -.+++|++++|+||||||||||+++|+|+++|  ..|.|.+.+.+
T Consensus        11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~   55 (219)
T 1s96_A           11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQ   55 (219)
T ss_dssp             ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSC
T ss_pred             ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCC
Confidence            45789999999999999999999999999986  67888777644

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.65  E-value=5.6e-09  Score=96.68  Aligned_cols=74  Identities=14%  Similarity=0.195  Sum_probs=61.8

Q ss_pred             CCCCcCCHHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEec---------ChhHHhhhc
Q psy2684           4 KSTKEFSGGWRIRVSLARALFLEPT--LLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSH---------DQSFLNNIC   72 (356)
Q Consensus         4 ~~~~~LSgGe~~r~~la~~l~~~p~--~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsH---------d~~~l~~~~   72 (356)
                      +.+.+||   +||++||++|+.+|+  +|+|| ||++||+...  +.++.+..+.|+|++||         .+..+..+.
T Consensus       200 ~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~--~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~  273 (302)
T 3b9q_A          200 SLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ--AREFNEVVGITGLILTKLDGSARGGCVVSVVEELG  273 (302)
T ss_dssp             HHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH--HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHC
T ss_pred             HHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH--HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHC
Confidence            4466788   999999999999999  99999 9999998764  34555567899999999         556667778


Q ss_pred             CEEEEEeCCeE
Q psy2684          73 TDIIHLDMKKL   83 (356)
Q Consensus        73 ~~i~~l~~g~~   83 (356)
                      ..|.++..|+.
T Consensus       274 ~pi~~i~~Ge~  284 (302)
T 3b9q_A          274 IPVKFIGVGEA  284 (302)
T ss_dssp             CCEEEEECSSS
T ss_pred             CCEEEEeCCCC
Confidence            89999998864

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=98.64  E-value=3e-10  Score=99.24  Aligned_cols=71  Identities=11%  Similarity=-0.005  Sum_probs=54.8

Q ss_pred             CCHHHHHHHHHHH---HHccCCCEEEEeCCCCCC----CHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684           9 FSGGWRIRVSLAR---ALFLEPTLLLLDEPTNHL----DLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         9 LSgGe~~r~~la~---~l~~~p~~llLDEPt~~L----D~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      ++|.+..+-....   +|+.+|++++|||||++|    |+..+..+.+++++    .+.|||+||||++++..+||+|++
T Consensus       121 ~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~  200 (207)
T 1znw_A          121 LAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLV  200 (207)
T ss_dssp             HHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHH
Confidence            4455544444444   789999999999999998    67777777666554    357999999999999999999999


Q ss_pred             Ee
Q psy2684          78 LD   79 (356)
Q Consensus        78 l~   79 (356)
                      |.
T Consensus       201 l~  202 (207)
T 1znw_A          201 GT  202 (207)
T ss_dssp             --
T ss_pred             hc
Confidence            84

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=98.60  E-value=7.9e-09  Score=102.34  Aligned_cols=50  Identities=22%  Similarity=0.292  Sum_probs=47.2

Q ss_pred             cccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeec
Q psy2684         194 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN  243 (356)
Q Consensus       194 ~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~  243 (356)
                      .+++++++.+.+|+.++|+||||||||||+++|+|+++|++|.|.++|..
T Consensus       248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~  297 (511)
T 2oap_1          248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR  297 (511)
T ss_dssp             HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred             HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence            47889999999999999999999999999999999999999999998865

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.59  E-value=1.6e-08  Score=97.48  Aligned_cols=51  Identities=25%  Similarity=0.277  Sum_probs=40.6

Q ss_pred             CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCC
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG  235 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G  235 (356)
                      .++.++|+++.| +++.+++++||+|      +|+|+||||||||+++|+|...|..|
T Consensus        10 ~~l~~~~l~~~y-~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~   60 (418)
T 2qag_C           10 GYVGFANLPNQV-YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE   60 (418)
T ss_dssp             -----CCCCCCT-TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC
T ss_pred             CcEEEEecceeE-CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC
Confidence            468999999999 5678999999998      99999999999999999999875443

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=98.58  E-value=4.5e-08  Score=101.13  Aligned_cols=64  Identities=25%  Similarity=0.129  Sum_probs=55.5

Q ss_pred             CCcCCHHHHHHHHHHHHH--ccCCCEEEEeCC---CCCCCHHHHH-HHHHHHHhcCcEEEEEecChhHHh
Q psy2684           6 TKEFSGGWRIRVSLARAL--FLEPTLLLLDEP---TNHLDLNAVI-WLDNYLQTWKKTLLVVSHDQSFLN   69 (356)
Q Consensus         6 ~~~LSgGe~~r~~la~~l--~~~p~~llLDEP---t~~LD~~~~~-~l~~~l~~~~~tvi~vsHd~~~l~   69 (356)
                      ...+|+|+++++.+++++  +.+|+++|||||   |++||+.++. .+.+.+.+.+.++|++|||.++..
T Consensus       633 ~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~  702 (765)
T 1ewq_A          633 AGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA  702 (765)
T ss_dssp             --CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred             HhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence            346899999999999999  999999999999   9999998864 477777777889999999988764

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=98.58  E-value=1.2e-08  Score=93.94  Aligned_cols=49  Identities=22%  Similarity=0.241  Sum_probs=44.4

Q ss_pred             ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCC-ceeEee
Q psy2684         193 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG-KVLLEK  241 (356)
Q Consensus       193 ~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G-~i~~~g  241 (356)
                      ..+|+++++.+.+|++++|+||||||||||++.++|...|.+| .|.+.+
T Consensus        22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~   71 (296)
T 1cr0_A           22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM   71 (296)
T ss_dssp             CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred             HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence            3579999999999999999999999999999999999999988 776654

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=98.56  E-value=1.4e-08  Score=84.89  Aligned_cols=68  Identities=22%  Similarity=0.213  Sum_probs=51.0

Q ss_pred             eEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCC-c-----eEEEeecCcCCCCCCCCCHHHHH
Q psy2684         238 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR-L-----RIGKFDQHSGEHLFPDDTPCEYL  309 (356)
Q Consensus       238 ~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~-~-----~ig~~~Q~~~~~l~~~~t~~e~~  309 (356)
                      .+++.++.+..++.++++||||||||||+++|+|.+ |.+|.+..... .     ...|++|++.  ++ .+|+.+++
T Consensus        22 ~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~q~~~--l~-~ltv~e~l   95 (158)
T 1htw_A           22 AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMIYHFD--LY-RLADPEEL   95 (158)
T ss_dssp             HHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETTEEEEEEE--CT-TCSCTTHH
T ss_pred             HHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCCcceeccc--cc-cCCcHHHH
Confidence            345677788899999999999999999999999999 88887653211 0     0126888863  56 77776665

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.56  E-value=2e-08  Score=94.88  Aligned_cols=74  Identities=14%  Similarity=0.195  Sum_probs=61.3

Q ss_pred             CCCCcCCHHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEec---------ChhHHhhhc
Q psy2684           4 KSTKEFSGGWRIRVSLARALFLEPT--LLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSH---------DQSFLNNIC   72 (356)
Q Consensus         4 ~~~~~LSgGe~~r~~la~~l~~~p~--~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsH---------d~~~l~~~~   72 (356)
                      +.+.+||   +||++||++|+.+|+  +|+|| ||++||+...  +..+.+..+.|+|++||         .+..+....
T Consensus       257 ~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~--~~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~  330 (359)
T 2og2_A          257 SLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ--AREFNEVVGITGLILTKLDGSARGGCVVSVVEELG  330 (359)
T ss_dssp             HHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHH--HHHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHC
T ss_pred             hHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHH--HHHHHHhcCCeEEEEecCcccccccHHHHHHHHhC
Confidence            4466788   999999999999999  99999 9999998765  34555567899999999         455666778


Q ss_pred             CEEEEEeCCeE
Q psy2684          73 TDIIHLDMKKL   83 (356)
Q Consensus        73 ~~i~~l~~g~~   83 (356)
                      ..|.++..|..
T Consensus       331 ~pI~~ig~Ge~  341 (359)
T 2og2_A          331 IPVKFIGVGEA  341 (359)
T ss_dssp             CCEEEEECSSS
T ss_pred             CCEEEEeCCCC
Confidence            89999988864

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.55  E-value=6.7e-09  Score=90.06  Aligned_cols=61  Identities=21%  Similarity=0.248  Sum_probs=47.5

Q ss_pred             ecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCce--eEeeeccc
Q psy2684         183 HDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV--LLEKVNFG  245 (356)
Q Consensus       183 ~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i--~~~g~~~~  245 (356)
                      +|+++.+ +.....+..++...+|++++|+|||||||||++++|++.+. ..|.+  ++++.++.
T Consensus         3 ~~~~~~~-~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~   65 (200)
T 3uie_A            3 TNIKWHE-CSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR   65 (200)
T ss_dssp             --------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred             CCCcccc-cccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence            3566655 45567788888899999999999999999999999999998 78988  88887663

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=98.55  E-value=1.4e-08  Score=96.85  Aligned_cols=59  Identities=14%  Similarity=0.186  Sum_probs=46.3

Q ss_pred             ccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccC-CCceeEeeeccccCcCCeeeee
Q psy2684         195 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN-KGKVLLEKVNFGLDMESRVALV  255 (356)
Q Consensus       195 ~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~-~G~i~~~g~~~~~~~~~~ialv  255 (356)
                      +|++++  +.+|++++|+||||||||||+++|+|+++|+ +|.|.+.+.++.......++++
T Consensus       127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v  186 (372)
T 2ewv_A          127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIV  186 (372)
T ss_dssp             SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEE
T ss_pred             HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEE
Confidence            566654  7899999999999999999999999999998 8999887765543223333433

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.53  E-value=2.1e-08  Score=93.76  Aligned_cols=44  Identities=23%  Similarity=0.192  Sum_probs=40.8

Q ss_pred             eecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccc
Q psy2684         202 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFG  245 (356)
Q Consensus       202 ~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~  245 (356)
                      ...+|++++|+|||||||||+++.|+|+++|++|+|.+.+.++.
T Consensus       125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~  168 (328)
T 3e70_C          125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTF  168 (328)
T ss_dssp             SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeeccc
Confidence            44789999999999999999999999999999999999998763

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=98.52  E-value=8.7e-09  Score=90.72  Aligned_cols=31  Identities=19%  Similarity=0.339  Sum_probs=28.9

Q ss_pred             eecCCCeEEEEcCCCCCcchhhhhhcccccc
Q psy2684         202 GLDMESRVALVGPNGIGKSTFLNLLKGELTP  232 (356)
Q Consensus       202 ~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p  232 (356)
                      .|++|++++|+||||||||||+++|+|.+.+
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~   51 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQL   51 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            6899999999999999999999999997665

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=98.52  E-value=1.2e-08  Score=107.23  Aligned_cols=38  Identities=21%  Similarity=0.323  Sum_probs=35.1

Q ss_pred             CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccc
Q psy2684         192 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       192 ~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      +..+++|++|++.+|++++|+|||||||||||++++++
T Consensus       659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i  696 (918)
T 3thx_B          659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALI  696 (918)
T ss_dssp             SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred             CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence            45789999999999999999999999999999998764

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=98.52  E-value=1.7e-07  Score=85.47  Aligned_cols=64  Identities=11%  Similarity=0.065  Sum_probs=47.1

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCC--CCCHHH---H----HHHHHHHHhcCcEEEEEecChhHHh
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTN--HLDLNA---V----IWLDNYLQTWKKTLLVVSHDQSFLN   69 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~--~LD~~~---~----~~l~~~l~~~~~tvi~vsHd~~~l~   69 (356)
                      ++++..||+|+.+++   ++++.+|+++||||||+  ++|...   .    ..|.++.++.+.|||+|+|+.....
T Consensus       113 ~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~~  185 (279)
T 1nlf_A          113 GSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGAA  185 (279)
T ss_dssp             TSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-----
T ss_pred             CCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCccc
Confidence            567899999997765   57788999999999999  899732   2    3344555567899999999987653

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.51  E-value=1.1e-08  Score=98.61  Aligned_cols=36  Identities=25%  Similarity=0.351  Sum_probs=33.4

Q ss_pred             cccceeeecCCCeEEEEcCCCCCcchhhhhhccccc
Q psy2684         196 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT  231 (356)
Q Consensus       196 l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~  231 (356)
                      -++++|+++.|+.++|+|+||||||||+++|++..+
T Consensus       147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~  182 (416)
T 1udx_A          147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP  182 (416)
T ss_dssp             EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC
T ss_pred             EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc
Confidence            478999999999999999999999999999999843

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=98.51  E-value=8.7e-09  Score=97.94  Aligned_cols=46  Identities=20%  Similarity=0.265  Sum_probs=42.4

Q ss_pred             ccccceeeecC--CCeEEEEcCCCCCcchhhhhhccccccCC----CceeEe
Q psy2684         195 LLEKVNFGLDM--ESRVALVGPNGIGKSTFLNLLKGELTPNK----GKVLLE  240 (356)
Q Consensus       195 ~l~~~sl~i~~--ge~~~i~G~nGsGKSTll~~l~gl~~p~~----G~i~~~  240 (356)
                      ....|+++|.+  |++++|+||||||||||+++|+|++.|++    |.++++
T Consensus       157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~  208 (365)
T 1lw7_A          157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVF  208 (365)
T ss_dssp             GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHH
T ss_pred             ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHH
Confidence            35679999999  99999999999999999999999999999    888774

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=98.51  E-value=7.5e-08  Score=84.64  Aligned_cols=57  Identities=18%  Similarity=0.193  Sum_probs=40.7

Q ss_pred             cCCCEEEEeCCCCCCCHH----------------HHHHHHHHHHhcCcEEEEEec----ChhHHhhhcCEEEEEeCC
Q psy2684          25 LEPTLLLLDEPTNHLDLN----------------AVIWLDNYLQTWKKTLLVVSH----DQSFLNNICTDIIHLDMK   81 (356)
Q Consensus        25 ~~p~~llLDEPt~~LD~~----------------~~~~l~~~l~~~~~tvi~vsH----d~~~l~~~~~~i~~l~~g   81 (356)
                      .+|++++|||||+.||+.                -...|.++.++.+.|||+|||    +-..+...||++++|++|
T Consensus       124 ~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~  200 (231)
T 4a74_A          124 RPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG  200 (231)
T ss_dssp             SCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred             CceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence            499999999999999983                123345555667899999999    444588999999999865

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.50  E-value=2.6e-07  Score=80.53  Aligned_cols=75  Identities=19%  Similarity=0.125  Sum_probs=57.8

Q ss_pred             CcCCHHH--HHHHHHHHHHccC-CCEEEEeCCCCCCCHHH------------HHHHHHHHHhcCcEEEEEecChh-----
Q psy2684           7 KEFSGGW--RIRVSLARALFLE-PTLLLLDEPTNHLDLNA------------VIWLDNYLQTWKKTLLVVSHDQS-----   66 (356)
Q Consensus         7 ~~LSgGe--~~r~~la~~l~~~-p~~llLDEPt~~LD~~~------------~~~l~~~l~~~~~tvi~vsHd~~-----   66 (356)
                      ..+|+++  ++++..+++++.+ |+++|+||||+.+|+..            ...|.++.++++.|||+++|...     
T Consensus        83 ~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~  162 (220)
T 2cvh_A           83 FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTE  162 (220)
T ss_dssp             ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTS
T ss_pred             EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCC
Confidence            3556664  5677788889886 99999999999999632            12255566667899999999865     


Q ss_pred             --------HHhhhcCEEEEEeCC
Q psy2684          67 --------FLNNICTDIIHLDMK   81 (356)
Q Consensus        67 --------~l~~~~~~i~~l~~g   81 (356)
                              .+...||.+++|+..
T Consensus       163 ~~~p~~~~~~~~~~d~vi~l~~~  185 (220)
T 2cvh_A          163 MTKPVAEQTLGYRCKDILRLDKL  185 (220)
T ss_dssp             SCCSCCCHHHHHTSSEEEEEEEC
T ss_pred             ccccCCCcceeecCcEEEEEEEe
Confidence                    577899999999754

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.48  E-value=2.6e-08  Score=86.39  Aligned_cols=28  Identities=43%  Similarity=0.526  Sum_probs=24.1

Q ss_pred             cCCCeEEEEcCCCCCcchhhhhhccccc
Q psy2684         204 DMESRVALVGPNGIGKSTFLNLLKGELT  231 (356)
Q Consensus       204 ~~ge~~~i~G~nGsGKSTll~~l~gl~~  231 (356)
                      .+|++++|+||||||||||+++|+|+++
T Consensus         2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            5799999999999999999999999886

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.47  E-value=2.1e-08  Score=87.56  Aligned_cols=42  Identities=31%  Similarity=0.355  Sum_probs=36.6

Q ss_pred             ecCCCeEEEEcCCCCCcchhhhhhccccccC---CCceeEeeecc
Q psy2684         203 LDMESRVALVGPNGIGKSTFLNLLKGELTPN---KGKVLLEKVNF  244 (356)
Q Consensus       203 i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~---~G~i~~~g~~~  244 (356)
                      ..+|++++|+||||||||||+++|+|++.|.   .|.|.++|..+
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~   63 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL   63 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC
Confidence            4689999999999999999999999999964   67787777655

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.44  E-value=8.8e-08  Score=81.38  Aligned_cols=40  Identities=30%  Similarity=0.269  Sum_probs=36.3

Q ss_pred             ccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCce
Q psy2684         197 EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV  237 (356)
Q Consensus       197 ~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i  237 (356)
                      ++++|++.+| +++|+|||||||||++++|.+++.+..|..
T Consensus        18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~   57 (182)
T 3kta_A           18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKA   57 (182)
T ss_dssp             SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGG
T ss_pred             ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccc
Confidence            6788999998 999999999999999999999998877654

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.43  E-value=6.9e-08  Score=87.43  Aligned_cols=59  Identities=17%  Similarity=0.130  Sum_probs=50.4

Q ss_pred             HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEEe
Q psy2684          16 RVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLD   79 (356)
Q Consensus        16 r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l~   79 (356)
                      +++||++|..+|++|||||||   |++++..+.+.. ..+.+||+++|+.+ +...|||+++|.
T Consensus        88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~l~~~-~~g~~vl~t~H~~~-~~~~~dri~~l~  146 (261)
T 2eyu_A           88 ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLHTNT-AIDTIHRIVDIF  146 (261)
T ss_dssp             HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEECCSS-HHHHHHHHHHTS
T ss_pred             HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHHHH-ccCCEEEEEeCcch-HHHHHHHHhhhc
Confidence            899999999999999999999   999877665554 45789999999988 557789988774

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.42  E-value=7.9e-08  Score=90.90  Aligned_cols=43  Identities=26%  Similarity=0.225  Sum_probs=36.1

Q ss_pred             eecCCCeEEEEcCCCCCcchhhhhhccccccC-CCceeEeeecc
Q psy2684         202 GLDMESRVALVGPNGIGKSTFLNLLKGELTPN-KGKVLLEKVNF  244 (356)
Q Consensus       202 ~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~-~G~i~~~g~~~  244 (356)
                      .+.+|++++|+||||||||||+++++|++.|+ .|.|...+.++
T Consensus       119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~  162 (356)
T 3jvv_A          119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI  162 (356)
T ss_dssp             HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC
T ss_pred             HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH
Confidence            67889999999999999999999999999998 56665544333

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=98.39  E-value=2.1e-07  Score=84.86  Aligned_cols=102  Identities=17%  Similarity=0.064  Sum_probs=63.0

Q ss_pred             eecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeE
Q psy2684         202 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR  281 (356)
Q Consensus       202 ~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~  281 (356)
                      .+.+|++++|+||||||||||++.+++...  .|.+.+ |.+.                                     
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~-g~~~-------------------------------------   65 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLL-EVGE-------------------------------------   65 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTT-CCCC-------------------------------------
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcC-CCcc-------------------------------------
Confidence            478999999999999999999999998665  454422 1110                                     


Q ss_pred             eCCCceEEEeecCcCCCCCCCCCHHHHHHH-hcCCCHHHHHHHHhhcCCCCccccCCCCCCChHHHHHHH
Q psy2684         282 KSPRLRIGKFDQHSGEHLFPDDTPCEYLMK-LFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVA  350 (356)
Q Consensus       282 ~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~-~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRva  350 (356)
                       ....++.|+..+..  .   ..+...+.. ...........+++.+++.+... +++..||+||.+++.
T Consensus        66 -~~~~~v~~~~~e~~--~---~~~~~r~~~~g~~~~~~~~~~~~~~l~l~~~~~-~~~~~ls~g~~~~i~  128 (279)
T 1nlf_A           66 -LPTGPVIYLPAEDP--P---TAIHHRLHALGAHLSAEERQAVADGLLIQPLIG-SLPNIMAPEWFDGLK  128 (279)
T ss_dssp             -CCCCCEEEEESSSC--H---HHHHHHHHHHHTTSCHHHHHHHHHHEEECCCTT-SCCCTTSHHHHHHHH
T ss_pred             -CCCccEEEEECCCC--H---HHHHHHHHHHHhhcChhhhhhccCceEEeecCC-CCcccCCHHHHHHHH
Confidence             00124666654321  0   011112211 12234445566788888876554 367899999988864

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=98.38  E-value=9e-08  Score=84.09  Aligned_cols=52  Identities=19%  Similarity=0.235  Sum_probs=45.8

Q ss_pred             Ccccccccee-eecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeec
Q psy2684         192 GKVLLEKVNF-GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN  243 (356)
Q Consensus       192 ~~~~l~~~sl-~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~  243 (356)
                      +.+.|+++.+ .+++|++++|+||||||||||++.+++...+..|.+.+.+.+
T Consensus         8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~   60 (235)
T 2w0m_A            8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE   60 (235)
T ss_dssp             SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred             CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence            4457888887 899999999999999999999999999999888988886543

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=98.38  E-value=1.5e-09  Score=100.31  Aligned_cols=67  Identities=12%  Similarity=0.013  Sum_probs=53.8

Q ss_pred             CCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEEeCCeEeE
Q psy2684           6 TKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFY   85 (356)
Q Consensus         6 ~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l~~g~~~~   85 (356)
                      ...||||||||   ||+|+.+|+|||    |++||+.+...+..           +||+...+ ..||+| +|++|+++.
T Consensus       198 g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~-----------ltH~~~~~-~~aD~i-vl~~G~iv~  257 (305)
T 2v9p_A          198 GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY-----------LHSRVQTF-RFEQPC-TDESGEQPF  257 (305)
T ss_dssp             TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG-----------GTTTEEEE-ECCCCC-CCC---CCC
T ss_pred             ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH-----------HhCCHHHH-HhCCEE-EEeCCEEEE
Confidence            46899999999   999999999999    99999988766642           29998876 579999 999999985


Q ss_pred             ecCCHHHH
Q psy2684          86 YKGNFTLF   93 (356)
Q Consensus        86 ~~g~~~~~   93 (356)
                       .|+.+.+
T Consensus       258 -~g~~~el  264 (305)
T 2v9p_A          258 -NITDADW  264 (305)
T ss_dssp             -CCCHHHH
T ss_pred             -eCCHHHH
Confidence             5776654

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=98.34  E-value=2.3e-07  Score=86.41  Aligned_cols=39  Identities=28%  Similarity=0.365  Sum_probs=35.9

Q ss_pred             CeEEEEcCCCCCcchhhhhhcccc--------ccCCCceeEeeeccc
Q psy2684         207 SRVALVGPNGIGKSTFLNLLKGEL--------TPNKGKVLLEKVNFG  245 (356)
Q Consensus       207 e~~~i~G~nGsGKSTll~~l~gl~--------~p~~G~i~~~g~~~~  245 (356)
                      ++++|+|+||||||||++.|.|+.        .|+.|+|.++|..+.
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~   51 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIG   51 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEEC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHh
Confidence            478999999999999999999997        889999999998775

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=98.28  E-value=2.5e-09  Score=94.25  Aligned_cols=45  Identities=9%  Similarity=0.042  Sum_probs=38.6

Q ss_pred             cCCHHHHHHHHH-----HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy2684           8 EFSGGWRIRVSL-----ARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQ   52 (356)
Q Consensus         8 ~LSgGe~~r~~l-----a~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~   52 (356)
                      +|||||+||++|     +++|+.+|++++|||||+++|..+...+.+.+.
T Consensus       122 ~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~  171 (218)
T 1z6g_A          122 NINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRME  171 (218)
T ss_dssp             CHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred             cHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            579999999999     899999999999999999999876555554443

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.27  E-value=8e-08  Score=86.48  Aligned_cols=41  Identities=22%  Similarity=0.400  Sum_probs=37.6

Q ss_pred             cCCCeEEEEcCCCCCcchhhhhhc---cccccCCCcee--------Eeeecc
Q psy2684         204 DMESRVALVGPNGIGKSTFLNLLK---GELTPNKGKVL--------LEKVNF  244 (356)
Q Consensus       204 ~~ge~~~i~G~nGsGKSTll~~l~---gl~~p~~G~i~--------~~g~~~  244 (356)
                      .+|++++|+|||||||||++++|+   |+..|++|.++        .+|.++
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~   76 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDI   76 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCc
Confidence            689999999999999999999999   99999999998        666655

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.26  E-value=7.7e-08  Score=87.54  Aligned_cols=59  Identities=10%  Similarity=0.120  Sum_probs=48.9

Q ss_pred             CCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHH
Q psy2684           5 STKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFL   68 (356)
Q Consensus         5 ~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l   68 (356)
                      .+.+|||||+||+++|++++.   +++||||+.+||+...+.+..+ .+. .+||+|.|..+.+
T Consensus        95 ~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~~l~~L-~~~-~~vI~Vi~K~D~l  153 (270)
T 3sop_A           95 LKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLEFMKHL-SKV-VNIIPVIAKADTM  153 (270)
T ss_dssp             HHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHHHHHHH-HTT-SEEEEEETTGGGS
T ss_pred             hHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHHHHHHH-Hhc-CcEEEEEeccccC
Confidence            456899999999999999987   9999999999999886655554 444 8999998885544

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.25  E-value=3.2e-07  Score=79.35  Aligned_cols=40  Identities=25%  Similarity=0.324  Sum_probs=33.4

Q ss_pred             eeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc
Q psy2684         201 FGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF  244 (356)
Q Consensus       201 l~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~  244 (356)
                      ++..+|++++|+|||||||||++++|++.+    |.+.+++.++
T Consensus        24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~   63 (200)
T 4eun_A           24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAF   63 (200)
T ss_dssp             ----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGG
T ss_pred             hcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccc
Confidence            556789999999999999999999999987    8899988765

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.24  E-value=2.5e-07  Score=80.00  Aligned_cols=35  Identities=20%  Similarity=0.320  Sum_probs=29.5

Q ss_pred             eeecCCCeEEEEcCCCCCcchhhhhhccccccCCC
Q psy2684         201 FGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG  235 (356)
Q Consensus       201 l~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G  235 (356)
                      ++|.+|++++|+|||||||||++++|++++.|+.|
T Consensus         1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~   35 (207)
T 2j41_A            1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK   35 (207)
T ss_dssp             ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence            46789999999999999999999999999977544

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.24  E-value=2.5e-07  Score=87.47  Aligned_cols=57  Identities=18%  Similarity=0.177  Sum_probs=49.7

Q ss_pred             HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEEe
Q psy2684          18 SLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLD   79 (356)
Q Consensus        18 ~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l~   79 (356)
                      +||++|.++||+|||||||   |.++.+.+.+.. ..+.+||+++|+.+.+ ..|||+++|.
T Consensus       188 ~La~aL~~~PdvillDEp~---d~e~~~~~~~~~-~~G~~vl~t~H~~~~~-~~~dRli~l~  244 (356)
T 3jvv_A          188 ALRSALREDPDIILVGEMR---DLETIRLALTAA-ETGHLVFGTLHTTSAA-KTIDRVVDVF  244 (356)
T ss_dssp             HHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEESCSSHH-HHHHHHHHTS
T ss_pred             HHHHHhhhCcCEEecCCCC---CHHHHHHHHHHH-hcCCEEEEEEccChHH-HHHHHHhhhc
Confidence            9999999999999999999   888877766664 4488999999999988 6799998774

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.22  E-value=2.3e-07  Score=79.33  Aligned_cols=37  Identities=24%  Similarity=0.326  Sum_probs=32.7

Q ss_pred             CCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccc
Q psy2684         206 ESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFG  245 (356)
Q Consensus       206 ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~  245 (356)
                      |++++|+|||||||||++++|++   |..|.+++++.++.
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~   38 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIIN   38 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchh
Confidence            67899999999999999999987   67899999987653

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.21  E-value=9.6e-08  Score=88.89  Aligned_cols=60  Identities=20%  Similarity=0.312  Sum_probs=47.2

Q ss_pred             ecceeeeCCCccccccceeeecCCC------eEEEEcCCCCCcchhhhhhccccc--cCCCceeEeeec
Q psy2684         183 HDVTFGYPGGKVLLEKVNFGLDMES------RVALVGPNGIGKSTFLNLLKGELT--PNKGKVLLEKVN  243 (356)
Q Consensus       183 ~~l~~~~~~~~~~l~~~sl~i~~ge------~~~i~G~nGsGKSTll~~l~gl~~--p~~G~i~~~g~~  243 (356)
                      +.+++.| ++...+.+++..+..+.      ++||+||||||||||+++|.+++.  |+.|.+.+-+.+
T Consensus        64 rll~~~~-~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D  131 (321)
T 3tqc_A           64 RLLSFYV-TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTD  131 (321)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred             HHHHHhh-cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeec
Confidence            3455556 45567888888888777      899999999999999999999998  567876654433

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.20  E-value=2.5e-07  Score=84.35  Aligned_cols=48  Identities=17%  Similarity=0.221  Sum_probs=42.1

Q ss_pred             ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc
Q psy2684         193 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF  244 (356)
Q Consensus       193 ~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~  244 (356)
                      ..+++++++++++|  ++|+||||||||||+++|+|...+  +.|.++|.++
T Consensus        33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l   80 (274)
T 2x8a_A           33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPEL   80 (274)
T ss_dssp             HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTT
T ss_pred             HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHH
Confidence            35789999999999  999999999999999999999877  6788887654

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=98.19  E-value=9.3e-07  Score=83.38  Aligned_cols=75  Identities=16%  Similarity=0.115  Sum_probs=47.8

Q ss_pred             CHHHHHHHHHHHHHc-------cCCCEEEEeCCCCCCCHHH------------HHH----HHHHHHhcCcEEEEEecChh
Q psy2684          10 SGGWRIRVSLARALF-------LEPTLLLLDEPTNHLDLNA------------VIW----LDNYLQTWKKTLLVVSHDQS   66 (356)
Q Consensus        10 SgGe~~r~~la~~l~-------~~p~~llLDEPt~~LD~~~------------~~~----l~~~l~~~~~tvi~vsHd~~   66 (356)
                      |.++++++.+++.++       .+|++||+||||++||+..            ...    |.++.++++.|||+++|+..
T Consensus       208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~  287 (349)
T 1pzn_A          208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA  287 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred             hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence            578999999999999       6899999999999999851            222    34444557899999999987


Q ss_pred             HHhhhcCEEEEEeCCeEe
Q psy2684          67 FLNNICTDIIHLDMKKLF   84 (356)
Q Consensus        67 ~l~~~~~~i~~l~~g~~~   84 (356)
                      .....++.......|.+.
T Consensus       288 ~~~~~~~~~~~~~~G~~l  305 (349)
T 1pzn_A          288 RPDAFFGDPTRPIGGHIL  305 (349)
T ss_dssp             --------------CCCC
T ss_pred             ccccccCCccccCCcceE
Confidence            665444444555556554

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.19  E-value=1.5e-07  Score=84.17  Aligned_cols=38  Identities=29%  Similarity=0.446  Sum_probs=34.9

Q ss_pred             CCCeEEEEcCCCCCcchhhhhhc---cccccCCCceeEeee
Q psy2684         205 MESRVALVGPNGIGKSTFLNLLK---GELTPNKGKVLLEKV  242 (356)
Q Consensus       205 ~ge~~~i~G~nGsGKSTll~~l~---gl~~p~~G~i~~~g~  242 (356)
                      ++++++|+|||||||||++++|+   |+..|+.|+|.+++.
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~   66 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENI   66 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHH
Confidence            47899999999999999999999   999999999988764

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.17  E-value=1.1e-07  Score=85.39  Aligned_cols=60  Identities=20%  Similarity=0.282  Sum_probs=50.2

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF  244 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~  244 (356)
                      .+++++.+.| +...+++++++++++|  +.|+||||+|||||++++++...  .|.+.+++.++
T Consensus        26 ~~l~~l~~~~-~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~   85 (254)
T 1ixz_A           26 EELKEIVEFL-KNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF   85 (254)
T ss_dssp             HHHHHHHHHH-HCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHH
T ss_pred             HHHHHHHHHH-HCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHH
Confidence            4567777777 4456899999999999  99999999999999999999875  77888877543

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.15  E-value=1.2e-07  Score=86.31  Aligned_cols=60  Identities=20%  Similarity=0.282  Sum_probs=50.0

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF  244 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~  244 (356)
                      .+++++.+.| +...+++++++++++|  ++|+||||+|||||+++|++...  .|.|.+++.++
T Consensus        50 ~~l~~l~~~~-~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~  109 (278)
T 1iy2_A           50 EELKEIVEFL-KNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF  109 (278)
T ss_dssp             HHHHHHHHHH-HCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHH
T ss_pred             HHHHHHHHHH-HCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHH
Confidence            3456777777 4456899999999999  99999999999999999999885  78888887543

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.14  E-value=8e-07  Score=78.67  Aligned_cols=42  Identities=24%  Similarity=0.194  Sum_probs=36.3

Q ss_pred             ceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc
Q psy2684         199 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF  244 (356)
Q Consensus       199 ~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~  244 (356)
                      -+.+..+|++++|.|+|||||||++++|++.    .|+|.+.+.+.
T Consensus        13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~   54 (230)
T 2vp4_A           13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV   54 (230)
T ss_dssp             CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred             ccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence            3445678999999999999999999999998    78899887654

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.13  E-value=6.3e-07  Score=83.46  Aligned_cols=49  Identities=27%  Similarity=0.285  Sum_probs=45.0

Q ss_pred             cccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc
Q psy2684         196 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF  244 (356)
Q Consensus       196 l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~  244 (356)
                      +.+++|++.+|++++|+|+||+||||++..|++.+.+..|+|.+.+.|+
T Consensus        95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~  143 (320)
T 1zu4_A           95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT  143 (320)
T ss_dssp             -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            3678999999999999999999999999999999999999999988775

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.13  E-value=5.5e-07  Score=77.79  Aligned_cols=38  Identities=26%  Similarity=0.328  Sum_probs=24.8

Q ss_pred             ccccccceeeecCCCeEEEEcCCCCCcchhhhhhcccc
Q psy2684         193 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       193 ~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      ...++++||++.+|.+++|+|++||||||+.+.|+..+
T Consensus        12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            45899999999999999999999999999999999765

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.13  E-value=5.8e-07  Score=76.44  Aligned_cols=34  Identities=21%  Similarity=0.320  Sum_probs=28.7

Q ss_pred             CCCeEEEEcCCCCCcchhhhhhcccccc-CCCcee
Q psy2684         205 MESRVALVGPNGIGKSTFLNLLKGELTP-NKGKVL  238 (356)
Q Consensus       205 ~ge~~~i~G~nGsGKSTll~~l~gl~~p-~~G~i~  238 (356)
                      +|++++|+||||||||||+++|.+.+++ ..|.|.
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~   38 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIP   38 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeee
Confidence            6899999999999999999999998864 344443

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=98.12  E-value=7.4e-07  Score=93.86  Aligned_cols=44  Identities=27%  Similarity=0.337  Sum_probs=38.9

Q ss_pred             CccccccceeeecCCCeEEEEcCCCCCcchhhhhh--------ccccccCCC
Q psy2684         192 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL--------KGELTPNKG  235 (356)
Q Consensus       192 ~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l--------~gl~~p~~G  235 (356)
                      +..+++|++|++.+|++++|+|||||||||+++++        .|.+-|..+
T Consensus       648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~  699 (934)
T 3thx_A          648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCES  699 (934)
T ss_dssp             CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEE
T ss_pred             ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccc
Confidence            35689999999999999999999999999999999        777766554

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=98.12  E-value=1.3e-06  Score=90.87  Aligned_cols=74  Identities=14%  Similarity=0.003  Sum_probs=48.8

Q ss_pred             CCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH---H-HHHHHHHHh-cCcEEEEEecChhHHhhhcCEEEEEeC
Q psy2684           6 TKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNA---V-IWLDNYLQT-WKKTLLVVSHDQSFLNNICTDIIHLDM   80 (356)
Q Consensus         6 ~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~---~-~~l~~~l~~-~~~tvi~vsHd~~~l~~~~~~i~~l~~   80 (356)
                      ..++|+++++ ++.+..++.+|+++|||||++++|+..   + ..+.+.+.+ .+.++|++|||.++. .+||++..+.+
T Consensus       667 ~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~-~l~d~~~~v~n  744 (800)
T 1wb9_A          667 RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT-QLPEKMEGVAN  744 (800)
T ss_dssp             ---CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHHSTTEEE
T ss_pred             hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHH-HHhhhhhceEE
Confidence            4567777664 444445689999999999977777643   2 234444544 478999999998766 47776544444


Q ss_pred             C
Q psy2684          81 K   81 (356)
Q Consensus        81 g   81 (356)
                      +
T Consensus       745 ~  745 (800)
T 1wb9_A          745 V  745 (800)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.11  E-value=7.1e-07  Score=77.28  Aligned_cols=43  Identities=19%  Similarity=0.101  Sum_probs=38.2

Q ss_pred             eecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc
Q psy2684         202 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF  244 (356)
Q Consensus       202 ~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~  244 (356)
                      ...+|.+++|+|+|||||||++++|++.+.+..|.|.+.+.+.
T Consensus        18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~   60 (201)
T 1rz3_A           18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD   60 (201)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred             ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence            3567899999999999999999999999999999998876654

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.10  E-value=4.5e-07  Score=76.87  Aligned_cols=37  Identities=24%  Similarity=0.400  Sum_probs=33.8

Q ss_pred             eeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCc
Q psy2684         200 NFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGK  236 (356)
Q Consensus       200 sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~  236 (356)
                      +|++.+|+.++|+||||+|||||++++++.+.|..|.
T Consensus        32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~   68 (180)
T 3ec2_A           32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI   68 (180)
T ss_dssp             SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC
T ss_pred             hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC
Confidence            5677889999999999999999999999999888774

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=98.09  E-value=7.4e-07  Score=84.05  Aligned_cols=51  Identities=22%  Similarity=0.415  Sum_probs=43.0

Q ss_pred             ccccccc-eeeecCCCeEEEEcCCCCCcchhhhhhcccc--ccCC----Cc-eeEeeec
Q psy2684         193 KVLLEKV-NFGLDMESRVALVGPNGIGKSTFLNLLKGEL--TPNK----GK-VLLEKVN  243 (356)
Q Consensus       193 ~~~l~~~-sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~--~p~~----G~-i~~~g~~  243 (356)
                      ...|+.+ ++.|++|++++|+||||||||||++.+++..  +|+.    |. |++++.+
T Consensus       117 ~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~  175 (349)
T 1pzn_A          117 SKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN  175 (349)
T ss_dssp             CHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred             CHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence            3456665 6899999999999999999999999999998  7776    57 7887654

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=98.09  E-value=3.9e-08  Score=91.43  Aligned_cols=60  Identities=12%  Similarity=-0.017  Sum_probs=45.2

Q ss_pred             CCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHH
Q psy2684           4 KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFL   68 (356)
Q Consensus         4 ~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l   68 (356)
                      ..+.+|||||+||+++|++++.+|+|||||||+..+|+..     ..+.++-..+|+|+|+.+..
T Consensus       172 ~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~D~~I~V~a~~~~~  231 (312)
T 3aez_A          172 ACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLFDFSLYVDARIEDI  231 (312)
T ss_dssp             EEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGCSEEEEEEECHHHH
T ss_pred             CCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhcCcEEEEECCHHHH
Confidence            5577999999999999999999999999999999998621     11222223456677776553

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=98.09  E-value=9.5e-07  Score=91.80  Aligned_cols=39  Identities=21%  Similarity=0.250  Sum_probs=35.7

Q ss_pred             CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccc
Q psy2684         192 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT  231 (356)
Q Consensus       192 ~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~  231 (356)
                      +..+++|++|+ .+|++++|+||||||||||+++++|+..
T Consensus       594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~  632 (800)
T 1wb9_A          594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIAL  632 (800)
T ss_dssp             SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHH
Confidence            45689999999 9999999999999999999999999753

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.09  E-value=3.2e-07  Score=89.65  Aligned_cols=69  Identities=22%  Similarity=0.266  Sum_probs=52.1

Q ss_pred             eeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeC-----------------CCceEEEeecCcCCCCCCC
Q psy2684         240 EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKS-----------------PRLRIGKFDQHSGEHLFPD  302 (356)
Q Consensus       240 ~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~-----------------~~~~ig~~~Q~~~~~l~~~  302 (356)
                      ++.++.+..++.++++|+|||||||++++|+|.+.+..|.+...                 .+.+++|++|+..  +++.
T Consensus       284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~--~~p~  361 (503)
T 2yhs_A          284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTG--ADSA  361 (503)
T ss_dssp             CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTT--CCHH
T ss_pred             CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccC--cCHH
Confidence            34566677889999999999999999999999988877776542                 0235899999753  4555


Q ss_pred             CCHHHHHH
Q psy2684         303 DTPCEYLM  310 (356)
Q Consensus       303 ~t~~e~~~  310 (356)
                      .++.+++.
T Consensus       362 ~tV~e~l~  369 (503)
T 2yhs_A          362 SVIFDAIQ  369 (503)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66666654

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.08  E-value=1.3e-06  Score=72.12  Aligned_cols=39  Identities=18%  Similarity=0.304  Sum_probs=33.9

Q ss_pred             CCCeEEEEcCCCCCcchhhhhhccccccCCC--ceeEeeecc
Q psy2684         205 MESRVALVGPNGIGKSTFLNLLKGELTPNKG--KVLLEKVNF  244 (356)
Q Consensus       205 ~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G--~i~~~g~~~  244 (356)
                      +|+.++|+||||+|||||++++++.+.+ +|  .+++++.++
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~   75 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASM   75 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHh
Confidence            8999999999999999999999999987 57  667766544

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=98.06  E-value=2.3e-06  Score=80.86  Aligned_cols=47  Identities=15%  Similarity=0.187  Sum_probs=38.6

Q ss_pred             cccccceeeecCCCeEEEEcCCCCCcchhhhhhcc-------------ccccCCCceeEee
Q psy2684         194 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG-------------ELTPNKGKVLLEK  241 (356)
Q Consensus       194 ~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~g-------------l~~p~~G~i~~~g  241 (356)
                      ..+++++|++.+| +++|+|||||||||++++|.+             ++...++...+.+
T Consensus        15 ~~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~~~~g~~R~~~~~~lI~~g~~~~~V~~   74 (359)
T 2o5v_A           15 RNLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYLALTGQTDAPRIEQLIQAGETEAYVRA   74 (359)
T ss_dssp             TTCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHHHSCCCCSSGGGGBCTTCSCEEEEE
T ss_pred             cceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHHhccCCCCCCCHHHHhccCCCcEEEEE
Confidence            3578899999999 999999999999999999997             5555555555543

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.06  E-value=1.2e-06  Score=81.06  Aligned_cols=47  Identities=26%  Similarity=0.282  Sum_probs=42.3

Q ss_pred             cceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc
Q psy2684         198 KVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF  244 (356)
Q Consensus       198 ~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~  244 (356)
                      .++|+..+|++++|+|+|||||||++..|++.+.+..|+|.+.+.|.
T Consensus        96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~  142 (306)
T 1vma_A           96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT  142 (306)
T ss_dssp             CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred             CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence            45667788999999999999999999999999999999999987764

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.04  E-value=2.1e-07  Score=87.57  Aligned_cols=63  Identities=24%  Similarity=0.155  Sum_probs=52.3

Q ss_pred             EEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc
Q psy2684         181 GLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF  244 (356)
Q Consensus       181 ~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~  244 (356)
                      +.+++.+.| +...+++++++.+.++.+++|+|++|+|||||++.|++.+.+..+++.+-+.+.
T Consensus        32 e~~~~~~~~-~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~   94 (341)
T 2p67_A           32 ESRHPRHQA-LSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP   94 (341)
T ss_dssp             HCCCHHHHH-HHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             hcCCchhhh-HHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence            344555555 345688999999999999999999999999999999999999888888766554

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=98.03  E-value=1e-06  Score=83.28  Aligned_cols=54  Identities=15%  Similarity=0.194  Sum_probs=48.8

Q ss_pred             cEEEecceeeeCCCccccc--------------cceeeecCCCeEEEEcCCCCCcchhhhhhcccccc
Q psy2684         179 VLGLHDVTFGYPGGKVLLE--------------KVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP  232 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~--------------~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p  232 (356)
                      -+.++|+++.|+..+..++              |+++.|.+|++++|+||+|+|||||++.|++....
T Consensus       133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~  200 (422)
T 3ice_A          133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY  200 (422)
T ss_dssp             SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred             CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhh
Confidence            3678999999987777888              89999999999999999999999999999987643

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=98.02  E-value=2.5e-07  Score=87.22  Aligned_cols=70  Identities=17%  Similarity=0.166  Sum_probs=61.0

Q ss_pred             CCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc-----Cc-----EEEEEecChhHHhhhcC
Q psy2684           4 KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW-----KK-----TLLVVSHDQSFLNNICT   73 (356)
Q Consensus         4 ~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~-----~~-----tvi~vsHd~~~l~~~~~   73 (356)
                      .++..||+|| |++++|   +.+|++      |++||+.....+.+++.+.     +.     ||+++|||++  ..+||
T Consensus       167 d~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d  234 (347)
T 2obl_A          167 DSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGD  234 (347)
T ss_dssp             ETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHH
T ss_pred             hhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--Chhhh
Confidence            4577899999 899999   578877      9999999999999999865     23     8999999998  67899


Q ss_pred             EEEEEeCCeEeE
Q psy2684          74 DIIHLDMKKLFY   85 (356)
Q Consensus        74 ~i~~l~~g~~~~   85 (356)
                      ++++|.+|+++.
T Consensus       235 ~v~~i~dG~Ivl  246 (347)
T 2obl_A          235 EVRSILDGHIVL  246 (347)
T ss_dssp             HHHHHCSEEEEB
T ss_pred             heEEeeCcEEEE
Confidence            999999999975

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=98.02  E-value=3.7e-07  Score=88.65  Aligned_cols=68  Identities=16%  Similarity=0.132  Sum_probs=59.6

Q ss_pred             CCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcC------c------EEEEEecChhHHhhhcC
Q psy2684           6 TKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK------K------TLLVVSHDQSFLNNICT   73 (356)
Q Consensus         6 ~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~------~------tvi~vsHd~~~l~~~~~   73 (356)
                      +..||+|| ||++||   +.+|++      |++||+.....+.+++.+..      +      ||+++|||++  ..+||
T Consensus       256 l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad  323 (438)
T 2dpy_A          256 LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIAD  323 (438)
T ss_dssp             HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHH
T ss_pred             HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhc
Confidence            45789999 999999   888888      99999999999999887652      3      8999999998  67899


Q ss_pred             EEEEEeCCeEeE
Q psy2684          74 DIIHLDMKKLFY   85 (356)
Q Consensus        74 ~i~~l~~g~~~~   85 (356)
                      ++++|.+|+++.
T Consensus       324 ~v~~l~dG~Ivl  335 (438)
T 2dpy_A          324 SARAILDGHIVL  335 (438)
T ss_dssp             HHHHHSSEEEEE
T ss_pred             eEEEEeCcEEEE
Confidence            999999999875

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.01  E-value=9.7e-07  Score=77.71  Aligned_cols=50  Identities=16%  Similarity=0.199  Sum_probs=36.8

Q ss_pred             cCcCCeeeeecCCCCchhhHHHHHhCCCCC--CcceeEeC---C----CceEEEeecCc
Q psy2684         246 LDMESRVALVGPNGIGKSTFLNLLKGELTP--NKGELRKS---P----RLRIGKFDQHS  295 (356)
Q Consensus       246 ~~~~~~ialvG~nG~GKsTll~~l~g~~~~--~~g~~~~~---~----~~~ig~~~Q~~  295 (356)
                      ...++.++++||||||||||+++|+|...|  ..+.+...   +    ...++|+||++
T Consensus        13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~   71 (219)
T 1s96_A           13 MAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNH   71 (219)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCH
Confidence            456888999999999999999999998875  44544321   1    23478999875

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.99  E-value=1.7e-06  Score=74.67  Aligned_cols=31  Identities=23%  Similarity=0.410  Sum_probs=26.6

Q ss_pred             eeecCCCeEEEEcCCCCCcchhhhhhccccc
Q psy2684         201 FGLDMESRVALVGPNGIGKSTFLNLLKGELT  231 (356)
Q Consensus       201 l~i~~ge~~~i~G~nGsGKSTll~~l~gl~~  231 (356)
                      +...+|++++|+||||||||||++.|.+.++
T Consensus        14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            4445899999999999999999999998875

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=97.99  E-value=2.1e-06  Score=84.01  Aligned_cols=43  Identities=30%  Similarity=0.311  Sum_probs=38.7

Q ss_pred             EeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEe
Q psy2684         239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRK  282 (356)
Q Consensus       239 ~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~  282 (356)
                      +++.++.+.. +.++++||||||||||+++|+|.+.|..|.+..
T Consensus        20 l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~   62 (483)
T 3euj_A           20 FFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNF   62 (483)
T ss_dssp             EEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCC
T ss_pred             ccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEE
Confidence            5678888888 999999999999999999999999999888743

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=97.97  E-value=3e-06  Score=82.08  Aligned_cols=48  Identities=27%  Similarity=0.477  Sum_probs=37.8

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCC
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK  234 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~  234 (356)
                      ++++|+ ..| ++.   .  ++++.+|++++|+||||||||||+++|+++..|.+
T Consensus         7 l~~~~~-~~~-~~~---~--~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~   54 (430)
T 1w1w_A            7 LELSNF-KSY-RGV---T--KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRS   54 (430)
T ss_dssp             EEEESC-SSC-CSE---E--EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred             EEEeCE-EEE-CCc---e--eEEecCCCEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence            678888 677 332   1  35567899999999999999999999999988865

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.97  E-value=2.8e-06  Score=75.06  Aligned_cols=42  Identities=17%  Similarity=0.264  Sum_probs=35.1

Q ss_pred             eecCCCeEEEEcCCCCCcchhhhhhcc--cccc-----CCCceeEeeec
Q psy2684         202 GLDMESRVALVGPNGIGKSTFLNLLKG--ELTP-----NKGKVLLEKVN  243 (356)
Q Consensus       202 ~i~~ge~~~i~G~nGsGKSTll~~l~g--l~~p-----~~G~i~~~g~~  243 (356)
                      -|++|++++|+||||||||||++.+++  ..+|     ..|.+++++.+
T Consensus        20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~   68 (243)
T 1n0w_A           20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG   68 (243)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred             CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence            478999999999999999999999999  5655     56677777543

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=97.94  E-value=1.9e-07  Score=86.39  Aligned_cols=59  Identities=15%  Similarity=0.112  Sum_probs=46.1

Q ss_pred             CCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCC-CCHHHHHHHHHHHHhcCcEEEEEecChh
Q psy2684           4 KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNH-LDLNAVIWLDNYLQTWKKTLLVVSHDQS   66 (356)
Q Consensus         4 ~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~-LD~~~~~~l~~~l~~~~~tvi~vsHd~~   66 (356)
                      +++.++|||+|||+.+|++++    +|++||||++ ||+...+.+..+-.+.+.++|+.+||+.
T Consensus       109 ~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~~~l~~l~~~~~iilV~~K~Dl~  168 (301)
T 2qnr_A          109 RYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTL  168 (301)
T ss_dssp             HHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHHHHHHHHTTTSCEEEEECCGGGS
T ss_pred             HHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHHHHHHHHHhcCCEEEEEEeCCCC
Confidence            456789999999999988886    9999999986 9998865554443334567888889863

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.94  E-value=1.8e-06  Score=82.12  Aligned_cols=43  Identities=23%  Similarity=0.251  Sum_probs=38.1

Q ss_pred             cccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeE
Q psy2684         194 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL  239 (356)
Q Consensus       194 ~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~  239 (356)
                      .+++++++.+++|++++|+||||||||||+++|+|..   .|.+..
T Consensus       157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~  199 (377)
T 1svm_A          157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALN  199 (377)
T ss_dssp             HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEEC
T ss_pred             HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEE
Confidence            5889999999999999999999999999999999853   566544

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.93  E-value=2.7e-06  Score=71.56  Aligned_cols=37  Identities=22%  Similarity=0.249  Sum_probs=32.3

Q ss_pred             cCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc
Q psy2684         204 DMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF  244 (356)
Q Consensus       204 ~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~  244 (356)
                      .+|++++|+|+|||||||+++.|++.+    |.+++++.++
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~   42 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFL   42 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGG
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccc
Confidence            468899999999999999999999876    7888887665

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=97.90  E-value=1.4e-06  Score=86.82  Aligned_cols=43  Identities=28%  Similarity=0.231  Sum_probs=38.1

Q ss_pred             eecCCCeEEEEcCCCCCcchhhhhhccccccCCC-cee-Eeeecc
Q psy2684         202 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG-KVL-LEKVNF  244 (356)
Q Consensus       202 ~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G-~i~-~~g~~~  244 (356)
                      .+.+|++++|+|+||||||||+++|++.+.|++| .+. ++|.++
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~  409 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV  409 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence            6789999999999999999999999999999987 674 776554

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.89  E-value=3.6e-06  Score=81.01  Aligned_cols=66  Identities=20%  Similarity=0.048  Sum_probs=43.2

Q ss_pred             EeeeccccCcCCe--eeeecCCCCchhhHHHHHhCCCCCCcceeE----eCCCceEEEeecCcCCCCCCCCCHHH
Q psy2684         239 LEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKGELR----KSPRLRIGKFDQHSGEHLFPDDTPCE  307 (356)
Q Consensus       239 ~~g~~~~~~~~~~--ialvG~nG~GKsTll~~l~g~~~~~~g~~~----~~~~~~ig~~~Q~~~~~l~~~~t~~e  307 (356)
                      ++++++.+..++.  ++++|+||+|||||+++|+|..-... .+.    ......++|++|++.  +++..|+.+
T Consensus        30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~-~~~~~~~~~~~~~i~~v~Q~~~--l~~~ltv~D  101 (427)
T 2qag_B           30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGE-PATHTQPGVQLQSNTYDLQESN--VRLKLTIVS  101 (427)
T ss_dssp             HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC--------CCSSCEEEEEEEEEEC----CEEEEEEEE
T ss_pred             cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCC-cCCCCCccceEeeEEEEeecCc--cccccchhh
Confidence            6778888899999  99999999999999999999742110 111    011236899999753  333444444

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.87  E-value=4.2e-06  Score=72.76  Aligned_cols=29  Identities=24%  Similarity=0.404  Sum_probs=27.3

Q ss_pred             cCCCeEEEEcCCCCCcchhhhhhcccccc
Q psy2684         204 DMESRVALVGPNGIGKSTFLNLLKGELTP  232 (356)
Q Consensus       204 ~~ge~~~i~G~nGsGKSTll~~l~gl~~p  232 (356)
                      ++|++++|+|||||||||+++.|++.+++
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~   34 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPET   34 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence            57999999999999999999999999876

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=97.84  E-value=4.1e-06  Score=79.94  Aligned_cols=40  Identities=25%  Similarity=0.452  Sum_probs=35.8

Q ss_pred             eecCCCeEEEEcCCCCCcchhhhhhcc------------ccccCCCceeEee
Q psy2684         202 GLDMESRVALVGPNGIGKSTFLNLLKG------------ELTPNKGKVLLEK  241 (356)
Q Consensus       202 ~i~~ge~~~i~G~nGsGKSTll~~l~g------------l~~p~~G~i~~~g  241 (356)
                      .+..|.+++|+|+||+|||||+++|+|            .+.|+.|.+.+.|
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~   67 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD   67 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence            356899999999999999999999999            6678999998876

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.83  E-value=5.3e-06  Score=74.02  Aligned_cols=39  Identities=21%  Similarity=0.123  Sum_probs=25.3

Q ss_pred             CceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCC
Q psy2684         235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       235 G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      +...+++.++.+..+..+|++|+|||||||++++|+|.+
T Consensus        11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A           11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL   49 (245)
T ss_dssp             ------------CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            345678889999999999999999999999999999854

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.83  E-value=6.5e-06  Score=72.61  Aligned_cols=34  Identities=24%  Similarity=0.230  Sum_probs=21.8

Q ss_pred             eeeccccCcCCeeeeecCCCCchhhHHHHHh-CCC
Q psy2684         240 EKVNFGLDMESRVALVGPNGIGKSTFLNLLK-GEL  273 (356)
Q Consensus       240 ~g~~~~~~~~~~ialvG~nG~GKsTll~~l~-g~~  273 (356)
                      ++.++.+..++.++++|||||||||++++|+ +..
T Consensus        18 ~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           18 GPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             ----CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred             CCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            4567778889999999999999999999999 887

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=97.82  E-value=3.6e-06  Score=71.92  Aligned_cols=37  Identities=22%  Similarity=0.422  Sum_probs=30.3

Q ss_pred             eEEEEcCCCCCcchhhhhhcccccc-----------CCCceeEeeecc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGELTP-----------NKGKVLLEKVNF  244 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~~p-----------~~G~i~~~g~~~  244 (356)
                      +++|+|+||||||||++.++|...+           ..|.|.++|.++
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~   78 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI   78 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence            5899999999999999999998765           456677766543

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.80  E-value=7.5e-07  Score=81.81  Aligned_cols=96  Identities=15%  Similarity=0.017  Sum_probs=56.4

Q ss_pred             CCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---------cC----C
Q psy2684         249 ESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---------FN----L  315 (356)
Q Consensus       249 ~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---------~~----~  315 (356)
                      ...++++|++||||||+++.|.+.+.+....     ...+.+++|+..  ++ ..+..+++...         .+    .
T Consensus        31 ~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~-----~~~~~iv~~D~f--~~-~~~~~~~l~~~~~~~~l~~~~g~p~a~  102 (290)
T 1odf_A           31 PLFIFFSGPQGSGKSFTSIQIYNHLMEKYGG-----EKSIGYASIDDF--YL-THEDQLKLNEQFKNNKLLQGRGLPGTH  102 (290)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHHHGG-----GSCEEEEEGGGG--BC-CHHHHHHHHHHTTTCGGGSSSCSTTSB
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhhhcCCC-----CceEEEeccccc--cC-ChHHHHHHhccccccchhhhccCcchh
Confidence            4568999999999999999999876542100     123445599863  33 33445544321         01    1


Q ss_pred             CHHHHHHHHhhcCCC------Cc-cccCCCCCCChHHHHHHHHH
Q psy2684         316 PYEKSRRQLGMFGLP------SY-AHTIPIRDLSGGQKARVALA  352 (356)
Q Consensus       316 ~~~~~~~~L~~~~l~------~~-~~~~~~~~LSGGqkqRvalA  352 (356)
                      ......+.+..+.-.      .. .....-..+||||+||+++|
T Consensus       103 d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a  146 (290)
T 1odf_A          103 DMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTG  146 (290)
T ss_dssp             CHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSC
T ss_pred             HHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccc
Confidence            234455666665432      10 00112268999999998775

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.78  E-value=2.6e-06  Score=79.56  Aligned_cols=62  Identities=18%  Similarity=0.187  Sum_probs=45.9

Q ss_pred             CcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeC---C--------------CceEEEeecCcCCCCCCCCCHHHHH
Q psy2684         247 DMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKS---P--------------RLRIGKFDQHSGEHLFPDDTPCEYL  309 (356)
Q Consensus       247 ~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~---~--------------~~~ig~~~Q~~~~~l~~~~t~~e~~  309 (356)
                      ..++.++++|+|||||||+++.|+|.+.+..|.+...   .              +..+.|++|..  .+++..++.+++
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~--~~~p~~~v~e~l  204 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSY--GADPAAVAYDAI  204 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCT--TCCHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccc--cCCHHHHHHHHH
Confidence            4567899999999999999999999998888876431   0              12355888865  356666777765


Q ss_pred             H
Q psy2684         310 M  310 (356)
Q Consensus       310 ~  310 (356)
                      .
T Consensus       205 ~  205 (328)
T 3e70_C          205 Q  205 (328)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.78  E-value=5.9e-06  Score=71.77  Aligned_cols=41  Identities=34%  Similarity=0.374  Sum_probs=33.0

Q ss_pred             CcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCc
Q psy2684         247 DMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHS  295 (356)
Q Consensus       247 ~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~  295 (356)
                      ..++.++++|+||||||||+++|+|.+.+. |       ..+|+++++.
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g-------~~~g~v~~d~   60 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G-------LPAEVVPMDG   60 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T-------CCEEEEESGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C-------CceEEEecCC
Confidence            356789999999999999999999987653 2       2478888875

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.76  E-value=2.2e-06  Score=80.38  Aligned_cols=58  Identities=22%  Similarity=0.313  Sum_probs=44.5

Q ss_pred             EeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEe---------------CCCceEEEeecCcC
Q psy2684         239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRK---------------SPRLRIGKFDQHSG  296 (356)
Q Consensus       239 ~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~---------------~~~~~ig~~~Q~~~  296 (356)
                      +++.++.+..++.++++|+||||||||+++++|.+.+..|.+..               ..+.+++|++|++.
T Consensus        45 l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~  117 (337)
T 2qm8_A           45 IDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRN  117 (337)
T ss_dssp             HHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTT
T ss_pred             HHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcc
Confidence            45566667788999999999999999999999887776666531               12346888999764

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.75  E-value=7e-06  Score=71.31  Aligned_cols=47  Identities=17%  Similarity=0.133  Sum_probs=36.6

Q ss_pred             cccccccee-eecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEee
Q psy2684         193 KVLLEKVNF-GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK  241 (356)
Q Consensus       193 ~~~l~~~sl-~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g  241 (356)
                      .+.|+.+.. .+++|++++|+||||||||||++.+++  .+..+.++++.
T Consensus         6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~   53 (220)
T 2cvh_A            6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDT   53 (220)
T ss_dssp             CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEES
T ss_pred             cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEEC
Confidence            346677665 689999999999999999999999999  44444455553

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.74  E-value=4.7e-05  Score=67.05  Aligned_cols=57  Identities=12%  Similarity=0.141  Sum_probs=38.1

Q ss_pred             cCCCEEEEeCCCCCCCHH-------H-----HH----HHHHHHHhcCcEEEEEecChhHH-------------------h
Q psy2684          25 LEPTLLLLDEPTNHLDLN-------A-----VI----WLDNYLQTWKKTLLVVSHDQSFL-------------------N   69 (356)
Q Consensus        25 ~~p~~llLDEPt~~LD~~-------~-----~~----~l~~~l~~~~~tvi~vsHd~~~l-------------------~   69 (356)
                      .+|+++++|||++.+|+.       +     ..    .|.++.++++.|||+++|.....                   .
T Consensus       118 ~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~  197 (243)
T 1n0w_A          118 SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIA  197 (243)
T ss_dssp             SCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------C
T ss_pred             CCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhh
Confidence            589999999999999974       2     12    23445556689999999976543                   3


Q ss_pred             hhcCEEEEEeCC
Q psy2684          70 NICTDIIHLDMK   81 (356)
Q Consensus        70 ~~~~~i~~l~~g   81 (356)
                      .+||++++|+.+
T Consensus       198 ~~~d~vi~l~~~  209 (243)
T 1n0w_A          198 HASTTRLYLRKG  209 (243)
T ss_dssp             CTTCEEEEEEEC
T ss_pred             hcCcEEEEEEEc
Confidence            389999999864

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.71  E-value=1.1e-05  Score=74.21  Aligned_cols=41  Identities=24%  Similarity=0.252  Sum_probs=36.2

Q ss_pred             cCCCeEEEEcCCCCCcchhhhhhccccccCCC-ceeEeeecc
Q psy2684         204 DMESRVALVGPNGIGKSTFLNLLKGELTPNKG-KVLLEKVNF  244 (356)
Q Consensus       204 ~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G-~i~~~g~~~  244 (356)
                      .+|++++|+|+||+||||++..|++.+.+..| +|.+-+.+.
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~  144 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT  144 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence            47899999999999999999999999999888 787766554

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.68  E-value=1.2e-05  Score=76.14  Aligned_cols=44  Identities=18%  Similarity=0.326  Sum_probs=38.5

Q ss_pred             eeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeC
Q psy2684         240 EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKS  283 (356)
Q Consensus       240 ~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~  283 (356)
                      ++.++.+..++.++++|+|||||||++++|+|.+.+..|.+...
T Consensus       166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie  209 (361)
T 2gza_A          166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE  209 (361)
T ss_dssp             HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE
T ss_pred             HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC
Confidence            55667778899999999999999999999999999988877553

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.68  E-value=1.3e-05  Score=68.83  Aligned_cols=29  Identities=21%  Similarity=0.457  Sum_probs=24.9

Q ss_pred             cCcCCeeeeecCCCCchhhHHHHHhCCCC
Q psy2684         246 LDMESRVALVGPNGIGKSTFLNLLKGELT  274 (356)
Q Consensus       246 ~~~~~~ialvG~nG~GKsTll~~l~g~~~  274 (356)
                      ...++.++++|||||||||++++|+|...
T Consensus         4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~   32 (205)
T 3tr0_A            4 MNKANLFIISAPSGAGKTSLVRALVKALA   32 (205)
T ss_dssp             -CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred             CCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            34578899999999999999999999853

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.68  E-value=9.8e-06  Score=78.12  Aligned_cols=57  Identities=19%  Similarity=0.101  Sum_probs=48.3

Q ss_pred             ecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc
Q psy2684         183 HDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF  244 (356)
Q Consensus       183 ~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~  244 (356)
                      +++++.|+ ...  ++++|+  ++++++++|+|||||||++..|++.+.+..++|.+.+.|+
T Consensus        80 ~~L~~~~~-~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~  136 (425)
T 2ffh_A           80 EALKEALG-GEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT  136 (425)
T ss_dssp             HHHHHHTT-SSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred             HHHHHHhC-CCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccc
Confidence            46777773 322  678887  8999999999999999999999999999999999987765

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.67  E-value=1.1e-05  Score=67.39  Aligned_cols=28  Identities=39%  Similarity=0.495  Sum_probs=25.1

Q ss_pred             CCCeEEEEcCCCCCcchhhhhhcccccc
Q psy2684         205 MESRVALVGPNGIGKSTFLNLLKGELTP  232 (356)
Q Consensus       205 ~ge~~~i~G~nGsGKSTll~~l~gl~~p  232 (356)
                      .|.+++|+|+|||||||++++|++.+.+
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~   30 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM   30 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4778999999999999999999998654

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=97.67  E-value=6.3e-06  Score=83.37  Aligned_cols=61  Identities=18%  Similarity=0.189  Sum_probs=51.4

Q ss_pred             ecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCC-CceeEeeecc
Q psy2684         183 HDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK-GKVLLEKVNF  244 (356)
Q Consensus       183 ~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~-G~i~~~g~~~  244 (356)
                      ++++..| +...+++++++.+..|+.+.|+||||+|||||+++|++++.+.. |.+.+.+...
T Consensus        38 ~~l~~i~-G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~   99 (604)
T 3k1j_A           38 KLIDQVI-GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPE   99 (604)
T ss_dssp             SHHHHCC-SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTT
T ss_pred             cccceEE-CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcc
Confidence            4455556 56678999999999999999999999999999999999999887 6677766544

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=97.67  E-value=5.4e-06  Score=73.25  Aligned_cols=31  Identities=35%  Similarity=0.411  Sum_probs=27.8

Q ss_pred             CeeeeecCCCCchhhHHHHHhCCCCCCccee
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKGELTPNKGEL  280 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g~~~~~~g~~  280 (356)
                      +.++++|||||||||++++|+|.+.|..|.+
T Consensus        28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i   58 (227)
T 1qhl_A           28 LVTTLSGGNGAGKSTTMAAFVTALIPDLTLL   58 (227)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC
T ss_pred             cEEEEECCCCCCHHHHHHHHhcccccCCCeE
Confidence            5679999999999999999999998887754

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.66  E-value=2.5e-05  Score=65.96  Aligned_cols=82  Identities=15%  Similarity=0.021  Sum_probs=50.2

Q ss_pred             eeeeecCCCCchhhHHHHHhCCCCCCccee----------Ee-------CCCceEEEeecCcCCCCCCC---CCHHHHHH
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGELTPNKGEL----------RK-------SPRLRIGKFDQHSGEHLFPD---DTPCEYLM  310 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~~~~~g~~----------~~-------~~~~~ig~~~Q~~~~~l~~~---~t~~e~~~  310 (356)
                      ..+++|+|||||||++++|.+.+.+..+..          ..       .....|.+++|++...+.+.   .++...+.
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~i~r~~~  107 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPIDEDEVVIRRRVY  107 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSSSSEEEEEEEEC
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccCCcEEEEEEEEE
Confidence            678999999999999999988765543321          11       12357889999875443321   11111000


Q ss_pred             ----H---h--cCCCHHHHHHHHhhcCCCCc
Q psy2684         311 ----K---L--FNLPYEKSRRQLGMFGLPSY  332 (356)
Q Consensus       311 ----~---~--~~~~~~~~~~~L~~~~l~~~  332 (356)
                          .   .  ......++.+++..+++...
T Consensus       108 ~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~~  138 (182)
T 3kta_A          108 PDGRSSYWLNGRRATRSEILDILTAAMISPD  138 (182)
T ss_dssp             TTSCEEEEETTEEECHHHHHHHHHHTTCCTT
T ss_pred             eCCcEEEEECCeEcCHHHHHHHHHHcCCCCC
Confidence                0   0  01245677888999998753

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.64  E-value=1.1e-05  Score=74.20  Aligned_cols=59  Identities=24%  Similarity=0.130  Sum_probs=48.7

Q ss_pred             EecceeeeCCCcccccc-ceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc
Q psy2684         182 LHDVTFGYPGGKVLLEK-VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF  244 (356)
Q Consensus       182 ~~~l~~~~~~~~~~l~~-~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~  244 (356)
                      .+++...|+ +..  .+ ++|+.. +.+++++|+||+||||++..|++.+.+..++|.+-+.+.
T Consensus        77 ~~~l~~~~~-~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~  136 (297)
T 1j8m_F           77 YDELSNLFG-GDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV  136 (297)
T ss_dssp             HHHHHHHTT-CSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             HHHHHHHhc-ccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence            456666673 322  56 888876 999999999999999999999999999999999887764

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=97.60  E-value=1.2e-05  Score=68.96  Aligned_cols=37  Identities=22%  Similarity=0.441  Sum_probs=28.7

Q ss_pred             eEEEEcCCCCCcchhhhhhccccc-----cC------CCceeEeeecc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGELT-----PN------KGKVLLEKVNF  244 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~~-----p~------~G~i~~~g~~~  244 (356)
                      .++|+|+||||||||++.++|...     |+      .|.|.++|.++
T Consensus         7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~   54 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI   54 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence            579999999999999999999853     33      45666666543

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.60  E-value=2.3e-05  Score=75.00  Aligned_cols=41  Identities=20%  Similarity=0.319  Sum_probs=33.2

Q ss_pred             eecCCCeEEEEcCCCCCcchhhh--hhccccccCCC-----ceeEeee
Q psy2684         202 GLDMESRVALVGPNGIGKSTFLN--LLKGELTPNKG-----KVLLEKV  242 (356)
Q Consensus       202 ~i~~ge~~~i~G~nGsGKSTll~--~l~gl~~p~~G-----~i~~~g~  242 (356)
                      -|++|+++.|+||||||||||++  ++.+..+++.|     .+++++.
T Consensus       174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E  221 (400)
T 3lda_A          174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE  221 (400)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred             CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence            58899999999999999999999  45677777544     6677654

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.59  E-value=1.9e-05  Score=74.34  Aligned_cols=41  Identities=37%  Similarity=0.498  Sum_probs=35.8

Q ss_pred             CCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccc
Q psy2684         205 MESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFG  245 (356)
Q Consensus       205 ~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~  245 (356)
                      .+.+++|+|++|||||||++.|.|.+.+..|+|.+-+.+..
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~  113 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS  113 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence            45679999999999999999999999999999988776653

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.58  E-value=1.8e-05  Score=68.17  Aligned_cols=27  Identities=44%  Similarity=0.549  Sum_probs=22.9

Q ss_pred             cCCeeeeecCCCCchhhHHHHHhCCCC
Q psy2684         248 MESRVALVGPNGIGKSTFLNLLKGELT  274 (356)
Q Consensus       248 ~~~~ialvG~nG~GKsTll~~l~g~~~  274 (356)
                      .++.++++|||||||||++++|+|...
T Consensus         3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            3 GPRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            467899999999999999999998764

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.58  E-value=8e-06  Score=71.52  Aligned_cols=34  Identities=24%  Similarity=0.463  Sum_probs=30.4

Q ss_pred             CCeEEEEcCCCCCcchhhhhhcccc---ccCCCceeE
Q psy2684         206 ESRVALVGPNGIGKSTFLNLLKGEL---TPNKGKVLL  239 (356)
Q Consensus       206 ge~~~i~G~nGsGKSTll~~l~gl~---~p~~G~i~~  239 (356)
                      +.+++|+||+||||||++++|++.+   .++.|.++.
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~   41 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR   41 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence            5689999999999999999999877   788888876

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.58  E-value=2e-05  Score=67.76  Aligned_cols=32  Identities=22%  Similarity=0.344  Sum_probs=26.6

Q ss_pred             cCcCCeeeeecCCCCchhhHHHHHhCCCCCCc
Q psy2684         246 LDMESRVALVGPNGIGKSTFLNLLKGELTPNK  277 (356)
Q Consensus       246 ~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~  277 (356)
                      +..++.++++|+|||||||+++.|++...+..
T Consensus         3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~   34 (207)
T 2j41_A            3 NEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSY   34 (207)
T ss_dssp             -CCCCEEEEECSTTSCHHHHHHHHHHCTTCCE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHhhCCCe
Confidence            34577899999999999999999999885543

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=97.57  E-value=2e-05  Score=67.82  Aligned_cols=51  Identities=22%  Similarity=0.234  Sum_probs=45.1

Q ss_pred             CCCCcCCHHHHHH-HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy2684           4 KSTKEFSGGWRIR-VSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW   54 (356)
Q Consensus         4 ~~~~~LSgGe~~r-~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~   54 (356)
                      ..+..+|+||+|+ +..+++++.+|.++++||||+++|..+++.+.+.+.++
T Consensus       145 nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~  196 (210)
T 1pui_A          145 TKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW  196 (210)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             ecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHH
Confidence            3467899999999 88999999999999999999999999999888887653

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.57  E-value=4.5e-05  Score=64.74  Aligned_cols=104  Identities=14%  Similarity=0.025  Sum_probs=55.5

Q ss_pred             cCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCC---------CceEEEeecCcCCCCCCCCCHHHHHHHhc---
Q psy2684         246 LDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF---  313 (356)
Q Consensus       246 ~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~---------~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---  313 (356)
                      +..++.++++|+|||||||++++|++.  +..|.+....         ...++|++|...    +..++.+++....   
T Consensus         6 i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~----~~~~v~~~l~~~~~~~   79 (191)
T 1zp6_A            6 DLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ----QNRMIMQIAADVAGRY   79 (191)
T ss_dssp             CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH----HHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh----hhHHHHHHHHHHHHHH
Confidence            345677899999999999999999997  4445443211         112455555431    1233444432110   


Q ss_pred             --CCCHHHHHHHHhhcCCCCccc-cCCCCCCChHHHHHHHHHHHc
Q psy2684         314 --NLPYEKSRRQLGMFGLPSYAH-TIPIRDLSGGQKARVALAELT  355 (356)
Q Consensus       314 --~~~~~~~~~~L~~~~l~~~~~-~~~~~~LSGGqkqRvalA~~~  355 (356)
                        ......+..++..+++..... ..++..+|+|++|++++||++
T Consensus        80 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~  124 (191)
T 1zp6_A           80 AKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCL  124 (191)
T ss_dssp             HHTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHH
T ss_pred             hccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHH
Confidence              000000000011111211110 224578999999999999986

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.55  E-value=3.9e-06  Score=83.81  Aligned_cols=61  Identities=23%  Similarity=0.304  Sum_probs=49.9

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeee
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKV  242 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~  242 (356)
                      ..++++...| ....++.++++++ +|+.++|+||||+|||||+++|++...+..|.|.+.+.
T Consensus        84 ~G~~~vk~~i-~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~  144 (543)
T 3m6a_A           84 HGLEKVKERI-LEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV  144 (543)
T ss_dssp             SSCHHHHHHH-HHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred             ccHHHHHHHH-HHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence            3456666666 3445788899988 89999999999999999999999999888888877663

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.55  E-value=1.6e-05  Score=75.22  Aligned_cols=37  Identities=22%  Similarity=0.259  Sum_probs=32.8

Q ss_pred             eeccccCc--CCeeeeecCCCCchhhHHHHHhCCCCCCc
Q psy2684         241 KVNFGLDM--ESRVALVGPNGIGKSTFLNLLKGELTPNK  277 (356)
Q Consensus       241 g~~~~~~~--~~~ialvG~nG~GKsTll~~l~g~~~~~~  277 (356)
                      .+++.+..  +++++++|+||||||||+++|+|.+.+..
T Consensus       160 ~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~  198 (365)
T 1lw7_A          160 FIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTS  198 (365)
T ss_dssp             GSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred             hCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence            45566667  89999999999999999999999999877

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.54  E-value=1.7e-05  Score=66.97  Aligned_cols=40  Identities=30%  Similarity=0.249  Sum_probs=32.6

Q ss_pred             cCCCeEEEEcCCCCCcchhhhhhccccccCCC--ceeEeeecc
Q psy2684         204 DMESRVALVGPNGIGKSTFLNLLKGELTPNKG--KVLLEKVNF  244 (356)
Q Consensus       204 ~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G--~i~~~g~~~  244 (356)
                      .+|++++|+|++||||||+++.|++.+.+ .|  .+.+++..+
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~   44 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI   44 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence            36889999999999999999999998877 56  555666544

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.52  E-value=3.2e-05  Score=63.62  Aligned_cols=30  Identities=23%  Similarity=0.324  Sum_probs=23.5

Q ss_pred             ceeeecCCCeEEEEcCCCCCcchhhhhhccc
Q psy2684         199 VNFGLDMESRVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       199 ~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      .++++.+| +.+|+|||||||||++.+|.-.
T Consensus        17 ~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~   46 (149)
T 1f2t_A           17 TVVEFKEG-INLIIGQNGSGKSSLLDAILVG   46 (149)
T ss_dssp             EEEECCSE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence            34444444 8999999999999999998743

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=97.48  E-value=3.4e-05  Score=72.84  Aligned_cols=42  Identities=31%  Similarity=0.348  Sum_probs=32.7

Q ss_pred             cccccceeeecCCCeEEEEcCCCCCcchhhhhhcc--ccccCCCcee
Q psy2684         194 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG--ELTPNKGKVL  238 (356)
Q Consensus       194 ~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~g--l~~p~~G~i~  238 (356)
                      .+|++++++++   .++|+|++|||||||++.|.|  ++++..|.+.
T Consensus        25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT   68 (360)
T 3t34_A           25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT   68 (360)
T ss_dssp             CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred             cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence            57889999998   899999999999999999999  5566667654

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.48  E-value=2.1e-05  Score=67.45  Aligned_cols=41  Identities=24%  Similarity=0.446  Sum_probs=31.1

Q ss_pred             eeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhcc
Q psy2684         187 FGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       187 ~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~g  228 (356)
                      +.|++-..+++++||..+.. .++|+|++|+|||||++.+.+
T Consensus         7 ~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A            7 WIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             ------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence            45654456889999988777 579999999999999999987

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.46  E-value=1.7e-05  Score=78.03  Aligned_cols=60  Identities=20%  Similarity=0.282  Sum_probs=48.0

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF  244 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~  244 (356)
                      .+++++...| .....++++++.+++|  +.|+||||+|||||++++++...  .+.+.+++.++
T Consensus        41 ~~l~~lv~~l-~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~  100 (499)
T 2dhr_A           41 EELKEIVEFL-KNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDF  100 (499)
T ss_dssp             HHHHHHHHHH-HCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGG
T ss_pred             HHHHHHHHHh-hchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHH
Confidence            4556666556 3445889999999999  99999999999999999999874  67777777554

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.45  E-value=6.1e-05  Score=69.33  Aligned_cols=36  Identities=25%  Similarity=0.366  Sum_probs=27.6

Q ss_pred             CcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEe
Q psy2684         247 DMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRK  282 (356)
Q Consensus       247 ~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~  282 (356)
                      ..++.++++|+||+|||||+++|+|...|..|.+..
T Consensus       167 l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~  202 (301)
T 1u0l_A          167 LKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE  202 (301)
T ss_dssp             HSSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred             hcCCeEEEECCCCCcHHHHHHHhcccccccccceec
Confidence            356788999999999999999999999999888764

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.45  E-value=3.9e-05  Score=67.74  Aligned_cols=44  Identities=27%  Similarity=0.440  Sum_probs=32.1

Q ss_pred             cccceeeec---CCCeEEEEcCCCCCcchhhhhhccccccCCCceeEe
Q psy2684         196 LEKVNFGLD---MESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE  240 (356)
Q Consensus       196 l~~~sl~i~---~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~  240 (356)
                      +.++||.+.   +|.+++|.|++||||||+++.|+..+.+ .+.+...
T Consensus        13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~   59 (229)
T 4eaq_A           13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT   59 (229)
T ss_dssp             -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred             ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence            455555554   8999999999999999999999999988 6666543

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.44  E-value=3.4e-05  Score=66.62  Aligned_cols=31  Identities=19%  Similarity=0.165  Sum_probs=27.7

Q ss_pred             eeecCCCeEEEEcCCCCCcchhhhhhccccc
Q psy2684         201 FGLDMESRVALVGPNGIGKSTFLNLLKGELT  231 (356)
Q Consensus       201 l~i~~ge~~~i~G~nGsGKSTll~~l~gl~~  231 (356)
                      -++.+|.+++|+|++||||||+++.|++.+.
T Consensus        16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~   46 (207)
T 2qt1_A           16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP   46 (207)
T ss_dssp             CCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred             ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            4567899999999999999999999999763

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.41  E-value=3.8e-05  Score=64.76  Aligned_cols=43  Identities=14%  Similarity=0.139  Sum_probs=35.7

Q ss_pred             ccCCCEEEEeCCCC-CCCHHHHHHHHHHHHh---cCcEEEEEecChh
Q psy2684          24 FLEPTLLLLDEPTN-HLDLNAVIWLDNYLQT---WKKTLLVVSHDQS   66 (356)
Q Consensus        24 ~~~p~~llLDEPt~-~LD~~~~~~l~~~l~~---~~~tvi~vsHd~~   66 (356)
                      +.+|++||||||++ ++|+.....|.+++..   .+.++|++||...
T Consensus        98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~  144 (180)
T 3ec2_A           98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL  144 (180)
T ss_dssp             HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred             hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence            45899999999985 8999998888877764   3679999999753

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=97.40  E-value=2e-05  Score=78.15  Aligned_cols=34  Identities=24%  Similarity=0.306  Sum_probs=30.7

Q ss_pred             ccccceeeecCCCeEEEEcCCCCCcchhhhhhccc
Q psy2684         195 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       195 ~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      .+++++|++.+| +.+|+|+||||||||+.+|..+
T Consensus        50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l   83 (517)
T 4ad8_A           50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLL   83 (517)
T ss_dssp             TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred             ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence            567889999999 9999999999999999999655

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.39  E-value=5.2e-05  Score=70.01  Aligned_cols=36  Identities=22%  Similarity=0.403  Sum_probs=30.3

Q ss_pred             CcCCeeeeecCCCCchhhHHHHHhCCCC--CCcceeEe
Q psy2684         247 DMESRVALVGPNGIGKSTFLNLLKGELT--PNKGELRK  282 (356)
Q Consensus       247 ~~~~~ialvG~nG~GKsTll~~l~g~~~--~~~g~~~~  282 (356)
                      ..++.+|++|+|||||||++++|+|.+.  |..|.+..
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~v  115 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVEL  115 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEE
Confidence            4456799999999999999999999877  77776643

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.39  E-value=1.6e-05  Score=69.10  Aligned_cols=44  Identities=23%  Similarity=0.215  Sum_probs=37.9

Q ss_pred             eeecCCCeEEEEcCCCCCcchhhhhhccccccCCC--ceeEeeecc
Q psy2684         201 FGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG--KVLLEKVNF  244 (356)
Q Consensus       201 l~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G--~i~~~g~~~  244 (356)
                      +.+.+|.++.|+|++||||||+.+.|++.+.|..|  .+.+++..+
T Consensus        20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~   65 (211)
T 1m7g_A           20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI   65 (211)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred             ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence            45678999999999999999999999999988888  777776544

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.37  E-value=4.5e-05  Score=72.39  Aligned_cols=58  Identities=17%  Similarity=0.158  Sum_probs=46.5

Q ss_pred             HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEE
Q psy2684          16 RVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus        16 r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      +.+|+++|..+|+++++|||+   |+++...+.+.. ..+.+||.++|+.+ +...|||++.|
T Consensus       199 ~~~l~~~L~~~pd~illdE~~---d~e~~~~~l~~~-~~g~~vi~t~H~~~-~~~~~~rl~~l  256 (372)
T 2ewv_A          199 ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLHTNT-AIDTIHRIVDI  256 (372)
T ss_dssp             HHHHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-TTTCEEEECCCCCS-HHHHHHHHHHT
T ss_pred             HHHHHHHhhhCcCEEEECCCC---CHHHHHHHHHHH-hcCCEEEEEECcch-HHHHHHHHHHh
Confidence            569999999999999999999   888765544443 45779999999966 66778888665

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.36  E-value=2e-05  Score=73.73  Aligned_cols=58  Identities=19%  Similarity=0.260  Sum_probs=46.6

Q ss_pred             cceeeeCCCccccccceeeecCCCe--EEEEcCCCCCcchhhhhhccccccCCCceeEeee
Q psy2684         184 DVTFGYPGGKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKV  242 (356)
Q Consensus       184 ~l~~~~~~~~~~l~~~sl~i~~ge~--~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~  242 (356)
                      +++..+ +...+++.++..|..|++  +.+.||+|+||||+++++++.+.+..+.+.+.+.
T Consensus        23 ~~~~~~-g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~   82 (340)
T 1sxj_C           23 TLDEVY-GQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLEL   82 (340)
T ss_dssp             SGGGCC-SCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEE
T ss_pred             cHHHhc-CcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEE
Confidence            344445 455688999999999998  9999999999999999999998877666555443

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.35  E-value=0.0001  Score=69.35  Aligned_cols=35  Identities=26%  Similarity=0.382  Sum_probs=28.4

Q ss_pred             cCCeeeeecCCCCchhhHHHHHhCCCC-CCcceeEe
Q psy2684         248 MESRVALVGPNGIGKSTFLNLLKGELT-PNKGELRK  282 (356)
Q Consensus       248 ~~~~ialvG~nG~GKsTll~~l~g~~~-~~~g~~~~  282 (356)
                      .++.++++|+||+|||||+++|+|... +..|.+..
T Consensus       214 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~  249 (358)
T 2rcn_A          214 TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSN  249 (358)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC----
T ss_pred             CCCEEEEECCCCccHHHHHHHHhccccccccCCccc
Confidence            467899999999999999999999998 88887643

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.35  E-value=1.7e-07  Score=81.62  Aligned_cols=62  Identities=21%  Similarity=0.149  Sum_probs=50.8

Q ss_pred             CCCCcCCHHH----HHHHHHHHHHccCCCEEEEeCCCCC-------CCHHHHHHHHHHHHh----cCcEEEEEecCh
Q psy2684           4 KSTKEFSGGW----RIRVSLARALFLEPTLLLLDEPTNH-------LDLNAVIWLDNYLQT----WKKTLLVVSHDQ   65 (356)
Q Consensus         4 ~~~~~LSgGe----~~r~~la~~l~~~p~~llLDEPt~~-------LD~~~~~~l~~~l~~----~~~tvi~vsHd~   65 (356)
                      +++..+|+|+    +||+++|++++.+|.++++||||++       ||+.....+.+.+.+    .+.|+++++|+.
T Consensus        85 ~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~  161 (211)
T 3asz_A           85 MPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQY  161 (211)
T ss_dssp             ECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             CCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            4677899996    4688899999999999999999999       898776666655543    377999999984

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.35  E-value=5.3e-05  Score=70.86  Aligned_cols=38  Identities=29%  Similarity=0.375  Sum_probs=27.5

Q ss_pred             eEEEEcCCCCCcchhhhhhcc-ccccCCCceeEeeeccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKG-ELTPNKGKVLLEKVNFG  245 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~g-l~~p~~G~i~~~g~~~~  245 (356)
                      .+.|.||||+||||+++++++ ++.|+.|.+.++|.++.
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~   76 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV   76 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHHSCTTCCC---------
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeec
Confidence            489999999999999999999 88999999998876553

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.34  E-value=2.8e-05  Score=73.58  Aligned_cols=50  Identities=26%  Similarity=0.314  Sum_probs=37.0

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG  235 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G  235 (356)
                      .+.+.+++..| +.+.+.++++|.|      +|+|++|+|||||++.|.+...+..+
T Consensus        17 ~v~~~~l~~~~-~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~   66 (361)
T 2qag_A           17 YVGFANLPNQV-HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPER   66 (361)
T ss_dssp             ----CCHHHHH-HTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----
T ss_pred             eEEeccchHHh-CCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCC
Confidence            57889999988 5667889999876      99999999999999999887655444

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.33  E-value=7.3e-05  Score=65.92  Aligned_cols=46  Identities=17%  Similarity=0.146  Sum_probs=32.7

Q ss_pred             cccccc-eeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeE
Q psy2684         194 VLLEKV-NFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL  239 (356)
Q Consensus       194 ~~l~~~-sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~  239 (356)
                      +.|+.+ .--+++|+++.|+||||||||||+..++....+..+.+.+
T Consensus        10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~   56 (247)
T 2dr3_A           10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIY   56 (247)
T ss_dssp             TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence            456665 5678999999999999999999966554433333444444

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.32  E-value=5.4e-05  Score=67.32  Aligned_cols=60  Identities=23%  Similarity=0.354  Sum_probs=40.7

Q ss_pred             CCeeeeecCCCCchhhHHHHHh---CCCCCCcceeEeCC-------CceEEEeecCcCCCCCCCCCHHHHHH
Q psy2684         249 ESRVALVGPNGIGKSTFLNLLK---GELTPNKGELRKSP-------RLRIGKFDQHSGEHLFPDDTPCEYLM  310 (356)
Q Consensus       249 ~~~ialvG~nG~GKsTll~~l~---g~~~~~~g~~~~~~-------~~~ig~~~Q~~~~~l~~~~t~~e~~~  310 (356)
                      .+.++++|+|||||||++++|+   |...++.|.+....       ...+++++|+.  .+++..++.+++.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~v~~~l~   96 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKS--LLVPDHVITRLMM   96 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTT--CCCCHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcC--CCCCHHHHHHHHH
Confidence            4689999999999999999999   99888776653210       11233445553  3455556666553

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.26  E-value=6.7e-05  Score=74.13  Aligned_cols=84  Identities=25%  Similarity=0.299  Sum_probs=54.1

Q ss_pred             ceeeecCCCeEEEE-cCC--CCCcchhhhhhccccc-c----CCCce---eEeeeccccCcCCeeeeecCCCCchhhHHH
Q psy2684         199 VNFGLDMESRVALV-GPN--GIGKSTFLNLLKGELT-P----NKGKV---LLEKVNFGLDMESRVALVGPNGIGKSTFLN  267 (356)
Q Consensus       199 ~sl~i~~ge~~~i~-G~n--GsGKSTll~~l~gl~~-p----~~G~i---~~~g~~~~~~~~~~ialvG~nG~GKsTll~  267 (356)
                      ++..++.|.++.++ ||.  --|-+-.+|.+...-. +    ..|.+   .+++.++.+..++.++++|+|||||||+++
T Consensus       199 ~~~~lp~g~Rv~~~~~~~~~~~G~~i~IR~~~~~~~~~~~l~~~G~~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~  278 (511)
T 2oap_1          199 VDATLPDGSRLQATFGTEVTPRGSSFTIRKFTIEPLTPIDLIEKGTVPSGVLAYLWLAIEHKFSAIVVGETASGKTTTLN  278 (511)
T ss_dssp             EEEEETTTEEEEEECSSSSCTTCSEEEEEECCCCCCCHHHHHHTTSSCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHHH
T ss_pred             eeeecCCCeEEEEEECCCccCCCCEEEEEecCCCCCChhhHHhcCCCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHH
Confidence            34567788888777 543  2244444444322100 0    11221   123344556678889999999999999999


Q ss_pred             HHhCCCCCCcceeEe
Q psy2684         268 LLKGELTPNKGELRK  282 (356)
Q Consensus       268 ~l~g~~~~~~g~~~~  282 (356)
                      +++|.+.+..+.+..
T Consensus       279 aL~~~i~~~~giiti  293 (511)
T 2oap_1          279 AIMMFIPPDAKVVSI  293 (511)
T ss_dssp             HHGGGSCTTCCEEEE
T ss_pred             HHHhhCCCCCCEEEE
Confidence            999999998887653

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.25  E-value=9.9e-05  Score=62.39  Aligned_cols=27  Identities=26%  Similarity=0.501  Sum_probs=23.8

Q ss_pred             cCCeeeeecCCCCchhhHHHHHhCCCC
Q psy2684         248 MESRVALVGPNGIGKSTFLNLLKGELT  274 (356)
Q Consensus       248 ~~~~ialvG~nG~GKsTll~~l~g~~~  274 (356)
                      .++.++++|||||||||+++.|++...
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            456789999999999999999998765

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.25  E-value=5.2e-05  Score=69.94  Aligned_cols=37  Identities=27%  Similarity=0.453  Sum_probs=23.4

Q ss_pred             cCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEe
Q psy2684         246 LDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRK  282 (356)
Q Consensus       246 ~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~  282 (356)
                      +..++.++++|+||+|||||+++|+|...+..|.+..
T Consensus       170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~  206 (307)
T 1t9h_A          170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE  206 (307)
T ss_dssp             GGTTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHhcccccccccceee
Confidence            3456789999999999999999999999888887753

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.23  E-value=0.00012  Score=62.92  Aligned_cols=31  Identities=35%  Similarity=0.425  Sum_probs=25.4

Q ss_pred             eEEEEcCCCCCcchhhhhhccccccCCCceeEeeec
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN  243 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~  243 (356)
                      +++|+|+|||||||+.++|+++     |..+++.-+
T Consensus         4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~   34 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADV   34 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHC-----CCcccchHH
Confidence            5899999999999999999984     666665433

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.23  E-value=0.00016  Score=66.54  Aligned_cols=33  Identities=30%  Similarity=0.437  Sum_probs=28.1

Q ss_pred             CCeeeeecCCCCchhhHHHHHhCCCCCCcceeEe
Q psy2684         249 ESRVALVGPNGIGKSTFLNLLKGELTPNKGELRK  282 (356)
Q Consensus       249 ~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~  282 (356)
                      ++.++++|+||+|||||+++|+ ...+..|.+..
T Consensus       165 G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~  197 (302)
T 2yv5_A          165 GFICILAGPSGVGKSSILSRLT-GEELRTQEVSE  197 (302)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC--
T ss_pred             CcEEEEECCCCCCHHHHHHHHH-HhhCccccccc
Confidence            4567899999999999999999 99998888765

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.21  E-value=0.0001  Score=68.02  Aligned_cols=79  Identities=20%  Similarity=0.143  Sum_probs=50.8

Q ss_pred             cCcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHh
Q psy2684         246 LDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLG  325 (356)
Q Consensus       246 ~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~  325 (356)
                      ...++.++++|+||+||||++..+++.+.+..+        ++.++..+...     ....           +....+++
T Consensus       101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~--------kV~lv~~D~~r-----~~a~-----------eqL~~~~~  156 (306)
T 1vma_A          101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGK--------SVVLAAADTFR-----AAAI-----------EQLKIWGE  156 (306)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTC--------CEEEEEECTTC-----HHHH-----------HHHHHHHH
T ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCC--------EEEEEcccccc-----HHHH-----------HHHHHHHH
Confidence            345678999999999999999999987765433        35566655310     0011           12334555


Q ss_pred             hcCCCCccccCCCCCCChHHHHHH---HHHHH
Q psy2684         326 MFGLPSYAHTIPIRDLSGGQKARV---ALAEL  354 (356)
Q Consensus       326 ~~~l~~~~~~~~~~~LSGGqkqRv---alA~~  354 (356)
                      .++++-      +..+|||+.+++   +|+++
T Consensus       157 ~~gl~~------~~~~s~~~~~~v~~~al~~a  182 (306)
T 1vma_A          157 RVGATV------ISHSEGADPAAVAFDAVAHA  182 (306)
T ss_dssp             HHTCEE------ECCSTTCCHHHHHHHHHHHH
T ss_pred             HcCCcE------EecCCccCHHHHHHHHHHHH
Confidence            666532      235789999998   66654

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.21  E-value=9.3e-05  Score=62.68  Aligned_cols=42  Identities=26%  Similarity=0.192  Sum_probs=34.6

Q ss_pred             eecCCCeEEEEcCCCCCcchhhhhhccccccCCCcee-Eeeec
Q psy2684         202 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL-LEKVN  243 (356)
Q Consensus       202 ~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~-~~g~~  243 (356)
                      ...+|.++.|+|++||||||+.+.|+..+.+..+.+. +++..
T Consensus         9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~   51 (186)
T 2yvu_A            9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW   51 (186)
T ss_dssp             CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred             ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence            3457889999999999999999999999988777764 45433

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.19  E-value=0.00013  Score=70.29  Aligned_cols=35  Identities=29%  Similarity=0.346  Sum_probs=30.0

Q ss_pred             CcCCeeeeecCCCCchhhHHHHHhCCCCCCcceeE
Q psy2684         247 DMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR  281 (356)
Q Consensus       247 ~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~  281 (356)
                      ..+..++++|||||||||++++++|.+.+..|.+.
T Consensus       165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~  199 (418)
T 1p9r_A          165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNIL  199 (418)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEE
T ss_pred             hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEE
Confidence            34567899999999999999999999888777664

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.18  E-value=0.00026  Score=65.22  Aligned_cols=54  Identities=17%  Similarity=0.172  Sum_probs=41.8

Q ss_pred             CCHHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecCh
Q psy2684           9 FSGGWRIRVSLARALFLEPT--LLLLDEPTNHLDLNAVIWLDNYLQTWKKTLLVVSHDQ   65 (356)
Q Consensus         9 LSgGe~~r~~la~~l~~~p~--~llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~   65 (356)
                      ++..++||++||++++.+|+  +|.|| |+++.+  ....+..+.+..+.|+|++||+-
T Consensus       203 ~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~--~~~~~~~~~~~~~~t~iivTh~d  258 (304)
T 1rj9_A          203 MEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQN--GLEQAKKFHEAVGLTGVIVTKLD  258 (304)
T ss_dssp             HHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTH--HHHHHHHHHHHHCCSEEEEECTT
T ss_pred             HHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHH--HHHHHHHHHHHcCCcEEEEECCc
Confidence            45566899999999999999  77788 666654  33455566666789999999983

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.17  E-value=0.00035  Score=65.23  Aligned_cols=45  Identities=18%  Similarity=0.250  Sum_probs=37.4

Q ss_pred             HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHH
Q psy2684          23 LFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFL   68 (356)
Q Consensus        23 l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l   68 (356)
                      +..+|+|+|||||++ ||+.+...|.+.+.+.  +.++|++||+.+.+
T Consensus       131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l  177 (354)
T 1sxj_E          131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI  177 (354)
T ss_dssp             ---CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred             cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHH
Confidence            356899999999999 9999999999999876  46899999997644

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.14  E-value=0.00015  Score=61.46  Aligned_cols=32  Identities=16%  Similarity=0.332  Sum_probs=26.4

Q ss_pred             cceeeecCCCeEEEEcCCCCCcchhhhhhccc
Q psy2684         198 KVNFGLDMESRVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       198 ~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      ++|++..++.+++|+|++||||||+.+.|+..
T Consensus         2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            57888899999999999999999999999875

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.12  E-value=0.00016  Score=62.45  Aligned_cols=30  Identities=23%  Similarity=0.337  Sum_probs=23.1

Q ss_pred             ceeeecCCCeEEEEcCCCCCcchhhhhhccc
Q psy2684         199 VNFGLDMESRVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       199 ~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      .++++.+ .+.+|+|||||||||++.+|.-.
T Consensus        17 ~~i~f~~-~~~~I~G~NgsGKStil~ai~~~   46 (203)
T 3qks_A           17 TVVEFKE-GINLIIGQNGSGKSSLLDAILVG   46 (203)
T ss_dssp             EEEECCS-EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEeCC-CeEEEEcCCCCCHHHHHHHHHHH
Confidence            3444444 48999999999999999987543

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.11  E-value=0.0001  Score=65.99  Aligned_cols=34  Identities=24%  Similarity=0.403  Sum_probs=28.8

Q ss_pred             cCCeeeeecCCCCchhhHHHHHh---CCCCCCcceeE
Q psy2684         248 MESRVALVGPNGIGKSTFLNLLK---GELTPNKGELR  281 (356)
Q Consensus       248 ~~~~ialvG~nG~GKsTll~~l~---g~~~~~~g~~~  281 (356)
                      .+..++++|+|||||||++++|+   |...++.|.+.
T Consensus        26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~   62 (252)
T 4e22_A           26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY   62 (252)
T ss_dssp             TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence            45689999999999999999999   88777766654

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.10  E-value=0.00081  Score=64.27  Aligned_cols=57  Identities=9%  Similarity=0.086  Sum_probs=42.1

Q ss_pred             cCCCEEEEeCCCCCCCHHH----------------HHHHHHHHHhcCcEEEEEecCh-------------------hHHh
Q psy2684          25 LEPTLLLLDEPTNHLDLNA----------------VIWLDNYLQTWKKTLLVVSHDQ-------------------SFLN   69 (356)
Q Consensus        25 ~~p~~llLDEPt~~LD~~~----------------~~~l~~~l~~~~~tvi~vsHd~-------------------~~l~   69 (356)
                      .+|+++++|||++.+|...                ...|.++.++++.|||+|+|..                   ..+.
T Consensus       272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~  351 (400)
T 3lda_A          272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA  351 (400)
T ss_dssp             SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred             cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence            5799999999999999631                1234555567789999999993                   2356


Q ss_pred             hhcCEEEEEeCC
Q psy2684          70 NICTDIIHLDMK   81 (356)
Q Consensus        70 ~~~~~i~~l~~g   81 (356)
                      ..||.+++|+.+
T Consensus       352 ~~ad~vl~L~~~  363 (400)
T 3lda_A          352 YSSTTRLGFKKG  363 (400)
T ss_dssp             HHCSEEEEEEEC
T ss_pred             HhcceEEEEEec
Confidence            778999999865

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.07  E-value=0.00016  Score=61.27  Aligned_cols=23  Identities=35%  Similarity=0.538  Sum_probs=20.6

Q ss_pred             CCeeeeecCCCCchhhHHHHHhC
Q psy2684         249 ESRVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       249 ~~~ialvG~nG~GKsTll~~l~g  271 (356)
                      ++.++++|+|||||||+++.|++
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhc
Confidence            35678999999999999999986

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.06  E-value=0.00013  Score=61.97  Aligned_cols=33  Identities=24%  Similarity=0.467  Sum_probs=20.5

Q ss_pred             ccccceeeecCCCeEEEEcCCCCCcchhhhhhcc
Q psy2684         195 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       195 ~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~g  228 (356)
                      +++++++..+.. .++|+|++|+|||||++.+.+
T Consensus        13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred             HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence            678888887766 789999999999999999987

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.06  E-value=0.00011  Score=67.18  Aligned_cols=30  Identities=23%  Similarity=0.242  Sum_probs=26.8

Q ss_pred             cCCCeEEEEcCCCCCcchhhhhhccccccC
Q psy2684         204 DMESRVALVGPNGIGKSTFLNLLKGELTPN  233 (356)
Q Consensus       204 ~~ge~~~i~G~nGsGKSTll~~l~gl~~p~  233 (356)
                      .++.+++|+|++|||||||++.|.+++.+.
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~   58 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK   58 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence            356789999999999999999999999874

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.04  E-value=0.00026  Score=60.70  Aligned_cols=42  Identities=24%  Similarity=0.272  Sum_probs=23.6

Q ss_pred             cCCCceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCC
Q psy2684         232 PNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       232 p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      |..-+...++.++.+..+..+.++|++||||||+.+.|++.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A            8 SSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             ----------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            333445567788888888999999999999999999998643

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=97.02  E-value=0.00021  Score=66.86  Aligned_cols=28  Identities=25%  Similarity=0.410  Sum_probs=21.9

Q ss_pred             ceeeecCCCeEEEEcCCCCCcchhhhhhc
Q psy2684         199 VNFGLDMESRVALVGPNGIGKSTFLNLLK  227 (356)
Q Consensus       199 ~sl~i~~ge~~~i~G~nGsGKSTll~~l~  227 (356)
                      ..+++.+ .+.+|+|||||||||++.+|.
T Consensus        17 ~~i~f~~-~~~~i~G~NGsGKS~lleAi~   44 (339)
T 3qkt_A           17 TVVEFKE-GINLIIGQNGSGKSSLLDAIL   44 (339)
T ss_dssp             EEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEcCCC-CeEEEECCCCCCHHHHHHHHH
Confidence            3444444 488999999999999999763

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.01  E-value=0.00031  Score=60.80  Aligned_cols=28  Identities=25%  Similarity=0.386  Sum_probs=24.7

Q ss_pred             cCCeeeeecCCCCchhhHHHHHhCCCCC
Q psy2684         248 MESRVALVGPNGIGKSTFLNLLKGELTP  275 (356)
Q Consensus       248 ~~~~ialvG~nG~GKsTll~~l~g~~~~  275 (356)
                      .++.++++|||||||||+++.|++...+
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~   34 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKDPET   34 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence            4667899999999999999999998765

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.01  E-value=0.00019  Score=61.82  Aligned_cols=30  Identities=23%  Similarity=0.520  Sum_probs=26.0

Q ss_pred             eecCCCeEEEEcCCCCCcchhhhhhccccc
Q psy2684         202 GLDMESRVALVGPNGIGKSTFLNLLKGELT  231 (356)
Q Consensus       202 ~i~~ge~~~i~G~nGsGKSTll~~l~gl~~  231 (356)
                      .+.+|.+++|+||+||||||+.+.|...++
T Consensus         8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A            8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            456899999999999999999999987663

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.00  E-value=0.00018  Score=67.74  Aligned_cols=38  Identities=21%  Similarity=0.214  Sum_probs=34.0

Q ss_pred             eecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeE
Q psy2684         202 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL  239 (356)
Q Consensus       202 ~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~  239 (356)
                      -+++|+++.|.||+|||||||+..++....+..|.+.|
T Consensus        57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~Vly   94 (356)
T 3hr8_A           57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAF   94 (356)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence            37899999999999999999999999998888887644

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.00  E-value=0.00022  Score=69.05  Aligned_cols=37  Identities=30%  Similarity=0.580  Sum_probs=30.5

Q ss_pred             eEEEEcCCCCCcchhhhhhccccc------------cCCCceeEeeecc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGELT------------PNKGKVLLEKVNF  244 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~~------------p~~G~i~~~g~~~  244 (356)
                      .++|+|+||+|||||++.|.|...            +..|.+.++|.++
T Consensus       182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~  230 (439)
T 1mky_A          182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY  230 (439)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence            689999999999999999999854            5667777777654

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.99  E-value=0.00027  Score=60.69  Aligned_cols=27  Identities=26%  Similarity=0.399  Sum_probs=23.2

Q ss_pred             CcCCeeeeecCCCCchhhHHHHHhCCC
Q psy2684         247 DMESRVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       247 ~~~~~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      ..++.++++|+|||||||++++|++.+
T Consensus        27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           27 EPTRHVVVMGVSGSGKTTIAHGVADET   53 (200)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            356789999999999999999998764

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.96  E-value=0.00023  Score=61.10  Aligned_cols=34  Identities=21%  Similarity=0.321  Sum_probs=26.9

Q ss_pred             CCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeec
Q psy2684         206 ESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN  243 (356)
Q Consensus       206 ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~  243 (356)
                      ..+++|+|++||||||+.+.|++.+    |...+++.+
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~   51 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDA   51 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCc
Confidence            3579999999999999999998875    455555443

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.96  E-value=8.1e-05  Score=71.65  Aligned_cols=58  Identities=12%  Similarity=0.180  Sum_probs=43.7

Q ss_pred             CCHHHHHHHHHHHHHccCCC---EEEEeCCC-CCCCHHHHHHHHHHHHhcCcEEEEEecChhHH
Q psy2684           9 FSGGWRIRVSLARALFLEPT---LLLLDEPT-NHLDLNAVIWLDNYLQTWKKTLLVVSHDQSFL   68 (356)
Q Consensus         9 LSgGe~~r~~la~~l~~~p~---~llLDEPt-~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l   68 (356)
                      ++.+.++|++||++++.+|+   ||++|||| ++||+....|+..+ .. +.+||+|.|..+.+
T Consensus       119 ~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L-~~-~v~iIlVinK~Dll  180 (418)
T 2qag_C          119 FEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL-HE-KVNIIPLIAKADTL  180 (418)
T ss_dssp             HHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHH-TT-TSEEEEEEESTTSS
T ss_pred             HHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHH-hc-cCcEEEEEEcccCc
Confidence            45667778889999999999   99999999 69999887777654 33 67888888875543

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=96.95  E-value=0.00028  Score=58.67  Aligned_cols=26  Identities=42%  Similarity=0.589  Sum_probs=22.8

Q ss_pred             CCeeeeecCCCCchhhHHHHHhCCCC
Q psy2684         249 ESRVALVGPNGIGKSTFLNLLKGELT  274 (356)
Q Consensus       249 ~~~ialvG~nG~GKsTll~~l~g~~~  274 (356)
                      +..++++|+|||||||+++.|++.+.
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l~   29 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQLN   29 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            46789999999999999999998654

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=96.93  E-value=0.00043  Score=68.14  Aligned_cols=47  Identities=17%  Similarity=0.116  Sum_probs=40.4

Q ss_pred             cceeeecCCCeEEEEcCCCCCcchhhhhhcc--ccccCCCceeEeeecc
Q psy2684         198 KVNFGLDMESRVALVGPNGIGKSTFLNLLKG--ELTPNKGKVLLEKVNF  244 (356)
Q Consensus       198 ~~sl~i~~ge~~~i~G~nGsGKSTll~~l~g--l~~p~~G~i~~~g~~~  244 (356)
                      .+++++.++..+.|+|++||||||++++|..  ++.++.+++.+-..|+
T Consensus       159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDp  207 (512)
T 2ius_A          159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDP  207 (512)
T ss_dssp             EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECC
T ss_pred             EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECC
Confidence            4788999999999999999999999999876  6677778888777665

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=96.93  E-value=0.00024  Score=67.14  Aligned_cols=35  Identities=23%  Similarity=0.461  Sum_probs=27.1

Q ss_pred             EEEEcCCCCCcchhhhhhccccc-----------cCCCceeEeeec
Q psy2684         209 VALVGPNGIGKSTFLNLLKGELT-----------PNKGKVLLEKVN  243 (356)
Q Consensus       209 ~~i~G~nGsGKSTll~~l~gl~~-----------p~~G~i~~~g~~  243 (356)
                      ++|+|++|||||||++.|+|...           |..|.+.++|..
T Consensus       182 V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~  227 (364)
T 2qtf_A          182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRK  227 (364)
T ss_dssp             EEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEE
T ss_pred             EEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEE
Confidence            89999999999999999999876           445666665544

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.92  E-value=0.00022  Score=61.18  Aligned_cols=22  Identities=36%  Similarity=0.587  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCcchhhhhhccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      +++|+|+|||||||+.+.|+++
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~~   24 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFREL   24 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHHHC
Confidence            6899999999999999999983

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.92  E-value=8.8e-05  Score=62.45  Aligned_cols=93  Identities=12%  Similarity=0.095  Sum_probs=55.3

Q ss_pred             CeeeeecCCCCchhhHHHHHhCCCCCC---cceeEeCC--------------C-ceEE----EeecCcCCCCCCCCCHHH
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKGELTPN---KGELRKSP--------------R-LRIG----KFDQHSGEHLFPDDTPCE  307 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g~~~~~---~g~~~~~~--------------~-~~ig----~~~Q~~~~~l~~~~t~~e  307 (356)
                      +.++++|+|||||||+++.|++.+.+.   .|.+....              + ..+|    ++.|++.. +..+.. .+
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~-~i~~~~-~~   80 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLA-FIRRVS-EE   80 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEE-EEEECC-HH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEE-EEecCC-hh
Confidence            468999999999999999999998776   55553210              0 1244    56665421 100000 00


Q ss_pred             HHHHhcCCCHHHHHHHHhh-c-CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         308 YLMKLFNLPYEKSRRQLGM-F-GLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       308 ~~~~~~~~~~~~~~~~L~~-~-~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .        ...+.+++.. + |++...    ...|||||+||++|||+++
T Consensus        81 ~--------~a~l~~~i~~~l~g~dt~i----~EglSgGq~qri~lARall  119 (171)
T 2f1r_A           81 E--------GNDLDWIYERYLSDYDLVI----TEGFSKAGKDRIVVVKKPE  119 (171)
T ss_dssp             H--------HTCHHHHHHHHTTTCSEEE----EESCGGGCCCEEEECSSGG
T ss_pred             h--------hhCHHHHHHhhCCCCCEEE----ECCcCCCCCcEEEEEeccc
Confidence            0        0023445544 3 332222    2359999999999999864

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.90  E-value=0.00014  Score=68.14  Aligned_cols=38  Identities=32%  Similarity=0.376  Sum_probs=34.2

Q ss_pred             cccccceeeecCCCe--EEEEcCCCCCcchhhhhhccccc
Q psy2684         194 VLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELT  231 (356)
Q Consensus       194 ~~l~~~sl~i~~ge~--~~i~G~nGsGKSTll~~l~gl~~  231 (356)
                      .+++.+++.+.+|++  ++|+|++||||||+.++|++.+.
T Consensus        10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A           10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            477888999999999  99999999999999999998753

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=96.89  E-value=0.00077  Score=68.05  Aligned_cols=58  Identities=17%  Similarity=0.207  Sum_probs=43.7

Q ss_pred             ccCCCEEEEeCC------CCCCCHHHHHHHHHHHHhc-----CcEEEEEecChhHH--------hhh----cCEEEEEeC
Q psy2684          24 FLEPTLLLLDEP------TNHLDLNAVIWLDNYLQTW-----KKTLLVVSHDQSFL--------NNI----CTDIIHLDM   80 (356)
Q Consensus        24 ~~~p~~llLDEP------t~~LD~~~~~~l~~~l~~~-----~~tvi~vsHd~~~l--------~~~----~~~i~~l~~   80 (356)
                      ...|+++|+|||      |++||+.....+.++++.+     +.++++++||.+..        ..+    +..|+++..
T Consensus       144 ~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK  223 (608)
T 3szr_A          144 RDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTK  223 (608)
T ss_dssp             SSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEEC
T ss_pred             CCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecc
Confidence            346999999999      9999999988888877775     46889999997743        222    356788875


Q ss_pred             C
Q psy2684          81 K   81 (356)
Q Consensus        81 g   81 (356)
                      +
T Consensus       224 ~  224 (608)
T 3szr_A          224 P  224 (608)
T ss_dssp             G
T ss_pred             h
Confidence            4

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=96.87  E-value=0.0003  Score=66.96  Aligned_cols=40  Identities=30%  Similarity=0.603  Sum_probs=31.3

Q ss_pred             ecCCCeEEEEcCCCCCcchhhhhhccc-----------cccCCCceeEeee
Q psy2684         203 LDMESRVALVGPNGIGKSTFLNLLKGE-----------LTPNKGKVLLEKV  242 (356)
Q Consensus       203 i~~ge~~~i~G~nGsGKSTll~~l~gl-----------~~p~~G~i~~~g~  242 (356)
                      +..+..++|+|++|+|||||++.|+|.           +.|..|.+.+.+.
T Consensus        19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~   69 (396)
T 2ohf_A           19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE   69 (396)
T ss_dssp             SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence            456778999999999999999999998           5666677766543

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.85  E-value=0.0007  Score=58.20  Aligned_cols=28  Identities=21%  Similarity=0.239  Sum_probs=24.1

Q ss_pred             cCcCCeeeeecCCCCchhhHHHHHhCCC
Q psy2684         246 LDMESRVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       246 ~~~~~~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      +..+..++++|++||||||+++.|.+.+
T Consensus        18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           18 GSKTFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             SCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            3456778999999999999999999864

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=96.83  E-value=0.00031  Score=58.55  Aligned_cols=26  Identities=35%  Similarity=0.512  Sum_probs=23.2

Q ss_pred             CCCeEEEEcCCCCCcchhhhhhcccc
Q psy2684         205 MESRVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       205 ~ge~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      +|..++|+|++|+|||||++.+.+..
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57789999999999999999999865

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=96.76  E-value=0.00034  Score=58.68  Aligned_cols=22  Identities=50%  Similarity=0.844  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCcchhhhhhccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      .++|+|++|+|||||++.+.+.
T Consensus         9 ~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            9 EIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999984

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.76  E-value=0.00031  Score=63.69  Aligned_cols=24  Identities=33%  Similarity=0.493  Sum_probs=22.0

Q ss_pred             eeeecCCCCchhhHHHHHhCCCCC
Q psy2684         252 VALVGPNGIGKSTFLNLLKGELTP  275 (356)
Q Consensus       252 ialvG~nG~GKsTll~~l~g~~~~  275 (356)
                      ++++|||||||||+++++++...+
T Consensus        47 vlL~Gp~GtGKTtLakala~~~~~   70 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANESGL   70 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHHTTC
T ss_pred             EEEECCCCCcHHHHHHHHHHHcCC
Confidence            889999999999999999997655

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.75  E-value=0.0005  Score=60.44  Aligned_cols=27  Identities=30%  Similarity=0.324  Sum_probs=24.0

Q ss_pred             cCcCCeeeeecCCCCchhhHHHHHhCC
Q psy2684         246 LDMESRVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       246 ~~~~~~ialvG~nG~GKsTll~~l~g~  272 (356)
                      ...+..++++|+|||||||++++|++.
T Consensus        17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           17 GTQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence            355778999999999999999999986

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.75  E-value=0.00051  Score=58.88  Aligned_cols=29  Identities=28%  Similarity=0.235  Sum_probs=25.3

Q ss_pred             cCcCCeeeeecCCCCchhhHHHHHhCCCC
Q psy2684         246 LDMESRVALVGPNGIGKSTFLNLLKGELT  274 (356)
Q Consensus       246 ~~~~~~ialvG~nG~GKsTll~~l~g~~~  274 (356)
                      ...++.++++|+|||||||+++.|++.+.
T Consensus        22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~   50 (200)
T 3uie_A           22 DQKGCVIWVTGLSGSGKSTLACALNQMLY   50 (200)
T ss_dssp             TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            35677899999999999999999998765

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.73  E-value=0.00041  Score=61.92  Aligned_cols=41  Identities=22%  Similarity=0.353  Sum_probs=32.2

Q ss_pred             eecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc
Q psy2684         202 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF  244 (356)
Q Consensus       202 ~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~  244 (356)
                      ....+.++.|+|++||||||+.+.|+..+.  .+.+.+++..+
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~   68 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF   68 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence            455677899999999999999999988764  24566666554

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=96.72  E-value=0.00054  Score=57.61  Aligned_cols=25  Identities=32%  Similarity=0.530  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCcchhhhhhcccccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGELTP  232 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~~p  232 (356)
                      .++|+|++|+|||||++.+.+...+
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~~~~   28 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKTKKS   28 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC---
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCc
Confidence            5899999999999999999996433

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.71  E-value=0.0015  Score=53.37  Aligned_cols=42  Identities=21%  Similarity=0.138  Sum_probs=30.7

Q ss_pred             HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcE-EEEEecC
Q psy2684          22 ALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT---WKKT-LLVVSHD   64 (356)
Q Consensus        22 ~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~---~~~t-vi~vsHd   64 (356)
                      +++.+|++|+||||+. +|....+.|.+++..   .+.+ +|++||.
T Consensus        79 ~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~  124 (149)
T 2kjq_A           79 DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY  124 (149)
T ss_dssp             GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred             HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence            3467899999999998 665556667666654   3567 8888884

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=96.71  E-value=0.00035  Score=64.22  Aligned_cols=26  Identities=42%  Similarity=0.569  Sum_probs=23.1

Q ss_pred             CCCeEEEEcCCCCCcchhhhhhcccc
Q psy2684         205 MESRVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       205 ~ge~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      ++.+++|+|++|+|||||++.|.|..
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~   32 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQK   32 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence            44589999999999999999999974

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.69  E-value=0.00052  Score=62.94  Aligned_cols=41  Identities=24%  Similarity=0.284  Sum_probs=33.0

Q ss_pred             cCCeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCc
Q psy2684         248 MESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHS  295 (356)
Q Consensus       248 ~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~  295 (356)
                      .++.++++|+||+||||++..|++.+.+..|       .++.++++++
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-------~~V~lv~~D~  144 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-------KKIAFITTDT  144 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-------CCEEEEECCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-------CEEEEEecCc
Confidence            4567899999999999999999987765444       3578888875

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=96.68  E-value=0.00069  Score=55.84  Aligned_cols=23  Identities=48%  Similarity=0.764  Sum_probs=21.2

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      .++|+|++|+|||||++.+.|..
T Consensus         5 ~v~lvG~~gvGKStL~~~l~~~~   27 (165)
T 2wji_A            5 EIALIGNPNVGKSTIFNALTGEN   27 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999864

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.68  E-value=0.00041  Score=59.64  Aligned_cols=32  Identities=22%  Similarity=0.167  Sum_probs=25.6

Q ss_pred             cCCeeeeecCCCCchhhHHHHHhCCCCCCcce
Q psy2684         248 MESRVALVGPNGIGKSTFLNLLKGELTPNKGE  279 (356)
Q Consensus       248 ~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~  279 (356)
                      .+..++++|+|||||||+++.+.+.+.+..+.
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~   52 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGIS   52 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCe
Confidence            45678999999999999999999876544443

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=96.66  E-value=0.00067  Score=57.52  Aligned_cols=25  Identities=32%  Similarity=0.575  Sum_probs=22.5

Q ss_pred             eeeeecCCCCchhhHHHHHhCCCCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGELTP  275 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~~~  275 (356)
                      +++++|+||+|||||++.+++...+
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~~~~   55 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRNEFN   55 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCC
Confidence            6899999999999999999987654

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.65  E-value=0.0053  Score=53.68  Aligned_cols=56  Identities=20%  Similarity=0.191  Sum_probs=42.9

Q ss_pred             cCCCEEEEeCCCCCC--CHHH----HHHHHHHHHhcCcEEEEEecChhH--------HhhhcCEEEEEeC
Q psy2684          25 LEPTLLLLDEPTNHL--DLNA----VIWLDNYLQTWKKTLLVVSHDQSF--------LNNICTDIIHLDM   80 (356)
Q Consensus        25 ~~p~~llLDEPt~~L--D~~~----~~~l~~~l~~~~~tvi~vsHd~~~--------l~~~~~~i~~l~~   80 (356)
                      .+|+++++|+|+..+  |+..    ...|.+++++++.|||+++|....        +.+.||.|+.|+.
T Consensus       127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~  196 (247)
T 2dr3_A          127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL  196 (247)
T ss_dssp             HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred             hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence            589999999999988  5422    234566667788999999998765        4577899999974

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.63  E-value=0.00074  Score=58.04  Aligned_cols=31  Identities=23%  Similarity=0.410  Sum_probs=25.1

Q ss_pred             cccCcCCeeeeecCCCCchhhHHHHHhCCCC
Q psy2684         244 FGLDMESRVALVGPNGIGKSTFLNLLKGELT  274 (356)
Q Consensus       244 ~~~~~~~~ialvG~nG~GKsTll~~l~g~~~  274 (356)
                      +....++.++++||||+|||||++.|++...
T Consensus        14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            3445677899999999999999999998654

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.62  E-value=0.00054  Score=57.72  Aligned_cols=35  Identities=26%  Similarity=0.314  Sum_probs=27.4

Q ss_pred             CeEEEEcCCCCCcchhhhhhccccccCC---CceeEee
Q psy2684         207 SRVALVGPNGIGKSTFLNLLKGELTPNK---GKVLLEK  241 (356)
Q Consensus       207 e~~~i~G~nGsGKSTll~~l~gl~~p~~---G~i~~~g  241 (356)
                      .+++|+|++|||||||++.|.+.+.+..   |.|..++
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~   44 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH   44 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence            5789999999999999999999876543   4444443

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=96.61  E-value=0.00038  Score=71.04  Aligned_cols=38  Identities=37%  Similarity=0.438  Sum_probs=30.6

Q ss_pred             eeeecCCCeEEEEcCCCCCcchhhhhhcccccc--CCCce
Q psy2684         200 NFGLDMESRVALVGPNGIGKSTFLNLLKGELTP--NKGKV  237 (356)
Q Consensus       200 sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p--~~G~i  237 (356)
                      ++++.++..++|+|++|+|||||++.|.+...+  ..|+|
T Consensus         3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V   42 (665)
T 2dy1_A            3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV   42 (665)
T ss_dssp             ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG
T ss_pred             CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee
Confidence            456788999999999999999999999987665  56666

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.61  E-value=0.00075  Score=56.27  Aligned_cols=25  Identities=24%  Similarity=0.284  Sum_probs=21.8

Q ss_pred             cCCeeeeecCCCCchhhHHHHHhCC
Q psy2684         248 MESRVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       248 ~~~~ialvG~nG~GKsTll~~l~g~  272 (356)
                      .++.++++|+|||||||+++.+++.
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~~   31 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAHQ   31 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence            3567899999999999999999864

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.58  E-value=0.00084  Score=62.20  Aligned_cols=39  Identities=21%  Similarity=0.268  Sum_probs=29.2

Q ss_pred             eeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCc
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHS  295 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~  295 (356)
                      .+|++|+|||||||++++|.+.+.....      ...++++.++.
T Consensus        94 iigI~GpsGSGKSTl~~~L~~ll~~~~~------~~~v~~i~~D~  132 (321)
T 3tqc_A           94 IIGIAGSVAVGKSTTSRVLKALLSRWPD------HPNVEVITTDG  132 (321)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTSTT------CCCEEEEEGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcccCC------CCeEEEEeecc
Confidence            5899999999999999999987653211      12467777764

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.57  E-value=0.00044  Score=60.95  Aligned_cols=35  Identities=23%  Similarity=0.307  Sum_probs=27.6

Q ss_pred             cCCCeEEEEcCCCCCcchhhhhhcc---ccccCCCcee
Q psy2684         204 DMESRVALVGPNGIGKSTFLNLLKG---ELTPNKGKVL  238 (356)
Q Consensus       204 ~~ge~~~i~G~nGsGKSTll~~l~g---l~~p~~G~i~  238 (356)
                      .+|.+++|+|++||||||+.+.|++   ...++.|.+.
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~   51 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMY   51 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCee
Confidence            5688999999999999999999986   3334555543

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=96.56  E-value=0.0012  Score=62.91  Aligned_cols=26  Identities=27%  Similarity=0.450  Sum_probs=23.6

Q ss_pred             cCcCCeeeeecCCCCchhhHHHHHhC
Q psy2684         246 LDMESRVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       246 ~~~~~~ialvG~nG~GKsTll~~l~g  271 (356)
                      +..+..++++|+||+|||||+++|+|
T Consensus        17 v~~g~~vgiVG~pnaGKSTL~n~Ltg   42 (392)
T 1ni3_A           17 PGNNLKTGIVGMPNVGKSTFFRAITK   42 (392)
T ss_dssp             SSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHC
Confidence            34577899999999999999999999

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.55  E-value=0.00034  Score=61.83  Aligned_cols=32  Identities=34%  Similarity=0.439  Sum_probs=26.1

Q ss_pred             CCeEEEEcCCCCCcchhhhhhc---cccccCCCce
Q psy2684         206 ESRVALVGPNGIGKSTFLNLLK---GELTPNKGKV  237 (356)
Q Consensus       206 ge~~~i~G~nGsGKSTll~~l~---gl~~p~~G~i  237 (356)
                      .-+++|.||+||||||+.+.|+   |+...+.|.+
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~   43 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAM   43 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH
Confidence            3479999999999999999998   5555556655

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=96.52  E-value=0.00092  Score=56.92  Aligned_cols=23  Identities=35%  Similarity=0.670  Sum_probs=21.3

Q ss_pred             eeeeecCCCCchhhHHHHHhCCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      +++++|+||+|||||++.++|..
T Consensus         7 kv~lvG~~g~GKSTLl~~l~~~~   29 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLLSRFTRNE   29 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            68999999999999999999874

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.51  E-value=0.00063  Score=57.22  Aligned_cols=25  Identities=36%  Similarity=0.545  Sum_probs=21.9

Q ss_pred             cCCCeEEEEcCCCCCcchhhhhhcc
Q psy2684         204 DMESRVALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       204 ~~ge~~~i~G~nGsGKSTll~~l~g  228 (356)
                      .+|.+++|+|++||||||+.+.|+.
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3577899999999999999999984

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=96.50  E-value=0.0063  Score=56.98  Aligned_cols=71  Identities=11%  Similarity=0.097  Sum_probs=49.4

Q ss_pred             HHHHHHHHHccC--CCEEEEeCCCCCC----------CH----HH---H---HHHHHHHHhcCcEEEEEecChh------
Q psy2684          15 IRVSLARALFLE--PTLLLLDEPTNHL----------DL----NA---V---IWLDNYLQTWKKTLLVVSHDQS------   66 (356)
Q Consensus        15 ~r~~la~~l~~~--p~~llLDEPt~~L----------D~----~~---~---~~l~~~l~~~~~tvi~vsHd~~------   66 (356)
                      +.+.++++++.+  |+++|+|||++.+          |+    ..   .   ..|..++++++.|||+++|-..      
T Consensus       126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~  205 (349)
T 2zr9_A          126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF  205 (349)
T ss_dssp             HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred             HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence            345667777654  9999999999998          32    11   1   2234445778999999999754      


Q ss_pred             ----------HHhhhcCEEEEEeCCeEeE
Q psy2684          67 ----------FLNNICTDIIHLDMKKLFY   85 (356)
Q Consensus        67 ----------~l~~~~~~i~~l~~g~~~~   85 (356)
                                .+..+||.++.++.+....
T Consensus       206 ~~p~~~~gg~~l~~~ad~~l~lrr~~~~k  234 (349)
T 2zr9_A          206 GSPETTTGGKALKFYASVRLDVRRIETLK  234 (349)
T ss_dssp             ----CCSSHHHHHHHCSEEEEEEEEEEEC
T ss_pred             CCCcccCCchHhhhccceEEEEEEeeeee
Confidence                      2567899999998776554

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=96.44  E-value=0.0068  Score=58.82  Aligned_cols=74  Identities=11%  Similarity=-0.012  Sum_probs=53.2

Q ss_pred             CcCCHHHHHHHHHHHHHc--cCCCEEEEeCCCCCCCH--------HHH----HHHHHHHHhcCcEEEEEec---------
Q psy2684           7 KEFSGGWRIRVSLARALF--LEPTLLLLDEPTNHLDL--------NAV----IWLDNYLQTWKKTLLVVSH---------   63 (356)
Q Consensus         7 ~~LSgGe~~r~~la~~l~--~~p~~llLDEPt~~LD~--------~~~----~~l~~~l~~~~~tvi~vsH---------   63 (356)
                      ..+|.++.+.  .++.+.  .+|+++|+|+++...+.        ..+    ..|..+.++++.+||+++|         
T Consensus       294 ~~~s~~~i~~--~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~  371 (454)
T 2r6a_A          294 PSIRVSDIRA--KCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQ  371 (454)
T ss_dssp             TTCCHHHHHH--HHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC-
T ss_pred             CCCCHHHHHH--HHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCC
Confidence            4689988774  445554  68999999999998843        122    2355555677899999999         


Q ss_pred             C--hh--------HHhhhcCEEEEEeCCe
Q psy2684          64 D--QS--------FLNNICTDIIHLDMKK   82 (356)
Q Consensus        64 d--~~--------~l~~~~~~i~~l~~g~   82 (356)
                      |  ..        .+...||.|+.|+++.
T Consensus       372 ~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~  400 (454)
T 2r6a_A          372 DKRPMMSDIRESGSIEQDADIVAFLYRDD  400 (454)
T ss_dssp             --CCCTHHHHTTCSHHHHCSEEEEEEETT
T ss_pred             CCCCcHHHhhccchhHhhCCEEEEEeccc
Confidence            2  22        4677899999997654

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.44  E-value=0.0004  Score=62.07  Aligned_cols=36  Identities=28%  Similarity=0.330  Sum_probs=30.3

Q ss_pred             eEeeeccccCc---CCeeeeecCCCCchhhHHHHHhCCC
Q psy2684         238 LLEKVNFGLDM---ESRVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       238 ~~~g~~~~~~~---~~~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      .+++.++.+..   ++.++++|++||||||+.+.|++.+
T Consensus        34 ~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           34 ILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             HHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            45667777777   8999999999999999999998743

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=96.43  E-value=0.00096  Score=62.62  Aligned_cols=39  Identities=21%  Similarity=0.262  Sum_probs=31.9

Q ss_pred             eecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEe
Q psy2684         202 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE  240 (356)
Q Consensus       202 ~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~  240 (356)
                      -+++|+++.|.||+|||||||+..++.......|.+.|-
T Consensus        57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi   95 (349)
T 2zr9_A           57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFI   95 (349)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence            478999999999999999999888887665556666553

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=96.43  E-value=0.0013  Score=62.56  Aligned_cols=37  Identities=19%  Similarity=0.187  Sum_probs=32.3

Q ss_pred             CCCeEEEEcCCCCCcchhhhhhccccccCCCceeEee
Q psy2684         205 MESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK  241 (356)
Q Consensus       205 ~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g  241 (356)
                      .+..+.|+|++||||||+++.+.....+..+.|.+-+
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D   70 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID   70 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence            5677899999999999999999998888888887744

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.41  E-value=0.00095  Score=64.37  Aligned_cols=39  Identities=28%  Similarity=0.194  Sum_probs=34.9

Q ss_pred             CCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeec
Q psy2684         205 MESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN  243 (356)
Q Consensus       205 ~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~  243 (356)
                      ++.+++++|++|+||||++..|+..+.+..++|.+-+.+
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D  134 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD  134 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence            467899999999999999999999999998899886654

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=96.39  E-value=0.00082  Score=65.35  Aligned_cols=50  Identities=14%  Similarity=0.280  Sum_probs=41.7

Q ss_pred             CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCC-ceeEee
Q psy2684         192 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG-KVLLEK  241 (356)
Q Consensus       192 ~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G-~i~~~g  241 (356)
                      +-..|+++..-+.+|+.+.|.|++|+|||||+..+++...+..| .|.+.+
T Consensus       189 G~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s  239 (454)
T 2r6a_A          189 GFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS  239 (454)
T ss_dssp             SCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred             CcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            33578888888999999999999999999999999998877555 566654

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.37  E-value=0.0004  Score=64.35  Aligned_cols=54  Identities=17%  Similarity=0.123  Sum_probs=40.3

Q ss_pred             cCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhc
Q psy2684           8 EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNIC   72 (356)
Q Consensus         8 ~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~   72 (356)
                      +||+||+||+..+.+++.+||++  |||         ..+.+.++..  +.+|+++||+.-.++.+.
T Consensus       141 ~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~~~~~l~  196 (318)
T 1nij_A          141 QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGDIDLGLLF  196 (318)
T ss_dssp             HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCCCGGGGS
T ss_pred             hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCCCHHHHh
Confidence            68999999998888888999987  998         3444444433  579999999755444443

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=96.34  E-value=0.0014  Score=57.65  Aligned_cols=28  Identities=39%  Similarity=0.536  Sum_probs=24.1

Q ss_pred             eEEEEcCCCCCcchhhhhhccccccCCC
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGELTPNKG  235 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~~p~~G  235 (356)
                      .++|+|++|+|||||++.|.|...+.++
T Consensus        31 ~i~lvG~~g~GKStlin~l~g~~~~~~~   58 (239)
T 3lxx_A           31 RIVLVGKTGAGKSATGNSILGRKVFHSG   58 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence            4799999999999999999998776555

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.33  E-value=0.0016  Score=55.79  Aligned_cols=21  Identities=43%  Similarity=0.574  Sum_probs=19.7

Q ss_pred             eeeeecCCCCchhhHHHHHhC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g  271 (356)
                      .++++|+|||||||+.+.+++
T Consensus         4 ~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            579999999999999999987

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=96.31  E-value=0.0006  Score=65.52  Aligned_cols=64  Identities=23%  Similarity=0.157  Sum_probs=46.9

Q ss_pred             CCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH---HHHHHHHhcCcEEEEEe-cChhHHhhh
Q psy2684           4 KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVI---WLDNYLQTWKKTLLVVS-HDQSFLNNI   71 (356)
Q Consensus         4 ~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~---~l~~~l~~~~~tvi~vs-Hd~~~l~~~   71 (356)
                      .++.+||+|++|++.+|++|+..|.+|+|    |.+|+....   .+.+.++..+.++|+|| |..+-+.++
T Consensus       248 ~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL  315 (416)
T 1udx_A          248 EPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPAL  315 (416)
T ss_dssp             CHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHH
T ss_pred             CCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHHHHHHHHHhcCCeEEEEECCCccCHHHH
Confidence            45678999999999999999999999999    999986443   33444444566777776 444434333

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.28  E-value=0.0013  Score=54.32  Aligned_cols=23  Identities=39%  Similarity=0.368  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      +++|+|++||||||+.+.|+..+
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999998654

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.26  E-value=0.0016  Score=56.59  Aligned_cols=31  Identities=26%  Similarity=0.532  Sum_probs=24.4

Q ss_pred             CeeeeecCCCCchhhHHHHHhCCC---CCCccee
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKGEL---TPNKGEL  280 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g~~---~~~~g~~  280 (356)
                      ..++++|++||||||+++.+++.+   .++.|.+
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i   39 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI   39 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCCcccCcce
Confidence            478999999999999999998754   3444443

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.26  E-value=0.0014  Score=56.11  Aligned_cols=21  Identities=38%  Similarity=0.659  Sum_probs=19.7

Q ss_pred             eeeeecCCCCchhhHHHHHhC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g  271 (356)
                      .++++|+|||||||+.+.|++
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            589999999999999999987

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.25  E-value=0.001  Score=63.11  Aligned_cols=34  Identities=18%  Similarity=0.191  Sum_probs=28.2

Q ss_pred             eeeccccCcCCeeeeecCCCCchhhHHHHHhCCC
Q psy2684         240 EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       240 ~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      ++.++.+..++.++++||||+||||+++++++..
T Consensus       160 ~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          160 KCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             HHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3445567778899999999999999999999853

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.23  E-value=0.0017  Score=54.14  Aligned_cols=26  Identities=27%  Similarity=0.363  Sum_probs=22.8

Q ss_pred             CCeEEEEcCCCCCcchhhhhhccccc
Q psy2684         206 ESRVALVGPNGIGKSTFLNLLKGELT  231 (356)
Q Consensus       206 ge~~~i~G~nGsGKSTll~~l~gl~~  231 (356)
                      +.++.|+|++||||||+.+.|+..+.
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~   28 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            56799999999999999999987653

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.23  E-value=0.0019  Score=52.86  Aligned_cols=20  Identities=35%  Similarity=0.605  Sum_probs=17.9

Q ss_pred             eeeeecCCCCchhhHHHHHh
Q psy2684         251 RVALVGPNGIGKSTFLNLLK  270 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~  270 (356)
                      ..+++||||+||||++.+|.
T Consensus        25 ~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           25 INLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            56889999999999999885

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.20  E-value=0.0012  Score=58.72  Aligned_cols=33  Identities=30%  Similarity=0.509  Sum_probs=23.6

Q ss_pred             ccceeeecCCCeEEEEcCCCCCcchhhhhhccccc
Q psy2684         197 EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT  231 (356)
Q Consensus       197 ~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~  231 (356)
                      ..+++.+..|  +.|.||+|+||||+++++++...
T Consensus        38 ~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~   70 (257)
T 1lv7_A           38 QKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK   70 (257)
T ss_dssp             -----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             HHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence            3344444444  88999999999999999998764

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=96.19  E-value=0.0015  Score=61.70  Aligned_cols=30  Identities=27%  Similarity=0.451  Sum_probs=24.6

Q ss_pred             ccceeeecCCCeEEEEcCCCCCcchhhhhhc
Q psy2684         197 EKVNFGLDMESRVALVGPNGIGKSTFLNLLK  227 (356)
Q Consensus       197 ~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~  227 (356)
                      ++..+++.+ .+.+|+|+|||||||++.+|.
T Consensus        17 ~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           17 VNSRIKFEK-GIVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             EEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred             cceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence            455666655 489999999999999999876

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.19  E-value=0.00048  Score=62.27  Aligned_cols=23  Identities=43%  Similarity=0.778  Sum_probs=21.2

Q ss_pred             eeeecCCCCchhhHHHHHhCCCC
Q psy2684         252 VALVGPNGIGKSTFLNLLKGELT  274 (356)
Q Consensus       252 ialvG~nG~GKsTll~~l~g~~~  274 (356)
                      +.++||||+||||+++++++...
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~~   98 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEAR   98 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEECCCcChHHHHHHHHHHHcC
Confidence            88999999999999999998764

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=96.18  E-value=0.00084  Score=66.82  Aligned_cols=32  Identities=31%  Similarity=0.357  Sum_probs=28.2

Q ss_pred             CcCCeeeeecCCCCchhhHHHHHhCCCCCCcc
Q psy2684         247 DMESRVALVGPNGIGKSTFLNLLKGELTPNKG  278 (356)
Q Consensus       247 ~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g  278 (356)
                      ..++.++++|+|||||||++++|++.+.+..|
T Consensus       367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G  398 (552)
T 3cr8_A          367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGG  398 (552)
T ss_dssp             GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCS
T ss_pred             ccceEEEEECCCCChHHHHHHHHHHhhcccCC
Confidence            45778999999999999999999999877664

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.11  E-value=0.00056  Score=60.80  Aligned_cols=23  Identities=43%  Similarity=0.778  Sum_probs=21.1

Q ss_pred             eeeecCCCCchhhHHHHHhCCCC
Q psy2684         252 VALVGPNGIGKSTFLNLLKGELT  274 (356)
Q Consensus       252 ialvG~nG~GKsTll~~l~g~~~  274 (356)
                      +.++||||+||||+++++++...
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~~~   74 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGEAR   74 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            88899999999999999998764

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=96.11  E-value=0.0026  Score=53.40  Aligned_cols=20  Identities=45%  Similarity=0.483  Sum_probs=18.0

Q ss_pred             CCCCCCChHHHHHHHHHHHc
Q psy2684         336 IPIRDLSGGQKARVALAELT  355 (356)
Q Consensus       336 ~~~~~LSGGqkqRvalA~~~  355 (356)
                      +++..||||||||++||+++
T Consensus        60 ~~~~~LSgGekqr~ala~~l   79 (173)
T 3kta_B           60 KRIEAMSGGEKALTALAFVF   79 (173)
T ss_dssp             CCGGGCCHHHHHHHHHHHHH
T ss_pred             cccccCCHHHHHHHHHHHHH
Confidence            46789999999999999986

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.09  E-value=0.0021  Score=54.66  Aligned_cols=31  Identities=32%  Similarity=0.388  Sum_probs=25.4

Q ss_pred             CeEEEEcCCCCCcchhhhhhccccccCCCceeEeee
Q psy2684         207 SRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKV  242 (356)
Q Consensus       207 e~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~  242 (356)
                      .+++|+|++||||||+.+.|+..     |..+++..
T Consensus         9 ~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d   39 (203)
T 1uf9_A            9 IIIGITGNIGSGKSTVAALLRSW-----GYPVLDLD   39 (203)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHC-----CCEEEccc
Confidence            46899999999999999999985     55566543

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.09  E-value=0.00043  Score=63.30  Aligned_cols=33  Identities=21%  Similarity=0.472  Sum_probs=28.6

Q ss_pred             CeEEEEcCCCCCcchhhhhhccccccCCCceeE
Q psy2684         207 SRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL  239 (356)
Q Consensus       207 e~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~  239 (356)
                      ..+.|.||+|+||||+++++++...+..+.+..
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~   80 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIR   80 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEE
Confidence            578999999999999999999998887776543

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.06  E-value=0.0018  Score=54.13  Aligned_cols=26  Identities=27%  Similarity=0.433  Sum_probs=22.6

Q ss_pred             cCCCeEEEEcCCCCCcchhhhhhccc
Q psy2684         204 DMESRVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       204 ~~ge~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      ..+.++.|+|++||||||+.+.|+..
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~~   34 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELASK   34 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence            45678999999999999999999843

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.04  E-value=0.0021  Score=52.90  Aligned_cols=19  Identities=42%  Similarity=0.655  Sum_probs=18.1

Q ss_pred             eEEEEcCCCCCcchhhhhh
Q psy2684         208 RVALVGPNGIGKSTFLNLL  226 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l  226 (356)
                      +++|+|++||||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6899999999999999999

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=96.04  E-value=0.0015  Score=60.51  Aligned_cols=40  Identities=25%  Similarity=0.305  Sum_probs=31.7

Q ss_pred             eeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCccee
Q psy2684         241 KVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL  280 (356)
Q Consensus       241 g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~  280 (356)
                      +.++....++.++++|+||+||||++..|++.+.+..+.+
T Consensus        97 ~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kV  136 (320)
T 1zu4_A           97 RIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKV  136 (320)
T ss_dssp             CCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             CccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence            3445556678899999999999999999998876655543

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=96.02  E-value=0.0027  Score=59.80  Aligned_cols=36  Identities=33%  Similarity=0.553  Sum_probs=29.2

Q ss_pred             CCeEEEEcCCCCCcchhhhhhcc-----------ccccCCCceeEee
Q psy2684         206 ESRVALVGPNGIGKSTFLNLLKG-----------ELTPNKGKVLLEK  241 (356)
Q Consensus       206 ge~~~i~G~nGsGKSTll~~l~g-----------l~~p~~G~i~~~g  241 (356)
                      |-.++|+|.+|+|||||++.|++           .+.|..|.+.+.+
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~   48 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD   48 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence            45789999999999999999998           4456667766654

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.01  E-value=0.0023  Score=53.70  Aligned_cols=25  Identities=28%  Similarity=0.412  Sum_probs=22.2

Q ss_pred             CCeEEEEcCCCCCcchhhhhhcccc
Q psy2684         206 ESRVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       206 ge~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      |-++.|.|++||||||+.+.|+..+
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l   27 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNL   27 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            5689999999999999999998754

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=95.99  E-value=0.002  Score=54.28  Aligned_cols=27  Identities=22%  Similarity=0.325  Sum_probs=23.2

Q ss_pred             cCCCeEEEEcCCCCCcchhhhhhcccc
Q psy2684         204 DMESRVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       204 ~~ge~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      ..+.++.|+|++||||||+.+.|+..+
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence            456789999999999999999998644

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=95.97  E-value=0.00065  Score=58.47  Aligned_cols=26  Identities=31%  Similarity=0.567  Sum_probs=22.9

Q ss_pred             eEEEEcCCCCCcchhhhhhccccccC
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGELTPN  233 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~~p~  233 (356)
                      +++|.|++||||||+++.|...+.+.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~~   27 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRAA   27 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence            58999999999999999998877643

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=95.93  E-value=0.0023  Score=55.31  Aligned_cols=23  Identities=43%  Similarity=0.444  Sum_probs=21.0

Q ss_pred             CCeEEEEcCCCCCcchhhhhhcc
Q psy2684         206 ESRVALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       206 ge~~~i~G~nGsGKSTll~~l~g  228 (356)
                      +-+++|+|++||||||+.+.|+.
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999987

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=95.93  E-value=0.0024  Score=54.34  Aligned_cols=20  Identities=45%  Similarity=0.775  Sum_probs=17.9

Q ss_pred             EEEEcCCCCCcchhhhhhcc
Q psy2684         209 VALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       209 ~~i~G~nGsGKSTll~~l~g  228 (356)
                      +.|+||||||||||++.|..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~   23 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            68999999999999998764

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=95.92  E-value=0.0035  Score=51.51  Aligned_cols=24  Identities=46%  Similarity=0.706  Sum_probs=21.5

Q ss_pred             CeeeeecCCCCchhhHHHHHhCCC
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      .+++++|++|+|||||++.+.+..
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~~   27 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGEN   27 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            368999999999999999999854

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=95.91  E-value=0.0025  Score=53.36  Aligned_cols=26  Identities=19%  Similarity=0.204  Sum_probs=23.1

Q ss_pred             eEEEEcCCCCCcchhhhhhccccccC
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGELTPN  233 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~~p~  233 (356)
                      +++|+|++|||||||+..|...+...
T Consensus         6 ~i~i~G~sGsGKTTl~~~L~~~l~~~   31 (169)
T 1xjc_A            6 VWQVVGYKHSGKTTLMEKWVAAAVRE   31 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhHhc
Confidence            68999999999999999999887654

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=95.88  E-value=0.0024  Score=53.20  Aligned_cols=23  Identities=35%  Similarity=0.546  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      ++.|+|++||||||+.+.|+..+
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            58999999999999999998754

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=95.87  E-value=0.0032  Score=53.60  Aligned_cols=26  Identities=15%  Similarity=0.148  Sum_probs=23.7

Q ss_pred             CCCeEEEEcCCCCCcchhhhhhcccc
Q psy2684         205 MESRVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       205 ~ge~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      +|-+++|.|+.||||||+.+.|+..+
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            57789999999999999999998765

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=95.86  E-value=0.0024  Score=57.00  Aligned_cols=23  Identities=22%  Similarity=0.265  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      +++|+||+|||||||.+.|+..+
T Consensus         3 li~I~G~~GSGKSTla~~La~~~   25 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQET   25 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHhcC
Confidence            58999999999999999998653

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=95.85  E-value=0.0027  Score=53.90  Aligned_cols=23  Identities=35%  Similarity=0.562  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      +++|+|++||||||+.+.|+..+
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l   24 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKL   24 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHhc
Confidence            58999999999999999999843

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=95.84  E-value=0.003  Score=58.74  Aligned_cols=24  Identities=42%  Similarity=0.821  Sum_probs=21.7

Q ss_pred             CeeeeecCCCCchhhHHHHHhCCC
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      +.++++||||+||||+++++++.+
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHh
Confidence            568889999999999999999876

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=95.84  E-value=0.003  Score=52.83  Aligned_cols=28  Identities=43%  Similarity=0.793  Sum_probs=23.9

Q ss_pred             eEEEEcCCCCCcchhhhhhccc----cccCCC
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGE----LTPNKG  235 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl----~~p~~G  235 (356)
                      .++|+|++|+|||||++.+.+-    +.|+.|
T Consensus        18 ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g   49 (181)
T 1fzq_A           18 RILLLGLDNAGKTTLLKQLASEDISHITPTQG   49 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCSCCEEEEEETT
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCcccCcCC
Confidence            5899999999999999999986    355666

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=95.83  E-value=0.0036  Score=51.96  Aligned_cols=25  Identities=36%  Similarity=0.550  Sum_probs=22.5

Q ss_pred             CCeeeeecCCCCchhhHHHHHhCCC
Q psy2684         249 ESRVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       249 ~~~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      +.+++++|++|+|||||++.+.+..
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4679999999999999999999864

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=95.76  E-value=0.0036  Score=52.49  Aligned_cols=25  Identities=24%  Similarity=0.283  Sum_probs=21.9

Q ss_pred             CCeEEEEcCCCCCcchhhhhhcccc
Q psy2684         206 ESRVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       206 ge~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      +..+.|+|++||||||+.+.|+..+
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            5678999999999999999997644

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=95.76  E-value=0.0029  Score=56.91  Aligned_cols=24  Identities=46%  Similarity=0.645  Sum_probs=21.7

Q ss_pred             eEEEEcCCCCCcchhhhhhccccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGELT  231 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~~  231 (356)
                      .++|+|++|||||||++.+.|...
T Consensus         5 ~i~lvG~~g~GKTTL~n~l~g~~~   28 (271)
T 3k53_A            5 TVALVGNPNVGKTTIFNALTGLRQ   28 (271)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            589999999999999999999753

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=95.72  E-value=0.0033  Score=52.17  Aligned_cols=21  Identities=29%  Similarity=0.374  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCcchhhhhhcc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~g  228 (356)
                      ++.|.|++||||||+.+.|+.
T Consensus         4 ~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            4 IILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEecCCCCCHHHHHHHHHh
Confidence            689999999999999999986

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=95.67  E-value=0.005  Score=51.35  Aligned_cols=23  Identities=48%  Similarity=0.780  Sum_probs=21.0

Q ss_pred             CeeeeecCCCCchhhHHHHHhCC
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g~  272 (356)
                      -+++++|++|+|||||++.+++.
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999984

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=95.64  E-value=0.004  Score=54.65  Aligned_cols=39  Identities=31%  Similarity=0.440  Sum_probs=25.9

Q ss_pred             eeEeeeccccC---cCCeeeeecCCCCchhhHHHHHhCCCCC
Q psy2684         237 VLLEKVNFGLD---MESRVALVGPNGIGKSTFLNLLKGELTP  275 (356)
Q Consensus       237 i~~~g~~~~~~---~~~~ialvG~nG~GKsTll~~l~g~~~~  275 (356)
                      +-+.+.++...   .+..+++.|++||||||+++.|...+..
T Consensus        11 ~~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~   52 (229)
T 4eaq_A           11 VDLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK   52 (229)
T ss_dssp             ---------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred             cCccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence            33455555443   6788999999999999999999887665

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=95.64  E-value=0.0031  Score=51.53  Aligned_cols=17  Identities=41%  Similarity=0.675  Sum_probs=15.3

Q ss_pred             CCCCCCChHHHHHHHHH
Q psy2684         336 IPIRDLSGGQKARVALA  352 (356)
Q Consensus       336 ~~~~~LSGGqkqRvalA  352 (356)
                      +++.+|||||||||+||
T Consensus        53 ~~~~~LSgGe~qrv~lA   69 (148)
T 1f2t_B           53 RPLTFLSGGERIALGLA   69 (148)
T ss_dssp             ECGGGSCHHHHHHHHHH
T ss_pred             CChhHCCHHHHHHHHHH
Confidence            47799999999999887

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=95.63  E-value=0.0037  Score=52.76  Aligned_cols=27  Identities=22%  Similarity=0.262  Sum_probs=23.4

Q ss_pred             cCCCeEEEEcCCCCCcchhhhhhcccc
Q psy2684         204 DMESRVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       204 ~~ge~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      .++-+++|+|+.||||||+.+.|+..+
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            467789999999999999999998543

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=95.61  E-value=0.0041  Score=56.60  Aligned_cols=35  Identities=17%  Similarity=0.297  Sum_probs=26.1

Q ss_pred             CCCeEEEEcCCCCCcchhhhhhccccccCCCceeEee
Q psy2684         205 MESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK  241 (356)
Q Consensus       205 ~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g  241 (356)
                      .+..+.|+||+||||||+.+.|+..+.  .+.+.++.
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~   66 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN   66 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence            355789999999999999999976442  24455554

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=95.61  E-value=0.0021  Score=54.48  Aligned_cols=30  Identities=23%  Similarity=0.212  Sum_probs=25.0

Q ss_pred             eeecCCCeEEEEcCCCCCcchhhhhhcccc
Q psy2684         201 FGLDMESRVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       201 l~i~~ge~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      ..+..+-+++|+|+.||||||+.+.|+..+
T Consensus         7 ~~~~~~~~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A            7 EDLRKCKIIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             HHHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            345567789999999999999999998654

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=95.58  E-value=0.0044  Score=53.03  Aligned_cols=26  Identities=27%  Similarity=0.202  Sum_probs=23.2

Q ss_pred             cCCCeEEEEcCCCCCcchhhhhhccc
Q psy2684         204 DMESRVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       204 ~~ge~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      ..|-+++|.|+.||||||+.+.|+..
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~   33 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEY   33 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            46788999999999999999999864

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=95.57  E-value=0.0057  Score=51.17  Aligned_cols=22  Identities=36%  Similarity=0.626  Sum_probs=20.6

Q ss_pred             eeeeecCCCCchhhHHHHHhCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~  272 (356)
                      +++++|++|+|||||++.+.+.
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999985

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=95.56  E-value=0.0046  Score=53.00  Aligned_cols=28  Identities=29%  Similarity=0.227  Sum_probs=23.8

Q ss_pred             ecCCCeEEEEcCCCCCcchhhhhhcccc
Q psy2684         203 LDMESRVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       203 i~~ge~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      ..+|-+++|.|+.||||||+.+.|+..+
T Consensus         6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l   33 (215)
T 1nn5_A            6 ARRGALIVLEGVDRAGKSTQSRKLVEAL   33 (215)
T ss_dssp             -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4567899999999999999999998643

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=95.53  E-value=0.0049  Score=51.47  Aligned_cols=26  Identities=35%  Similarity=0.339  Sum_probs=22.3

Q ss_pred             cCCeeeeecCCCCchhhHHHHHhCCC
Q psy2684         248 MESRVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       248 ~~~~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      .+..++++|++||||||+++.+++.+
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~~l   29 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEEYL   29 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            35678899999999999999998764

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=95.49  E-value=0.005  Score=51.69  Aligned_cols=28  Identities=29%  Similarity=0.456  Sum_probs=21.3

Q ss_pred             eEEEEcCCCCCcchhhhhhccc-----cccCCC
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGE-----LTPNKG  235 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl-----~~p~~G  235 (356)
                      .++|+|++|+|||||++.+.+-     +.|+.+
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~   54 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG   54 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence            4799999999999999755543     455544

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=95.49  E-value=0.0049  Score=51.39  Aligned_cols=25  Identities=24%  Similarity=0.389  Sum_probs=17.5

Q ss_pred             CCCeEEEEcCCCCCcchhhhhhccc
Q psy2684         205 MESRVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       205 ~ge~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      ++.++.|.|++||||||+.+.|+..
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~   28 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHER   28 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            4668999999999999999999754

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.47  E-value=0.0058  Score=52.57  Aligned_cols=20  Identities=35%  Similarity=0.605  Sum_probs=17.6

Q ss_pred             eeeeecCCCCchhhHHHHHh
Q psy2684         251 RVALVGPNGIGKSTFLNLLK  270 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~  270 (356)
                      ..+++|+||+||||++.+|.
T Consensus        25 ~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           25 INLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEcCCCCCHHHHHHHHH
Confidence            56888999999999998874

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=95.47  E-value=0.0032  Score=59.03  Aligned_cols=27  Identities=48%  Similarity=0.703  Sum_probs=22.6

Q ss_pred             CCeeeeecCCCCchhhHHHHHhCCCCC
Q psy2684         249 ESRVALVGPNGIGKSTFLNLLKGELTP  275 (356)
Q Consensus       249 ~~~ialvG~nG~GKsTll~~l~g~~~~  275 (356)
                      ...++++|++|+|||||++.+++...+
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~~~~~~  100 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFGKMLTE  100 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence            346899999999999999999985433

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.46  E-value=0.0038  Score=53.20  Aligned_cols=23  Identities=30%  Similarity=0.460  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      +++|.|++||||||+.+.|+..+
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            79999999999999999998854

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=95.42  E-value=0.007  Score=51.78  Aligned_cols=26  Identities=27%  Similarity=0.584  Sum_probs=22.5

Q ss_pred             cCCeeeeecCCCCchhhHHHHHhCCC
Q psy2684         248 MESRVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       248 ~~~~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      .+..+.++|++||||||+.+.|+..+
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            45678899999999999999998765

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=95.41  E-value=0.0048  Score=52.66  Aligned_cols=28  Identities=32%  Similarity=0.344  Sum_probs=23.9

Q ss_pred             CCCeEEEEcCCCCCcchhhhhhcccccc
Q psy2684         205 MESRVALVGPNGIGKSTFLNLLKGELTP  232 (356)
Q Consensus       205 ~ge~~~i~G~nGsGKSTll~~l~gl~~p  232 (356)
                      +|-+++|.|+.||||||+.+.|+..+..
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~   30 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIEL   30 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            3568999999999999999999886554

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.41  E-value=0.0041  Score=56.88  Aligned_cols=30  Identities=30%  Similarity=0.562  Sum_probs=26.5

Q ss_pred             eeecCCCeEEEEcCCCCCcchhhhhhcccc
Q psy2684         201 FGLDMESRVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       201 l~i~~ge~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      +.+.++..+.|.||+|+||||+++++++..
T Consensus        44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~   73 (301)
T 3cf0_A           44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC   73 (301)
T ss_dssp             HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred             cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence            346778889999999999999999999875

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=95.40  E-value=0.0034  Score=61.32  Aligned_cols=32  Identities=25%  Similarity=0.523  Sum_probs=0.0

Q ss_pred             ccccceeeecCCCeEEEEcCCCCCcchhhhhhcc
Q psy2684         195 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       195 ~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~g  228 (356)
                      .+.++++.+++|  +.|+||+|+|||||++++++
T Consensus        40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~   71 (476)
T 2ce7_A           40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAG   71 (476)
T ss_dssp             HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHH
T ss_pred             HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHH

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=95.38  E-value=0.01  Score=54.32  Aligned_cols=24  Identities=46%  Similarity=0.660  Sum_probs=21.7

Q ss_pred             CeeeeecCCCCchhhHHHHHhCCC
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      ..++++|++|+|||||++.+.|..
T Consensus         9 ~~VaIvG~~nvGKSTLln~L~g~~   32 (301)
T 1ega_A            9 GFIAIVGRPNVGKSTLLNKLLGQK   32 (301)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC
Confidence            368999999999999999999863

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=95.36  E-value=0.0049  Score=51.69  Aligned_cols=24  Identities=38%  Similarity=0.415  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCCcchhhhhhccccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGELT  231 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~~  231 (356)
                      ++.|.|++||||||+.+.|+..+.
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999987654

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=95.36  E-value=0.0056  Score=49.79  Aligned_cols=24  Identities=33%  Similarity=0.635  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCcchhhhhhccccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGELT  231 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~~  231 (356)
                      .++|+|+.|+|||||++.+.+...
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~~~   27 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGVED   27 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC--
T ss_pred             EEEEECCCCCCHHHHHHHHcCccc
Confidence            479999999999999999988543

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=95.34  E-value=0.0049  Score=51.70  Aligned_cols=24  Identities=29%  Similarity=0.636  Sum_probs=21.5

Q ss_pred             CeEEEEcCCCCCcchhhhhhcccc
Q psy2684         207 SRVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       207 e~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      -.++|+|+.|+|||||++.+.+..
T Consensus        49 ~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           49 PSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            368999999999999999998865

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=95.34  E-value=0.0073  Score=51.47  Aligned_cols=23  Identities=22%  Similarity=0.404  Sum_probs=20.4

Q ss_pred             CeeeeecCCCCchhhHHHHHhCC
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g~  272 (356)
                      ..++++|++||||||+.+.|++.
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999764

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=95.29  E-value=0.0054  Score=51.52  Aligned_cols=24  Identities=25%  Similarity=0.246  Sum_probs=20.7

Q ss_pred             CCeEEEEcCCCCCcchhhhhhccc
Q psy2684         206 ESRVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       206 ge~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      +-+++|+|+.||||||+.+.|+..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~   26 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEK   26 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999988753

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=95.28  E-value=0.0099  Score=52.10  Aligned_cols=28  Identities=36%  Similarity=0.433  Sum_probs=23.9

Q ss_pred             CeeeeecCCCCchhhHHHHHhCCCCCCc
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKGELTPNK  277 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g~~~~~~  277 (356)
                      -+++++|++|+|||||++.++|......
T Consensus        30 ~~i~lvG~~g~GKStlin~l~g~~~~~~   57 (239)
T 3lxx_A           30 LRIVLVGKTGAGKSATGNSILGRKVFHS   57 (239)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTSCCSCC
T ss_pred             eEEEEECCCCCCHHHHHHHHcCCCcCcc
Confidence            4789999999999999999999765443

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.26  E-value=0.0068  Score=55.25  Aligned_cols=25  Identities=20%  Similarity=0.377  Sum_probs=18.9

Q ss_pred             CCeEEEEcCCCCCcchhhhhhcccc
Q psy2684         206 ESRVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       206 ge~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      .-+++|.|++||||||+.+.|...+
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~~l   29 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQIF   29 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHH
Confidence            4579999999999999999988754

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=95.25  E-value=0.0061  Score=55.00  Aligned_cols=23  Identities=35%  Similarity=0.694  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      .++|+|++|+|||||++.++|..
T Consensus         5 kI~lvG~~nvGKSTL~n~L~g~~   27 (272)
T 3b1v_A            5 EIALIGNPNSGKTSLFNLITGHN   27 (272)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999964

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=95.24  E-value=0.018  Score=58.02  Aligned_cols=32  Identities=25%  Similarity=0.362  Sum_probs=27.4

Q ss_pred             cCcCCeeeeecCCCCchhhHHHHHhCCCCCCc
Q psy2684         246 LDMESRVALVGPNGIGKSTFLNLLKGELTPNK  277 (356)
Q Consensus       246 ~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~  277 (356)
                      +..++.+.++||||+||||++++|++.+.+..
T Consensus        57 i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~   88 (604)
T 3k1j_A           57 ANQKRHVLLIGEPGTGKSMLGQAMAELLPTET   88 (604)
T ss_dssp             HHTTCCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred             ccCCCEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence            44556788999999999999999999987765

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=95.18  E-value=0.0061  Score=49.54  Aligned_cols=23  Identities=22%  Similarity=0.491  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~~   29 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKGI   29 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            47999999999999999988643

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=95.16  E-value=0.0071  Score=49.57  Aligned_cols=23  Identities=39%  Similarity=0.797  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~~~   28 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAGKQ   28 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCccHHHHHHHHhcCC
Confidence            47999999999999999998764

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.16  E-value=0.0063  Score=50.42  Aligned_cols=22  Identities=36%  Similarity=0.570  Sum_probs=19.9

Q ss_pred             CeEEEEcCCCCCcchhhhhhcc
Q psy2684         207 SRVALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       207 e~~~i~G~nGsGKSTll~~l~g  228 (356)
                      -.++|+|++|+|||||++.+.+
T Consensus        19 ~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           19 LRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             EEEEEEEETTSSHHHHHHHTCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            3689999999999999999985

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=95.16  E-value=0.0075  Score=49.64  Aligned_cols=23  Identities=26%  Similarity=0.599  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~~~   33 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFADNT   33 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47999999999999999998754

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=95.14  E-value=0.0053  Score=53.83  Aligned_cols=26  Identities=27%  Similarity=0.331  Sum_probs=21.7

Q ss_pred             ecCCCeEEEEcCCCCCcchhhhhhcc
Q psy2684         203 LDMESRVALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       203 i~~ge~~~i~G~nGsGKSTll~~l~g  228 (356)
                      +..|+.+.++||+||||||++..+..
T Consensus        73 i~~g~~~~i~g~TGsGKTt~~~~~~~   98 (235)
T 3llm_A           73 ISQNSVVIIRGATGCGKTTQVPQFIL   98 (235)
T ss_dssp             HHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred             HhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence            45688999999999999998876643

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=95.13  E-value=0.0069  Score=52.11  Aligned_cols=23  Identities=26%  Similarity=0.401  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      +++|+|+.||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999996543

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.13  E-value=0.0073  Score=49.19  Aligned_cols=22  Identities=36%  Similarity=0.605  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCcchhhhhhccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      .++|+|+.|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999999874

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=95.13  E-value=0.012  Score=49.53  Aligned_cols=29  Identities=17%  Similarity=0.400  Sum_probs=23.3

Q ss_pred             cccCcCCeeeeecCCCCchhhHHHHHhCC
Q psy2684         244 FGLDMESRVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       244 ~~~~~~~~ialvG~nG~GKsTll~~l~g~  272 (356)
                      +....+..+.++|+.||||||+.+.++..
T Consensus         5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            5 MEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             -CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            34445678999999999999999998754

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=95.11  E-value=0.0076  Score=49.13  Aligned_cols=23  Identities=43%  Similarity=0.681  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      .++|+|+.|+|||||++.+.+..
T Consensus         4 ki~ivG~~~~GKSsli~~l~~~~   26 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGGLQ   26 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHHhcc
Confidence            47899999999999999997644

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=95.07  E-value=0.0068  Score=48.92  Aligned_cols=23  Identities=35%  Similarity=0.574  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47999999999999999998754

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=95.07  E-value=0.009  Score=55.75  Aligned_cols=28  Identities=18%  Similarity=0.200  Sum_probs=25.7

Q ss_pred             eecCCCeEEEEcCCCCCcchhhhhhccc
Q psy2684         202 GLDMESRVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       202 ~i~~ge~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      -+++|+++.|.||+|+|||||+..++..
T Consensus       118 Gl~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          118 GIESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999999988875

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=95.07  E-value=0.0063  Score=49.09  Aligned_cols=23  Identities=30%  Similarity=0.517  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      .++++|+.|+|||||++.+.+-.
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~~   27 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQNH   27 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            47999999999999999997653

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=95.03  E-value=0.0072  Score=49.88  Aligned_cols=24  Identities=29%  Similarity=0.390  Sum_probs=20.8

Q ss_pred             CeEEEEcCCCCCcchhhhhhcccc
Q psy2684         207 SRVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       207 e~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      .++.|+|+.||||||+.+.|+..+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l   26 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARAL   26 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            368999999999999999998643

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=95.01  E-value=0.0074  Score=50.61  Aligned_cols=24  Identities=38%  Similarity=0.641  Sum_probs=20.8

Q ss_pred             CeEEEEcCCCCCcchhhhhhcccc
Q psy2684         207 SRVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       207 e~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      -.++|+|+.|+|||||++.+.+-.
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 1svi_A           24 PEIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            358999999999999999998753

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=95.01  E-value=0.0073  Score=48.86  Aligned_cols=22  Identities=27%  Similarity=0.528  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCCcchhhhhhccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      .++|+|+.|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999988754

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=94.99  E-value=0.0081  Score=52.27  Aligned_cols=26  Identities=23%  Similarity=0.319  Sum_probs=21.3

Q ss_pred             cCCCeEEEEcCCCCCcchhhhhhccc
Q psy2684         204 DMESRVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       204 ~~ge~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      .++-++.|+|+.||||||+.+.|+..
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~   30 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTH   30 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence            34568999999999999999999743

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=94.99  E-value=0.0084  Score=56.20  Aligned_cols=21  Identities=38%  Similarity=0.594  Sum_probs=0.0

Q ss_pred             eEEEEcCCCCCcchhhhhhcc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~g  228 (356)
                      .++|+|++|+|||||++.++|
T Consensus       169 ~v~lvG~~gvGKSTLin~L~~  189 (357)
T 2e87_A          169 TVVIAGHPNVGKSTLLKALTT  189 (357)
T ss_dssp             EEEEECSTTSSHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHhC

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=94.98  E-value=0.0075  Score=48.82  Aligned_cols=23  Identities=30%  Similarity=0.491  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~~   28 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYDE   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            47999999999999999997643

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=94.97  E-value=0.0094  Score=51.55  Aligned_cols=26  Identities=35%  Similarity=0.528  Sum_probs=22.5

Q ss_pred             CCCeEEEEcCCCCCcchhhhhhcccc
Q psy2684         205 MESRVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       205 ~ge~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      +|-++.|+|+.||||||+.+.|+..+
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            45679999999999999999997654

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=94.97  E-value=0.0077  Score=50.30  Aligned_cols=23  Identities=43%  Similarity=0.626  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCc
Confidence            58999999999999999998764

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=94.96  E-value=0.0076  Score=49.04  Aligned_cols=23  Identities=30%  Similarity=0.582  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            47999999999999999998765

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=94.96  E-value=0.0083  Score=51.64  Aligned_cols=22  Identities=27%  Similarity=0.348  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCcchhhhhhccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      +++|+|+.||||||+.+.|+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999653

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=94.96  E-value=0.0084  Score=50.16  Aligned_cols=23  Identities=39%  Similarity=0.445  Sum_probs=20.4

Q ss_pred             CeEEEEcCCCCCcchhhhhhccc
Q psy2684         207 SRVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       207 e~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      -+++|+|+.||||||+.+.|+..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~   25 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKA   25 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999998764

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=94.95  E-value=0.0084  Score=51.14  Aligned_cols=23  Identities=35%  Similarity=0.534  Sum_probs=20.7

Q ss_pred             CeEEEEcCCCCCcchhhhhhccc
Q psy2684         207 SRVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       207 e~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      -+++|+|+.||||||+.+.|+..
T Consensus        13 ~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           13 MVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999999865

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=94.95  E-value=0.0084  Score=50.34  Aligned_cols=23  Identities=35%  Similarity=0.371  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      +++|.|+.||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58999999999999999998755

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=94.94  E-value=0.016  Score=55.15  Aligned_cols=26  Identities=35%  Similarity=0.652  Sum_probs=22.8

Q ss_pred             CcCCeeeeecCCCCchhhHHHHHhCC
Q psy2684         247 DMESRVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       247 ~~~~~ialvG~nG~GKsTll~~l~g~  272 (356)
                      ..+.+++++|+||+|||||++.+.+.
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~   45 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNS   45 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            45678999999999999999999987

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=94.94  E-value=0.0086  Score=49.18  Aligned_cols=23  Identities=43%  Similarity=0.463  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      +++|.|+.||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l   24 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSL   24 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999998743

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=94.93  E-value=0.0077  Score=49.07  Aligned_cols=22  Identities=23%  Similarity=0.430  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCcchhhhhhccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      .++|+|+.|+|||||++.+.+-
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4799999999999999998865

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=94.92  E-value=0.011  Score=48.69  Aligned_cols=26  Identities=23%  Similarity=0.371  Sum_probs=22.0

Q ss_pred             CCCeEEEEcCCCCCcchhhhhhcccc
Q psy2684         205 MESRVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       205 ~ge~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      +.-.++|+|+.|+|||||++.+.+-.
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~~   32 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHSK   32 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            34568999999999999999998743

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=94.92  E-value=0.012  Score=54.48  Aligned_cols=28  Identities=21%  Similarity=0.414  Sum_probs=25.4

Q ss_pred             eecCCCeEEEEcCCCCCcchhhhhhccc
Q psy2684         202 GLDMESRVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       202 ~i~~ge~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      -+++|+++.|.||+|+|||||+..++..
T Consensus       103 Gl~~G~i~~i~G~~GsGKT~la~~la~~  130 (324)
T 2z43_A          103 GIETRTMTEFFGEFGSGKTQLCHQLSVN  130 (324)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence            5789999999999999999999988764

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=94.92  E-value=0.0079  Score=49.55  Aligned_cols=23  Identities=22%  Similarity=0.613  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        10 ~i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            47999999999999999887654

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=94.91  E-value=0.0074  Score=49.11  Aligned_cols=23  Identities=30%  Similarity=0.600  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVEDK   27 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            47999999999999999998653

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=94.91  E-value=0.011  Score=49.52  Aligned_cols=23  Identities=35%  Similarity=0.501  Sum_probs=19.9

Q ss_pred             CCeeeeecCCCCchhhHHHHHhC
Q psy2684         249 ESRVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       249 ~~~ialvG~nG~GKsTll~~l~g  271 (356)
                      +..++++|++||||||+.+.++.
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            44688999999999999999874

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.90  E-value=0.0082  Score=48.78  Aligned_cols=23  Identities=22%  Similarity=0.414  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47999999999999999887654

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=94.88  E-value=0.0083  Score=48.65  Aligned_cols=22  Identities=23%  Similarity=0.505  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCcchhhhhhccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      .++|+|+.|+|||||++.+.+-
T Consensus         5 ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999999764

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=94.87  E-value=0.0085  Score=49.85  Aligned_cols=23  Identities=30%  Similarity=0.577  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGKK   25 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCcC
Confidence            47899999999999999998864

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=94.87  E-value=0.01  Score=50.27  Aligned_cols=23  Identities=43%  Similarity=0.681  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      .++|+|++|+|||||++.+.+..
T Consensus        25 ki~vvG~~~vGKSsLi~~l~~~~   47 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLAGTFGGLQ   47 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHTCCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHhcc
Confidence            47999999999999999997653

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=94.87  E-value=0.0065  Score=56.65  Aligned_cols=32  Identities=31%  Similarity=0.305  Sum_probs=25.8

Q ss_pred             cccCcCCeeeeecCCCCchhhHHHHHhCCCCC
Q psy2684         244 FGLDMESRVALVGPNGIGKSTFLNLLKGELTP  275 (356)
Q Consensus       244 ~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~  275 (356)
                      +....+..++++|+||+||||+++.+++.+.+
T Consensus        51 ~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~   82 (341)
T 2p67_A           51 PYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIR   82 (341)
T ss_dssp             GGCSCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            33455678999999999999999999876543

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=94.85  E-value=0.009  Score=51.75  Aligned_cols=26  Identities=27%  Similarity=0.333  Sum_probs=21.8

Q ss_pred             CCCeEEEEcCCCCCcchhhhhhcccc
Q psy2684         205 MESRVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       205 ~ge~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      .+-++.|+|++||||||+.+.|+..+
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l   29 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKY   29 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34578999999999999999997543

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=94.85  E-value=0.0091  Score=52.95  Aligned_cols=22  Identities=18%  Similarity=0.205  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCcchhhhhhccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      +++|.|+.||||||+.+.|+..
T Consensus        24 iI~I~G~~GSGKST~a~~L~~~   45 (252)
T 1uj2_A           24 LIGVSGGTASGKSSVCAKIVQL   45 (252)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999774

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=94.84  E-value=0.008  Score=62.31  Aligned_cols=71  Identities=15%  Similarity=0.241  Sum_probs=53.1

Q ss_pred             CCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHH-HHHHHhcC--cEEEE-EecChhHHhhhcCE
Q psy2684           4 KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTN-HLDLNAVIWL-DNYLQTWK--KTLLV-VSHDQSFLNNICTD   74 (356)
Q Consensus         4 ~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~-~LD~~~~~~l-~~~l~~~~--~tvi~-vsHd~~~l~~~~~~   74 (356)
                      ..+.-+|+|+.+|..++..++.+++++|||||.. +||......+ ..++....  .+|++ +|||.+.+..+++.
T Consensus       186 ~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~  261 (773)
T 2xau_A          186 TILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFND  261 (773)
T ss_dssp             CSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTS
T ss_pred             CCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcC
Confidence            3456689999999999999999999999999996 8997765443 34443332  35555 48998877776654

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=94.84  E-value=0.0085  Score=49.23  Aligned_cols=22  Identities=36%  Similarity=0.684  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCcchhhhhhccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      .++|+|+.|+|||||++.+.+-
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999999764

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=94.84  E-value=0.012  Score=50.07  Aligned_cols=32  Identities=28%  Similarity=0.413  Sum_probs=26.6

Q ss_pred             CeEEEEcCCCCCcchhhhhhccccccCCCcee
Q psy2684         207 SRVALVGPNGIGKSTFLNLLKGELTPNKGKVL  238 (356)
Q Consensus       207 e~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~  238 (356)
                      ..+.|.||+|+|||||+++++.........+.
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~   86 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSL   86 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence            67899999999999999999988765555544

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=94.83  E-value=0.011  Score=50.22  Aligned_cols=25  Identities=44%  Similarity=0.579  Sum_probs=21.7

Q ss_pred             CCeEEEEcCCCCCcchhhhhhcccc
Q psy2684         206 ESRVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       206 ge~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      +-+++|+|+.||||||+.+.|+..+
T Consensus        20 ~~~I~l~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           20 HMRVLLLGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4578999999999999999998644

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=94.82  E-value=0.01  Score=48.85  Aligned_cols=23  Identities=30%  Similarity=0.377  Sum_probs=20.8

Q ss_pred             CeEEEEcCCCCCcchhhhhhccc
Q psy2684         207 SRVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       207 e~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      ++++|+|+.||||||+.+.|+..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~   30 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLA   30 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            57899999999999999999764

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=94.80  E-value=0.012  Score=52.88  Aligned_cols=25  Identities=44%  Similarity=0.620  Sum_probs=22.1

Q ss_pred             CeeeeecCCCCchhhHHHHHhCCCC
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKGELT  274 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g~~~  274 (356)
                      .+++++|++|+|||||++.+.|...
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~~~   28 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGLRQ   28 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTTCE
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCc
Confidence            3689999999999999999998643

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=94.79  E-value=0.0082  Score=49.39  Aligned_cols=22  Identities=27%  Similarity=0.499  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCcchhhhhhccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      .++|+|+.|+|||||++.+.+-
T Consensus        11 ~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           11 KLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4799999999999999998875

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=94.79  E-value=0.0091  Score=49.99  Aligned_cols=23  Identities=26%  Similarity=0.300  Sum_probs=20.5

Q ss_pred             CeEEEEcCCCCCcchhhhhhccc
Q psy2684         207 SRVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       207 e~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      .+++|+|+.||||||+.+.|+..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~~   29 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999754

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=94.77  E-value=0.0098  Score=53.48  Aligned_cols=23  Identities=39%  Similarity=0.518  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      .++|+|.+|+|||||++.|.+..
T Consensus        10 ~I~vvG~~g~GKSTLin~L~~~~   32 (274)
T 3t5d_A           10 TLMVVGESGLGKSTLINSLFLTD   32 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHSSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47999999999999999987754

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=94.76  E-value=0.011  Score=51.16  Aligned_cols=29  Identities=14%  Similarity=0.158  Sum_probs=25.2

Q ss_pred             CCCeEEEEcCCCCCcchhhhhhccccccC
Q psy2684         205 MESRVALVGPNGIGKSTFLNLLKGELTPN  233 (356)
Q Consensus       205 ~ge~~~i~G~nGsGKSTll~~l~gl~~p~  233 (356)
                      .+..+.|.||+|+||||+++.++......
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~   79 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANEL   79 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            57889999999999999999998876544

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=94.74  E-value=0.009  Score=55.70  Aligned_cols=30  Identities=17%  Similarity=0.413  Sum_probs=26.3

Q ss_pred             cCCCeEEEEcCCCCCcchhhhhhccccccC
Q psy2684         204 DMESRVALVGPNGIGKSTFLNLLKGELTPN  233 (356)
Q Consensus       204 ~~ge~~~i~G~nGsGKSTll~~l~gl~~p~  233 (356)
                      ..+..+.|.||+|+|||||++.+++...+.
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~   72 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK   72 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            457789999999999999999999987664

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=94.72  E-value=0.01  Score=50.41  Aligned_cols=23  Identities=30%  Similarity=0.375  Sum_probs=20.1

Q ss_pred             CeEEEEcCCCCCcchhhhhhccc
Q psy2684         207 SRVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       207 e~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      -+++|.|+.||||||+.+.|+..
T Consensus        16 ~~I~l~G~~GsGKsT~~~~L~~~   38 (203)
T 1ukz_A           16 SVIFVLGGPGAGKGTQCEKLVKD   38 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999988754

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=94.70  E-value=0.0098  Score=48.27  Aligned_cols=22  Identities=23%  Similarity=0.478  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCcchhhhhhccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      .++|+|+.|+|||||++.+.+-
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999998864

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=94.70  E-value=0.014  Score=56.33  Aligned_cols=65  Identities=20%  Similarity=0.269  Sum_probs=44.8

Q ss_pred             CCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCC
Q psy2684         206 ESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       206 ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      ++.+.+-..+|.|-..|+..+...++.......  ... .....-+++++|+||+|||||++.++|..
T Consensus       140 ~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~--~~~-~~~~~~kvaivG~~gvGKSTLln~l~g~~  204 (439)
T 1mky_A          140 GEPIPVSAEHNINLDTMLETIIKKLEEKGLDLE--SKP-EITDAIKVAIVGRPNVGKSTLFNAILNKE  204 (439)
T ss_dssp             CSCEECBTTTTBSHHHHHHHHHHHHHHTTCCSS--SCC-CCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred             CCEEEEeccCCCCHHHHHHHHHHhcccccccch--hcc-ccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence            567788888999988888888766543211100  000 01123479999999999999999999974

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=94.69  E-value=0.01  Score=53.02  Aligned_cols=26  Identities=38%  Similarity=0.400  Sum_probs=22.3

Q ss_pred             CCCeEEEEcCCCCCcchhhhhhcccc
Q psy2684         205 MESRVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       205 ~ge~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      ++.++.|+|++||||||+.+.|+..+
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L   28 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKIL   28 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            35579999999999999999998653

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=94.69  E-value=0.0098  Score=49.38  Aligned_cols=23  Identities=30%  Similarity=0.543  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            47999999999999999998643

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=94.66  E-value=0.01  Score=49.78  Aligned_cols=23  Identities=26%  Similarity=0.502  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         9 ki~v~G~~~~GKSsli~~l~~~~   31 (208)
T 3clv_A            9 KTVLLGESSVGKSSIVLRLTKDT   31 (208)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            48999999999999999998863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	356
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	1e-17
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	4e-12
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	2e-15
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	2e-12
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	2e-15
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	3e-10
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	3e-15
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	1e-11
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	6e-14
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	8e-13
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	1e-13
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	6e-10
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	2e-13
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	2e-13
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	1e-12
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	2e-13
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	1e-11
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	3e-13
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	3e-12
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	5e-13
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	2e-12
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	1e-12
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	5e-09
g1ii8.1	369	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	2e-12
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	2e-12
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	3e-12
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	3e-12
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	4e-12
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	7e-12
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	7e-06
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	7e-12
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	7e-10
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	1e-11
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	2e-05
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	1e-11
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	2e-05
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	2e-11
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	3e-10
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	3e-11
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	3e-07
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	6e-11
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	1e-09
d1ye8a1	178	c.37.1.11 (A:1-178) Hypothetical kinase-like prote	6e-08
d1ye8a1	178	c.37.1.11 (A:1-178) Hypothetical kinase-like prote	1e-07
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	0.001
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	0.002

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score = 79.1 bits (195), Expect = 1e-17
 Identities = 34/175 (19%), Positives = 66/175 (37%), Gaps = 25/175 (14%)

Query: 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
           +L    V F Y   + +L  ++F     S +A  GP+G GKST  +LL+    P  G++ 
Sbjct: 1   MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60

Query: 239 LEKVNF-GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGE 297
           ++      + +E+  + +G      +     ++               L  G    ++ E
Sbjct: 61  IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIR-------------ENLTYGLEGDYTDE 107

Query: 298 HLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
            L+                 ++   ++G  G            +SGGQ+ R+A+A
Sbjct: 108 DLWQVLDLAF-ARSFVENMPDQLNTEVGERG----------VKISGGQRQRLAIA 151

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score = 63.0 bits (153), Expect = 4e-12
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 3/74 (4%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHDQ 65
           + SGG R R+++ARA    P +L+LDE T  LD  +   +   L +  K  T LV++H  
Sbjct: 139 KISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRL 198

Query: 66  SFLNNICTDIIHLD 79
           S + +    I  ++
Sbjct: 199 STIVD-ADKIYFIE 211

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 73.0 bits (179), Expect = 2e-15
 Identities = 39/178 (21%), Positives = 68/178 (38%), Gaps = 39/178 (21%)

Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241
           L DV   + G    + +++  +     + L+GP+G GK+T L ++ G   P++G++ +  
Sbjct: 6   LVDVWKVF-GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGD 64

Query: 242 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFP 301
                                            P KG         I    Q     L+P
Sbjct: 65  KLVA----------------------------DPEKGIFVPPKDRDIAMVFQS--YALYP 94

Query: 302 DDTPCEYLM---KLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALA 352
             T  + +    KL  +P ++  ++      + GL    +  P R+LSGGQ+ RVAL 
Sbjct: 95  HMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP-RELSGGQRQRVALG 151

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 64.2 bits (156), Expect = 2e-12
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 4/85 (4%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNY----LQTWKKTL 58
            +  +E SGG R RV+L RA+  +P + L+DEP ++LD    + +        +    T 
Sbjct: 134 NRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTT 193

Query: 59  LVVSHDQSFLNNICTDIIHLDMKKL 83
           + V+HDQ     +   I  ++   L
Sbjct: 194 IYVTHDQVEAMTMGDRIAVMNRGVL 218

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score = 73.0 bits (179), Expect = 2e-15
 Identities = 41/181 (22%), Positives = 72/181 (39%), Gaps = 30/181 (16%)

Query: 180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL 239
           L + D+   Y GG  +L+ V+        ++++G +G GKSTFL  +     P++G +++
Sbjct: 3   LHVIDLHKRY-GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIV 61

Query: 240 EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHL 299
              N                      +    G+L        +  R R+    QH   +L
Sbjct: 62  NGQNI-------------------NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHF--NL 100

Query: 300 FPDDTPCEYLM----KLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVAL 351
           +   T  E +M    ++  L    +R +    L   G+   A       LSGGQ+ RV++
Sbjct: 101 WSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSI 160

Query: 352 A 352
           A
Sbjct: 161 A 161

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score = 57.9 bits (140), Expect = 3e-10
 Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 3/86 (3%)

Query: 1   MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK---KT 57
            Q K     SGG + RVS+ARAL +EP +LL DEPT+ LD   V  +   +Q      KT
Sbjct: 142 AQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKT 201

Query: 58  LLVVSHDQSFLNNICTDIIHLDMKKL 83
           ++VV+H+  F  ++ + +I L   K+
Sbjct: 202 MVVVTHEMGFARHVSSHVIFLHQGKI 227

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score = 72.2 bits (177), Expect = 3e-15
 Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 24/135 (17%)

Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--------------KSP 284
           L  V+  +       ++G +G GKST +  +     P +G +                  
Sbjct: 21  LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80

Query: 285 RLRIGKFDQHSGEHLFPDDTPCEYL---MKLFNLPYEKSRRQ----LGMFGLPSYAHTIP 337
           R +IG   QH   +L    T    +   ++L N P ++ +R+    L + GL     + P
Sbjct: 81  RRQIGMIFQHF--NLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP 138

Query: 338 IRDLSGGQKARVALA 352
             +LSGGQK RVA+A
Sbjct: 139 -SNLSGGQKQRVAIA 152

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score = 61.4 bits (149), Expect = 1e-11
 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 4/85 (4%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD----LNAVIWLDNYLQTWKKTL 58
           +      SGG + RV++ARAL   P +LL DE T+ LD     + +  L +  +    T+
Sbjct: 135 DSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTI 194

Query: 59  LVVSHDQSFLNNICTDIIHLDMKKL 83
           L+++H+   +  IC  +  +   +L
Sbjct: 195 LLITHEMDVVKRICDCVAVISNGEL 219

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 68.3 bits (167), Expect = 6e-14
 Identities = 30/134 (22%), Positives = 55/134 (41%), Gaps = 19/134 (14%)

Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR---------KSPR 285
               + K+N  +     + L+GP+G GK+T L ++ G   P +G +              
Sbjct: 18  NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKD 77

Query: 286 LRIGKFDQHSGEHLFPDDTPCEYL---MKLFNLPYEKSRRQ----LGMFGLPSYAHTIPI 338
             I    Q     ++P  T  E +   +K+   P ++  ++      +  +    +  P 
Sbjct: 78  RNISMVFQSY--AVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP- 134

Query: 339 RDLSGGQKARVALA 352
             LSGGQ+ RVA+A
Sbjct: 135 AQLSGGQRQRVAVA 148

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 65.2 bits (159), Expect = 8e-13
 Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 4   KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQ----TWKKTLL 59
           +   + SGG R RV++ARA+ +EP +LL+DEP ++LD    + +   ++      K T +
Sbjct: 132 RYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTI 191

Query: 60  VVSHDQSFLNNICTDIIHLDMKKL 83
            V+HDQ     +   I  ++  +L
Sbjct: 192 YVTHDQVEAMTMGDRIAVMNRGQL 215

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 67.3 bits (164), Expect = 1e-13
 Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 19/134 (14%)

Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR---------KSPR 285
             V+ + +N  +     V  VGP+G GKST L ++ G  T   G+L              
Sbjct: 12  EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE 71

Query: 286 LRIGKFDQHSGEHLFPDDTPCEYL---MKLFNLPYEKSRRQ----LGMFGLPSYAHTIPI 338
             +G   Q     L+P  +  E +   +KL     E   ++      +  L       P 
Sbjct: 72  RGVGMVFQS--YALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP- 128

Query: 339 RDLSGGQKARVALA 352
           + LSGGQ+ RVA+ 
Sbjct: 129 KALSGGQRQRVAIG 142

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 56.5 bits (136), Expect = 6e-10
 Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 4/85 (4%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNY----LQTWKKTL 58
           ++  K  SGG R RV++ R L  EP++ LLDEP ++LD    + +        +   +T+
Sbjct: 125 DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTM 184

Query: 59  LVVSHDQSFLNNICTDIIHLDMKKL 83
           + V+HDQ     +   I+ LD  ++
Sbjct: 185 IYVTHDQVEAMTLADKIVVLDAGRV 209

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 66.8 bits (163), Expect = 2e-13
 Identities = 45/184 (24%), Positives = 69/184 (37%), Gaps = 43/184 (23%)

Query: 182 LHDVTFGYPGGK---VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
           L +VT  Y  G+     L+ VN  +     V+++GP+G GKST LN++     P +G+V 
Sbjct: 4   LKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVY 63

Query: 239 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH 298
           ++ +                                 +  EL K  R +IG   Q    +
Sbjct: 64  IDNIKT----------------------------NDLDDDELTKIRRDKIGFVFQQF--N 93

Query: 299 LFPDDTPCE------YLMKLFNLPYEKSRRQL----GMFGLPSYAHTIPIRDLSGGQKAR 348
           L P  T  E             +  E+ R++      M  L           LSGGQ+ R
Sbjct: 94  LIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQR 153

Query: 349 VALA 352
           VA+A
Sbjct: 154 VAIA 157

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 64.5 bits (157), Expect = 1e-12
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 5/76 (6%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYL----QTWKKTLLVVSH 63
           + SGG + RV++ARAL   P ++L D+PT  LD      +   L    +   KT++VV+H
Sbjct: 145 QLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204

Query: 64  DQSFLNNICTDIIHLD 79
           D +        II+L 
Sbjct: 205 DINVA-RFGERIIYLK 219

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.2 bits (164), Expect = 2e-13
 Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 13/128 (10%)

Query: 234 KGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQ 293
            G  +L+ +N  ++    +A+ G  G GK++ L L+ GEL  ++G ++ S   R+    Q
Sbjct: 47  VGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG--RVSFCSQ 104

Query: 294 HSGEHLFPDDTPCEYLMKLFNLPYEK------SRRQLGMFGLPSYAHTIPIR---DLSGG 344
            S   + P       +  +    Y         + Q  +       +T+       LSGG
Sbjct: 105 FS--WIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGG 162

Query: 345 QKARVALA 352
           Q+AR++LA
Sbjct: 163 QRARISLA 170

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.2 bits (151), Expect = 1e-11
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 4/75 (5%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDL---NAVIWLDNYLQTWKKTLLVVSHD 64
             SGG R R+SLARA++ +  L LLD P  +LD+     V           KT ++V+  
Sbjct: 158 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK 217

Query: 65  QSFLNNICTDIIHLD 79
              L      I+ L 
Sbjct: 218 MEHLRK-ADKILILH 231

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 66.5 bits (162), Expect = 3e-13
 Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 3/82 (3%)

Query: 1   MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK---T 57
           + ++   E SGG    V + RAL   P ++++DEP   +       + N++   K    T
Sbjct: 143 LYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGIT 202

Query: 58  LLVVSHDQSFLNNICTDIIHLD 79
            L++ H    + N    +  + 
Sbjct: 203 FLIIEHRLDIVLNYIDHLYVMF 224

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 63.5 bits (154), Expect = 3e-12
 Identities = 36/182 (19%), Positives = 65/182 (35%), Gaps = 31/182 (17%)

Query: 179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL 238
           +L   ++   + G    L+ V+  ++      ++GPNG GKST +N++ G L  ++G+V 
Sbjct: 4   ILRTENIVKYF-GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 62

Query: 239 LEKVNFGLDMESRVALVGPNGI--------GKSTFLNLLKGELTPNKGELRKSPRLRIGK 290
            E  +      + +   G              +   NLL GE+ P +  L      +   
Sbjct: 63  FENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP 122

Query: 291 FDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVA 350
            ++                        EK+ + L    L          +LSGGQ   V 
Sbjct: 123 KEEEM---------------------VEKAFKILEFLKLSHLYDR-KAGELSGGQMKLVE 160

Query: 351 LA 352
           + 
Sbjct: 161 IG 162

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score = 66.0 bits (161), Expect = 5e-13
 Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 3/74 (4%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHDQ 65
           + SGG + R+S+AR     P +L+LDE T+ LDL +   +   L    K  T L+V+H  
Sbjct: 154 KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRL 213

Query: 66  SFLNNICTDIIHLD 79
           S + +    I+ ++
Sbjct: 214 STITH-ADKIVVIE 226

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score = 64.0 bits (156), Expect = 2e-12
 Identities = 38/178 (21%), Positives = 68/178 (38%), Gaps = 37/178 (20%)

Query: 182 LHDVTFGYPGGKVL-LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
           +  V+F Y   +   L+ +N  ++    VA VG +G GKST +NL+        G++L++
Sbjct: 19  IDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILID 78

Query: 241 KVN-FGLDMESRVALVG-----PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQH 294
             N       S    +G           +   N+L G  T    E+ ++ ++        
Sbjct: 79  GHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKM-------- 130

Query: 295 SGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
           +  H F  + P  Y  ++     +                      LSGGQK R+++A
Sbjct: 131 ANAHDFIMNLPQGYDTEVGERGVK----------------------LSGGQKQRLSIA 166

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score = 64.6 bits (157), Expect = 1e-12
 Identities = 35/173 (20%), Positives = 59/173 (34%), Gaps = 27/173 (15%)

Query: 182 LHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
             ++ F Y     V+L+ +N  +     + +VG +G GKST   L++    P  G+VL++
Sbjct: 4   FRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLID 63

Query: 241 KVNF-GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHL 299
             +    D       VG   + +   L             L +S    I   +       
Sbjct: 64  GHDLALADPNWLRRQVGV--VLQDNVL-------------LNRSIIDNISLANPGMSVEK 108

Query: 300 FPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
                         +   E     +G  G            LSGGQ+ R+A+A
Sbjct: 109 VIYAAKLAGAHDFISELREGYNTIVGEQG----------AGLSGGQRQRIAIA 151

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score = 53.8 bits (129), Expect = 5e-09
 Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 3/74 (4%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHDQ 65
             SGG R R+++ARAL   P +L+ DE T+ LD  +   +   +    K  T+++++H  
Sbjct: 139 GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRL 198

Query: 66  SFLNNICTDIIHLD 79
           S + N    II ++
Sbjct: 199 STVKN-ADRIIVME 211

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score = 63.8 bits (155), Expect = 2e-12
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK---TLL 59
           ++     SGG +  +++ RAL   P LL++DEP+  L    V  +   +Q   +   T+L
Sbjct: 134 KQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTIL 193

Query: 60  VVSHDQSFLNNICTDIIHLD 79
           +V  +      +      L+
Sbjct: 194 LVEQNALGALKVAHYGYVLE 213

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score = 63.4 bits (154), Expect = 3e-12
 Identities = 29/135 (21%), Positives = 53/135 (39%), Gaps = 18/135 (13%)

Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------- 284
               ++ ++  +     V L+G NG GK+T L+ + G +   KG++  +           
Sbjct: 18  AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHV 77

Query: 285 RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ------LGMF-GLPSYAHTIP 337
             R+G      G  +FP+ T  E LM       +K   +        +F  L      + 
Sbjct: 78  INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLG 137

Query: 338 IRDLSGGQKARVALA 352
              LSGG++  +A+ 
Sbjct: 138 -GTLSGGEQQMLAIG 151

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 63.7 bits (155), Expect = 3e-12
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 3/74 (4%)

Query: 8   EFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK--TLLVVSHDQ 65
             SGG R R+++ARAL  +  +L+LDE T+ LD  +   +   L   +K  T LV++H  
Sbjct: 152 LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRL 211

Query: 66  SFLNNICTDIIHLD 79
           S +     +I+ ++
Sbjct: 212 STIEQ-ADEIVVVE 224

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 63.3 bits (154), Expect = 4e-12
 Identities = 39/203 (19%), Positives = 74/203 (36%), Gaps = 40/203 (19%)

Query: 151 DEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKV-LLEKVNFGLDMESRV 209
           DE K ++++    +                   +VTF YPG +V  L  +N  +     V
Sbjct: 1   DEGKRVIDRATGDLE----------------FRNVTFTYPGREVPALRNINLKIPAGKTV 44

Query: 210 ALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 269
           ALVG +G GKST  +L+      ++G +L++           +       +     L   
Sbjct: 45  ALVGRSGSGKSTIASLITRFYDIDEGHILMD--------GHDLREYTLASLRNQVALVSQ 96

Query: 270 KGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGL 329
              L  +      +  +   + +++S E +         +  +  +            GL
Sbjct: 97  NVHLFND----TVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDN----------GL 142

Query: 330 PSYAHTIPIRDLSGGQKARVALA 352
            +      +  LSGGQ+ R+A+A
Sbjct: 143 DTIIGENGVL-LSGGQRQRIAIA 164

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 62.4 bits (151), Expect = 7e-12
 Identities = 39/178 (21%), Positives = 72/178 (40%), Gaps = 42/178 (23%)

Query: 182 LHDVTFGYPGGKVL-LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLE 240
           + +V+  +  GKV+ L+ VN  ++   R  ++GP+G GK+TF+ ++ G   P+ G++  +
Sbjct: 6   VKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFD 65

Query: 241 KVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLR-IGKFDQHSGEHL 299
                                           L  + G+L   P  R IG   Q     L
Sbjct: 66  ------------------------------DRLVASNGKLIVPPEDRKIGMVFQT--WAL 93

Query: 300 FPDDTPCEYL---MKLFNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVA 350
           +P+ T  E +   +    +      ++      +  +    +  P R+LSG Q+ RVA
Sbjct: 94  YPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-RELSGAQQQRVA 150

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 44.3 bits (104), Expect = 7e-06
 Identities = 32/81 (39%), Positives = 42/81 (51%), Gaps = 4/81 (4%)

Query: 7   KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNY----LQTWKKTLLVVS 62
           +E SG  + RV+LARAL  +P+LLLLDEP ++LD                    TLLVVS
Sbjct: 139 RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVS 198

Query: 63  HDQSFLNNICTDIIHLDMKKL 83
           HD + +  I   +  L   KL
Sbjct: 199 HDPADIFAIADRVGVLVKGKL 219

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score = 62.3 bits (151), Expect = 7e-12
 Identities = 30/171 (17%), Positives = 54/171 (31%), Gaps = 30/171 (17%)

Query: 182 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK 241
           + D+     G K +L+ ++F ++      L+GPNG GK+T L ++   + P+ G V +  
Sbjct: 5   VKDLRKRI-GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFG 63

Query: 242 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFP 301
            N   +      L+         + N+   E          S    I             
Sbjct: 64  KNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEI------------- 110

Query: 302 DDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
                           E   R   + GL        +   S G   ++ +A
Sbjct: 111 ---------------EEMVERATEIAGLGEKIKD-RVSTYSKGMVRKLLIA 145

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score = 56.5 bits (136), Expect = 7e-10
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 3/80 (3%)

Query: 7   KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK---TLLVVSH 63
             +S G   ++ +ARAL + P L +LDEPT+ LD+     +   L+   +   T+LV SH
Sbjct: 132 STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSH 191

Query: 64  DQSFLNNICTDIIHLDMKKL 83
           +   +  +C  I  +    +
Sbjct: 192 NMLEVEFLCDRIALIHNGTI 211

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 62.0 bits (150), Expect = 1e-11
 Identities = 36/125 (28%), Positives = 51/125 (40%), Gaps = 18/125 (14%)

Query: 242 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR---------KSPRLRIGKFD 292
           V+F +  +    L+GP G GKS FL L+ G + P++GE+R            R  IG   
Sbjct: 18  VDFEMGRD-YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVP 76

Query: 293 QHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ-----LGMFGLPSYAHTIPIRDLSGGQKA 347
           Q     LFP  +    +           R +         G+       P   LSGG++ 
Sbjct: 77  QD--YALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP-ARLSGGERQ 133

Query: 348 RVALA 352
           RVALA
Sbjct: 134 RVALA 138

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 42.7 bits (100), Expect = 2e-05
 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 4/81 (4%)

Query: 3   EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLD---LNAVIWLDNYLQTW-KKTL 58
           ++     SGG R RV+LARAL ++P LLLLDEP + +D      ++    ++Q      +
Sbjct: 121 DRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPI 180

Query: 59  LVVSHDQSFLNNICTDIIHLD 79
           L V+HD      +  ++  + 
Sbjct: 181 LHVTHDLIEAAMLADEVAVML 201

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score = 61.2 bits (148), Expect = 1e-11
 Identities = 27/130 (20%), Positives = 47/130 (36%), Gaps = 16/130 (12%)

Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR---------KSPR 285
               L+ ++  ++      ++GP G GK+ FL L+ G   P+ G +             +
Sbjct: 12  KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK 71

Query: 286 LRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY----EKSRRQLGMFGLPSYAHTIPIRDL 341
             I    Q+    LFP     + L     +      ++         +       P   L
Sbjct: 72  HDIAFVYQN--YSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-LTL 128

Query: 342 SGGQKARVAL 351
           SGG++ RVAL
Sbjct: 129 SGGEQQRVAL 138

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score = 42.7 bits (100), Expect = 2e-05
 Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 1   MQEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNY----LQTWKK 56
           + +++    SGG + RV+LARAL   P +LLLDEP + LD               +  K 
Sbjct: 120 LLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKL 179

Query: 57  TLLVVSHDQSFLNNICTDIIHLDMKKL 83
           T+L ++HDQ+    +   I  +   KL
Sbjct: 180 TVLHITHDQTEARIMADRIAVVMDGKL 206

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score = 60.7 bits (147), Expect = 2e-11
 Identities = 30/128 (23%), Positives = 45/128 (35%), Gaps = 13/128 (10%)

Query: 236 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR---------KSPRL 286
              L  ++  +     + LVGPNG GKST L  + G +T  KG ++          + +L
Sbjct: 12  STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSATKL 70

Query: 287 RIGKFDQHSGEHLFPDDTPCEYLMKLFNLP--YEKSRRQLGMFGLPSYAHTIPIRDLSGG 344
            + +      +          YL    +     E      G   L           LSGG
Sbjct: 71  ALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGR-STNQLSGG 129

Query: 345 QKARVALA 352
           +  RV LA
Sbjct: 130 EWQRVRLA 137

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score = 57.6 bits (139), Expect = 3e-10
 Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 10/91 (10%)

Query: 3   EKSTKEFSGGWRIRVSLARAL-------FLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWK 55
            +ST + SGG   RV LA  +            LLLLDEP N LD+     LD  L    
Sbjct: 120 GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALC 179

Query: 56  K---TLLVVSHDQSFLNNICTDIIHLDMKKL 83
           +    +++ SHD +           L   K+
Sbjct: 180 QQGLAIVMSSHDLNHTLRHAHRAWLLKGGKM 210

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 59.9 bits (145), Expect = 3e-11
 Identities = 29/128 (22%), Positives = 48/128 (37%), Gaps = 15/128 (11%)

Query: 235 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK------GELRKSPRLRI 288
            K +LE++   ++  + V   GPNGIGK+T L  +   L P K      G      + +I
Sbjct: 13  DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKI 72

Query: 289 GKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ-----LGMFGLPSYAHTIPIRDLSG 343
               +          +  +YL  + +L   K  +      L    +        + +LS 
Sbjct: 73  FFLPEEIIV--PRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKK--KLGELSQ 128

Query: 344 GQKARVAL 351
           G   RV L
Sbjct: 129 GTIRRVQL 136

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 48.4 bits (115), Expect = 3e-07
 Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 6/80 (7%)

Query: 2   QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTWKK----T 57
            +K   E S G   RV LA  L +   + +LD+P   +D ++   +   +    K     
Sbjct: 119 LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV 178

Query: 58  LLVVSHDQSFLNNICTDIIH 77
           ++    + S+ +    + +H
Sbjct: 179 IISSREELSYCDVN--ENLH 196

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (145), Expect = 6e-11
 Identities = 45/183 (24%), Positives = 66/183 (36%), Gaps = 30/183 (16%)

Query: 176 PPPVLG---LHDVTFGYPGGK--VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL 230
           P  + G     DV+F YP     ++L+ + F L      ALVGPNG GKST   LL+   
Sbjct: 5   PLHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLY 64

Query: 231 TPNKGKVLLEKVNF-GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIG 289
            P  G++LL+       +       V   G     F   L+               +  G
Sbjct: 65  QPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQ-------------ENIAYG 111

Query: 290 KFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARV 349
              + + E +            +  LP +    ++   G            LSGGQ+  V
Sbjct: 112 LTQKPTMEEITAAAVKSGAHSFISGLP-QGYDTEVDEAG----------SQLSGGQRQAV 160

Query: 350 ALA 352
           ALA
Sbjct: 161 ALA 163

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (134), Expect = 1e-09
 Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 5/77 (6%)

Query: 7   KEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIW----LDNYLQTWKKTLLVVS 62
            + SGG R  V+LARAL  +P +L+LD+ T+ LD N+ +     L    + + +++L+++
Sbjct: 150 SQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLIT 209

Query: 63  HDQSFLNNICTDIIHLD 79
              S +      I+ L+
Sbjct: 210 QHLSLVEQ-ADHILFLE 225

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

 Score = 49.6 bits (117), Expect = 6e-08
 Identities = 9/102 (8%), Positives = 23/102 (22%), Gaps = 10/102 (9%)

Query: 251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM 310
           ++ + G  G+GK+T +  +   L                   +     +  +     +  
Sbjct: 2   KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSS 61

Query: 311 KLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 352
           K F          + +             +         A  
Sbjct: 62  KFFTSKKLVGSYGVNV----------QYFEELAIPILERAYR 93

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

 Score = 48.8 bits (115), Expect = 1e-07
 Identities = 8/37 (21%), Positives = 16/37 (43%)

Query: 208 RVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF 244
           ++ + G  G+GK+T +  +   L         E+V  
Sbjct: 2   KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRD 38

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 12/55 (21%), Positives = 17/55 (30%)

Query: 251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTP 305
            V LVG    GKS+ L  +             +    +G  +    E     D P
Sbjct: 3   DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIP 57

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 36.3 bits (82), Expect = 0.002
 Identities = 14/60 (23%), Positives = 22/60 (36%)

Query: 251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM 310
           +V + G    GKS+ LN L G       ++  + R  + +     G  L   DT      
Sbjct: 3   KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREA 62

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	356
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.97
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.97
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.97
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.97
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.96
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.96
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.96
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.96
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.96
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.95
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.95
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.93
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.93
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.93
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.93
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.93
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.92
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.92
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.92
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.92
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.92
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.91
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.91
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.91
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.9
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.9
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.9
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.9
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.89
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.88
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.88
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.88
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.71
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.65
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.38
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	98.97
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.56
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	98.46
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.44
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	97.84
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.59
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.39
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.33
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.32
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.28
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.22
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	97.19
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.01
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.98
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.95
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.84
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	96.79
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.69
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.64
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	96.6
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.58
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.55
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.54
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.52
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.51
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.37
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.37
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	96.34
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.28
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.27
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.25
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.18
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	96.17
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.14
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	96.11
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.05
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.05
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.01
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.0
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.0
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	95.99
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	95.98
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	95.92
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	95.92
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	95.89
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	95.85
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	95.82
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.82
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	95.81
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	95.75
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	95.75
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.75
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	95.73
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.73
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	95.69
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.68
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	95.66
d1nrjb_	209	Signal recognition particle receptor beta-subunit	95.65
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	95.62
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	95.62
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	95.61
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	95.57
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.57
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	95.54
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	95.52
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	95.52
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	95.51
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.5
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	95.47
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	95.47
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	95.47
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	95.47
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	95.41
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	95.4
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	95.4
d1okkd2	207	GTPase domain of the signal recognition particle r	95.39
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	95.39
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	95.36
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	95.34
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	95.31
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	95.31
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	95.3
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	95.25
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	95.23
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	95.17
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	95.16
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	95.16
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.13
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	95.11
d2qy9a2	211	GTPase domain of the signal recognition particle r	95.07
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	95.06
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.06
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	95.03
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	95.01
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	94.99
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	94.97
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	94.95
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	94.94
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	94.93
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	94.92
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	94.89
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	94.87
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	94.85
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	94.83
d1vmaa2	213	GTPase domain of the signal recognition particle r	94.82
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	94.8
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	94.78
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	94.76
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.76
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.76
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	94.73
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	94.69
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	94.67
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	94.65
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	94.57
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	94.57
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	94.56
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	94.53
d2fh5b1	207	Signal recognition particle receptor beta-subunit	94.52
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	94.51
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	94.49
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	94.43
d1j8yf2	211	GTPase domain of the signal sequence recognition p	94.42
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	94.4
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	94.39
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	94.38
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	94.35
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	94.31
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	94.31
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	94.3
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	94.27
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	94.26
d1ls1a2	207	GTPase domain of the signal sequence recognition p	94.25
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	94.23
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	94.22
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	94.2
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	94.2
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	94.13
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	94.13
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	94.05
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	94.02
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	94.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	94.0
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	94.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	93.98
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	93.98
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	93.97
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	93.96
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	93.95
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	93.89
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	93.89
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	93.89
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	93.88
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	93.85
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	93.83
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	93.82
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	93.81
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	93.79
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	93.77
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	93.76
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	93.76
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	93.74
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	93.72
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	93.71
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	93.69
d1nrjb_	209	Signal recognition particle receptor beta-subunit	93.68
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	93.66
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	93.64
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	93.63
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	93.54
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	93.52
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	93.5
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	93.47
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	93.46
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	93.46
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	93.46
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	93.46
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	93.44
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	93.4
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	93.39
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	93.37
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	93.35
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	93.35
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	93.34
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	93.34
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	93.31
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	93.31
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	93.29
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	93.27
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	93.26
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	93.24
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	93.23
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	93.2
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	93.18
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	93.17
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	93.17
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	93.15
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	93.13
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	93.09
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	93.07
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	93.07
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	93.07
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	93.06
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	93.0
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	92.97
d1vmaa2	213	GTPase domain of the signal recognition particle r	92.94
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	92.91
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	92.86
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	92.85
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	92.84
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	92.84
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	92.84
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	92.82
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	92.82
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	92.82
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	92.8
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	92.77
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	92.74
d1xpua3	289	Transcription termination factor Rho, ATPase domai	92.74
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	92.73
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	92.7
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	92.7
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	92.69
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	92.68
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	92.67
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	92.65
d1okkd2	207	GTPase domain of the signal recognition particle r	92.62
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	92.62
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	92.58
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	92.58
d2fh5b1	207	Signal recognition particle receptor beta-subunit	92.55
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	92.52
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	92.51
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	92.51
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	92.5
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	92.48
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	92.43
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	92.41
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	92.41
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	92.37
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	92.33
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	92.33
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	92.3
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	92.3
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	92.28
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	92.26
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	92.22
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	92.16
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	92.14
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	92.08
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	92.07
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	92.01
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	91.95
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	91.94
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	91.94
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	91.93
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	91.9
d2qy9a2	211	GTPase domain of the signal recognition particle r	91.88
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	91.87
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	91.87
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	91.87
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	91.82
d1ls1a2	207	GTPase domain of the signal sequence recognition p	91.78
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	91.75
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	91.74
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	91.73
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	91.72
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	91.72
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	91.7
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	91.66
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	91.65
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	91.63
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	91.63
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	91.62
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	91.61
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	91.57
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	91.57
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	91.57
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	91.53
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	91.41
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	91.4
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	91.39
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	91.34
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	91.31
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	91.27
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	91.23
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	91.21
d1j8yf2	211	GTPase domain of the signal sequence recognition p	91.16
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	91.15
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	91.15
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	91.14
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	91.11
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	91.07
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	91.02
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	91.0
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	91.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	90.97
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	90.96
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	90.91
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	90.87
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	90.83
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	90.78
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	90.77
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	90.74
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	90.6
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	90.59
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	90.58
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	90.55
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	90.45
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	90.42
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	90.31
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	90.3
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	90.27
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	90.25
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	90.22
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	90.22
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	89.99
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	89.95
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	89.93
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	89.9
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	89.84
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	89.8
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	89.63
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	89.59
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	89.59
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	89.56
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	89.5
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	89.45
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	89.39
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	89.3
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	89.25
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	89.25
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	89.17
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	89.17
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	89.15
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	89.07
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	89.05
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	89.04
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	88.97
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	88.97
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	88.95
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	88.89
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	88.87
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	88.8
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	88.71
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	88.59
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	88.5
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	88.48
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	88.45
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	88.42
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	88.39
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	88.34
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	88.24
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	88.23
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	87.91
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	87.89
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	87.78
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	87.72
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	87.72
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	87.63
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	87.54
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	87.5
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	87.4
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	87.03
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	87.01
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	86.98
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	86.66
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	86.57
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	86.26
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	86.06
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	86.05
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	85.89
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	85.85
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	85.74
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	85.7
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	85.65
d1xpua3	289	Transcription termination factor Rho, ATPase domai	85.56
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	85.47
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	85.29
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	85.24
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	85.08
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	84.96
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	84.9
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	84.82
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	84.68
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	84.64
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	84.2
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	83.86
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	83.59
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	83.58
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	83.5
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	83.33
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	83.26
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	83.09
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	82.94
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	82.73
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	82.63
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	82.33
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	82.18
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	82.14
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	82.03
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	82.01
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	81.97
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	81.64
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	81.54
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	81.46
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	81.37
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	80.62
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	80.48
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	80.4

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=2.8e-34  Score=254.57  Aligned_cols=146  Identities=25%  Similarity=0.356  Sum_probs=120.9

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      .++++||++.| ++..+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....          
T Consensus         3 ~i~v~nl~k~y-g~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~----------   71 (240)
T d1g2912           3 GVRLVDVWKVF-GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPE----------   71 (240)
T ss_dssp             EEEEEEEEEEE-TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGG----------
T ss_pred             cEEEEeEEEEE-CCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccc----------
Confidence            48999999999 6788999999999999999999999999999999999999999999999998864110          


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCHH----HHHHHHhhcCCCC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPYE----KSRRQLGMFGLPS  331 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~~----~~~~~L~~~~l~~  331 (356)
                                        ........+++|||+||++  .+++.+|+.|++...   .+.+..    .+.++|+.+++.+
T Consensus        72 ------------------~~~~~~~~~r~ig~v~Q~~--~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~  131 (240)
T d1g2912          72 ------------------KGIFVPPKDRDIAMVFQSY--ALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTE  131 (240)
T ss_dssp             ------------------GTEECCGGGSSEEEECSCC--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGG
T ss_pred             ------------------hhhhcccccccceecccch--hhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChh
Confidence                              1111122245799999997  589999999998543   445443    4678999999988


Q ss_pred             ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         332 YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       332 ~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ..++ ++++|||||||||+|||+|+
T Consensus       132 ~~~~-~p~~LSGGqkQRv~IAraL~  155 (240)
T d1g2912         132 LLNR-KPRELSGGQRQRVALGRAIV  155 (240)
T ss_dssp             GTTC-CGGGSCHHHHHHHHHHHHHH
T ss_pred             HhcC-ChhhCCHHHHHHHHHHHHHh
Confidence            7665 67999999999999999973

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=3.4e-34  Score=253.62  Aligned_cols=140  Identities=23%  Similarity=0.348  Sum_probs=113.9

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      .++++|+++.| ++..+|++|||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...           
T Consensus         6 ~I~v~nlsk~y-g~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~-----------   73 (239)
T d1v43a3           6 EVKLENLTKRF-GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYL-----------   73 (239)
T ss_dssp             CEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS-----------
T ss_pred             eEEEEEEEEEE-CCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccC-----------
Confidence            38999999999 678899999999999999999999999999999999999999999999999886310           


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcCCCC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPS  331 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~l~~  331 (356)
                                     .        ..+++|||+||++  .+++.+|+.|++...   .+.+.    +.+.++|+.+|+.+
T Consensus        74 ---------------~--------~~~r~ig~v~Q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  128 (239)
T d1v43a3          74 ---------------P--------PKDRNISMVFQSY--AVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEE  128 (239)
T ss_dssp             ---------------C--------GGGGTEEEEEC--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGG
T ss_pred             ---------------C--------cccceEEEEeech--hhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh
Confidence                           0        0124699999997  589999999998643   24443    34567899999988


Q ss_pred             ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         332 YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       332 ~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ..++ ++.+|||||||||+|||+|+
T Consensus       129 ~~~~-~~~~LSGGq~QRvaiAraL~  152 (239)
T d1v43a3         129 LLNR-YPAQLSGGQRQRVAVARAIV  152 (239)
T ss_dssp             GTTS-CTTTCCSSCHHHHHHHHHHT
T ss_pred             hhcC-ChhhCCHHHHHHHHHHhhhc
Confidence            7765 67999999999999999974

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=3.6e-34  Score=253.62  Aligned_cols=146  Identities=23%  Similarity=0.371  Sum_probs=120.0

Q ss_pred             cEEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         179 VLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       179 ~l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      .++++|+++.|+.+ ..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++....         
T Consensus         3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~---------   73 (242)
T d1oxxk2           3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNG---------   73 (242)
T ss_dssp             CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETT---------
T ss_pred             EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCc---------
Confidence            47999999999644 46899999999999999999999999999999999999999999999998874210         


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcCCC
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLP  330 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~l~  330 (356)
                                          .......+++|||+||++  .+++.+|+.|++...   .+.+.    +.+.++|+.+|+.
T Consensus        74 --------------------~~~~~~~rr~ig~vfQ~~--~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~  131 (242)
T d1oxxk2          74 --------------------KLIVPPEDRKIGMVFQTW--ALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIH  131 (242)
T ss_dssp             --------------------EESSCGGGSCEEEEETTS--CCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCG
T ss_pred             --------------------hhhcchhhccceEEeccc--cccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChH
Confidence                                000111245799999997  489999999998653   33443    3467899999998


Q ss_pred             CccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         331 SYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       331 ~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +..+. ++++|||||||||+|||+|+
T Consensus       132 ~~~~~-~p~~LSGGqkQRvaiARaL~  156 (242)
T d1oxxk2         132 HVLNH-FPRELSGAQQQRVALARALV  156 (242)
T ss_dssp             GGTTS-CGGGSCHHHHHHHHHHHHHT
T ss_pred             hhhhC-ChhhCCHHHHhHHHHHhHHh
Confidence            77665 67999999999999999974

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=2.3e-34  Score=253.77  Aligned_cols=148  Identities=30%  Similarity=0.361  Sum_probs=116.9

Q ss_pred             cEEEecceeeeCCCc---cccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684         179 VLGLHDVTFGYPGGK---VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV  255 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~---~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv  255 (356)
                      |++++||++.|+.+.   .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.....      
T Consensus         1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~------   74 (230)
T d1l2ta_           1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD------   74 (230)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCH------
T ss_pred             CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCCh------
Confidence            589999999996433   47999999999999999999999999999999999999999999999988742110      


Q ss_pred             cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc------CCCH----HHHHHHHh
Q psy2684         256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF------NLPY----EKSRRQLG  325 (356)
Q Consensus       256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~------~~~~----~~~~~~L~  325 (356)
                                            ......++.+|||+||++  .+++.+|+.|++....      ..+.    +++.++|+
T Consensus        75 ----------------------~~~~~~r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~  130 (230)
T d1l2ta_          75 ----------------------DELTKIRRDKIGFVFQQF--NLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLK  130 (230)
T ss_dssp             ----------------------HHHHHHHHHHEEEECTTC--CCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHH
T ss_pred             ----------------------hhcchhhcceEEEEecch--hhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHH
Confidence                                  001111134699999997  4899999999875421      2232    34667899


Q ss_pred             hcCCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         326 MFGLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       326 ~~~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .+++.+...+++|++|||||||||+|||+|+
T Consensus       131 ~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~  161 (230)
T d1l2ta_         131 MAELEERFANHKPNQLSGGQQQRVAIARALA  161 (230)
T ss_dssp             HTTCCGGGTTCCGGGSCHHHHHHHHHHHHHT
T ss_pred             hhchhhhhhcCChhhCCHHHHHHHHHHhhhh
Confidence            9999864434567999999999999999974

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.5e-34  Score=255.07  Aligned_cols=139  Identities=24%  Similarity=0.358  Sum_probs=87.2

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG  259 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG  259 (356)
                      ++++||+++| ++..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...            
T Consensus         1 Iev~nv~k~y-g~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~------------   67 (232)
T d2awna2           1 VQLQNVTKAW-GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDT------------   67 (232)
T ss_dssp             EEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTS------------
T ss_pred             CEEEEEEEEE-CCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCC------------
Confidence            5899999999 678899999999999999999999999999999999999999999999998876310            


Q ss_pred             CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHhhcCCCCc
Q psy2684         260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSY  332 (356)
Q Consensus       260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~----~~~~~~~L~~~~l~~~  332 (356)
                                    .        ..+++|||+||++  .+++.+|+.|++...   .+.+    .+.+.++|+.+++.+.
T Consensus        68 --------------~--------~~~r~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~  123 (232)
T d2awna2          68 --------------P--------PAERGVGMVFQSY--ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHL  123 (232)
T ss_dssp             --------------C--------GGGTCEEEECSSC--CC---------------------CHHHHHHHHHHHHC-----
T ss_pred             --------------c--------hhhceeeeecccc--ccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhh
Confidence                          0        0134699999997  589999999998543   2222    2457889999999987


Q ss_pred             cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         333 AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       333 ~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .++ ++++|||||||||+|||+|+
T Consensus       124 ~~~-~~~~LSGGqkQRvaiAraL~  146 (232)
T d2awna2         124 LDR-KPKALSGGQRQRVAIGRTLV  146 (232)
T ss_dssp             -----------------CHHHHHH
T ss_pred             hhC-ChhhCCHHHHHHHHHHHHHh
Confidence            765 67999999999999999973

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=8.3e-34  Score=249.52  Aligned_cols=139  Identities=21%  Similarity=0.307  Sum_probs=118.4

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      +|+++|++++| ++ .+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...           
T Consensus         1 mi~v~nlsk~y-~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~-----------   67 (229)
T d3d31a2           1 MIEIESLSRKW-KN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDL-----------   67 (229)
T ss_dssp             CEEEEEEEEEC-SS-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTS-----------
T ss_pred             CEEEEEEEEEe-CC-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEecccc-----------
Confidence            58999999999 44 589999999999999999999999999999999999999999999999886310           


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cC-CCHHHHHHHHhhcCCCCccc
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FN-LPYEKSRRQLGMFGLPSYAH  334 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~-~~~~~~~~~L~~~~l~~~~~  334 (356)
                                     .        ..++++||+||++  .+++.+|+.|++...   .+ ...+++.++++.+++.+..+
T Consensus        68 ---------------~--------~~~r~ig~v~Q~~--~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~  122 (229)
T d3d31a2          68 ---------------S--------PEKHDIAFVYQNY--SLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLD  122 (229)
T ss_dssp             ---------------C--------HHHHTCEEECTTC--CCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTT
T ss_pred             ---------------c--------hhHhcceeecccc--ccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHh
Confidence                           0        0124699999997  589999999998532   23 34567889999999998776


Q ss_pred             cCCCCCCChHHHHHHHHHHHcC
Q psy2684         335 TIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       335 ~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      + ++.+|||||||||+|||+|+
T Consensus       123 ~-~~~~LSGG~~QRvaiAraL~  143 (229)
T d3d31a2         123 R-NPLTLSGGEQQRVALARALV  143 (229)
T ss_dssp             S-CGGGSCHHHHHHHHHHHHTT
T ss_pred             C-ChhhCCHHHhcchhhhhhhh
Confidence            5 67999999999999999985

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.8e-34  Score=253.00  Aligned_cols=145  Identities=28%  Similarity=0.366  Sum_probs=118.3

Q ss_pred             cEEEecceeeeCCCc---cccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684         179 VLGLHDVTFGYPGGK---VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV  255 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~---~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv  255 (356)
                      ||+++|+++.|+.+.   .+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....      
T Consensus         1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~------   74 (240)
T d3dhwc1           1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSE------   74 (240)
T ss_dssp             CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCH------
T ss_pred             CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCCh------
Confidence            589999999996442   58999999999999999999999999999999999999999999999988741100      


Q ss_pred             cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHhhcC
Q psy2684         256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFG  328 (356)
Q Consensus       256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~~~~~----~~~~~~L~~~~  328 (356)
                             .               .+ ...++++||+||++  .+++.+|+.|++...   .+.+.    +.+.++|+.+|
T Consensus        75 -------~---------------~~-~~~rr~ig~VfQ~~--~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vg  129 (240)
T d3dhwc1          75 -------S---------------EL-TKARRQIGMIFQHF--NLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVG  129 (240)
T ss_dssp             -------H---------------HH-HHHHHHEEECCSSC--CCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHS
T ss_pred             -------h---------------hh-hhhhcccccccccc--ccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence                   0               00 01124699999997  488999999998642   33432    45778999999


Q ss_pred             CCCccccCCCCCCChHHHHHHHHHHHc
Q psy2684         329 LPSYAHTIPIRDLSGGQKARVALAELT  355 (356)
Q Consensus       329 l~~~~~~~~~~~LSGGqkqRvalA~~~  355 (356)
                      +.+..+. ++++|||||||||+|||++
T Consensus       130 L~~~~~~-~~~~LSGG~~QRvaiAraL  155 (240)
T d3dhwc1         130 LGDKHDS-YPSNLSGGQKQRVAIARAL  155 (240)
T ss_dssp             TTTTTSS-CBSCCCHHHHHHHHHHHHH
T ss_pred             CchhhhC-ChhhCCHHHHHHHHHhhhh
Confidence            9987765 6799999999999999997

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.97  E-value=1.3e-32  Score=247.39  Aligned_cols=155  Identities=27%  Similarity=0.365  Sum_probs=119.6

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      .|+++||++.| ++..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..........   .
T Consensus         2 ~Lev~nl~k~y-g~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~---~   77 (258)
T d1b0ua_           2 KLHVIDLHKRY-GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL---K   77 (258)
T ss_dssp             CEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSE---E
T ss_pred             eEEEEEEEEEE-CCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhc---c
Confidence            48999999999 6788999999999999999999999999999999999999999999999999874211100000   0


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh----cCCCH----HHHHHHHhhcCCC
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLPY----EKSRRQLGMFGLP  330 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~----~~~~~----~~~~~~L~~~~l~  330 (356)
                      ++++..                ....+.+|||+||++  .+++.+|+.+++...    .+.+.    +.+.++|+.+++.
T Consensus        78 ~~~~~~----------------~~~~r~~ig~vfQ~~--~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~  139 (258)
T d1b0ua_          78 VADKNQ----------------LRLLRTRLTMVFQHF--NLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGID  139 (258)
T ss_dssp             ESCHHH----------------HHHHHHHEEEECSSC--CCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCC
T ss_pred             cccHhH----------------HHHHhcceEEEEech--hhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCc
Confidence            001100                011235799999997  488999999987542    23443    3467789999998


Q ss_pred             CccccCCCCCCChHHHHHHHHHHHc
Q psy2684         331 SYAHTIPIRDLSGGQKARVALAELT  355 (356)
Q Consensus       331 ~~~~~~~~~~LSGGqkqRvalA~~~  355 (356)
                      +....+++.+|||||||||+|||+|
T Consensus       140 ~~~~~~~p~~LSGG~~QRv~iAraL  164 (258)
T d1b0ua_         140 ERAQGKYPVHLSGGQQQRVSIARAL  164 (258)
T ss_dssp             HHHHTSCGGGSCHHHHHHHHHHHHH
T ss_pred             hhhhccCcccccHHHHHHHHHHHHH
Confidence            7554456799999999999999997

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.97  E-value=7.7e-32  Score=240.08  Aligned_cols=146  Identities=22%  Similarity=0.305  Sum_probs=115.3

Q ss_pred             CCCcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeee
Q psy2684         176 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALV  255 (356)
Q Consensus       176 ~~~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialv  255 (356)
                      ++++|+++|+++.| ++..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....      
T Consensus         3 sd~~Lev~~l~k~y-g~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~------   75 (240)
T d1ji0a_           3 SDIVLEVQSLHVYY-GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPA------   75 (240)
T ss_dssp             CSEEEEEEEEEEEE-TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCH------
T ss_pred             cceEEEEeeEEEEE-CCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccH------
Confidence            35689999999999 67889999999999999999999999999999999999999999999999988742100      


Q ss_pred             cCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcC--C-C---HHHHHHHHhhc-C
Q psy2684         256 GPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN--L-P---YEKSRRQLGMF-G  328 (356)
Q Consensus       256 G~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~--~-~---~~~~~~~L~~~-~  328 (356)
                                             .  ...+..++|++|++  .+|+.+|+.|++.....  . .   ...+...+..+ +
T Consensus        76 -----------------------~--~~~r~gi~~~~q~~--~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (240)
T d1ji0a_          76 -----------------------H--VINRMGIALVPEGR--RIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPR  128 (240)
T ss_dssp             -----------------------H--HHHHTTEEEECSSC--CCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHH
T ss_pred             -----------------------H--HHHHhcccccCccc--ccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhC
Confidence                                   0  00123589999986  58999999999764321  1 1   12234456655 5


Q ss_pred             CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         329 LPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       329 l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      +.+..+ +++++|||||||||+|||+++
T Consensus       129 l~~~~~-~~~~~LSGG~~Qrv~iAraL~  155 (240)
T d1ji0a_         129 LKERLK-QLGGTLSGGEQQMLAIGRALM  155 (240)
T ss_dssp             HHTTTT-SBSSSSCHHHHHHHHHHHHHT
T ss_pred             hHHHHh-CchhhCCHHHHHHHHHHHHHH
Confidence            666555 477999999999999999974

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.97  E-value=1.9e-31  Score=237.75  Aligned_cols=143  Identities=27%  Similarity=0.332  Sum_probs=109.7

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      ||+++||+|+|++++.+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++....          
T Consensus         1 mle~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~----------   70 (242)
T d1mv5a_           1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNIS----------   70 (242)
T ss_dssp             CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTS----------
T ss_pred             CEEEEEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEecccc----------
Confidence            5899999999976678999999999999999999999999999999999999999999999998874110          


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh--cCCCHHHHHHHHhhcCCCCcccc-
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL--FNLPYEKSRRQLGMFGLPSYAHT-  335 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~--~~~~~~~~~~~L~~~~l~~~~~~-  335 (356)
                                            ....+.+|||++|++  .+|+. |+.+++...  ........++.++..++...... 
T Consensus        71 ----------------------~~~~r~~i~~v~Q~~--~lf~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (242)
T d1mv5a_          71 ----------------------LENWRSQIGFVSQDS--AIMAG-TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENM  125 (242)
T ss_dssp             ----------------------CSCCTTTCCEECCSS--CCCCE-EHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSS
T ss_pred             ----------------------HHHHHhheEEEcccc--ccCCc-chhhheecccccccchhhHHHHHHHHHhhhhhccC
Confidence                                  111245799999997  36655 899987532  22445555555554444322111 


Q ss_pred             ---------CCCCCCChHHHHHHHHHHHcC
Q psy2684         336 ---------IPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       336 ---------~~~~~LSGGqkqRvalA~~~l  356 (356)
                               .....|||||||||+|||+++
T Consensus       126 ~~~~~~~i~~~g~~LSGGqkQRv~iARal~  155 (242)
T d1mv5a_         126 PDQLNTEVGERGVKISGGQRQRLAIARAFL  155 (242)
T ss_dssp             TTGGGCEESTTSBCCCHHHHHHHHHHHHHH
T ss_pred             cccccccccCCCCCCCHHHHHHHHHHHHHh
Confidence                     123579999999999999974

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.97  E-value=2.2e-31  Score=239.35  Aligned_cols=143  Identities=24%  Similarity=0.291  Sum_probs=117.0

Q ss_pred             CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      .+|+++|++++| ++..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++....         
T Consensus         3 ~iL~v~nlsk~y-g~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~---------   72 (254)
T d1g6ha_           3 EILRTENIVKYF-GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKE---------   72 (254)
T ss_dssp             EEEEEEEEEEEE-TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCC---------
T ss_pred             ceEEEEEEEEEE-CCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchh---------
Confidence            379999999999 6788999999999999999999999999999999999999999999999998874210         


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc---------------C-CC----H
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF---------------N-LP----Y  317 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~---------------~-~~----~  317 (356)
                                       +     ....+..|+|+||++.  +++.+|+.|++....               . ..    .
T Consensus        73 -----------------~-----~~~~~~gi~~v~Q~~~--~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (254)
T d1g6ha_          73 -----------------P-----AELYHYGIVRTFQTPQ--PLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMV  128 (254)
T ss_dssp             -----------------H-----HHHHHHTEEECCCCCG--GGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHH
T ss_pred             -----------------H-----HHHHHhcCCccCCccc--cCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHH
Confidence                             0     0001235999999974  788999999985321               0 11    1


Q ss_pred             HHHHHHHhhcCCCCccccCCCCCCChHHHHHHHHHHHc
Q psy2684         318 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT  355 (356)
Q Consensus       318 ~~~~~~L~~~~l~~~~~~~~~~~LSGGqkqRvalA~~~  355 (356)
                      +.+.++++.+++.+..+ +++.+|||||||||+|||+|
T Consensus       129 ~~~~~~l~~~~l~~~~~-~~~~~LSgG~~Qrv~iAraL  165 (254)
T d1g6ha_         129 EKAFKILEFLKLSHLYD-RKAGELSGGQMKLVEIGRAL  165 (254)
T ss_dssp             HHHHHHHHHTTCGGGTT-SBGGGSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcchhcc-CchhhCCcHHHHHHHHHHHH
Confidence            34667899999987665 47899999999999999987

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=8e-31  Score=233.00  Aligned_cols=140  Identities=21%  Similarity=0.307  Sum_probs=116.7

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG  259 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG  259 (356)
                      +.++|++++| +++.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++....           
T Consensus         3 I~v~nl~k~y-g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~-----------   70 (238)
T d1vpla_           3 VVVKDLRKRI-GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEP-----------   70 (238)
T ss_dssp             EEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCH-----------
T ss_pred             EEEEeEEEEE-CCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccCh-----------
Confidence            7899999999 7788999999999999999999999999999999999999999999999988763110           


Q ss_pred             CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHH---hcCCCHH----HHHHHHhhcCCCCc
Q psy2684         260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK---LFNLPYE----KSRRQLGMFGLPSY  332 (356)
Q Consensus       260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~---~~~~~~~----~~~~~L~~~~l~~~  332 (356)
                                            ...+..+||+||.+  .+++++|+.|++..   .+.....    .++.+++.+++.+.
T Consensus        71 ----------------------~~~~~~i~~vpq~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~  126 (238)
T d1vpla_          71 ----------------------HEVRKLISYLPEEA--GAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEK  126 (238)
T ss_dssp             ----------------------HHHHTTEEEECTTC--CCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGG
T ss_pred             ----------------------HHHHhhEeEeeecc--ccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH
Confidence                                  01124699999986  58899999998743   2344443    35667888999877


Q ss_pred             cccCCCCCCChHHHHHHHHHHHcC
Q psy2684         333 AHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       333 ~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      ... ++.+|||||||||+||++++
T Consensus       127 ~~~-~~~~lSgG~~qrv~iA~al~  149 (238)
T d1vpla_         127 IKD-RVSTYSKGMVRKLLIARALM  149 (238)
T ss_dssp             GGS-BGGGCCHHHHHHHHHHHHHT
T ss_pred             Hhh-hhhhCCHHHHHHHHHHHHHh
Confidence            665 78999999999999999974

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.96  E-value=7.6e-30  Score=225.18  Aligned_cols=135  Identities=30%  Similarity=0.454  Sum_probs=109.5

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG  259 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG  259 (356)
                      +++ ++.++| +... + |+||++. +|+++|+||||||||||+++|+|+++|++|+|.++|.++...            
T Consensus         3 l~v-~~~k~~-g~~~-~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~------------   65 (240)
T d2onka1           3 LKV-RAEKRL-GNFR-L-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPL------------   65 (240)
T ss_dssp             EEE-EEEEEE-TTEE-E-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS------------
T ss_pred             EEE-EEEEEE-CCEE-E-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcC------------
Confidence            566 567888 4433 3 7999995 689999999999999999999999999999999999887410            


Q ss_pred             CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCH----HHHHHHHhhcCCCCccc
Q psy2684         260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPY----EKSRRQLGMFGLPSYAH  334 (356)
Q Consensus       260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~----~~~~~~L~~~~l~~~~~  334 (356)
                                    .+        .+++|||+||++  .+++.+|+.|++.... ..+.    +.+.++++.+|+.+..+
T Consensus        66 --------------~~--------~~r~ig~v~Q~~--~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~  121 (240)
T d2onka1          66 --------------PP--------ERRGIGFVPQDY--ALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLD  121 (240)
T ss_dssp             --------------CT--------TTSCCBCCCSSC--CCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTT
T ss_pred             --------------CH--------HHcCceeeccch--hhcccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcHhhhh
Confidence                          11        135799999997  5899999999986532 2232    45778999999998776


Q ss_pred             cCCCCCCChHHHHHHHHHHHcC
Q psy2684         335 TIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       335 ~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      . ++.+|||||||||+|||+|+
T Consensus       122 ~-~~~~LSGG~kQRvaiAral~  142 (240)
T d2onka1         122 R-KPARLSGGERQRVALARALV  142 (240)
T ss_dssp             C-CGGGSCHHHHHHHHHHHHHT
T ss_pred             C-ChhhCCHHHHHHHHHHHHHh
Confidence            5 67999999999999999974

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.96  E-value=3.4e-29  Score=217.29  Aligned_cols=135  Identities=25%  Similarity=0.378  Sum_probs=111.9

Q ss_pred             cEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         179 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       179 ~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      .|+++|+++.| + +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++..            
T Consensus         2 ~lev~~ls~~y-~-~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~------------   67 (200)
T d1sgwa_           2 KLEIRDLSVGY-D-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK------------   67 (200)
T ss_dssp             EEEEEEEEEES-S-SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG------------
T ss_pred             eEEEEEEEEEe-C-CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhH------------
Confidence            37999999999 3 479999999999999999999999999999999999999999999999877631            


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh---c--CCCHHHHHHHHhhcCCCCcc
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---F--NLPYEKSRRQLGMFGLPSYA  333 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~---~--~~~~~~~~~~L~~~~l~~~~  333 (356)
                                               .+.+++|++|+.  .++...++.+++...   +  .....++.+.++.+++.+..
T Consensus        68 -------------------------~~~~i~~~~~~~--~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  120 (200)
T d1sgwa_          68 -------------------------VKGKIFFLPEEI--IVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLK  120 (200)
T ss_dssp             -------------------------GGGGEEEECSSC--CCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTT
T ss_pred             -------------------------hcCcEEEEeecc--cCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcccc
Confidence                                     124689999986  366778888876432   3  34567778889998886533


Q ss_pred             ccCCCCCCChHHHHHHHHHHHcC
Q psy2684         334 HTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       334 ~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                        +++.+|||||||||+||++++
T Consensus       121 --~~~~~LSgG~~qrv~ia~al~  141 (200)
T d1sgwa_         121 --KKLGELSQGTIRRVQLASTLL  141 (200)
T ss_dssp             --SBGGGSCHHHHHHHHHHHHTT
T ss_pred             --cccCcCCCcHHHHHHHHHHHh
Confidence              357899999999999999975

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=5.8e-30  Score=227.67  Aligned_cols=141  Identities=23%  Similarity=0.387  Sum_probs=107.4

Q ss_pred             EEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         180 LGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       180 l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      ++++||+|+|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++....          
T Consensus         2 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~----------   71 (241)
T d2pmka1           2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD----------   71 (241)
T ss_dssp             EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSC----------
T ss_pred             eEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccc----------
Confidence            6899999999643 46999999999999999999999999999999999999999999999998874110          


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHhhcCC--------
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGL--------  329 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~L~~~~l--------  329 (356)
                                        .    ...+.+|+|++|++  .+| ..|+.+++.... ....+++...++..++        
T Consensus        72 ------------------~----~~lr~~i~~v~Q~~--~lf-~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  126 (241)
T d2pmka1          72 ------------------P----NWLRRQVGVVLQDN--VLL-NRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELR  126 (241)
T ss_dssp             ------------------H----HHHHHHEEEECSSC--CCT-TSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTST
T ss_pred             ------------------h----hhhhceEEEEeccc--ccC-CccccccccccCccccHHHHHHHHHHHhhHHHHHhhh
Confidence                              0    01135799999997  355 469999985432 3455555444433332        


Q ss_pred             ---CCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         330 ---PSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       330 ---~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                         ...... ....|||||||||+|||+++
T Consensus       127 ~~~~t~i~~-~g~~LSGGq~QRvalARal~  155 (241)
T d2pmka1         127 EGYNTIVGE-QGAGLSGGQRQRIAIARALV  155 (241)
T ss_dssp             TGGGSBCST-TTTCCCHHHHHHHHHHHHHT
T ss_pred             cchhhhcCC-CCCccCHHHHHHHhhhhhhh
Confidence               122222 34799999999999999975

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.2e-29  Score=227.22  Aligned_cols=142  Identities=27%  Similarity=0.407  Sum_probs=107.2

Q ss_pred             cEEEecceeeeCCC--ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeec
Q psy2684         179 VLGLHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVG  256 (356)
Q Consensus       179 ~l~~~~l~~~~~~~--~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG  256 (356)
                      .++++||+|+|++.  ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++....        
T Consensus        11 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~--------   82 (251)
T d1jj7a_          11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYE--------   82 (251)
T ss_dssp             CEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBC--------
T ss_pred             eEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhh--------
Confidence            48999999999642  35899999999999999999999999999999999999999999999998874110        


Q ss_pred             CCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc--CCCHHHHH---------HHHh
Q psy2684         257 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF--NLPYEKSR---------RQLG  325 (356)
Q Consensus       257 ~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~--~~~~~~~~---------~~L~  325 (356)
                                              ....+.+++|++|++  .+| ..|+.+++....  ........         +.+.
T Consensus        83 ------------------------~~~~r~~i~~v~Q~~--~lf-~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~  135 (251)
T d1jj7a_          83 ------------------------HRYLHRQVAAVGQEP--QVF-GRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFIS  135 (251)
T ss_dssp             ------------------------HHHHHHHEEEECSSC--CCC-SSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHH
T ss_pred             ------------------------hHHHHHHhhhccccc--ccc-CcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHH
Confidence                                    011235799999997  356 458999986432  22222222         2334


Q ss_pred             hc--CCCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         326 MF--GLPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       326 ~~--~l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .+  ++...... .+.+|||||||||+|||+++
T Consensus       136 ~l~~g~~~~i~~-~~~~LSGGqkQRvaiARal~  167 (251)
T d1jj7a_         136 GLPQGYDTEVDE-AGSQLSGGQRQAVALARALI  167 (251)
T ss_dssp             TSTTGGGCBCCS-SCSSSCHHHHHHHHHHHHHT
T ss_pred             hccccchhhHhc-cCccCChhHceEEEEeeccc
Confidence            33  33443443 45789999999999999975

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.95  E-value=3e-29  Score=224.70  Aligned_cols=142  Identities=28%  Similarity=0.361  Sum_probs=111.1

Q ss_pred             cEEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         179 VLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       179 ~l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      -++++||+|+|+++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++....         
T Consensus        16 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~---------   86 (255)
T d2hyda1          16 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFL---------   86 (255)
T ss_dssp             CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSC---------
T ss_pred             EEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCC---------
Confidence            48999999999654 46999999999999999999999999999999999999999999999998874110         


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHhhcCCCC-----
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPS-----  331 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~-~~~~~~~~~~L~~~~l~~-----  331 (356)
                                         .    ...+.+++|++|++  .+| ..|+.+++.... ....+++.+.++..++..     
T Consensus        87 -------------------~----~~lr~~i~~v~Q~~--~lf-~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~l  140 (255)
T d2hyda1          87 -------------------T----GSLRNQIGLVQQDN--ILF-SDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNL  140 (255)
T ss_dssp             -------------------H----HHHHHTEEEECSSC--CCC-SSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTS
T ss_pred             -------------------H----HHhhheeeeeeccc--cCC-CCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhc
Confidence                               0    01135799999987  355 569999986432 345667777776666532     


Q ss_pred             ------ccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         332 ------YAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       332 ------~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                            .... ....|||||||||+|||+++
T Consensus       141 p~gl~t~i~~-~g~~LSgGq~QRi~iARal~  170 (255)
T d2hyda1         141 PQGYDTEVGE-RGVKLSGGQKQRLSIARIFL  170 (255)
T ss_dssp             TTGGGCBCCG-GGTTSCHHHHHHHHHHHHHH
T ss_pred             cccccchhcC-CCCCcCHHHHHHHHHHHHHh
Confidence                  1222 23679999999999999974

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.95  E-value=4.2e-29  Score=223.91  Aligned_cols=141  Identities=29%  Similarity=0.368  Sum_probs=107.7

Q ss_pred             EEEecceeeeCCC-ccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCC
Q psy2684         180 LGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPN  258 (356)
Q Consensus       180 l~~~~l~~~~~~~-~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~n  258 (356)
                      |+++||+|+|++. .++|+++||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++....          
T Consensus        14 I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~----------   83 (253)
T d3b60a1          14 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYT----------   83 (253)
T ss_dssp             EEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBC----------
T ss_pred             EEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhh----------
Confidence            8999999999654 46999999999999999999999999999999999999999999999998864110          


Q ss_pred             CCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh--cCCCHHHHHHHHhhcC--------
Q psy2684         259 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL--FNLPYEKSRRQLGMFG--------  328 (356)
Q Consensus       259 G~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~--~~~~~~~~~~~L~~~~--------  328 (356)
                                            ....+.+++|++|++.  ++ ..|+.+++...  ...+.+++.+.++..+        
T Consensus        84 ----------------------~~~~r~~i~~v~Q~~~--l~-~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l  138 (253)
T d3b60a1          84 ----------------------LASLRNQVALVSQNVH--LF-NDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKM  138 (253)
T ss_dssp             ----------------------HHHHHHTEEEECSSCC--CC-SSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHS
T ss_pred             ----------------------hhhhhheEEEEeeccc--cC-CcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhc
Confidence                                  0011346999999973  44 45777776543  2345566655544443        


Q ss_pred             ---CCCccccCCCCCCChHHHHHHHHHHHcC
Q psy2684         329 ---LPSYAHTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       329 ---l~~~~~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                         +...... .+..|||||||||+|||+++
T Consensus       139 ~~gl~t~~~~-~~~~LSGGqkQRvaiARal~  168 (253)
T d3b60a1         139 DNGLDTIIGE-NGVLLSGGQRQRIAIARALL  168 (253)
T ss_dssp             TTGGGSBCCT-TSCSSCHHHHHHHHHHHHHH
T ss_pred             cccchhhhcC-CCCCcCHHHHHHHHHHHHHh
Confidence               3333333 34789999999999999974

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.93  E-value=1.9e-26  Score=203.83  Aligned_cols=90  Identities=28%  Similarity=0.369  Sum_probs=80.8

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQ----TWKKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~----~~~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||||||+||+||+.+|+||||||||++||+.++..+.++++    +++.|||+||||++++.++||||++
T Consensus       133 ~~~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~v  212 (240)
T d1g2912         133 LNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAV  212 (240)
T ss_dssp             TTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEE
T ss_pred             hcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEE
Confidence            578999999999999999999999999999999999999999877666554    4589999999999999999999999


Q ss_pred             EeCCeEeEecCCHH
Q psy2684          78 LDMKKLFYYKGNFT   91 (356)
Q Consensus        78 l~~g~~~~~~g~~~   91 (356)
                      |++|+++..+.+.+
T Consensus       213 m~~G~iv~~G~~~e  226 (240)
T d1g2912         213 MNRGVLQQVGSPDE  226 (240)
T ss_dssp             EETTEEEEEECHHH
T ss_pred             EECCEEEEEcCHHH
Confidence            99999998644333

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.93  E-value=2.8e-26  Score=202.43  Aligned_cols=90  Identities=31%  Similarity=0.444  Sum_probs=81.0

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||||||+||+||+.+|+||||||||++|||.++..+.+++++    .+.|||+||||++++..+||||++
T Consensus       130 ~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~v  209 (239)
T d1v43a3         130 LNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAV  209 (239)
T ss_dssp             TTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEE
T ss_pred             hcCChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEE
Confidence            5789999999999999999999999999999999999999998776665554    578999999999999999999999


Q ss_pred             EeCCeEeEecCCHHH
Q psy2684          78 LDMKKLFYYKGNFTL   92 (356)
Q Consensus        78 l~~g~~~~~~g~~~~   92 (356)
                      |++|+|+.. |+.++
T Consensus       210 m~~G~iv~~-G~~~e  223 (239)
T d1v43a3         210 MNRGQLLQI-GSPTE  223 (239)
T ss_dssp             EETTEEEEE-ECHHH
T ss_pred             EECCEEEEE-cCHHH
Confidence            999999975 55443

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.8e-26  Score=202.95  Aligned_cols=92  Identities=29%  Similarity=0.480  Sum_probs=66.4

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQ----TWKKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~----~~~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||||||+||+||+.+|++|||||||++||+.++..+.++++    +.+.|||+||||++++..+||||++
T Consensus       124 ~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~v  203 (232)
T d2awna2         124 LDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVV  203 (232)
T ss_dssp             ----------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEE
T ss_pred             hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            478999999999999999999999999999999999999999877665554    4689999999999999999999999


Q ss_pred             EeCCeEeEecCCHHHH
Q psy2684          78 LDMKKLFYYKGNFTLF   93 (356)
Q Consensus        78 l~~g~~~~~~g~~~~~   93 (356)
                      |++|+++.++...+.|
T Consensus       204 m~~G~iv~~G~~~el~  219 (232)
T d2awna2         204 LDAGRVAQVGKPLELY  219 (232)
T ss_dssp             EETTEEEEEECHHHHH
T ss_pred             EECCEEEEEeCHHHHH
Confidence            9999999764443333

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.93  E-value=3.2e-26  Score=202.28  Aligned_cols=92  Identities=36%  Similarity=0.392  Sum_probs=81.9

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||||||+|||||+++|++|||||||++||+.++..+.+++++    .+.|||+||||++++.++||||++
T Consensus       134 ~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~v  213 (242)
T d1oxxk2         134 LNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGV  213 (242)
T ss_dssp             TTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEE
T ss_pred             hhCChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEE
Confidence            5789999999999999999999999999999999999999998777666544    578999999999999999999999


Q ss_pred             EeCCeEeEecCCHHHH
Q psy2684          78 LDMKKLFYYKGNFTLF   93 (356)
Q Consensus        78 l~~g~~~~~~g~~~~~   93 (356)
                      |++|+|+..+.+.+.|
T Consensus       214 m~~G~iv~~g~~~el~  229 (242)
T d1oxxk2         214 LVKGKLVQVGKPEDLY  229 (242)
T ss_dssp             EETTEEEEEECHHHHH
T ss_pred             EECCEEEEEcCHHHHH
Confidence            9999999865444444

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.93  E-value=6.3e-26  Score=199.41  Aligned_cols=84  Identities=31%  Similarity=0.381  Sum_probs=76.2

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||||||+||+||+.+|+||||||||++||+.++..+.+++++    ++.|||+||||++++ ++||||++
T Consensus       139 ~~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a-~~~drv~~  217 (230)
T d1l2ta_         139 ANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIY  217 (230)
T ss_dssp             TTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHH-TTSSEEEE
T ss_pred             hcCChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHH-HhCCEEEE
Confidence            3678999999999999999999999999999999999999998887766654    478999999999987 68999999


Q ss_pred             EeCCeEeEe
Q psy2684          78 LDMKKLFYY   86 (356)
Q Consensus        78 l~~g~~~~~   86 (356)
                      |++|+|+..
T Consensus       218 m~~G~Iv~~  226 (230)
T d1l2ta_         218 LKDGEVERE  226 (230)
T ss_dssp             EETTEEEEE
T ss_pred             EECCEEEEe
Confidence            999999863

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.92  E-value=8.3e-26  Score=198.15  Aligned_cols=90  Identities=33%  Similarity=0.380  Sum_probs=81.2

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQ----TWKKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~----~~~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++++    +.+.|||+||||++++.++||||++
T Consensus       121 ~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~v  200 (229)
T d3d31a2         121 LDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAV  200 (229)
T ss_dssp             TTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEE
T ss_pred             HhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEE
Confidence            578999999999999999999999999999999999999999887766664    4578999999999999999999999


Q ss_pred             EeCCeEeEecCCHHH
Q psy2684          78 LDMKKLFYYKGNFTL   92 (356)
Q Consensus        78 l~~g~~~~~~g~~~~   92 (356)
                      |++|+++.. |+.++
T Consensus       201 m~~G~iv~~-g~~~e  214 (229)
T d3d31a2         201 VMDGKLIQV-GKPEE  214 (229)
T ss_dssp             ESSSCEEEE-ECHHH
T ss_pred             EECCEEEEE-cCHHH
Confidence            999999975 55544

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=7.1e-26  Score=200.14  Aligned_cols=90  Identities=27%  Similarity=0.392  Sum_probs=80.7

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH----hcCcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQ----TWKKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~----~~~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||||||+||+||+.+|+||||||||++||+.++..+.++|+    +++.|||+||||++++..+||||++
T Consensus       134 ~~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~v  213 (240)
T d3dhwc1         134 HDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAV  213 (240)
T ss_dssp             TSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEE
T ss_pred             hhCChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEE
Confidence            578999999999999999999999999999999999999999877666554    4588999999999999999999999


Q ss_pred             EeCCeEeEecCCHH
Q psy2684          78 LDMKKLFYYKGNFT   91 (356)
Q Consensus        78 l~~g~~~~~~g~~~   91 (356)
                      |++|+++..+...+
T Consensus       214 l~~G~iv~~G~~~e  227 (240)
T d3dhwc1         214 ISNGELIEQDTVSE  227 (240)
T ss_dssp             EETTEEEEEEETTT
T ss_pred             EECCEEEEECCHHH
Confidence            99999997544433

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=9.6e-26  Score=199.57  Aligned_cols=137  Identities=25%  Similarity=0.249  Sum_probs=105.5

Q ss_pred             CcEEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecC
Q psy2684         178 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGP  257 (356)
Q Consensus       178 ~~l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~  257 (356)
                      .+++++|++++|     .|++|||+|++||+++|+||||||||||+++|+|+. |++|+|.++|.++......       
T Consensus         2 ~il~~~dv~~~~-----~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~-------   68 (231)
T d1l7vc_           2 IVMQLQDVAEST-----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSAT-------   68 (231)
T ss_dssp             EEEEEEEECCTT-----TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHH-------
T ss_pred             eEEEEECcccCc-----eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHH-------
Confidence            368999998765     699999999999999999999999999999999975 6899999999876421100       


Q ss_pred             CCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHh-cC-CCHHHHHHHHhhcCCCCcccc
Q psy2684         258 NGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-FN-LPYEKSRRQLGMFGLPSYAHT  335 (356)
Q Consensus       258 nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~-~~-~~~~~~~~~L~~~~l~~~~~~  335 (356)
                                               ......+|++|...  .....++.+++... .. ...+.+.++++.+++.+...+
T Consensus        69 -------------------------~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  121 (231)
T d1l7vc_          69 -------------------------KLALHRAYLSQQQT--PPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGR  121 (231)
T ss_dssp             -------------------------HHHHHEEEECSCCC--CCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTTTS
T ss_pred             -------------------------HHHhhceeeecccc--CCccccHHHHhhhccchhhHHHHHHHHHHhcCCHhHhCc
Confidence                                     01134688888753  23345667665432 22 234567788999999887765


Q ss_pred             CCCCCCChHHHHHHHHHHHc
Q psy2684         336 IPIRDLSGGQKARVALAELT  355 (356)
Q Consensus       336 ~~~~~LSGGqkqRvalA~~~  355 (356)
                       ++.+|||||||||+||+++
T Consensus       122 -~~~~LSgG~~Qrv~iA~al  140 (231)
T d1l7vc_         122 -STNQLSGGEWQRVRLAAVV  140 (231)
T ss_dssp             -BGGGCCHHHHHHHHHHHHH
T ss_pred             -ChhhcCHHHHHHHHHHHHH
Confidence             6799999999999999986

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.92  E-value=2.2e-25  Score=196.47  Aligned_cols=91  Identities=31%  Similarity=0.434  Sum_probs=82.0

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh----cCcEEEEEecChhHHhhhcCEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT----WKKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      .++++.+|||||||||+||+||+.+|++|||||||++||+.++..+.+++++    .+.|||+||||++++.++||||++
T Consensus       120 ~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~v  199 (240)
T d2onka1         120 LDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAV  199 (240)
T ss_dssp             TTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEE
T ss_pred             hhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEE
Confidence            5789999999999999999999999999999999999999998877766654    478999999999999999999999


Q ss_pred             EeCCeEeEecCCHHHH
Q psy2684          78 LDMKKLFYYKGNFTLF   93 (356)
Q Consensus        78 l~~g~~~~~~g~~~~~   93 (356)
                      |++|+++.+ |+.++.
T Consensus       200 m~~G~ii~~-G~~~el  214 (240)
T d2onka1         200 MLNGRIVEK-GKLKEL  214 (240)
T ss_dssp             EETTEEEEE-ECHHHH
T ss_pred             EECCEEEEE-ecHHHH
Confidence            999999875 665443

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.92  E-value=2.4e-25  Score=199.59  Aligned_cols=89  Identities=37%  Similarity=0.497  Sum_probs=80.2

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEEe
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHLD   79 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l~   79 (356)
                      ++++.+|||||+|||+||++|+.+|++|||||||++||+.++..+.++++++   +.|||+||||++++..+||||++|+
T Consensus       144 ~~~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~  223 (258)
T d1b0ua_         144 GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLH  223 (258)
T ss_dssp             TSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEE
T ss_pred             ccCcccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEE
Confidence            5778999999999999999999999999999999999999988777766643   6899999999999999999999999


Q ss_pred             CCeEeEecCCHHH
Q psy2684          80 MKKLFYYKGNFTL   92 (356)
Q Consensus        80 ~g~~~~~~g~~~~   92 (356)
                      +|+|+.. |+.++
T Consensus       224 ~G~iv~~-g~~~e  235 (258)
T d1b0ua_         224 QGKIEEE-GDPEQ  235 (258)
T ss_dssp             TTEEEEE-ECHHH
T ss_pred             CCEEEEE-cCHHH
Confidence            9999975 55544

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.91  E-value=6.2e-25  Score=195.07  Aligned_cols=91  Identities=22%  Similarity=0.261  Sum_probs=82.9

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++++.+|||||||||+||+||+.+|++|||||||++|||.++.++.++++++   +.|||+||||++++.++||||++|
T Consensus       133 ~~~~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl  212 (240)
T d1ji0a_         133 LKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVL  212 (240)
T ss_dssp             TTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEE
T ss_pred             HhCchhhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            47889999999999999999999999999999999999999998887777654   679999999999999999999999


Q ss_pred             eCCeEeEecCCHHHH
Q psy2684          79 DMKKLFYYKGNFTLF   93 (356)
Q Consensus        79 ~~g~~~~~~g~~~~~   93 (356)
                      ++|+++. .|+.++.
T Consensus       213 ~~G~iv~-~g~~~el  226 (240)
T d1ji0a_         213 ETGQIVL-EGKASEL  226 (240)
T ss_dssp             ETTEEEE-EEEHHHH
T ss_pred             ECCEEEE-EcCHHHH
Confidence            9999986 5776654

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=7.9e-26  Score=205.47  Aligned_cols=126  Identities=24%  Similarity=0.350  Sum_probs=93.9

Q ss_pred             EEEecceeeeCCCccccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCC
Q psy2684         180 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNG  259 (356)
Q Consensus       180 l~~~~l~~~~~~~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG  259 (356)
                      ++++|+++   .++++|+|+||+|++||++||+||||||||||+++|+|+++|++|.|.++|                  
T Consensus        39 i~~~~~~~---~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g------------------   97 (281)
T d1r0wa_          39 VSFSHLCL---VGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------------   97 (281)
T ss_dssp             -CHHHHHH---TTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS------------------
T ss_pred             EEEEEcCC---CCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC------------------
Confidence            55666664   456899999999999999999999999999999999999999999998753                  


Q ss_pred             CchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCcCCCCCCCCCHHHHHHHhcCCCHHHHHHHHhhcCC-------CCc
Q psy2684         260 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGL-------PSY  332 (356)
Q Consensus       260 ~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~~~~l~~~~t~~e~~~~~~~~~~~~~~~~L~~~~l-------~~~  332 (356)
                                                 +++|++|++  .+++ .|+.+++...........+..+....+       ...
T Consensus        98 ---------------------------~i~~v~Q~~--~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~  147 (281)
T d1r0wa_          98 ---------------------------RVSFCSQFS--WIMP-GTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQ  147 (281)
T ss_dssp             ---------------------------CEEEECSSC--CCCS-EEHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTG
T ss_pred             ---------------------------EEEEEeccc--cccC-ceeeccccccccccchHHHHHHHHHHhHHHHHhchhh
Confidence                                       489999986  3554 489998854434444444444433332       111


Q ss_pred             c---ccCCCCCCChHHHHHHHHHHHcC
Q psy2684         333 A---HTIPIRDLSGGQKARVALAELTL  356 (356)
Q Consensus       333 ~---~~~~~~~LSGGqkqRvalA~~~l  356 (356)
                      .   ......+|||||||||+|||+++
T Consensus       148 ~~~~~~~~~~~LSgGqkQRv~lARaL~  174 (281)
T d1r0wa_         148 DNTVLGEGGVTLSGGQRARISLARAVY  174 (281)
T ss_dssp             GGCEECTTCTTSCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhccCCCHHHHHHHHHHHHHH
Confidence            1   11234679999999999999974

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.91  E-value=1.6e-24  Score=194.25  Aligned_cols=90  Identities=20%  Similarity=0.249  Sum_probs=80.9

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQT---WKKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~---~~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++++.+|||||||||+||++|+.+|++|||||||++||+.++..+.+++++   -+.|||+||||++++.++||||++|
T Consensus       144 ~~~~~~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm  223 (254)
T d1g6ha_         144 YDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVM  223 (254)
T ss_dssp             TTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEE
T ss_pred             ccCchhhCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEE
Confidence            4688999999999999999999999999999999999999998887776654   4789999999999999999999999


Q ss_pred             eCCeEeEecCCHHH
Q psy2684          79 DMKKLFYYKGNFTL   92 (356)
Q Consensus        79 ~~g~~~~~~g~~~~   92 (356)
                      ++|+++.. |+.++
T Consensus       224 ~~G~iv~~-g~~~e  236 (254)
T d1g6ha_         224 FNGQIIAE-GRGEE  236 (254)
T ss_dssp             ETTEEEEE-EESHH
T ss_pred             eCCEEEEE-ecHHH
Confidence            99999975 55443

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.90  E-value=3.2e-24  Score=191.94  Aligned_cols=89  Identities=27%  Similarity=0.397  Sum_probs=79.8

Q ss_pred             CCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEeCC
Q psy2684           4 KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLDMK   81 (356)
Q Consensus         4 ~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~g   81 (356)
                      +...+||||||||++|||||+.+|+||||||||++||+.+...+.+.|+++  +.|||+||||++.+. .||+|++|++|
T Consensus       148 ~~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~v~vl~~G  226 (253)
T d3b60a1         148 ENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDG  226 (253)
T ss_dssp             TTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETT
T ss_pred             CCCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHH-hCCEEEEEECC
Confidence            456789999999999999999999999999999999999999888888765  689999999999885 69999999999


Q ss_pred             eEeEecCCHHHHH
Q psy2684          82 KLFYYKGNFTLFK   94 (356)
Q Consensus        82 ~~~~~~g~~~~~~   94 (356)
                      +|+.+ |++++..
T Consensus       227 ~Iv~~-G~~~eLl  238 (253)
T d3b60a1         227 IIVER-GTHSELL  238 (253)
T ss_dssp             EEEEE-ECHHHHH
T ss_pred             EEEEE-CCHHHHH
Confidence            99875 7776654

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.9e-24  Score=191.09  Aligned_cols=91  Identities=26%  Similarity=0.443  Sum_probs=80.4

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      ++...+||||||||++|||||+.+|+||||||||++||+.+...+.+.|.++    +.|||+||||++.+. .||||++|
T Consensus       146 ~~~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~-~aDrI~vl  224 (251)
T d1jj7a_         146 DEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVE-QADHILFL  224 (251)
T ss_dssp             CSSCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHH-TCSEEEEE
T ss_pred             hccCccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHH-hCCEEEEE
Confidence            4566789999999999999999999999999999999999998888888653    679999999999885 59999999


Q ss_pred             eCCeEeEecCCHHHHHH
Q psy2684          79 DMKKLFYYKGNFTLFKK   95 (356)
Q Consensus        79 ~~g~~~~~~g~~~~~~~   95 (356)
                      ++|+|+.. |++++..+
T Consensus       225 ~~G~iv~~-Gt~~eLl~  240 (251)
T d1jj7a_         225 EGGAIREG-GTHQQLME  240 (251)
T ss_dssp             ETTEEEEE-ECHHHHHH
T ss_pred             ECCEEEEE-CCHHHHHh
Confidence            99999874 77766543

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=3.7e-24  Score=189.69  Aligned_cols=91  Identities=26%  Similarity=0.376  Sum_probs=82.5

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      .++++.+||||||||++||++|+.+|++|||||||++||+.++..+.++++++   +.|||++|||++++..+||||++|
T Consensus       127 ~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl  206 (238)
T d1vpla_         127 IKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALI  206 (238)
T ss_dssp             GGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEE
T ss_pred             HhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            46789999999999999999999999999999999999999998888777654   689999999999999999999999


Q ss_pred             eCCeEeEecCCHHHH
Q psy2684          79 DMKKLFYYKGNFTLF   93 (356)
Q Consensus        79 ~~g~~~~~~g~~~~~   93 (356)
                      ++|+++. .|+.++.
T Consensus       207 ~~G~iv~-~g~~~el  220 (238)
T d1vpla_         207 HNGTIVE-TGTVEEL  220 (238)
T ss_dssp             ETTEEEE-EEEHHHH
T ss_pred             ECCEEEE-EcCHHHH
Confidence            9999996 4666554

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=6e-24  Score=188.53  Aligned_cols=89  Identities=26%  Similarity=0.415  Sum_probs=79.5

Q ss_pred             CCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEeCC
Q psy2684           4 KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLDMK   81 (356)
Q Consensus         4 ~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~g   81 (356)
                      .....||||||||++|||||+.+|+||||||||++||+.+...+.+.+++.  +.|||+||||++.+. .||+|++|++|
T Consensus       135 ~~g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~i~vl~~G  213 (241)
T d2pmka1         135 EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKG  213 (241)
T ss_dssp             TTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT-TSSEEEEEETT
T ss_pred             CCCCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH-hCCEEEEEECC
Confidence            456899999999999999999999999999999999999999888888764  579999999999885 59999999999


Q ss_pred             eEeEecCCHHHHH
Q psy2684          82 KLFYYKGNFTLFK   94 (356)
Q Consensus        82 ~~~~~~g~~~~~~   94 (356)
                      +|+.+ |++++..
T Consensus       214 ~Iv~~-G~~~ell  225 (241)
T d2pmka1         214 KIVEQ-GKHKELL  225 (241)
T ss_dssp             EEEEE-ECHHHHH
T ss_pred             EEEEE-CCHHHHH
Confidence            99875 7776554

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.89  E-value=7.3e-24  Score=188.34  Aligned_cols=88  Identities=27%  Similarity=0.425  Sum_probs=77.4

Q ss_pred             CCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEeCCeE
Q psy2684           6 TKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLDMKKL   83 (356)
Q Consensus         6 ~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~g~~   83 (356)
                      ..+||||||||++|||||+.+|+||||||||++||+.+...+.+.++++  +.|||+||||++.+.. ||||++|++|+|
T Consensus       137 g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-~D~i~vl~~G~i  215 (242)
T d1mv5a_         137 GVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVD-ADKIYFIEKGQI  215 (242)
T ss_dssp             SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHH-CSEEEEEETTEE
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh-CCEEEEEECCEE
Confidence            4579999999999999999999999999999999999877777777654  6899999999998865 999999999999


Q ss_pred             eEecCCHHHHHH
Q psy2684          84 FYYKGNFTLFKK   95 (356)
Q Consensus        84 ~~~~g~~~~~~~   95 (356)
                      +. .|++++..+
T Consensus       216 v~-~G~~~eLl~  226 (242)
T d1mv5a_         216 TG-SGKHNELVA  226 (242)
T ss_dssp             CC-CSCHHHHHH
T ss_pred             EE-ECCHHHHHh
Confidence            86 577766543

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.88  E-value=3.7e-23  Score=184.74  Aligned_cols=88  Identities=27%  Similarity=0.433  Sum_probs=78.7

Q ss_pred             CCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEEEeCCe
Q psy2684           5 STKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIHLDMKK   82 (356)
Q Consensus         5 ~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~g~   82 (356)
                      ...+||||||||++|||||+.+|+||||||||++||+.+...+.+.+..+  +.|||+||||++.+. .||+|++|++|+
T Consensus       151 ~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~-~~D~ii~l~~G~  229 (255)
T d2hyda1         151 RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT-HADKIVVIENGH  229 (255)
T ss_dssp             GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTT-TCSEEEEEETTE
T ss_pred             CCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCE
Confidence            34679999999999999999999999999999999999999988888765  579999999999885 599999999999


Q ss_pred             EeEecCCHHHHH
Q psy2684          83 LFYYKGNFTLFK   94 (356)
Q Consensus        83 ~~~~~g~~~~~~   94 (356)
                      ++.. |++++..
T Consensus       230 iv~~-G~~~eLl  240 (255)
T d2hyda1         230 IVET-GTHRELI  240 (255)
T ss_dssp             EEEE-ECHHHHH
T ss_pred             EEEE-CCHHHHH
Confidence            9875 7776544

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=1.5e-23  Score=185.35  Aligned_cols=91  Identities=31%  Similarity=0.335  Sum_probs=80.5

Q ss_pred             CCCCCCcCCHHHHHHHHHHHHHcc-------CCCEEEEeCCCCCCCHHHHHHHHHHHHh---cCcEEEEEecChhHHhhh
Q psy2684           2 QEKSTKEFSGGWRIRVSLARALFL-------EPTLLLLDEPTNHLDLNAVIWLDNYLQT---WKKTLLVVSHDQSFLNNI   71 (356)
Q Consensus         2 ~~~~~~~LSgGe~~r~~la~~l~~-------~p~~llLDEPt~~LD~~~~~~l~~~l~~---~~~tvi~vsHd~~~l~~~   71 (356)
                      .++++.+||||||||++||++|++       +|+||||||||++||+.++..+.+++++   -+.|||+||||++++.++
T Consensus       119 ~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~  198 (231)
T d1l7vc_         119 LGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRH  198 (231)
T ss_dssp             TTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHH
T ss_pred             hCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHH
Confidence            467899999999999999999997       7799999999999999998877776664   468999999999999999


Q ss_pred             cCEEEEEeCCeEeEecCCHHHH
Q psy2684          72 CTDIIHLDMKKLFYYKGNFTLF   93 (356)
Q Consensus        72 ~~~i~~l~~g~~~~~~g~~~~~   93 (356)
                      ||||++|++|+++. .|+.++.
T Consensus       199 ~dri~vl~~G~iv~-~G~~~ev  219 (231)
T d1l7vc_         199 AHRAWLLKGGKMLA-SGRREEV  219 (231)
T ss_dssp             CSBCCBEETTEECC-CSBHHHH
T ss_pred             CCEEEEEECCEEEE-ECCHHHH
Confidence            99999999999986 4665543

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=1.3e-22  Score=184.00  Aligned_cols=90  Identities=29%  Similarity=0.448  Sum_probs=77.3

Q ss_pred             CCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH-HHhc--CcEEEEEecChhHHhhhcCEEEEEeC
Q psy2684           4 KSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNY-LQTW--KKTLLVVSHDQSFLNNICTDIIHLDM   80 (356)
Q Consensus         4 ~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~-l~~~--~~tvi~vsHd~~~l~~~~~~i~~l~~   80 (356)
                      +...+||||||||++|||||+.+|+||||||||++||+.+...+.+. +..+  +.|+|+||||++.+ ..||||++|++
T Consensus       154 ~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l-~~aDrI~vl~~  232 (281)
T d1r0wa_         154 EGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHL-RKADKILILHQ  232 (281)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHH-HTCSEEEEEET
T ss_pred             hhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHH-HhCCEEEEEEC
Confidence            34567999999999999999999999999999999999998887654 4433  57999999999887 56999999999


Q ss_pred             CeEeEecCCHHHHHH
Q psy2684          81 KKLFYYKGNFTLFKK   95 (356)
Q Consensus        81 g~~~~~~g~~~~~~~   95 (356)
                      |+++.+ |++++...
T Consensus       233 G~i~~~-Gt~~eL~~  246 (281)
T d1r0wa_         233 GSSYFY-GTFSELQS  246 (281)
T ss_dssp             TEEEEE-ECHHHHHH
T ss_pred             CEEEEE-CCHHHHhc
Confidence            999865 88876643

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.71  E-value=3.6e-18  Score=147.15  Aligned_cols=73  Identities=21%  Similarity=0.271  Sum_probs=58.6

Q ss_pred             CCCCCcCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc----CcEEEEEecChhHHhhhcCEEEEE
Q psy2684           3 EKSTKEFSGGWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW----KKTLLVVSHDQSFLNNICTDIIHL   78 (356)
Q Consensus         3 ~~~~~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~l~~~~~~i~~l   78 (356)
                      ++++.+||||||||++||++|+.+|++|||||||++||+.++..+.+.+.++    +.+||.++||+    ++||++.+|
T Consensus       120 ~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l----~~~D~~~~l  195 (200)
T d1sgwa_         120 KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL----SYCDVNENL  195 (200)
T ss_dssp             TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC----TTSSEEEEG
T ss_pred             ccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechh----hhcchhhhe
Confidence            4678899999999999999999999999999999999999987766655543    33444444543    469998887


Q ss_pred             e
Q psy2684          79 D   79 (356)
Q Consensus        79 ~   79 (356)
                      +
T Consensus       196 ~  196 (200)
T d1sgwa_         196 H  196 (200)
T ss_dssp             G
T ss_pred             e
Confidence            4

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.97  E-value=1e-09  Score=103.17  Aligned_cols=74  Identities=20%  Similarity=0.401  Sum_probs=60.9

Q ss_pred             CCCCcCCHHHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc---CcEEEEEecChhHHhhhcCEEE
Q psy2684           4 KSTKEFSGGWRIRVSLARAL----FLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW---KKTLLVVSHDQSFLNNICTDII   76 (356)
Q Consensus         4 ~~~~~LSgGe~~r~~la~~l----~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~l~~~~~~i~   76 (356)
                      +++..|||||+.+++||-.+    ..++++++||||++|||+..+..+.++|.+.   +.-+|+|||+..++.. ||+++
T Consensus       328 ~~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~-ad~~~  406 (427)
T d1w1wa_         328 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEK-SDALV  406 (427)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTT-CSEEE
T ss_pred             hhhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHh-cccEE
Confidence            46688999999998876543    4567799999999999999999998888754   2459999999998865 78877


Q ss_pred             EE
Q psy2684          77 HL   78 (356)
Q Consensus        77 ~l   78 (356)
                      .+
T Consensus       407 ~V  408 (427)
T d1w1wa_         407 GV  408 (427)
T ss_dssp             EE
T ss_pred             EE
Confidence            66

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.56  E-value=5.9e-09  Score=86.11  Aligned_cols=79  Identities=9%  Similarity=-0.033  Sum_probs=67.0

Q ss_pred             CcCCHHHHHHHHHHHHHccCCCEEEEeCCCCC--CCHHHHHHHHHHHHhcCcEEEEEecChhHHhhhcCEEEEEeCCeEe
Q psy2684           7 KEFSGGWRIRVSLARALFLEPTLLLLDEPTNH--LDLNAVIWLDNYLQTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLF   84 (356)
Q Consensus         7 ~~LSgGe~~r~~la~~l~~~p~~llLDEPt~~--LD~~~~~~l~~~l~~~~~tvi~vsHd~~~l~~~~~~i~~l~~g~~~   84 (356)
                      ..+|+|++++.++++++..+|++|++|||...  .+......|.+.+++.+.+||+++|+.+. ...|++++.+.+|+++
T Consensus        80 ~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il~~~h~~~~-~~~~~~i~~~~~~~i~  158 (178)
T d1ye8a1          80 FEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDV-HPLVKEIRRLPGAVLI  158 (178)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCC-SHHHHHHHTCTTCEEE
T ss_pred             hhhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhccCCCEEEEEEccHHH-HHhhceEEEEeCCEEE
Confidence            35789999999999999999999999997544  45666778888888888999999999765 4678999999999987


Q ss_pred             Ee
Q psy2684          85 YY   86 (356)
Q Consensus        85 ~~   86 (356)
                      ..
T Consensus       159 ~v  160 (178)
T d1ye8a1         159 EL  160 (178)
T ss_dssp             EC
T ss_pred             EE
Confidence            54

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.46  E-value=3.1e-07  Score=82.25  Aligned_cols=77  Identities=18%  Similarity=0.205  Sum_probs=63.0

Q ss_pred             CCCCcCCHHHHHHHHHHHH----HccCCCEEEEeCCCCCCCHHHHHHHHHHHHhc--CcEEEEEecChhHHhhhcCEEEE
Q psy2684           4 KSTKEFSGGWRIRVSLARA----LFLEPTLLLLDEPTNHLDLNAVIWLDNYLQTW--KKTLLVVSHDQSFLNNICTDIIH   77 (356)
Q Consensus         4 ~~~~~LSgGe~~r~~la~~----l~~~p~~llLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~l~~~~~~i~~   77 (356)
                      ..+..+|+||++...++..    ....|.++++|||-+||+|..+..|.++|++.  +.-||++||...+++. +|+++.
T Consensus       215 ~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~-~d~~~~  293 (308)
T d1e69a_         215 QKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEA-ADLLHG  293 (308)
T ss_dssp             CBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGG-CSEEEE
T ss_pred             chhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHh-cccEEE
Confidence            4577899999998777654    45567899999999999999999999988764  3589999999999965 788866


Q ss_pred             E--eCC
Q psy2684          78 L--DMK   81 (356)
Q Consensus        78 l--~~g   81 (356)
                      +  ++|
T Consensus       294 v~~~~g  299 (308)
T d1e69a_         294 VTMVNG  299 (308)
T ss_dssp             EEESSS
T ss_pred             EEEeCC
Confidence            4  444

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.44  E-value=2.2e-08  Score=82.50  Aligned_cols=37  Identities=22%  Similarity=0.347  Sum_probs=33.4

Q ss_pred             eEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF  244 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~  244 (356)
                      +++|+||||||||||+++++|.++|..|.+.+.+.+.
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~   38 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRD   38 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC-
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcch
Confidence            4899999999999999999999999999999887553

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.39  E-value=3e-05  Score=65.97  Aligned_cols=34  Identities=26%  Similarity=0.388  Sum_probs=26.2

Q ss_pred             CCCeEEEEcCCCCCcchhhhhhccccccCCCcee
Q psy2684         205 MESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL  238 (356)
Q Consensus       205 ~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~  238 (356)
                      +|..++++|+||+|||||+|.|.+-.....|.|.
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs  127 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS  127 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence            5788999999999999999999987766666653

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=3.6e-05  Score=62.25  Aligned_cols=36  Identities=28%  Similarity=0.306  Sum_probs=30.2

Q ss_pred             eEEEEcCCCCCcchhhhhhccccccCCCceeEeeec
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN  243 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~  243 (356)
                      .+.|+||+|+|||||++.++..+....+.+.+.+.+
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~   38 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTE   38 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec
Confidence            478999999999999999999998887777655443

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.28  E-value=4.3e-05  Score=61.20  Aligned_cols=32  Identities=28%  Similarity=0.255  Sum_probs=25.7

Q ss_pred             eEEEEcCCCCCcchhhhhhccccccCCCceeE
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGELTPNKGKVLL  239 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~  239 (356)
                      +++|+|++|||||||++.|...+....-++.+
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v   35 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGL   35 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence            68999999999999999998776655444443

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.22  E-value=2e-05  Score=67.36  Aligned_cols=34  Identities=26%  Similarity=0.505  Sum_probs=22.5

Q ss_pred             CCCeEEEEcCCCCCcchhhhhhccccccCCCcee
Q psy2684         205 MESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL  238 (356)
Q Consensus       205 ~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~  238 (356)
                      +|..++++|+||+|||||+|.|.|-.....|.|.
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs  129 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS  129 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence            5778899999999999999999997766666654

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=97.19  E-value=5.3e-06  Score=68.53  Aligned_cols=36  Identities=36%  Similarity=0.438  Sum_probs=28.8

Q ss_pred             cccceeeecCCCeEEEEcCCCCCcchhhhhhcccccc
Q psy2684         196 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP  232 (356)
Q Consensus       196 l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p  232 (356)
                      +.+.+|++.+| ++.|+|||||||||++.+|.-.+.+
T Consensus        15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L~g   50 (222)
T d1qhla_          15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALIP   50 (222)
T ss_dssp             EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHHSC
T ss_pred             EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHhcC
Confidence            55666777665 8899999999999999999765543

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.01  E-value=9.3e-05  Score=60.56  Aligned_cols=25  Identities=36%  Similarity=0.620  Sum_probs=22.5

Q ss_pred             CCeEEEEcCCCCCcchhhhhhcccc
Q psy2684         206 ESRVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       206 ge~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      |.++.|+|||||||||+++.|....
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhC
Confidence            7899999999999999999987654

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.95  E-value=0.00011  Score=59.01  Aligned_cols=30  Identities=20%  Similarity=0.189  Sum_probs=25.2

Q ss_pred             eEEEEcCCCCCcchhhhhhccccccCCCce
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGELTPNKGKV  237 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~~p~~G~i  237 (356)
                      +++|+|++|||||||++.|...+.....++
T Consensus         3 ii~I~G~~gSGKTTli~~l~~~L~~~g~~v   32 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRV   32 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhCCCeE
Confidence            689999999999999999988877654444

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.84  E-value=0.00015  Score=58.21  Aligned_cols=26  Identities=31%  Similarity=0.259  Sum_probs=23.3

Q ss_pred             CCCeEEEEcCCCCCcchhhhhhcccc
Q psy2684         205 MESRVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       205 ~ge~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      .|.++.|.||+||||||+.+.|+..+
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            57889999999999999999998764

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.79  E-value=0.00025  Score=62.57  Aligned_cols=21  Identities=48%  Similarity=0.773  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCcchhhhhhcc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~g  228 (356)
                      +.+|+|||||||||++.+|.-
T Consensus        26 lnvlvG~NgsGKS~iL~Ai~~   46 (308)
T d1e69a_          26 VTAIVGPNGSGKSNIIDAIKW   46 (308)
T ss_dssp             EEEEECCTTTCSTHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            889999999999999998844

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.69  E-value=0.00024  Score=56.94  Aligned_cols=28  Identities=21%  Similarity=0.196  Sum_probs=24.3

Q ss_pred             cCCCeEEEEcCCCCCcchhhhhhccccc
Q psy2684         204 DMESRVALVGPNGIGKSTFLNLLKGELT  231 (356)
Q Consensus       204 ~~ge~~~i~G~nGsGKSTll~~l~gl~~  231 (356)
                      .+|-++.|+|++||||||+.+.|+-.+.
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L~   31 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTLN   31 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4688899999999999999999996653

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.64  E-value=0.00027  Score=56.50  Aligned_cols=27  Identities=26%  Similarity=0.317  Sum_probs=23.7

Q ss_pred             cCCCeEEEEcCCCCCcchhhhhhcccc
Q psy2684         204 DMESRVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       204 ~~ge~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      ..+.++.|.||+||||||+.+.|+..+
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            456789999999999999999998765

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.60  E-value=0.00038  Score=63.91  Aligned_cols=27  Identities=30%  Similarity=0.683  Sum_probs=22.5

Q ss_pred             eeecCCCeEEEEcCCCCCcchhhhhhc
Q psy2684         201 FGLDMESRVALVGPNGIGKSTFLNLLK  227 (356)
Q Consensus       201 l~i~~ge~~~i~G~nGsGKSTll~~l~  227 (356)
                      +++..+.+.+|+|||||||||++.+|.
T Consensus        20 i~f~~~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          20 VGFGESNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred             EeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence            344556689999999999999999874

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.58  E-value=0.00038  Score=55.64  Aligned_cols=27  Identities=22%  Similarity=0.489  Sum_probs=23.5

Q ss_pred             cCCCeEEEEcCCCCCcchhhhhhcccc
Q psy2684         204 DMESRVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       204 ~~ge~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      +++-.+.|.||+||||||+.+.|+-.+
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence            456779999999999999999998754

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.55  E-value=0.00027  Score=56.83  Aligned_cols=23  Identities=35%  Similarity=0.528  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      .++|+||.|||||||.+.|+..+
T Consensus         9 ~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           9 TVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             EEEEECCTTSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999998754

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.54  E-value=0.00032  Score=57.27  Aligned_cols=26  Identities=27%  Similarity=0.340  Sum_probs=22.2

Q ss_pred             eEEEEcCCCCCcchhhhhhccccccC
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGELTPN  233 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~~p~  233 (356)
                      ++||.|++|||||||.+.|.-.+...
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~l~~~   49 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQTLREQ   49 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhccc
Confidence            58999999999999999998765543

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.52  E-value=0.00042  Score=55.79  Aligned_cols=32  Identities=22%  Similarity=0.243  Sum_probs=26.2

Q ss_pred             CeEEEEcCCCCCcchhhhhhccccccCCCcee
Q psy2684         207 SRVALVGPNGIGKSTFLNLLKGELTPNKGKVL  238 (356)
Q Consensus       207 e~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~  238 (356)
                      .+++|.|+.||||||+.+.|+-.+......+.
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~   33 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYK   33 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeE
Confidence            57999999999999999999887765555443

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.51  E-value=0.00043  Score=57.89  Aligned_cols=24  Identities=25%  Similarity=0.415  Sum_probs=21.3

Q ss_pred             CCCeEEEEcCCCCCcchhhhhhcc
Q psy2684         205 MESRVALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       205 ~ge~~~i~G~nGsGKSTll~~l~g  228 (356)
                      +|.++.|+||||+|||||++.|.-
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~   24 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLK   24 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHh
Confidence            488999999999999999987754

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.37  E-value=0.0006  Score=54.37  Aligned_cols=26  Identities=27%  Similarity=0.363  Sum_probs=22.9

Q ss_pred             CCeEEEEcCCCCCcchhhhhhccccc
Q psy2684         206 ESRVALVGPNGIGKSTFLNLLKGELT  231 (356)
Q Consensus       206 ge~~~i~G~nGsGKSTll~~l~gl~~  231 (356)
                      ..++.|.|++||||||+.+.|+..+.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            45788999999999999999998764

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.37  E-value=0.00048  Score=54.07  Aligned_cols=23  Identities=48%  Similarity=0.644  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      .+.|+||+||||||+.+.|+-.+
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            47889999999999999998764

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=96.34  E-value=0.0005  Score=54.70  Aligned_cols=23  Identities=30%  Similarity=0.497  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      .+.|+||+||||||+.+.|+--+
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~l   28 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASKS   28 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            36899999999999999997643

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.28  E-value=0.00065  Score=53.06  Aligned_cols=32  Identities=25%  Similarity=0.333  Sum_probs=22.9

Q ss_pred             CeEEEEcCCCCCcchhhhhhccccccCCCceeEee
Q psy2684         207 SRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK  241 (356)
Q Consensus       207 e~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g  241 (356)
                      .++.|.|++||||||+.+.|..   ...|.+.++.
T Consensus         3 klIii~G~pGsGKTTla~~L~~---~~~~~~~~~~   34 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIA---KNPGFYNINR   34 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH---HSTTEEEECH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH---hCCCCEEech
Confidence            3678999999999999997643   2234555544

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.27  E-value=0.00058  Score=56.05  Aligned_cols=23  Identities=39%  Similarity=0.663  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      .++|+|+.|+|||||++.|.|.-
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~~   47 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCCCHHHHHHHhcCCC
Confidence            48999999999999999999853

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.25  E-value=0.00066  Score=53.83  Aligned_cols=31  Identities=32%  Similarity=0.510  Sum_probs=24.1

Q ss_pred             eEEEEcCCCCCcchhhhhhccccccCCCceeEee
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK  241 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g  241 (356)
                      ++.|.||+||||||+.+.|+..+.   +.+++++
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~   34 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG   34 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC---CCEEEeh
Confidence            588999999999999999987653   3344444

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.00074  Score=56.26  Aligned_cols=23  Identities=22%  Similarity=0.254  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      ++||.|++||||||+.+.|+-.+
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l   26 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLL   26 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999886554

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=96.17  E-value=0.00096  Score=52.84  Aligned_cols=22  Identities=32%  Similarity=0.385  Sum_probs=19.4

Q ss_pred             eeeeecCCCCchhhHHHHHhCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~  272 (356)
                      .++++|++|||||||++.|+..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~   25 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPA   25 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4789999999999999999754

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.14  E-value=0.00092  Score=59.79  Aligned_cols=41  Identities=20%  Similarity=0.389  Sum_probs=33.8

Q ss_pred             eeecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEee
Q psy2684         201 FGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEK  241 (356)
Q Consensus       201 l~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g  241 (356)
                      .-+..+.-+.|.|+.||||||++++|.+.++|..--|.+.+
T Consensus       161 ~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiEd  201 (323)
T d1g6oa_         161 DGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIED  201 (323)
T ss_dssp             HHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEES
T ss_pred             HHHHhCCCEEEEeeccccchHHHHHHhhhcccccceeeccc
Confidence            33566677999999999999999999999988776666654

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.11  E-value=0.00079  Score=54.65  Aligned_cols=23  Identities=39%  Similarity=0.577  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      -+||+|+.++|||||++.|+|-.
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~   25 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAK   25 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEEC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCC
Confidence            37999999999999999998753

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.05  E-value=0.00087  Score=54.80  Aligned_cols=21  Identities=48%  Similarity=0.795  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCcchhhhhhccc
Q psy2684         209 VALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       209 ~~i~G~nGsGKSTll~~l~gl  229 (356)
                      +.|+||+|||||||++.|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            689999999999999988543

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.05  E-value=0.001  Score=53.17  Aligned_cols=25  Identities=32%  Similarity=0.488  Sum_probs=21.8

Q ss_pred             CCeeeeecCCCCchhhHHHHHhCCC
Q psy2684         249 ESRVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       249 ~~~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      -++|+++|+.|+||||+++.|+..+
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            3578999999999999999998654

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.01  E-value=0.00091  Score=53.63  Aligned_cols=24  Identities=29%  Similarity=0.646  Sum_probs=21.0

Q ss_pred             CeEEEEcCCCCCcchhhhhhcccc
Q psy2684         207 SRVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       207 e~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      -+++|+|++|+|||||++.+.+-.
T Consensus        14 ~kI~lvG~~~vGKTsLl~~l~~~~   37 (186)
T d1f6ba_          14 GKLVFLGLDNAGKTTLLHMLKDDR   37 (186)
T ss_dssp             EEEEEEEETTSSHHHHHHHHSCC-
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            368999999999999999998865

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.0005  Score=56.02  Aligned_cols=26  Identities=35%  Similarity=0.339  Sum_probs=22.8

Q ss_pred             CCCeEEEEcCCCCCcchhhhhhcccc
Q psy2684         205 MESRVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       205 ~ge~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      +|-++.|+|++||||||+.+.|+-.+
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l   43 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYL   43 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            46688999999999999999998654

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.00  E-value=0.0028  Score=53.35  Aligned_cols=51  Identities=29%  Similarity=0.485  Sum_probs=33.7

Q ss_pred             EEEEcCCCCCcchhhhhhccccccCCCceeEeeeccccCcCCeeeeecCCCCchhhHHHHHhCCCCCCccee
Q psy2684         209 VALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL  280 (356)
Q Consensus       209 ~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~~~~~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~~  280 (356)
                      +.+--.+|-|...|...+.|                     +..+++|++|+|||||++.|.+......+.+
T Consensus        76 ~~vSa~~~~g~~~L~~~l~~---------------------kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~v  126 (225)
T d1u0la2          76 VKTSAKTGMGIEELKEYLKG---------------------KISTMAGLSGVGKSSLLNAINPGLKLRVSEV  126 (225)
T ss_dssp             EECCTTTCTTHHHHHHHHSS---------------------SEEEEECSTTSSHHHHHHHHSTTCCCC----
T ss_pred             EEeccccchhHhhHHHHhcC---------------------CeEEEECCCCCCHHHHHHhhcchhhhhccCc
Confidence            33444566676666665543                     3457889999999999999998765544444

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=95.99  E-value=0.0011  Score=56.01  Aligned_cols=22  Identities=32%  Similarity=0.410  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCcchhhhhhccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      +++|+|+.|||||||++.|...
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~   23 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRY   23 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Confidence            5899999999999999998643

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.0014  Score=52.31  Aligned_cols=26  Identities=35%  Similarity=0.602  Sum_probs=22.0

Q ss_pred             CeeeeecCCCCchhhHHHHHhCCCCC
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKGELTP  275 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g~~~~  275 (356)
                      +.|.++|++|+||||+++.++..+..
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~~   27 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLKS   27 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHH
Confidence            45788999999999999999876643

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.92  E-value=0.0012  Score=52.78  Aligned_cols=23  Identities=39%  Similarity=0.537  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      .++|+|+.|+|||||++.|+|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998854

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.92  E-value=0.001  Score=53.67  Aligned_cols=22  Identities=32%  Similarity=0.635  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCcchhhhhhccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      .++|+|+.|+|||||++.|.|.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4799999999999999999985

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.89  E-value=0.0011  Score=54.34  Aligned_cols=20  Identities=55%  Similarity=0.772  Sum_probs=17.8

Q ss_pred             EEEEcCCCCCcchhhhhhcc
Q psy2684         209 VALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       209 ~~i~G~nGsGKSTll~~l~g  228 (356)
                      +.|+|||||||||+++.|.-
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67999999999999998754

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.85  E-value=0.0012  Score=51.60  Aligned_cols=23  Identities=30%  Similarity=0.654  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      +++|+|++|+|||||++.+.+-.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~   24 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDR   24 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998853

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.82  E-value=0.0014  Score=52.58  Aligned_cols=22  Identities=50%  Similarity=0.745  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCcchhhhhhccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      +|+|+|..++|||||++.|.|.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4799999999999999999874

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.82  E-value=0.00076  Score=54.78  Aligned_cols=20  Identities=40%  Similarity=0.503  Sum_probs=17.5

Q ss_pred             eeeeecCCCCchhhHHHHHh
Q psy2684         251 RVALVGPNGIGKSTFLNLLK  270 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~  270 (356)
                      ...++|+|||||||++.+|.
T Consensus        26 ~tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            55778999999999999885

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.81  E-value=0.0014  Score=52.75  Aligned_cols=23  Identities=52%  Similarity=0.626  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      +++|+|..|+|||||++.|.|..
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~~   29 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGVK   29 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999853

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.0015  Score=53.06  Aligned_cols=22  Identities=27%  Similarity=0.552  Sum_probs=19.4

Q ss_pred             CeEEEEcCCCCCcchhhhhhcc
Q psy2684         207 SRVALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       207 e~~~i~G~nGsGKSTll~~l~g  228 (356)
                      ..+.|+||||+||+||++.|..
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998764

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=95.75  E-value=0.0015  Score=52.37  Aligned_cols=23  Identities=39%  Similarity=0.527  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      .++|+|+.++|||||++.|.+..
T Consensus        18 ~I~lvG~~NvGKSSL~n~L~~~~   40 (188)
T d1puia_          18 EVAFAGRSNAGKSSALNTLTNQK   40 (188)
T ss_dssp             EEEEEECTTSSHHHHHTTTCCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999999864

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=95.75  E-value=0.0014  Score=51.21  Aligned_cols=23  Identities=39%  Similarity=0.486  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      ++.|+|+.|+|||||++.+.+-.
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~~   24 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLGE   24 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999987644

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.73  E-value=0.0014  Score=53.51  Aligned_cols=25  Identities=24%  Similarity=0.296  Sum_probs=21.2

Q ss_pred             CCeEEEEcCCCCCcchhhhhhcccc
Q psy2684         206 ESRVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       206 ge~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      .-++.|+||.||||||+.+.|+--+
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3478999999999999999887643

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=95.73  E-value=0.0018  Score=52.67  Aligned_cols=33  Identities=30%  Similarity=0.348  Sum_probs=25.8

Q ss_pred             cCCCeEEEEcCCCCCcchhhhhhc---cccccCCCc
Q psy2684         204 DMESRVALVGPNGIGKSTFLNLLK---GELTPNKGK  236 (356)
Q Consensus       204 ~~ge~~~i~G~nGsGKSTll~~l~---gl~~p~~G~  236 (356)
                      ++|=++.|+||.||||||+.+.|+   |+...+.|.
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~~~g~~~i~~gd   36 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGD   36 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHH
Confidence            367788999999999999999999   544444443

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=95.69  E-value=0.0015  Score=51.91  Aligned_cols=22  Identities=36%  Similarity=0.566  Sum_probs=19.9

Q ss_pred             EEEEcCCCCCcchhhhhhcccc
Q psy2684         209 VALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       209 ~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      +.|+|++||||||+.+.|+..+
T Consensus         3 I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6789999999999999998765

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=95.68  E-value=0.0015  Score=51.33  Aligned_cols=23  Identities=35%  Similarity=0.541  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      +++|+|.+|+|||||++.+.+-.
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~~~   29 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQVGE   29 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999887754

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.66  E-value=0.0015  Score=53.44  Aligned_cols=26  Identities=27%  Similarity=0.295  Sum_probs=22.5

Q ss_pred             CCCeEEEEcCCCCCcchhhhhhcccc
Q psy2684         205 MESRVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       205 ~ge~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      +-.++.|+||.||||||+.+.|+.-+
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            34469999999999999999998765

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.65  E-value=0.0016  Score=53.63  Aligned_cols=22  Identities=32%  Similarity=0.720  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCcchhhhhhccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      .++|+|+.|||||||++.|.+-
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999875

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=95.62  E-value=0.0016  Score=51.22  Aligned_cols=23  Identities=39%  Similarity=0.629  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      .++|+|+.++|||||++.|.|.-
T Consensus         3 kI~lvG~~nvGKSsLin~l~~~~   25 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAGRE   25 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998763

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=95.62  E-value=0.0018  Score=51.89  Aligned_cols=23  Identities=30%  Similarity=0.404  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      .+.|+|++||||||+.+.|+-.+
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~L   26 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARAL   26 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            46789999999999999997543

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.61  E-value=0.0014  Score=52.92  Aligned_cols=22  Identities=36%  Similarity=0.478  Sum_probs=20.3

Q ss_pred             EEEEcCCCCCcchhhhhhcccc
Q psy2684         209 VALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       209 ~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      +||+|..++|||||++.|.|..
T Consensus         4 VaivG~~nvGKSTLin~L~~~~   25 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRAH   25 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7999999999999999998853

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.57  E-value=0.002  Score=52.05  Aligned_cols=22  Identities=41%  Similarity=0.703  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCcchhhhhhccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      .++|+|+.|+|||||++.|.|.
T Consensus        10 kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            5899999999999999999874

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.57  E-value=0.0023  Score=52.31  Aligned_cols=26  Identities=19%  Similarity=0.248  Sum_probs=23.2

Q ss_pred             ecCCCeEEEEcCCCCCcchhhhhhcc
Q psy2684         203 LDMESRVALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       203 i~~ge~~~i~G~nGsGKSTll~~l~g  228 (356)
                      +.+|+++.|.||+|+|||||+..++.
T Consensus        20 i~~G~v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          20 IETGSITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence            78999999999999999999876654

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.54  E-value=0.003  Score=53.61  Aligned_cols=27  Identities=30%  Similarity=0.448  Sum_probs=21.2

Q ss_pred             eeecC-CCeEEEEcCCCCCcchhhhhhc
Q psy2684         201 FGLDM-ESRVALVGPNGIGKSTFLNLLK  227 (356)
Q Consensus       201 l~i~~-ge~~~i~G~nGsGKSTll~~l~  227 (356)
                      +.+.+ +.++.|.|||.+||||++|.++
T Consensus        35 i~l~~~~~~~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          35 LNLSPQRRMLIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEECSSSCEEEEECCTTSSHHHHHHHHH
T ss_pred             EEECCCceEEEEeccCchhhHHHHHHHH
Confidence            34433 4578999999999999999764

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.52  E-value=0.003  Score=50.06  Aligned_cols=25  Identities=32%  Similarity=0.316  Sum_probs=21.3

Q ss_pred             CCeeeeecCCCCchhhHHHHHhCCC
Q psy2684         249 ESRVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       249 ~~~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      ++.|.+.|+.||||||+.+.++..+
T Consensus         4 g~iI~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4567888999999999999998754

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.52  E-value=0.0019  Score=51.46  Aligned_cols=23  Identities=43%  Similarity=0.497  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      .+.|+|+.||||||+.+.|+..+
T Consensus         3 ~IvliG~~G~GKSTig~~La~~l   25 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAKAL   25 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHHh
Confidence            46788999999999999998765

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.51  E-value=0.0017  Score=53.19  Aligned_cols=28  Identities=25%  Similarity=0.294  Sum_probs=24.3

Q ss_pred             ecCCCeEEEEcCCCCCcchhhhhhcccc
Q psy2684         203 LDMESRVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       203 i~~ge~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      +..+.++.|+||.||||||+.+.|+--+
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4567889999999999999999997654

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=95.50  E-value=0.0031  Score=49.85  Aligned_cols=24  Identities=33%  Similarity=0.591  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCCcchhhhhhccccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGELT  231 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~~  231 (356)
                      +++|+|+.|+|||||++.+.+-..
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~~~   27 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGEDV   27 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCC
Confidence            478999999999999999988643

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.47  E-value=0.003  Score=50.11  Aligned_cols=24  Identities=21%  Similarity=0.221  Sum_probs=20.0

Q ss_pred             eeeeecCCCCchhhHHHHHhCCCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGELT  274 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~~  274 (356)
                      .++++|.+|||||||+..++..+.
T Consensus         3 ii~I~G~~gSGKTTli~~l~~~L~   26 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWVAAAV   26 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            468999999999999988876543

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.47  E-value=0.0019  Score=52.64  Aligned_cols=23  Identities=30%  Similarity=0.458  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      ++.|+||.||||||+.+.|+--+
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999997654

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=95.47  E-value=0.0031  Score=49.05  Aligned_cols=24  Identities=46%  Similarity=0.614  Sum_probs=20.3

Q ss_pred             CeeeeecCCCCchhhHHHHHhCCC
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      +.|.++|+.||||||+.+.|+..+
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            357788999999999999998654

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.47  E-value=0.0032  Score=50.90  Aligned_cols=25  Identities=36%  Similarity=0.620  Sum_probs=21.1

Q ss_pred             CCeeeeecCCCCchhhHHHHHhCCC
Q psy2684         249 ESRVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       249 ~~~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      |..+.++||+||||||+++.+....
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhC
Confidence            4567899999999999999987654

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.41  E-value=0.0028  Score=51.65  Aligned_cols=23  Identities=35%  Similarity=0.475  Sum_probs=21.2

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      +++|-|+.||||||+++.|...+
T Consensus        11 ~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1          11 TVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             EEEEECSTTSCHHHHHHTTGGGT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            79999999999999999998765

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=95.40  E-value=0.0023  Score=52.12  Aligned_cols=21  Identities=38%  Similarity=0.570  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCcchhhhhhcc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~g  228 (356)
                      ++||.|+.||||||+.+.|.-
T Consensus         5 IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998864

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.40  E-value=0.0024  Score=51.26  Aligned_cols=23  Identities=26%  Similarity=0.382  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      ++.|+||.||||||+.+.|+--+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999996654

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=95.39  E-value=0.0031  Score=52.44  Aligned_cols=35  Identities=31%  Similarity=0.361  Sum_probs=26.0

Q ss_pred             CCCeEEEEcCCCCCcchhhhhhccccccCCCceeE
Q psy2684         205 MESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL  239 (356)
Q Consensus       205 ~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~  239 (356)
                      ++.+++++||+|+||||.+-=|+-.+.-..-+|.+
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~l   39 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMF   39 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence            46789999999999999987777665543334444

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=95.39  E-value=0.0039  Score=49.36  Aligned_cols=26  Identities=23%  Similarity=0.516  Sum_probs=22.1

Q ss_pred             cCCeeeeecCCCCchhhHHHHHhCCC
Q psy2684         248 MESRVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       248 ~~~~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      .+-.|.+.|+.||||||+.+.|+..+
T Consensus         4 k~~~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           4 KGINILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence            45678899999999999999997654

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=95.36  E-value=0.0023  Score=51.43  Aligned_cols=24  Identities=38%  Similarity=0.415  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCCcchhhhhhccccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGELT  231 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~~  231 (356)
                      ++.|.|++||||||+.+.|+..+.
T Consensus         3 iivi~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            567889999999999999987764

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=95.34  E-value=0.003  Score=53.25  Aligned_cols=27  Identities=37%  Similarity=0.562  Sum_probs=21.4

Q ss_pred             eeeecCCCeEEEEcCCCCCcchhhhhhc
Q psy2684         200 NFGLDMESRVALVGPNGIGKSTFLNLLK  227 (356)
Q Consensus       200 sl~i~~ge~~~i~G~nGsGKSTll~~l~  227 (356)
                      |+.+. ++++.|.|||.+||||++|.++
T Consensus        30 di~~~-~~~~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          30 DLEMA-HELVLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEES-SCEEEEESCSSSSHHHHHHHHH
T ss_pred             eEEeC-CcEEEEECCCccccchhhhhhH
Confidence            34443 3589999999999999999664

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.0027  Score=51.75  Aligned_cols=23  Identities=26%  Similarity=0.294  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      ++.|+||.||||||..+.|+--+
T Consensus         3 iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57999999999999999887644

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.31  E-value=0.0038  Score=57.36  Aligned_cols=22  Identities=50%  Similarity=0.773  Sum_probs=20.5

Q ss_pred             EEEEcCCCCCcchhhhhhcccc
Q psy2684         209 VALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       209 ~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      ++|+|.+|+|||||+|.|.|..
T Consensus        59 Iai~G~~n~GKSSLiNaL~G~~   80 (400)
T d1tq4a_          59 VAVTGETGSGKSSFINTLRGIG   80 (400)
T ss_dssp             EEEEECTTSSHHHHHHHHHTCC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7999999999999999999854

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.30  E-value=0.0035  Score=50.46  Aligned_cols=36  Identities=31%  Similarity=0.297  Sum_probs=26.4

Q ss_pred             cCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeec
Q psy2684         204 DMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVN  243 (356)
Q Consensus       204 ~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~  243 (356)
                      +.-..+.++|++||||||+.+.+.-.    .|.+.++..+
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~----~~~~~i~~D~   47 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVS----AGYVHVNRDT   47 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGG----GTCEEEEHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHh----cCCEEEchHH
Confidence            34568999999999999999877542    3456666543

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=95.25  E-value=0.0035  Score=49.33  Aligned_cols=24  Identities=38%  Similarity=0.578  Sum_probs=20.5

Q ss_pred             CeeeeecCCCCchhhHHHHHhCCC
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      ..|.+.|+.||||||+++.|+..+
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~   26 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQL   26 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc
Confidence            457888999999999999998654

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=95.23  E-value=0.0025  Score=56.94  Aligned_cols=27  Identities=37%  Similarity=0.513  Sum_probs=22.4

Q ss_pred             CeEEEEcCCCCCcchhhhhhccccccC
Q psy2684         207 SRVALVGPNGIGKSTFLNLLKGELTPN  233 (356)
Q Consensus       207 e~~~i~G~nGsGKSTll~~l~gl~~p~  233 (356)
                      -++||+||.|||||||++.|...+...
T Consensus        55 ~~IgitG~pGaGKSTLi~~l~~~~~~~   81 (327)
T d2p67a1          55 LRLGVTGTPGAGKSTFLEAFGMLLIRE   81 (327)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred             eEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence            368999999999999999998655433

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.17  E-value=0.0031  Score=52.41  Aligned_cols=23  Identities=30%  Similarity=0.615  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      +++|-||.||||||..+.|+--+
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~l   27 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDF   27 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47888999999999999998754

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.16  E-value=0.0012  Score=51.90  Aligned_cols=23  Identities=48%  Similarity=0.655  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      .++|+|..++|||||++.|.|..
T Consensus         2 kI~liG~~n~GKSSLin~l~g~~   24 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNED   24 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47999999999999999998853

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=95.16  E-value=0.0032  Score=50.81  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      ++.|+||.||||||+.+.|+--+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998765

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.13  E-value=0.0032  Score=55.00  Aligned_cols=37  Identities=24%  Similarity=0.329  Sum_probs=24.3

Q ss_pred             eEEEEcCCCCCcchhhhhhccccccCCCc-eeEeeecc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGELTPNKGK-VLLEKVNF  244 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~~p~~G~-i~~~g~~~  244 (356)
                      ++||.|+|||||||+.+.|...+....-+ +.+.+-++
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsf   43 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF   43 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCC
Confidence            79999999999999999888776543322 34554444

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.11  E-value=0.0046  Score=47.89  Aligned_cols=22  Identities=27%  Similarity=0.359  Sum_probs=18.2

Q ss_pred             CeeeeecCCCCchhhHHHHHhC
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g  271 (356)
                      +.|.+.|+.||||||+++.|..
T Consensus         3 klIii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3567889999999999997753

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=95.07  E-value=0.0038  Score=52.06  Aligned_cols=33  Identities=30%  Similarity=0.497  Sum_probs=24.3

Q ss_pred             CeEEEEcCCCCCcchhhhhhccccccCCCceeE
Q psy2684         207 SRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL  239 (356)
Q Consensus       207 e~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~  239 (356)
                      .+++++||+|+||||.+-=|+-.+.-..-+|.+
T Consensus        10 ~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~l   42 (211)
T d2qy9a2          10 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVML   42 (211)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence            478999999999999988777666533334444

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=95.06  E-value=0.0046  Score=48.74  Aligned_cols=22  Identities=32%  Similarity=0.551  Sum_probs=19.0

Q ss_pred             eeeeecCCCCchhhHHHHHhCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~  272 (356)
                      .|.++|+.||||||+.+.|+..
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5778899999999999999653

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=95.06  E-value=0.0034  Score=49.98  Aligned_cols=22  Identities=32%  Similarity=0.499  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCcchhhhhhccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      +++|+|..|||||||++.+.+-
T Consensus        17 kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          17 KVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999998875

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.03  E-value=0.005  Score=48.60  Aligned_cols=25  Identities=28%  Similarity=0.377  Sum_probs=20.7

Q ss_pred             CCeeeeecCCCCchhhHHHHHhCCC
Q psy2684         249 ESRVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       249 ~~~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      ...+.+.|++||||||+.+.|+..+
T Consensus         6 ~~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           6 HHIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3456788999999999999998654

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.01  E-value=0.0037  Score=51.24  Aligned_cols=24  Identities=25%  Similarity=0.288  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCCcchhhhhhccccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGELT  231 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~~  231 (356)
                      ++.++|.+||||||+.+.|+..+.
T Consensus         4 li~l~GlpgsGKSTla~~L~~~l~   27 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTRYLN   27 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            578999999999999999986553

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=94.99  E-value=0.0037  Score=51.68  Aligned_cols=23  Identities=30%  Similarity=0.593  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      +++|.||.||||||+.+.|+.-+
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~   27 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEAL   27 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            78999999999999999998654

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=94.97  E-value=0.006  Score=48.10  Aligned_cols=26  Identities=27%  Similarity=0.363  Sum_probs=21.7

Q ss_pred             CCeeeeecCCCCchhhHHHHHhCCCC
Q psy2684         249 ESRVALVGPNGIGKSTFLNLLKGELT  274 (356)
Q Consensus       249 ~~~ialvG~nG~GKsTll~~l~g~~~  274 (356)
                      .+.|.+.|+.||||||+.+.|+..+.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            34577889999999999999988654

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.95  E-value=0.0042  Score=49.47  Aligned_cols=25  Identities=28%  Similarity=0.619  Sum_probs=21.4

Q ss_pred             CCeeeeecCCCCchhhHHHHHhCCC
Q psy2684         249 ESRVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       249 ~~~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      .-++++||+.|+|||||++.+.+..
T Consensus        13 ~~kI~lvG~~~vGKTsLl~~l~~~~   37 (186)
T d1f6ba_          13 TGKLVFLGLDNAGKTTLLHMLKDDR   37 (186)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4478999999999999999998854

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.94  E-value=0.0037  Score=53.74  Aligned_cols=22  Identities=36%  Similarity=0.680  Sum_probs=20.5

Q ss_pred             EEEEcCCCCCcchhhhhhcccc
Q psy2684         209 VALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       209 ~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      ++|+|.+|+|||||+|.|.|..
T Consensus        35 I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          35 ILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEECCCCCcHHHHHHHHhCCC
Confidence            7999999999999999999864

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.93  E-value=0.0057  Score=48.67  Aligned_cols=24  Identities=29%  Similarity=0.416  Sum_probs=20.2

Q ss_pred             CeeeeecCCCCchhhHHHHHhCCC
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      +.|++.|+.||||||+.+.|+..+
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l   25 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNL   25 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            457889999999999999887543

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.92  E-value=0.0038  Score=53.28  Aligned_cols=24  Identities=25%  Similarity=0.315  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCCcchhhhhhccccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGELT  231 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~~  231 (356)
                      .+.+.||.|||||||.+.|++.+.
T Consensus        34 ~ilL~GpPGtGKT~la~~la~~~~   57 (273)
T d1gvnb_          34 AFLLGGQPGSGKTSLRSAIFEETQ   57 (273)
T ss_dssp             EEEEECCTTSCTHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            378999999999999999998764

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.89  E-value=0.0039  Score=50.08  Aligned_cols=23  Identities=26%  Similarity=0.408  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      ++.|+||.||||||..+.|+--+
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999997544

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=94.87  E-value=0.0044  Score=51.20  Aligned_cols=21  Identities=43%  Similarity=0.574  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCCcchhhhhhcc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~g  228 (356)
                      ++||+|+.||||||+.+.+.-
T Consensus         4 iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998853

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=94.85  E-value=0.0053  Score=49.94  Aligned_cols=23  Identities=39%  Similarity=0.699  Sum_probs=21.2

Q ss_pred             CeeeeecCCCCchhhHHHHHhCC
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g~  272 (356)
                      -+|+++|+.|+|||||++.|.|.
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHhcCC
Confidence            36999999999999999999985

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.83  E-value=0.005  Score=51.62  Aligned_cols=26  Identities=35%  Similarity=0.507  Sum_probs=23.0

Q ss_pred             CCeEEEEcCCCCCcchhhhhhccccc
Q psy2684         206 ESRVALVGPNGIGKSTFLNLLKGELT  231 (356)
Q Consensus       206 ge~~~i~G~nGsGKSTll~~l~gl~~  231 (356)
                      +.+++|-|+-||||||+++.|+..+.
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            45799999999999999999998763

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=94.82  E-value=0.0044  Score=51.72  Aligned_cols=35  Identities=29%  Similarity=0.307  Sum_probs=24.3

Q ss_pred             CCCeEEEEcCCCCCcchhhhhhccccccCCCceeE
Q psy2684         205 MESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL  239 (356)
Q Consensus       205 ~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~  239 (356)
                      +--+++++||+|+||||.+-=|+-.+.-..-+|.+
T Consensus        10 ~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~l   44 (213)
T d1vmaa2          10 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVL   44 (213)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEE
Confidence            44478999999999999877666555433334444

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.80  E-value=0.0052  Score=47.68  Aligned_cols=22  Identities=32%  Similarity=0.717  Sum_probs=20.0

Q ss_pred             eeeeecCCCCchhhHHHHHhCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~  272 (356)
                      +++++|+.++|||||++.+.+.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6889999999999999999874

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.78  E-value=0.0047  Score=49.69  Aligned_cols=23  Identities=48%  Similarity=0.644  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      .+.|+||.||||||+.+.|+--+
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999997554

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=94.76  E-value=0.0034  Score=55.46  Aligned_cols=24  Identities=29%  Similarity=0.487  Sum_probs=21.9

Q ss_pred             eEEEEcCCCCCcchhhhhhccccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGELT  231 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~~  231 (356)
                      ++||.|++||||||+.+.|..++.
T Consensus        82 iIGIaG~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          82 IISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCCCcHHHHHHHHHHh
Confidence            689999999999999999988775

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=94.76  E-value=0.0044  Score=49.00  Aligned_cols=22  Identities=36%  Similarity=0.600  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCcchhhhhhccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      .++++|++|+|||||++.+.+-
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999977653

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=94.76  E-value=0.0054  Score=47.96  Aligned_cols=24  Identities=33%  Similarity=0.499  Sum_probs=20.9

Q ss_pred             CeeeeecCCCCchhhHHHHHhCCC
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      -+++++|..|+|||||++.+.+..
T Consensus         6 ~kI~ivG~~~vGKSSLi~~~~~~~   29 (169)
T d1upta_           6 MRILILGLDGAGKTTILYRLQVGE   29 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            368999999999999999987753

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=94.73  E-value=0.0067  Score=48.73  Aligned_cols=23  Identities=39%  Similarity=0.647  Sum_probs=20.9

Q ss_pred             CeeeeecCCCCchhhHHHHHhCC
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g~  272 (356)
                      =+||++|..|+|||||++.++|.
T Consensus         9 ~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           9 IKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Confidence            36899999999999999999875

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.69  E-value=0.0058  Score=49.27  Aligned_cols=22  Identities=27%  Similarity=0.341  Sum_probs=18.9

Q ss_pred             eeeeecCCCCchhhHHHHHhCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~  272 (356)
                      .||+.|+.||||||+.+.|...
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~   45 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQT   45 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4788899999999999988753

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=94.67  E-value=0.0069  Score=47.82  Aligned_cols=25  Identities=24%  Similarity=0.226  Sum_probs=20.2

Q ss_pred             CCeeeeecCCCCchhhHHHHHhCCC
Q psy2684         249 ESRVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       249 ~~~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      +..|.++|+.||||||+.+.|+..+
T Consensus         6 g~~I~l~G~~GsGKTTia~~La~~L   30 (183)
T d1m8pa3           6 GFTIFLTGYMNSGKDAIARALQVTL   30 (183)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3446688999999999999998543

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.65  E-value=0.0065  Score=48.43  Aligned_cols=21  Identities=38%  Similarity=0.702  Sum_probs=17.8

Q ss_pred             eeeeecCCCCchhhHHHHHhC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g  271 (356)
                      ++.++|+.|+|||||++.+..
T Consensus         8 KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            477889999999999977654

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=94.57  E-value=0.0032  Score=53.15  Aligned_cols=31  Identities=32%  Similarity=0.580  Sum_probs=19.4

Q ss_pred             CeeeeecCCCCchhhHHHHHhCCCCCCccee
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKGELTPNKGEL  280 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g~~~~~~g~~  280 (356)
                      ....++|++|+|||||++.|.+......+.+
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~v  128 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISPELGLRTNEI  128 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC---------
T ss_pred             ceEEEECCCCccHHHHHHhhccHhHhhhccc
Confidence            3456789999999999999999765544444

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=94.57  E-value=0.0058  Score=48.66  Aligned_cols=22  Identities=41%  Similarity=0.684  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCcchhhhhhccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      .++|+|+.|+|||||++.+.+-
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4799999999999999988763

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=94.56  E-value=0.0056  Score=49.89  Aligned_cols=24  Identities=29%  Similarity=0.472  Sum_probs=20.8

Q ss_pred             CeEEEEcCCCCCcchhhhhhcccc
Q psy2684         207 SRVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       207 e~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      =++.|+||.||||||+.+.|+--+
T Consensus         7 mrIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           7 LRAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred             eeEEEECCCCCCHHHHHHHHHHHH
Confidence            368899999999999999998654

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.53  E-value=0.0058  Score=49.15  Aligned_cols=23  Identities=39%  Similarity=0.648  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      ++.|+||.||||||+.+.|+-.+
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47799999999999999998754

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.52  E-value=0.0049  Score=50.66  Aligned_cols=22  Identities=27%  Similarity=0.265  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCcchhhhhhccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      .++|+|+.|+|||||++.+.+-
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999998764

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=94.51  E-value=0.0052  Score=49.47  Aligned_cols=21  Identities=24%  Similarity=0.362  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCcchhhhhhccc
Q psy2684         209 VALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       209 ~~i~G~nGsGKSTll~~l~gl  229 (356)
                      +||+|+..||||||++.|.+.
T Consensus         8 IaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEeCCCCcHHHHHHHHHHh
Confidence            799999999999999999874

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.49  E-value=0.0054  Score=48.83  Aligned_cols=21  Identities=24%  Similarity=0.662  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCCcchhhhhhcc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~g  228 (356)
                      +++|+|+.|+|||||++.+.+
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            378999999999999998775

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=94.43  E-value=0.0085  Score=47.32  Aligned_cols=23  Identities=35%  Similarity=0.546  Sum_probs=19.6

Q ss_pred             eeeeecCCCCchhhHHHHHhCCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      .|.++|+.||||||+.+.++..+
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHHh
Confidence            47788999999999999997643

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=94.42  E-value=0.0065  Score=50.58  Aligned_cols=34  Identities=32%  Similarity=0.209  Sum_probs=20.5

Q ss_pred             CCeEEEEcCCCCCcchhhhhhccccccCCCceeE
Q psy2684         206 ESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL  239 (356)
Q Consensus       206 ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~  239 (356)
                      ..++.++||+|+||||.+-=|+-.+.-...+|.+
T Consensus        12 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~l   45 (211)
T d1j8yf2          12 PYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGL   45 (211)
T ss_dssp             SEEEEEECSCCC----HHHHHHHHHHHTTCCEEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEE
Confidence            3468999999999999977777665543344544

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.40  E-value=0.0081  Score=48.67  Aligned_cols=22  Identities=45%  Similarity=0.759  Sum_probs=18.9

Q ss_pred             eeeecCCCCchhhHHHHHhCCC
Q psy2684         252 VALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       252 ialvG~nG~GKsTll~~l~g~~  273 (356)
                      |.++||+||||||+++.++...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            6789999999999999886543

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=94.39  E-value=0.0074  Score=46.75  Aligned_cols=22  Identities=41%  Similarity=0.551  Sum_probs=19.5

Q ss_pred             eeeeecCCCCchhhHHHHHhCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~  272 (356)
                      +|.++|+.|+|||||++.+.+.
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999988754

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.38  E-value=0.006  Score=48.44  Aligned_cols=21  Identities=24%  Similarity=0.616  Sum_probs=18.5

Q ss_pred             eEEEEcCCCCCcchhhhhhcc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~g  228 (356)
                      +++++|+.|+|||||++.+.+
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            379999999999999997764

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=94.35  E-value=0.0069  Score=50.09  Aligned_cols=22  Identities=45%  Similarity=0.445  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCCcchhhhhhccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      ++||+|..||||||..+.+..+
T Consensus         5 iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHC
Confidence            6899999999999999988643

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=94.31  E-value=0.0095  Score=46.50  Aligned_cols=23  Identities=39%  Similarity=0.629  Sum_probs=20.9

Q ss_pred             eeeeecCCCCchhhHHHHHhCCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      +|+++|+.++|||||++.+.|.-
T Consensus         3 kI~lvG~~nvGKSsLin~l~~~~   25 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAGRE   25 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998753

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.31  E-value=0.0079  Score=50.15  Aligned_cols=25  Identities=28%  Similarity=0.327  Sum_probs=22.5

Q ss_pred             ecCCCeEEEEcCCCCCcchhhhhhc
Q psy2684         203 LDMESRVALVGPNGIGKSTFLNLLK  227 (356)
Q Consensus       203 i~~ge~~~i~G~nGsGKSTll~~l~  227 (356)
                      +++|.++.|.||.|||||||...++
T Consensus        31 i~~G~~~li~G~pGsGKT~l~lq~~   55 (251)
T d1szpa2          31 VETGSITELFGEFRTGKSQLCHTLA   55 (251)
T ss_dssp             EESSSEEEEEESTTSSHHHHHHHHT
T ss_pred             CcCCeEEEEEcCCCCCHHHHHHHHH
Confidence            7899999999999999999987554

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=94.30  E-value=0.0099  Score=46.71  Aligned_cols=23  Identities=35%  Similarity=0.616  Sum_probs=20.7

Q ss_pred             eeeeecCCCCchhhHHHHHhCCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      +++++|+.|+|||||++.+.+..
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~~   26 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGED   26 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            68999999999999999998853

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=94.27  E-value=0.0071  Score=50.17  Aligned_cols=41  Identities=24%  Similarity=0.192  Sum_probs=30.2

Q ss_pred             cCCCeEEEEcCCCCCcchhhhhhcccccc--CCCceeEeeecc
Q psy2684         204 DMESRVALVGPNGIGKSTFLNLLKGELTP--NKGKVLLEKVNF  244 (356)
Q Consensus       204 ~~ge~~~i~G~nGsGKSTll~~l~gl~~p--~~G~i~~~g~~~  244 (356)
                      .+|-++-|.|.+||||||+.+.|.-.+..  ..-.+.++|..+
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~i   64 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI   64 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHH
Confidence            56778999999999999999998765432  223456666554

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.26  E-value=0.0086  Score=47.87  Aligned_cols=23  Identities=30%  Similarity=0.577  Sum_probs=20.6

Q ss_pred             eeeeecCCCCchhhHHHHHhCCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      .|+++|+.++|||||++.|.|..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~   24 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKK   24 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999853

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=94.25  E-value=0.0068  Score=50.31  Aligned_cols=34  Identities=29%  Similarity=0.217  Sum_probs=24.6

Q ss_pred             CCeEEEEcCCCCCcchhhhhhccccccCCCceeE
Q psy2684         206 ESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL  239 (356)
Q Consensus       206 ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~  239 (356)
                      ..++.++||+|+||||.+--|+-.+.-..-+|.+
T Consensus        10 ~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~l   43 (207)
T d1ls1a2          10 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLL   43 (207)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence            3478999999999999988777666533333433

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.23  E-value=0.0078  Score=49.64  Aligned_cols=27  Identities=26%  Similarity=0.370  Sum_probs=23.6

Q ss_pred             CCCeEEEEcCCCCCcchhhhhhccccc
Q psy2684         205 MESRVALVGPNGIGKSTFLNLLKGELT  231 (356)
Q Consensus       205 ~ge~~~i~G~nGsGKSTll~~l~gl~~  231 (356)
                      +|.+++|-|+-||||||+++.|...+.
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~   27 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLE   27 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            478899999999999999999887554

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.22  E-value=0.0076  Score=47.61  Aligned_cols=22  Identities=32%  Similarity=0.569  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCcchhhhhhccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      +++|+|++|+|||||++.+.+-
T Consensus         5 Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999987653

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.20  E-value=0.0083  Score=49.75  Aligned_cols=29  Identities=28%  Similarity=0.231  Sum_probs=24.7

Q ss_pred             cCCCeEEEEcCCCCCcchhhhhhcccccc
Q psy2684         204 DMESRVALVGPNGIGKSTFLNLLKGELTP  232 (356)
Q Consensus       204 ~~ge~~~i~G~nGsGKSTll~~l~gl~~p  232 (356)
                      .+|-+++|-|+-||||||+.+.|...+..
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~   29 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALCA   29 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            36889999999999999999998776543

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.20  E-value=0.0097  Score=47.04  Aligned_cols=23  Identities=43%  Similarity=0.497  Sum_probs=19.7

Q ss_pred             eeeeecCCCCchhhHHHHHhCCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      ++.++|+.||||||+.+.++..+
T Consensus         3 ~IvliG~~G~GKSTig~~La~~l   25 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAKAL   25 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHHh
Confidence            57788999999999999997543

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=94.13  E-value=0.0076  Score=48.46  Aligned_cols=22  Identities=41%  Similarity=0.635  Sum_probs=20.2

Q ss_pred             eeeeecCCCCchhhHHHHHhCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~  272 (356)
                      .||++|+.++|||||++.|+|.
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEE
T ss_pred             eEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999874

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.13  E-value=0.0073  Score=48.21  Aligned_cols=21  Identities=38%  Similarity=0.763  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCCcchhhhhhcc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~g  228 (356)
                      +++|+|+.|+|||||++.+.+
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            479999999999999997755

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=94.05  E-value=0.012  Score=46.66  Aligned_cols=23  Identities=26%  Similarity=0.349  Sum_probs=19.1

Q ss_pred             CeeeeecCCCCchhhHHHHHhCC
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g~  272 (356)
                      +-|.++|+.||||||+.+.++..
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~   25 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARA   25 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHHHH
Confidence            34668899999999999999753

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.02  E-value=0.011  Score=48.13  Aligned_cols=21  Identities=57%  Similarity=0.792  Sum_probs=18.1

Q ss_pred             eeeecCCCCchhhHHHHHhCC
Q psy2684         252 VALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       252 ialvG~nG~GKsTll~~l~g~  272 (356)
                      |.++||+|+||||+++.++..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            678899999999999988653

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=94.00  E-value=0.012  Score=46.69  Aligned_cols=23  Identities=39%  Similarity=0.537  Sum_probs=19.7

Q ss_pred             eeeeecCCCCchhhHHHHHhCCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      .|+++|+.|+|||||++.++|.-
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999853

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.00  E-value=0.017  Score=45.62  Aligned_cols=30  Identities=27%  Similarity=0.469  Sum_probs=22.7

Q ss_pred             eEEEEcCCCCCcchhhhhhcc-----ccccCCCce
Q psy2684         208 RVALVGPNGIGKSTFLNLLKG-----ELTPNKGKV  237 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~g-----l~~p~~G~i  237 (356)
                      .++|+|.+|+|||||++.+.+     -+.|+.|..
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~   41 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS   41 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCcccCcccccc
Confidence            589999999999999997654     234555544

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.00  E-value=0.013  Score=47.19  Aligned_cols=24  Identities=25%  Similarity=0.529  Sum_probs=20.2

Q ss_pred             CCeeeeecCCCCchhhHHHHHhCC
Q psy2684         249 ESRVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       249 ~~~ialvG~nG~GKsTll~~l~g~  272 (356)
                      ++-+.++||+|+||+|+++.|...
T Consensus         3 ~k~ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           3 RKTLVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHh
Confidence            456789999999999999988743

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.98  E-value=0.0082  Score=47.32  Aligned_cols=21  Identities=24%  Similarity=0.506  Sum_probs=18.2

Q ss_pred             eEEEEcCCCCCcchhhhhhcc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~g  228 (356)
                      +++++|+.|+|||||++.+.+
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999986664

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=93.98  E-value=0.011  Score=46.71  Aligned_cols=24  Identities=33%  Similarity=0.505  Sum_probs=21.3

Q ss_pred             CCeeeeecCCCCchhhHHHHHhCC
Q psy2684         249 ESRVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       249 ~~~ialvG~nG~GKsTll~~l~g~  272 (356)
                      .-++.++|..|+|||||++.+.+.
T Consensus        15 ~~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          15 EHKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            357899999999999999999874

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=93.97  E-value=0.0083  Score=48.12  Aligned_cols=23  Identities=35%  Similarity=0.524  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      .++++|+.|+|||||++.+.+-.
T Consensus        19 KI~lvG~~~vGKTsLi~~l~~~~   41 (182)
T d1moza_          19 RILILGLDGAGKTTILYRLQIGE   41 (182)
T ss_dssp             EEEEEEETTSSHHHHHHHTCCSE
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999887643

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.96  E-value=0.011  Score=47.14  Aligned_cols=22  Identities=36%  Similarity=0.502  Sum_probs=20.2

Q ss_pred             eeeeecCCCCchhhHHHHHhCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~  272 (356)
                      .||++|..++|||||++.|.|.
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999875

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.95  E-value=0.0083  Score=50.12  Aligned_cols=23  Identities=39%  Similarity=0.618  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      .+.|.||+|+||||++++++..+
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHH
Confidence            37899999999999999998754

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=93.89  E-value=0.0087  Score=47.66  Aligned_cols=25  Identities=36%  Similarity=0.450  Sum_probs=21.5

Q ss_pred             CCeeeeecCCCCchhhHHHHHhCCC
Q psy2684         249 ESRVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       249 ~~~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      .-+|+++|..++|||||++.|.+.-
T Consensus        16 ~~~I~lvG~~NvGKSSL~n~L~~~~   40 (188)
T d1puia_          16 GIEVAFAGRSNAGKSSALNTLTNQK   40 (188)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4469999999999999999998853

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.89  E-value=0.0099  Score=47.07  Aligned_cols=21  Identities=38%  Similarity=0.646  Sum_probs=18.5

Q ss_pred             eEEEEcCCCCCcchhhhhhcc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~g  228 (356)
                      +++|+|..|+|||||++.+.+
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999987665

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=93.89  E-value=0.015  Score=46.99  Aligned_cols=24  Identities=38%  Similarity=0.487  Sum_probs=20.9

Q ss_pred             cCCeeeeecCCCCchhhHHHHHhC
Q psy2684         248 MESRVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       248 ~~~~ialvG~nG~GKsTll~~l~g  271 (356)
                      .+-++.++||.||||||..+.|+.
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            356788999999999999999984

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.88  E-value=0.0099  Score=47.82  Aligned_cols=22  Identities=32%  Similarity=0.647  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCCcchhhhhhccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      +++|+|+.|+|||||++.+.+-
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            3789999999999999987653

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=93.85  E-value=0.012  Score=49.15  Aligned_cols=20  Identities=35%  Similarity=0.536  Sum_probs=18.0

Q ss_pred             eeeecCCCCchhhHHHHHhC
Q psy2684         252 VALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       252 ialvG~nG~GKsTll~~l~g  271 (356)
                      ++++|+.|||||||++.+..
T Consensus         3 i~v~G~~GsGKTTLl~~ll~   22 (244)
T d1yrba1           3 VVFVGTAGSGKTTLTGEFGR   22 (244)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEcCCCCcHHHHHHHHHH
Confidence            67889999999999999874

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=93.83  E-value=0.01  Score=50.95  Aligned_cols=35  Identities=20%  Similarity=0.270  Sum_probs=28.2

Q ss_pred             cccccceeeecCCCeEEEEcCCCCCcchhhhhhcc
Q psy2684         194 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       194 ~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~g  228 (356)
                      +-|+++..-+.+|+.+.|.|++|+|||||+.-++-
T Consensus        23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             hhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            34555544578999999999999999999877764

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=93.82  E-value=0.0085  Score=47.39  Aligned_cols=29  Identities=24%  Similarity=0.219  Sum_probs=25.2

Q ss_pred             eecCCCeEEEEcCCCCCcchhhhhhcccc
Q psy2684         202 GLDMESRVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       202 ~i~~ge~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      ...+|.++.+.|+=|||||||.+.++.-+
T Consensus        29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             CCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             cCCCCeEEEEecCCCccHHHHHHHHHhhc
Confidence            44689999999999999999999887654

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.81  E-value=0.0092  Score=47.51  Aligned_cols=22  Identities=27%  Similarity=0.593  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCCcchhhhhhccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      +++|+|+.|+|||||++.+.+-
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            4789999999999999987643

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.79  E-value=0.012  Score=49.74  Aligned_cols=24  Identities=46%  Similarity=0.667  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCCcchhhhhhccccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGELT  231 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~~  231 (356)
                      .+.|.||+|+||||++++++..+.
T Consensus        54 ~lll~GPpG~GKTt~a~~la~~~~   77 (253)
T d1sxja2          54 AAMLYGPPGIGKTTAAHLVAQELG   77 (253)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHH
Confidence            468999999999999999998653

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.77  E-value=0.014  Score=46.55  Aligned_cols=22  Identities=27%  Similarity=0.400  Sum_probs=19.1

Q ss_pred             eeeeecCCCCchhhHHHHHhCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~  272 (356)
                      +|.++|+.||||||+.+.|+..
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAA   23 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5788999999999999998653

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.76  E-value=0.011  Score=49.12  Aligned_cols=27  Identities=26%  Similarity=0.315  Sum_probs=24.1

Q ss_pred             CCCeEEEEcCCCCCcchhhhhhccccc
Q psy2684         205 MESRVALVGPNGIGKSTFLNLLKGELT  231 (356)
Q Consensus       205 ~ge~~~i~G~nGsGKSTll~~l~gl~~  231 (356)
                      +|-+++|-|+-||||||+++.|+-.+.
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~   28 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQ   28 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            688999999999999999999986654

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.76  E-value=0.013  Score=46.42  Aligned_cols=21  Identities=52%  Similarity=0.831  Sum_probs=19.4

Q ss_pred             eeeecCCCCchhhHHHHHhCC
Q psy2684         252 VALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       252 ialvG~nG~GKsTll~~l~g~  272 (356)
                      |+++|..++|||||++.+.|.
T Consensus         8 I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           8 IAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            788999999999999999974

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=93.74  E-value=0.01  Score=50.19  Aligned_cols=25  Identities=20%  Similarity=0.270  Sum_probs=21.3

Q ss_pred             CCCeEEEEcCCCCCcchhhhhhccc
Q psy2684         205 MESRVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       205 ~ge~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      .+..+.|.||.|+|||||++.++..
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~   52 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINE   52 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHH
Confidence            4678999999999999999977643

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.72  E-value=0.0089  Score=47.13  Aligned_cols=22  Identities=32%  Similarity=0.659  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCCcchhhhhhccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      +++++|.+|+|||||++.+.+-
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999977653

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.71  E-value=0.0095  Score=49.94  Aligned_cols=22  Identities=32%  Similarity=0.596  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCcchhhhhhccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      ++||+|...||||||++.|.+.
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHhh
Confidence            5899999999999999999875

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.69  E-value=0.013  Score=48.15  Aligned_cols=23  Identities=22%  Similarity=0.254  Sum_probs=19.5

Q ss_pred             eeeeecCCCCchhhHHHHHhCCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      .||+.|+.||||||+.+.|...+
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l   26 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLL   26 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47889999999999999886544

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.68  E-value=0.014  Score=47.52  Aligned_cols=23  Identities=30%  Similarity=0.694  Sum_probs=20.8

Q ss_pred             CeeeeecCCCCchhhHHHHHhCC
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g~  272 (356)
                      -+|+++|+.++|||||++.+.+.
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999999875

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.66  E-value=0.015  Score=46.43  Aligned_cols=22  Identities=55%  Similarity=0.687  Sum_probs=20.3

Q ss_pred             eeeeecCCCCchhhHHHHHhCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~  272 (356)
                      .|+++|..|+|||||++.++|.
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999985

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.64  E-value=0.012  Score=46.44  Aligned_cols=21  Identities=24%  Similarity=0.468  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCCcchhhhhhcc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~g  228 (356)
                      .++|+|+.|+|||||++.+.+
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999998754

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.63  E-value=0.012  Score=46.63  Aligned_cols=23  Identities=35%  Similarity=0.663  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      .++|+|..|+|||||++.+.+..
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~~   25 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGVE   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCcCHHHHHHHHhCCc
Confidence            47899999999999999988764

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.54  E-value=0.011  Score=47.54  Aligned_cols=21  Identities=29%  Similarity=0.713  Sum_probs=18.4

Q ss_pred             eEEEEcCCCCCcchhhhhhcc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~g  228 (356)
                      +++|+|..|+|||||++.+.+
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999997664

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.52  E-value=0.013  Score=48.43  Aligned_cols=24  Identities=25%  Similarity=0.422  Sum_probs=21.6

Q ss_pred             ecCCCeEEEEcCCCCCcchhhhhh
Q psy2684         203 LDMESRVALVGPNGIGKSTFLNLL  226 (356)
Q Consensus       203 i~~ge~~~i~G~nGsGKSTll~~l  226 (356)
                      +++|+++.|.|++|+|||+|+.-+
T Consensus        23 i~~G~~~~I~G~~G~GKT~la~~~   46 (242)
T d1tf7a1          23 LPIGRSTLVSGTSGTGKTLFSIQF   46 (242)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHH
Confidence            789999999999999999998543

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.50  E-value=0.011  Score=49.24  Aligned_cols=22  Identities=36%  Similarity=0.613  Sum_probs=20.0

Q ss_pred             EEEEcCCCCCcchhhhhhcccc
Q psy2684         209 VALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       209 ~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      +.|.||+|+||||++++++..+
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHH
Confidence            7899999999999999998764

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=93.47  E-value=0.015  Score=46.99  Aligned_cols=22  Identities=32%  Similarity=0.478  Sum_probs=19.1

Q ss_pred             eeeeecCCCCchhhHHHHHhCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~  272 (356)
                      +|.+.||.||||||+.+.|+..
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5788999999999999988653

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.46  E-value=0.013  Score=49.82  Aligned_cols=24  Identities=25%  Similarity=0.315  Sum_probs=20.6

Q ss_pred             eeeeecCCCCchhhHHHHHhCCCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGELT  274 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~~  274 (356)
                      .+.+.||.||||||+++.|++.+.
T Consensus        34 ~ilL~GpPGtGKT~la~~la~~~~   57 (273)
T d1gvnb_          34 AFLLGGQPGSGKTSLRSAIFEETQ   57 (273)
T ss_dssp             EEEEECCTTSCTHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            466779999999999999998654

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=93.46  E-value=0.018  Score=47.57  Aligned_cols=24  Identities=25%  Similarity=0.427  Sum_probs=19.7

Q ss_pred             CCeeeeecCCCCchhhHHHHHhCC
Q psy2684         249 ESRVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       249 ~~~ialvG~nG~GKsTll~~l~g~  272 (356)
                      |..+.++||+|+|||||.+.+...
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhh
Confidence            345678899999999999888654

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.46  E-value=0.013  Score=46.59  Aligned_cols=22  Identities=36%  Similarity=0.601  Sum_probs=18.2

Q ss_pred             eEEEEcCCCCCcchhhhhhccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      .++|+|+.|+|||||++.+.+-
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC--
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4799999999999999987654

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.46  E-value=0.013  Score=46.44  Aligned_cols=21  Identities=24%  Similarity=0.665  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCcchhhhhhcc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~g  228 (356)
                      +++|+|..|+|||||++.+.+
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            479999999999999998775

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.44  E-value=0.012  Score=49.30  Aligned_cols=25  Identities=16%  Similarity=0.181  Sum_probs=22.8

Q ss_pred             ecCCCeEEEEcCCCCCcchhhhhhc
Q psy2684         203 LDMESRVALVGPNGIGKSTFLNLLK  227 (356)
Q Consensus       203 i~~ge~~~i~G~nGsGKSTll~~l~  227 (356)
                      |++|.++.|.|++|||||+|...++
T Consensus        34 ip~G~~~~i~G~~GsGKT~lalq~~   58 (258)
T d1v5wa_          34 IESMAITEAFGEFRTGKTQLSHTLC   58 (258)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHH
Confidence            7899999999999999999987665

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=93.40  E-value=0.013  Score=53.51  Aligned_cols=34  Identities=29%  Similarity=0.380  Sum_probs=27.0

Q ss_pred             cCCCeEEEEcCCCCCcchhhhhhccccccCCCce
Q psy2684         204 DMESRVALVGPNGIGKSTFLNLLKGELTPNKGKV  237 (356)
Q Consensus       204 ~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i  237 (356)
                      .++..+.|.||.||||||++.++...+.....+|
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i  189 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNI  189 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCE
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhhcCCCceE
Confidence            5677899999999999999999888664433443

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.39  E-value=0.014  Score=48.81  Aligned_cols=28  Identities=18%  Similarity=0.292  Sum_probs=24.1

Q ss_pred             ecCCCeEEEEcCCCCCcchhhhhhcccc
Q psy2684         203 LDMESRVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       203 i~~ge~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      +++|..+.|.|++|||||||+.-++--.
T Consensus        23 i~~gsl~li~G~pGsGKT~l~~qia~~~   50 (242)
T d1tf7a2          23 FFKDSIILATGATGTGKTLLVSRFVENA   50 (242)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999987665543

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.37  E-value=0.012  Score=49.38  Aligned_cols=24  Identities=21%  Similarity=0.432  Sum_probs=21.5

Q ss_pred             ecCCCeEEEEcCCCCCcchhhhhh
Q psy2684         203 LDMESRVALVGPNGIGKSTFLNLL  226 (356)
Q Consensus       203 i~~ge~~~i~G~nGsGKSTll~~l  226 (356)
                      +++|.++.|.||+|||||||.--+
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~   56 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTL   56 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHH
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHH
Confidence            679999999999999999997644

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.35  E-value=0.0098  Score=47.81  Aligned_cols=22  Identities=36%  Similarity=0.376  Sum_probs=18.3

Q ss_pred             eeeeecCCCCchhhHHHHHhCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~  272 (356)
                      .|-++|+.||||||+.+.|+..
T Consensus        21 vI~L~G~pGSGKTTiAk~La~~   42 (195)
T d1x6va3          21 TVWLTGLSGAGKTTVSMALEEY   42 (195)
T ss_dssp             EEEEESSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3456799999999999999754

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.35  E-value=0.015  Score=45.76  Aligned_cols=22  Identities=27%  Similarity=0.528  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCCcchhhhhhccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      .++|+|..|+|||||++.+.+-
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4799999999999999987653

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=93.34  E-value=0.012  Score=49.20  Aligned_cols=25  Identities=44%  Similarity=0.825  Sum_probs=21.5

Q ss_pred             EEEEcCCCCCcchhhhhhccccccC
Q psy2684         209 VALVGPNGIGKSTFLNLLKGELTPN  233 (356)
Q Consensus       209 ~~i~G~nGsGKSTll~~l~gl~~p~  233 (356)
                      +.+.||.|+||||+.++++..+...
T Consensus        38 ~L~~GPpGtGKT~lA~~la~~~~~~   62 (238)
T d1in4a2          38 VLLAGPPGLGKTTLAHIIASELQTN   62 (238)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred             EEEECCCCCcHHHHHHHHHhccCCC
Confidence            6799999999999999999776543

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.34  E-value=0.013  Score=52.06  Aligned_cols=24  Identities=42%  Similarity=0.609  Sum_probs=20.9

Q ss_pred             CeEEEEcCCCCCcchhhhhhcccc
Q psy2684         207 SRVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       207 e~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      -+++|.||.|+|||||+..+...+
T Consensus        52 ~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          52 IRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEeeeCCCCCCHHHHHHHHHHHH
Confidence            368999999999999999988643

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.31  E-value=0.014  Score=50.83  Aligned_cols=22  Identities=27%  Similarity=0.318  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCCcchhhhhhccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      ++||.|+.|||||||...|.-.
T Consensus        29 iIGi~G~qGSGKSTl~~~l~~~   50 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIYNH   50 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHH
Confidence            6899999999999999876543

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.31  E-value=0.014  Score=45.75  Aligned_cols=21  Identities=14%  Similarity=0.496  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCCcchhhhhhcc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~g  228 (356)
                      +++|+|..|+|||||++.+.+
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998875

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.29  E-value=0.015  Score=45.70  Aligned_cols=22  Identities=27%  Similarity=0.602  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCCcchhhhhhccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      +++|+|..|+|||||++.+.+-
T Consensus         6 KivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999877653

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=93.27  E-value=0.013  Score=46.52  Aligned_cols=23  Identities=35%  Similarity=0.481  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      .+.|+|++|+|||||++.+.+-.
T Consensus        14 kIvlvG~~~vGKTSli~rl~~~~   36 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLKLGQ   36 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTTCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999987644

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.26  E-value=0.018  Score=45.76  Aligned_cols=23  Identities=48%  Similarity=0.842  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      .+.|+|..|+|||||++.+.+..
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~~~   27 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAGVH   27 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCc
Confidence            47899999999999999887754

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.24  E-value=0.014  Score=46.37  Aligned_cols=21  Identities=29%  Similarity=0.601  Sum_probs=9.0

Q ss_pred             eEEEEcCCCCCcchhhhhhcc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~g  228 (356)
                      .++|+|..|+|||||++.+.+
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEECCCCC-----------
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999987765

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.23  E-value=0.013  Score=48.73  Aligned_cols=25  Identities=24%  Similarity=0.343  Sum_probs=22.7

Q ss_pred             ecCCCeEEEEcCCCCCcchhhhhhc
Q psy2684         203 LDMESRVALVGPNGIGKSTFLNLLK  227 (356)
Q Consensus       203 i~~ge~~~i~G~nGsGKSTll~~l~  227 (356)
                      +.+|+++.|.|++|+|||||..-++
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a   55 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSC   55 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHH
Confidence            7899999999999999999987665

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.20  E-value=0.013  Score=46.17  Aligned_cols=21  Identities=33%  Similarity=0.627  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCCcchhhhhhcc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~g  228 (356)
                      +++|+|..|+|||||++.+..
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998764

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.18  E-value=0.013  Score=45.90  Aligned_cols=21  Identities=14%  Similarity=0.442  Sum_probs=18.4

Q ss_pred             eEEEEcCCCCCcchhhhhhcc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~g  228 (356)
                      .++|+|..|+|||||++.+..
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999997764

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.17  E-value=0.013  Score=46.66  Aligned_cols=22  Identities=27%  Similarity=0.703  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCcchhhhhhccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      +++|+|..|+|||||++.+.+-
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999988763

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=93.17  E-value=0.02  Score=45.86  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=19.7

Q ss_pred             eeeeecCCCCchhhHHHHHhCCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      +|.++|+.||||||+.+.|+..+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57789999999999999887643

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=93.15  E-value=0.015  Score=51.16  Aligned_cols=23  Identities=26%  Similarity=0.582  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      -+.++||+|+|||+|.++|+..+
T Consensus        51 ~iLl~GPpG~GKT~lAkalA~~~   73 (309)
T d1ofha_          51 NILMIGPTGVGKTEIARRLAKLA   73 (309)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHhhcc
Confidence            35689999999999999999875

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.13  E-value=0.013  Score=46.78  Aligned_cols=22  Identities=23%  Similarity=0.471  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCcchhhhhhccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      ++.|+|.+|+|||||++.+.+-
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999877654

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.09  E-value=0.0065  Score=47.45  Aligned_cols=22  Identities=50%  Similarity=0.745  Sum_probs=20.3

Q ss_pred             eeeeecCCCCchhhHHHHHhCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~  272 (356)
                      +|+++|..++|||||++.+.|.
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999875

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.07  E-value=0.02  Score=48.92  Aligned_cols=23  Identities=35%  Similarity=0.648  Sum_probs=21.1

Q ss_pred             eeeeecCCCCchhhHHHHHhCCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      +|+++|..|+||||+++.|+|.-
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            68999999999999999999963

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.07  E-value=0.016  Score=46.47  Aligned_cols=30  Identities=30%  Similarity=0.399  Sum_probs=25.7

Q ss_pred             eEEEEcCCCCCcchhhhhhccccccCCCce
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGELTPNKGKV  237 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~~p~~G~i  237 (356)
                      .+.++|..|+|||||++-+.....|+.|..
T Consensus         4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~   33 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV   33 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence            478999999999999999887777877743

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=93.07  E-value=0.019  Score=46.39  Aligned_cols=23  Identities=26%  Similarity=0.300  Sum_probs=19.8

Q ss_pred             CeeeeecCCCCchhhHHHHHhCC
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g~  272 (356)
                      ..|.++||.||||||+.+.|+..
T Consensus         7 ~iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           7 NVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            46789999999999999988753

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.06  E-value=0.014  Score=46.32  Aligned_cols=20  Identities=40%  Similarity=0.692  Sum_probs=17.6

Q ss_pred             EEEEcCCCCCcchhhhhhcc
Q psy2684         209 VALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       209 ~~i~G~nGsGKSTll~~l~g  228 (356)
                      ++|+|++|+|||||++.+..
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999986654

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.00  E-value=0.015  Score=45.90  Aligned_cols=21  Identities=24%  Similarity=0.436  Sum_probs=18.4

Q ss_pred             eEEEEcCCCCCcchhhhhhcc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~g  228 (356)
                      ++.|+|..|+|||||++.+.+
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999997754

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.97  E-value=0.016  Score=47.21  Aligned_cols=24  Identities=33%  Similarity=0.614  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCCcchhhhhhccccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGELT  231 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~~  231 (356)
                      +++|-|.-||||||+++.|...+.
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~   25 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            578999999999999999987654

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=92.94  E-value=0.026  Score=46.85  Aligned_cols=24  Identities=33%  Similarity=0.346  Sum_probs=18.7

Q ss_pred             cCCeeeeecCCCCchhhHHHHHhC
Q psy2684         248 MESRVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       248 ~~~~ialvG~nG~GKsTll~~l~g  271 (356)
                      ....++++||+|+||||.+--|+-
T Consensus        10 ~p~vi~lvGptGvGKTTTiAKLAa   33 (213)
T d1vmaa2          10 PPFVIMVVGVNGTGKTTSCGKLAK   33 (213)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345689999999999997655554

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.91  E-value=0.021  Score=46.39  Aligned_cols=22  Identities=23%  Similarity=0.246  Sum_probs=19.1

Q ss_pred             eeeeecCCCCchhhHHHHHhCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~  272 (356)
                      .|.++|..|+||||+++.|+..
T Consensus         4 li~l~GlpgsGKSTla~~L~~~   25 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTRY   25 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4788999999999999998753

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=92.86  E-value=0.021  Score=45.44  Aligned_cols=22  Identities=27%  Similarity=0.427  Sum_probs=18.9

Q ss_pred             eeeeecCCCCchhhHHHHHhCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~  272 (356)
                      +|.++|+.||||||..+.|+..
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~   23 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEK   23 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5778999999999999988653

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.85  E-value=0.018  Score=45.26  Aligned_cols=22  Identities=32%  Similarity=0.569  Sum_probs=19.6

Q ss_pred             eeeeecCCCCchhhHHHHHhCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~  272 (356)
                      +++++|+.|+|||||++.+.+.
T Consensus         5 Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999888764

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=92.84  E-value=0.02  Score=44.92  Aligned_cols=22  Identities=36%  Similarity=0.600  Sum_probs=19.2

Q ss_pred             eeeeecCCCCchhhHHHHHhCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~  272 (356)
                      +++++|+.|+|||||++.+.+.
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6889999999999999977653

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.84  E-value=0.015  Score=47.24  Aligned_cols=20  Identities=35%  Similarity=0.642  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCcchhhhhhcc
Q psy2684         209 VALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       209 ~~i~G~nGsGKSTll~~l~g  228 (356)
                      ++|+|+.|+|||||++.+.+
T Consensus         9 ivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhh
Confidence            79999999999999997764

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.84  E-value=0.02  Score=45.50  Aligned_cols=21  Identities=38%  Similarity=0.763  Sum_probs=18.7

Q ss_pred             eeeeecCCCCchhhHHHHHhC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g  271 (356)
                      +++++|+.|+|||||++.+.+
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999987755

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.82  E-value=0.015  Score=46.14  Aligned_cols=21  Identities=29%  Similarity=0.542  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCCcchhhhhhcc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~g  228 (356)
                      +++|+|..|+|||||++.+.+
T Consensus         7 KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            379999999999999998764

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.82  E-value=0.02  Score=45.33  Aligned_cols=21  Identities=24%  Similarity=0.662  Sum_probs=18.9

Q ss_pred             eeeeecCCCCchhhHHHHHhC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g  271 (356)
                      +++++|+.|+|||||++.+.+
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            588999999999999998765

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=92.82  E-value=0.015  Score=48.80  Aligned_cols=23  Identities=39%  Similarity=0.761  Sum_probs=20.4

Q ss_pred             EEEEcCCCCCcchhhhhhccccc
Q psy2684         209 VALVGPNGIGKSTFLNLLKGELT  231 (356)
Q Consensus       209 ~~i~G~nGsGKSTll~~l~gl~~  231 (356)
                      +.+.||.|+||||+.+++++.+.
T Consensus        38 ~Ll~GPpG~GKTtla~~la~~~~   60 (239)
T d1ixsb2          38 LLLFGPPGLGKTTLAHVIAHELG   60 (239)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            57899999999999999998653

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.80  E-value=0.02  Score=45.16  Aligned_cols=21  Identities=24%  Similarity=0.616  Sum_probs=18.8

Q ss_pred             eeeeecCCCCchhhHHHHHhC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g  271 (356)
                      ++.++|+.|+|||||++.+.+
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            588999999999999998764

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=92.77  E-value=0.026  Score=47.50  Aligned_cols=30  Identities=27%  Similarity=0.328  Sum_probs=25.0

Q ss_pred             CeEEEEcCCCCCcchhhhhhccccccCCCc
Q psy2684         207 SRVALVGPNGIGKSTFLNLLKGELTPNKGK  236 (356)
Q Consensus       207 e~~~i~G~nGsGKSTll~~l~gl~~p~~G~  236 (356)
                      ..+.|.||.|+||||+++.++..+....+.
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~l~~~~~~   73 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWELYKDKTTA   73 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTTSCCC
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHhcccCC
Confidence            468899999999999999999887654443

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.74  E-value=0.024  Score=45.67  Aligned_cols=22  Identities=27%  Similarity=0.308  Sum_probs=19.0

Q ss_pred             eeeeecCCCCchhhHHHHHhCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~  272 (356)
                      .|.++||.||||||..+.|+..
T Consensus         3 iI~i~GppGSGKsT~a~~La~~   24 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEK   24 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4788999999999999988753

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=92.74  E-value=0.019  Score=49.89  Aligned_cols=38  Identities=21%  Similarity=0.304  Sum_probs=30.9

Q ss_pred             ccccceeeecCCCeEEEEcCCCCCcchhhhhhccccccC
Q psy2684         195 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN  233 (356)
Q Consensus       195 ~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~  233 (356)
                      +++-+ +.|-+|++.+|+|++|+|||||+..++.-..-+
T Consensus        33 ~ID~l-~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~~~   70 (289)
T d1xpua3          33 VLDLA-SPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYN   70 (289)
T ss_dssp             HHHHH-SCCBTTCEEEEEECSSSSHHHHHHHHHHHHHHH
T ss_pred             eeeec-ccccCCCeeeEeCCCCCCHHHHHHHHHHHHhhc
Confidence            44443 678999999999999999999999888755443

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.73  E-value=0.028  Score=45.45  Aligned_cols=25  Identities=28%  Similarity=0.320  Sum_probs=21.0

Q ss_pred             CCeeeeecCCCCchhhHHHHHhCCC
Q psy2684         249 ESRVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       249 ~~~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      -..+.++||.||||||+.+.|+..+
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            3457889999999999999998654

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.70  E-value=0.022  Score=46.03  Aligned_cols=23  Identities=35%  Similarity=0.475  Sum_probs=20.1

Q ss_pred             eeeeecCCCCchhhHHHHHhCCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      .|++-|.-||||||+++.|...+
T Consensus        11 ~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1          11 TVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             EEEEECSTTSCHHHHHHTTGGGT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57888999999999999998654

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.70  E-value=0.021  Score=44.99  Aligned_cols=22  Identities=23%  Similarity=0.493  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCCcchhhhhhccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      +++|+|..|+|||||++.+.+-
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5789999999999999976643

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=92.69  E-value=0.021  Score=45.30  Aligned_cols=22  Identities=41%  Similarity=0.489  Sum_probs=18.5

Q ss_pred             eeeecCCCCchhhHHHHHhCCC
Q psy2684         252 VALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       252 ialvG~nG~GKsTll~~l~g~~  273 (356)
                      +.+.|+.||||||+++.|+..+
T Consensus         4 ivi~G~~GsGKTT~~~~La~~L   25 (194)
T d1nksa_           4 GIVTGIPGVGKSTVLAKVKEIL   25 (194)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            4567999999999999997654

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.68  E-value=0.017  Score=46.23  Aligned_cols=21  Identities=24%  Similarity=0.458  Sum_probs=18.5

Q ss_pred             eEEEEcCCCCCcchhhhhhcc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~g  228 (356)
                      +++|+|..|+|||||++.+.+
T Consensus         7 KivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999987654

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.67  E-value=0.017  Score=45.55  Aligned_cols=21  Identities=29%  Similarity=0.567  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCCcchhhhhhcc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~g  228 (356)
                      +++|+|+.|+|||||++.+.+
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999997764

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.65  E-value=0.016  Score=46.01  Aligned_cols=21  Identities=29%  Similarity=0.520  Sum_probs=18.5

Q ss_pred             eEEEEcCCCCCcchhhhhhcc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~g  228 (356)
                      +++|+|..|+|||||++.+.+
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999997664

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=92.62  E-value=0.031  Score=46.13  Aligned_cols=24  Identities=38%  Similarity=0.472  Sum_probs=18.8

Q ss_pred             CCeeeeecCCCCchhhHHHHHhCC
Q psy2684         249 ESRVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       249 ~~~ialvG~nG~GKsTll~~l~g~  272 (356)
                      ...++++||+|+||||.+--|+..
T Consensus         6 ~~vi~lvGptGvGKTTTiaKLA~~   29 (207)
T d1okkd2           6 GRVVLVVGVNGVGKTTTIAKLGRY   29 (207)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            456789999999999986555543

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=92.62  E-value=0.024  Score=44.79  Aligned_cols=23  Identities=39%  Similarity=0.640  Sum_probs=20.5

Q ss_pred             CeeeeecCCCCchhhHHHHHhCC
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g~  272 (356)
                      -+++++|+.|+|||||++.+.+.
T Consensus        17 ~kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          17 VRILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999998764

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=92.58  E-value=0.026  Score=45.68  Aligned_cols=23  Identities=30%  Similarity=0.463  Sum_probs=20.3

Q ss_pred             CeeeeecCCCCchhhHHHHHhCC
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g~  272 (356)
                      -+|.++|+-||||||+.+.|+..
T Consensus         7 mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           7 LRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eeEEEECCCCCCHHHHHHHHHHH
Confidence            47889999999999999999764

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=92.58  E-value=0.023  Score=48.58  Aligned_cols=24  Identities=38%  Similarity=0.675  Sum_probs=21.1

Q ss_pred             CeEEEEcCCCCCcchhhhhhcccc
Q psy2684         207 SRVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       207 e~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      .-+.+.||.|+|||++.+.++..+
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~~~   69 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAGEA   69 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHHHc
Confidence            347899999999999999999865

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.55  E-value=0.023  Score=46.33  Aligned_cols=22  Identities=27%  Similarity=0.265  Sum_probs=19.7

Q ss_pred             eeeeecCCCCchhhHHHHHhCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~  272 (356)
                      .|+++|+.|+|||||++.+.+.
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5889999999999999999764

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.52  E-value=0.022  Score=47.42  Aligned_cols=25  Identities=36%  Similarity=0.563  Sum_probs=21.6

Q ss_pred             CeeeeecCCCCchhhHHHHHhCCCC
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKGELT  274 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g~~~  274 (356)
                      +.|++-|+-||||||+++.|...+.
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4688889999999999999987653

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.51  E-value=0.027  Score=44.87  Aligned_cols=22  Identities=45%  Similarity=0.613  Sum_probs=19.0

Q ss_pred             eeeeecCCCCchhhHHHHHhCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~  272 (356)
                      +|.++|+.||||||+.+.|+..
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5778899999999999998754

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=92.51  E-value=0.027  Score=46.34  Aligned_cols=23  Identities=30%  Similarity=0.615  Sum_probs=19.6

Q ss_pred             eeeeecCCCCchhhHHHHHhCCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      .|++-||.||||||..+.|+..+
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~l   27 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDF   27 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47788999999999999997643

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.50  E-value=0.029  Score=44.91  Aligned_cols=22  Identities=32%  Similarity=0.647  Sum_probs=19.6

Q ss_pred             eeeeecCCCCchhhHHHHHhCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~  272 (356)
                      +++++|+.|+|||||++.+.+.
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            5889999999999999988764

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.48  E-value=0.024  Score=44.75  Aligned_cols=21  Identities=24%  Similarity=0.513  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCCcchhhhhhcc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~g  228 (356)
                      .++|+|..|+|||||++.+..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998774

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.43  E-value=0.027  Score=44.90  Aligned_cols=23  Identities=39%  Similarity=0.378  Sum_probs=19.4

Q ss_pred             CCeeeeecCCCCchhhHHHHHhC
Q psy2684         249 ESRVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       249 ~~~ialvG~nG~GKsTll~~l~g  271 (356)
                      ...|-++|+.||||||+++.++.
T Consensus        14 p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          14 PEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45678889999999999988854

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.41  E-value=0.029  Score=44.82  Aligned_cols=22  Identities=41%  Similarity=0.647  Sum_probs=19.4

Q ss_pred             eeeeecCCCCchhhHHHHHhCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~  272 (356)
                      +|.++|+-||||||+.+.|+..
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6778899999999999999754

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=92.41  E-value=0.018  Score=48.91  Aligned_cols=22  Identities=32%  Similarity=0.422  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCcchhhhhhcccc
Q psy2684         209 VALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       209 ~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      +.+.||.|+|||++.+.++...
T Consensus        43 vLL~GppGtGKT~la~alA~~~   64 (246)
T d1d2na_          43 VLLEGPPHSGKTALAAKIAEES   64 (246)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHhhcc
Confidence            5789999999999999998763

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=92.37  E-value=0.025  Score=45.55  Aligned_cols=21  Identities=38%  Similarity=0.570  Sum_probs=18.4

Q ss_pred             eeeeecCCCCchhhHHHHHhC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g  271 (356)
                      .||+.|..||||||+.+.+..
T Consensus         5 IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999998854

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.33  E-value=0.03  Score=43.79  Aligned_cols=21  Identities=24%  Similarity=0.506  Sum_probs=18.4

Q ss_pred             eeeeecCCCCchhhHHHHHhC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g  271 (356)
                      +++++|+.|+|||||++.+..
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            588999999999999987664

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.33  E-value=0.024  Score=47.10  Aligned_cols=28  Identities=29%  Similarity=0.426  Sum_probs=22.7

Q ss_pred             eEEEEcCCCCCcchhhhhh-ccccccCCC
Q psy2684         208 RVALVGPNGIGKSTFLNLL-KGELTPNKG  235 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l-~gl~~p~~G  235 (356)
                      ++.|+|.+|+|||||++-+ .+-..|+-|
T Consensus         8 KilllG~~~vGKTsll~~~~~~~~~pTiG   36 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRILHVVLTSG   36 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence            5789999999999999865 444567777

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.30  E-value=0.026  Score=44.71  Aligned_cols=22  Identities=27%  Similarity=0.593  Sum_probs=19.1

Q ss_pred             eeeeecCCCCchhhHHHHHhCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~  272 (356)
                      ++.++|+.|+|||||++.+.+.
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            5889999999999999987653

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.30  E-value=0.021  Score=47.95  Aligned_cols=22  Identities=41%  Similarity=0.545  Sum_probs=19.6

Q ss_pred             EEEEcCCCCCcchhhhhhcccc
Q psy2684         209 VALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       209 ~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      +.|.||.|+||||++++++..+
T Consensus        36 lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          36 LLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhh
Confidence            6899999999999999988653

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.28  E-value=0.021  Score=47.31  Aligned_cols=23  Identities=39%  Similarity=0.544  Sum_probs=19.9

Q ss_pred             EEEEcCCCCCcchhhhhhccccc
Q psy2684         209 VALVGPNGIGKSTFLNLLKGELT  231 (356)
Q Consensus       209 ~~i~G~nGsGKSTll~~l~gl~~  231 (356)
                      +.+.||.|+||||++++++..+.
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l~   61 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHELL   61 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCchhhHHHHHHHHh
Confidence            67999999999999998876543

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.26  E-value=0.032  Score=43.87  Aligned_cols=22  Identities=36%  Similarity=0.605  Sum_probs=19.2

Q ss_pred             eeeeecCCCCchhhHHHHHhCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~  272 (356)
                      +++++|..|+|||||++.+.+.
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~~   25 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVKG   25 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6889999999999999887653

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.22  E-value=0.037  Score=47.64  Aligned_cols=37  Identities=19%  Similarity=0.379  Sum_probs=29.2

Q ss_pred             CccccccceeeecCCCeEEEEcCCCCCcchhhhhhccc
Q psy2684         192 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       192 ~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      +..+++-+ +.+-+|++.+|+|+.|+|||||+..++.-
T Consensus        55 GIraID~l-~pigkGQr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          55 GIKVVDLL-APYAKGGKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             Cceeeeee-ccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence            33344444 68999999999999999999998777643

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.16  E-value=0.022  Score=44.91  Aligned_cols=21  Identities=43%  Similarity=0.746  Sum_probs=18.2

Q ss_pred             eEEEEcCCCCCcchhhhhhcc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~g  228 (356)
                      .++|+|+.|+|||||++.+.+
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999996644

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.14  E-value=0.03  Score=43.84  Aligned_cols=22  Identities=32%  Similarity=0.659  Sum_probs=19.0

Q ss_pred             eeeeecCCCCchhhHHHHHhCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~  272 (356)
                      ++.++|..|+|||||++.+.+.
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5789999999999999987653

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.08  E-value=0.023  Score=44.92  Aligned_cols=21  Identities=29%  Similarity=0.515  Sum_probs=18.4

Q ss_pred             eEEEEcCCCCCcchhhhhhcc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~g  228 (356)
                      .+.++|..|+|||||++.+.+
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999997764

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.07  E-value=0.026  Score=45.41  Aligned_cols=28  Identities=39%  Similarity=0.648  Sum_probs=21.9

Q ss_pred             eEEEEcCCCCCcchhhhhhccc--cccCCC
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGE--LTPNKG  235 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl--~~p~~G  235 (356)
                      ++.|+|.+|+|||||++-+.-.  ..|+-|
T Consensus         4 KivllG~~~vGKTsll~r~~f~~~~~pTiG   33 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG   33 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence            4789999999999999988322  246666

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=92.01  E-value=0.033  Score=44.47  Aligned_cols=22  Identities=23%  Similarity=0.350  Sum_probs=20.2

Q ss_pred             eeeeecCCCCchhhHHHHHhCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~  272 (356)
                      .||++|.-.+|||||++.|.+.
T Consensus         7 nIaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEEeCCCCcHHHHHHHHHHh
Confidence            4899999999999999999874

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.95  E-value=0.024  Score=45.30  Aligned_cols=22  Identities=23%  Similarity=0.436  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCCcchhhhhhccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      .++++|..|+|||||++.+.+-
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5799999999999999966553

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.94  E-value=0.03  Score=43.97  Aligned_cols=21  Identities=24%  Similarity=0.436  Sum_probs=18.7

Q ss_pred             eeeeecCCCCchhhHHHHHhC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g  271 (356)
                      ++.++|..|+|||||++.+.+
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            688999999999999987764

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.94  E-value=0.027  Score=44.39  Aligned_cols=21  Identities=33%  Similarity=0.551  Sum_probs=18.6

Q ss_pred             eeeeecCCCCchhhHHHHHhC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g  271 (356)
                      ++.++|..|+|||||++.+.+
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            689999999999999987654

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.93  E-value=0.023  Score=48.70  Aligned_cols=28  Identities=25%  Similarity=0.440  Sum_probs=23.2

Q ss_pred             ecCCCeEEEEcCCCCCcchhhhhhcccc
Q psy2684         203 LDMESRVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       203 i~~ge~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      +....-+.|.||+|+|||+|++++++..
T Consensus        38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          38 MTPSKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CCCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CCCCCeEEEECCCCCcchhHHHHHHHHh
Confidence            3444558899999999999999999864

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=91.90  E-value=0.028  Score=47.06  Aligned_cols=20  Identities=25%  Similarity=0.325  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCCcchhhhhhc
Q psy2684         208 RVALVGPNGIGKSTFLNLLK  227 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~  227 (356)
                      ++||.|+-||||||+.+.|.
T Consensus         3 iIgiTG~igSGKsTva~~l~   22 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIM   22 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999984

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=91.88  E-value=0.034  Score=45.98  Aligned_cols=23  Identities=35%  Similarity=0.560  Sum_probs=18.3

Q ss_pred             CeeeeecCCCCchhhHHHHHhCC
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g~  272 (356)
                      ..++++||+|+||||.+--|+-.
T Consensus        10 ~vi~lvGptGvGKTTTiAKLA~~   32 (211)
T d2qy9a2          10 FVILMVGVNGVGKTTTIGKLARQ   32 (211)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            45889999999999987666643

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.87  E-value=0.025  Score=44.44  Aligned_cols=22  Identities=23%  Similarity=0.505  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCCcchhhhhhccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      .++|+|..|+|||||++.+..-
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999976543

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=91.87  E-value=0.025  Score=44.61  Aligned_cols=21  Identities=33%  Similarity=0.539  Sum_probs=18.5

Q ss_pred             eEEEEcCCCCCcchhhhhhcc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~g  228 (356)
                      ++.|+|..|+|||||++.+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            578999999999999998653

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.87  E-value=0.037  Score=43.42  Aligned_cols=21  Identities=33%  Similarity=0.627  Sum_probs=18.8

Q ss_pred             eeeeecCCCCchhhHHHHHhC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g  271 (356)
                      +++++|..|+|||||++.+..
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            689999999999999988764

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.82  E-value=0.027  Score=48.73  Aligned_cols=23  Identities=43%  Similarity=0.540  Sum_probs=21.3

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      +++|+||-++|||||++.|.|..
T Consensus        34 vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          34 VVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            69999999999999999999865

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=91.78  E-value=0.041  Score=45.34  Aligned_cols=23  Identities=35%  Similarity=0.226  Sum_probs=18.2

Q ss_pred             CeeeeecCCCCchhhHHHHHhCC
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g~  272 (356)
                      ..+.++||+|+||||.+--|+..
T Consensus        11 ~vi~lvGp~GvGKTTTiaKLA~~   33 (207)
T d1ls1a2          11 NLWFLVGLQGSGKTTTAAKLALY   33 (207)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            44788999999999987666643

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.75  E-value=0.026  Score=45.24  Aligned_cols=21  Identities=24%  Similarity=0.483  Sum_probs=18.2

Q ss_pred             eEEEEcCCCCCcchhhhhhcc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~g  228 (356)
                      +++|+|..|+|||||++.+..
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            479999999999999987653

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.74  E-value=0.032  Score=44.56  Aligned_cols=21  Identities=29%  Similarity=0.713  Sum_probs=18.6

Q ss_pred             eeeeecCCCCchhhHHHHHhC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g  271 (356)
                      +++++|..|+|||||++.+.+
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            588999999999999987764

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.73  E-value=0.036  Score=43.23  Aligned_cols=21  Identities=14%  Similarity=0.496  Sum_probs=18.8

Q ss_pred             eeeeecCCCCchhhHHHHHhC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g  271 (356)
                      +++++|..|+|||||++.+.+
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            578999999999999998875

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.72  E-value=0.041  Score=43.28  Aligned_cols=23  Identities=35%  Similarity=0.663  Sum_probs=19.9

Q ss_pred             eeeeecCCCCchhhHHHHHhCCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      +++++|+.|+|||||++.+.+..
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~~   25 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGVE   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCcCHHHHHHHHhCCc
Confidence            57899999999999999988753

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.72  E-value=0.036  Score=46.00  Aligned_cols=21  Identities=38%  Similarity=0.604  Sum_probs=17.8

Q ss_pred             eeeecCCCCchhhHHHHHhCC
Q psy2684         252 VALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       252 ialvG~nG~GKsTll~~l~g~  272 (356)
                      +-+.||+|+||||++++++..
T Consensus        48 lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          48 LLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             EEEESCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            456699999999999999764

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=91.70  E-value=0.03  Score=45.35  Aligned_cols=22  Identities=32%  Similarity=0.504  Sum_probs=19.9

Q ss_pred             EEEEcCCCCCcchhhhhhcccc
Q psy2684         209 VALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       209 ~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      +||+|.-.+|||||++.|.|..
T Consensus         8 IaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEeccCCcHHHHHHHHHhhh
Confidence            6999999999999999998853

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=91.66  E-value=0.4  Score=39.58  Aligned_cols=58  Identities=19%  Similarity=0.034  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH----HHHHHHHHhcCcEEEEEecChhHHh
Q psy2684          12 GWRIRVSLARALFLEPTLLLLDEPTNHLDLNAV----IWLDNYLQTWKKTLLVVSHDQSFLN   69 (356)
Q Consensus        12 Ge~~r~~la~~l~~~p~~llLDEPt~~LD~~~~----~~l~~~l~~~~~tvi~vsHd~~~l~   69 (356)
                      .|.+++.-.--.+.+..++|+||+..+=|+...    ..+.+.|.+.+..++++||..++..
T Consensus       100 ~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~  161 (224)
T d1ewqa2         100 VEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA  161 (224)
T ss_dssp             HHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred             HhHHHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence            556666555555667789999999999998653    2244555556788999999977654

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=91.65  E-value=0.023  Score=52.57  Aligned_cols=23  Identities=26%  Similarity=0.582  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      -+.++||+|||||-|.+.|++++
T Consensus        51 NILliGPTGvGKTlLAr~LAk~l   73 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAKLA   73 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHh
Confidence            36899999999999999999976

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=91.63  E-value=0.036  Score=44.45  Aligned_cols=23  Identities=39%  Similarity=0.393  Sum_probs=19.1

Q ss_pred             CCCeEEEEcCCCCCcchhhhhhc
Q psy2684         205 MESRVALVGPNGIGKSTFLNLLK  227 (356)
Q Consensus       205 ~ge~~~i~G~nGsGKSTll~~l~  227 (356)
                      .|.-+.|.|++|+||||+...+.
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~   36 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLI   36 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHH
Confidence            45668999999999999987654

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=91.63  E-value=0.058  Score=47.59  Aligned_cols=32  Identities=19%  Similarity=0.362  Sum_probs=26.2

Q ss_pred             cCCeeeeecCCCCchhhHHHHHhCCCCCCcce
Q psy2684         248 MESRVALVGPNGIGKSTFLNLLKGELTPNKGE  279 (356)
Q Consensus       248 ~~~~ialvG~nG~GKsTll~~l~g~~~~~~g~  279 (356)
                      .+..+.+.|+-||||||+++++++.+++...-
T Consensus       165 ~~~nili~G~tgSGKTT~l~al~~~i~~~~ri  196 (323)
T d1g6oa_         165 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERI  196 (323)
T ss_dssp             HTCCEEEEESTTSSHHHHHHHHGGGSCTTCCE
T ss_pred             hCCCEEEEeeccccchHHHHHHhhhcccccce
Confidence            34567888999999999999999988775443

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=91.62  E-value=0.035  Score=49.19  Aligned_cols=22  Identities=41%  Similarity=0.620  Sum_probs=19.5

Q ss_pred             CeeeeecCCCCchhhHHHHHhC
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g  271 (356)
                      -+||++|+.|+|||||+..+..
T Consensus        55 ~~IgitG~pGaGKSTLi~~l~~   76 (327)
T d2p67a1          55 LRLGVTGTPGAGKSTFLEAFGM   76 (327)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEeeCCCCCCHHHHHHHHHH
Confidence            4689999999999999998864

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=91.61  E-value=0.035  Score=51.26  Aligned_cols=46  Identities=15%  Similarity=0.297  Sum_probs=28.5

Q ss_pred             CeeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCc
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHS  295 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~  295 (356)
                      +.|.++||.|||||.|++.|++.+..---.+........||+-.+.
T Consensus        50 sNILliGPTGvGKTlLAr~LAk~l~VPFv~~daT~fTeaGYvG~DV   95 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEV   95 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCT
T ss_pred             ccEEEECCCCCCHHHHHHHHHHHhCCCEEEeecceeeecceeecch
Confidence            4678899999999999999998764321111122234578888775

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=91.57  E-value=0.038  Score=45.16  Aligned_cols=23  Identities=30%  Similarity=0.593  Sum_probs=19.6

Q ss_pred             eeeeecCCCCchhhHHHHHhCCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      .|++.||.||||+|+.+.|+..+
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~   27 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEAL   27 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57888999999999999997543

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.57  E-value=0.035  Score=43.53  Aligned_cols=22  Identities=27%  Similarity=0.528  Sum_probs=19.4

Q ss_pred             eeeeecCCCCchhhHHHHHhCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~  272 (356)
                      ++.++|+.|+|||||++.+.+.
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            6899999999999999888654

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.57  E-value=0.032  Score=43.73  Aligned_cols=22  Identities=23%  Similarity=0.443  Sum_probs=19.5

Q ss_pred             CeeeeecCCCCchhhHHHHHhC
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g  271 (356)
                      .+|+++|+.|+|||||++.+.+
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4789999999999999998764

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.53  E-value=0.043  Score=44.27  Aligned_cols=24  Identities=25%  Similarity=0.300  Sum_probs=20.4

Q ss_pred             CCeeeeecCCCCchhhHHHHHhCC
Q psy2684         249 ESRVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       249 ~~~ialvG~nG~GKsTll~~l~g~  272 (356)
                      ...|.++||.||||||+.+.|+..
T Consensus         8 ~~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           8 SKIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            456788999999999999999764

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=91.41  E-value=0.037  Score=47.40  Aligned_cols=39  Identities=23%  Similarity=0.377  Sum_probs=29.2

Q ss_pred             eecCCCeEEEEcCCCCCcchhhhhhccccccCCCc-eeEe
Q psy2684         202 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGK-VLLE  240 (356)
Q Consensus       202 ~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~-i~~~  240 (356)
                      -++.|.++-|.||+|||||||+-.++....-..+. ++++
T Consensus        50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyid   89 (263)
T d1u94a1          50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID   89 (263)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEc
Confidence            46789999999999999999987666555444444 4444

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.40  E-value=0.031  Score=44.65  Aligned_cols=21  Identities=24%  Similarity=0.591  Sum_probs=17.8

Q ss_pred             eEEEEcCCCCCcchhhhhhcc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~g  228 (356)
                      ++.++|.+|+|||||++.+..
T Consensus         4 KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999985544

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.39  E-value=0.037  Score=43.31  Aligned_cols=22  Identities=27%  Similarity=0.602  Sum_probs=19.1

Q ss_pred             eeeeecCCCCchhhHHHHHhCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~  272 (356)
                      ++.++|+.|+|||||++.+.+.
T Consensus         6 KivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5889999999999999887653

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=91.34  E-value=0.031  Score=47.44  Aligned_cols=22  Identities=45%  Similarity=0.816  Sum_probs=20.0

Q ss_pred             EEEEcCCCCCcchhhhhhcccc
Q psy2684         209 VALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       209 ~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      +.+.||.|+|||++.+.++...
T Consensus        45 iLl~GppGtGKT~la~aia~~~   66 (247)
T d1ixza_          45 VLLVGPPGVGKTHLARAVAGEA   66 (247)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEecCCCCChhHHHHHHHHHc
Confidence            6799999999999999999764

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=91.31  E-value=0.042  Score=45.73  Aligned_cols=24  Identities=42%  Similarity=0.807  Sum_probs=19.9

Q ss_pred             eeeecCCCCchhhHHHHHhCCCCC
Q psy2684         252 VALVGPNGIGKSTFLNLLKGELTP  275 (356)
Q Consensus       252 ialvG~nG~GKsTll~~l~g~~~~  275 (356)
                      +-+.||.|+||||++++++..+..
T Consensus        38 ~L~~GPpGtGKT~lA~~la~~~~~   61 (238)
T d1in4a2          38 VLLAGPPGLGKTTLAHIIASELQT   61 (238)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCcHHHHHHHHHhccCC
Confidence            556699999999999999876543

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=91.27  E-value=0.034  Score=44.28  Aligned_cols=24  Identities=38%  Similarity=0.562  Sum_probs=20.6

Q ss_pred             CCeeeeecCCCCchhhHHHHHhCC
Q psy2684         249 ESRVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       249 ~~~ialvG~nG~GKsTll~~l~g~  272 (356)
                      .-++.++|+.|+|||||++.+.+.
T Consensus        17 ~~KI~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_          17 ELRILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            446899999999999999988764

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.23  E-value=0.032  Score=46.14  Aligned_cols=22  Identities=32%  Similarity=0.603  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCcchhhhhhcccc
Q psy2684         209 VALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       209 ~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      +.+.||.|+||||++++++..+
T Consensus        38 lLl~Gp~G~GKttl~~~la~~l   59 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAREI   59 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHHh
Confidence            6799999999999999998754

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=91.21  E-value=0.043  Score=44.83  Aligned_cols=21  Identities=43%  Similarity=0.574  Sum_probs=18.4

Q ss_pred             eeeeecCCCCchhhHHHHHhC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g  271 (356)
                      .||++|..||||||+.+.+..
T Consensus         4 iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999998853

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=91.16  E-value=0.041  Score=45.45  Aligned_cols=23  Identities=35%  Similarity=0.361  Sum_probs=14.2

Q ss_pred             CCeeeeecCCCCchhhHHHHHhC
Q psy2684         249 ESRVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       249 ~~~ialvG~nG~GKsTll~~l~g  271 (356)
                      ...++++||+|+||||.+--|+-
T Consensus        12 p~vi~lvGptGvGKTTTiAKLA~   34 (211)
T d1j8yf2          12 PYVIMLVGVQGTGKATTAGKLAY   34 (211)
T ss_dssp             SEEEEEECSCCC----HHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34588999999999998765553

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=91.15  E-value=0.048  Score=47.74  Aligned_cols=24  Identities=25%  Similarity=0.559  Sum_probs=20.1

Q ss_pred             CeeeeecCCCCchhhHHHHHhCCC
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      ..+.++||.|||||+++++++...
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~~   73 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKLA   73 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhhcc
Confidence            345677999999999999998754

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=91.15  E-value=0.035  Score=44.52  Aligned_cols=23  Identities=30%  Similarity=0.326  Sum_probs=18.6

Q ss_pred             CCCeEEEEcCCCCCcchhhhhhc
Q psy2684         205 MESRVALVGPNGIGKSTFLNLLK  227 (356)
Q Consensus       205 ~ge~~~i~G~nGsGKSTll~~l~  227 (356)
                      .|.=+.|.|++|+||||+.-.+.
T Consensus        13 ~g~gvl~~G~sG~GKStlal~l~   35 (176)
T d1kkma_          13 YGLGVLITGDSGVGKSETALELV   35 (176)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHH
Confidence            35558999999999999886544

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.14  E-value=0.045  Score=43.07  Aligned_cols=22  Identities=23%  Similarity=0.623  Sum_probs=19.4

Q ss_pred             eeeeecCCCCchhhHHHHHhCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~  272 (356)
                      ++.++|+.|+|||||++.+.+.
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            6889999999999999988753

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.11  E-value=0.054  Score=49.27  Aligned_cols=23  Identities=48%  Similarity=0.743  Sum_probs=21.0

Q ss_pred             eeeeecCCCCchhhHHHHHhCCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      +||++|..|+|||||++.|.|.-
T Consensus        58 ~Iai~G~~n~GKSSLiNaL~G~~   80 (400)
T d1tq4a_          58 NVAVTGETGSGKSSFINTLRGIG   80 (400)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999853

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.07  E-value=0.031  Score=45.01  Aligned_cols=21  Identities=24%  Similarity=0.458  Sum_probs=18.0

Q ss_pred             eEEEEcCCCCCcchhhhhhcc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~g  228 (356)
                      .++|+|..|+|||||++.+.+
T Consensus         5 KvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999986654

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.02  E-value=0.043  Score=43.52  Aligned_cols=22  Identities=27%  Similarity=0.703  Sum_probs=19.5

Q ss_pred             eeeeecCCCCchhhHHHHHhCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~  272 (356)
                      ++.++|..|+|||||++.+.+.
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5889999999999999988753

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.00  E-value=0.041  Score=43.57  Aligned_cols=23  Identities=22%  Similarity=0.452  Sum_probs=19.7

Q ss_pred             CeeeeecCCCCchhhHHHHHhCC
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g~  272 (356)
                      .++.++|+.|+|||||++.+...
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            46889999999999999877654

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=91.00  E-value=0.041  Score=46.79  Aligned_cols=24  Identities=38%  Similarity=0.376  Sum_probs=20.8

Q ss_pred             cCCCeEEEEcCCCCCcchhhhhhc
Q psy2684         204 DMESRVALVGPNGIGKSTFLNLLK  227 (356)
Q Consensus       204 ~~ge~~~i~G~nGsGKSTll~~l~  227 (356)
                      .+|+++.|.|+.|+|||||+-.++
T Consensus        27 ~pg~~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          27 VAGTVGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             cCCcEEEEEeCCCCCHHHHHHHHH
Confidence            359999999999999999987654

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.97  E-value=0.053  Score=42.76  Aligned_cols=23  Identities=48%  Similarity=0.842  Sum_probs=20.1

Q ss_pred             eeeeecCCCCchhhHHHHHhCCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      ++.++|+.|+|||||++.+.+..
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~~~   27 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAGVH   27 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCc
Confidence            57899999999999999887753

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=90.96  E-value=0.027  Score=49.75  Aligned_cols=26  Identities=35%  Similarity=0.433  Sum_probs=22.6

Q ss_pred             CeEEEEcCCCCCcchhhhhhcccccc
Q psy2684         207 SRVALVGPNGIGKSTFLNLLKGELTP  232 (356)
Q Consensus       207 e~~~i~G~nGsGKSTll~~l~gl~~p  232 (356)
                      --+.|+||.|+|||||++.++++++|
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~iLp~   54 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAALLPE   54 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred             CeEEEECCCCccHHHHHHHHHHhCCC
Confidence            35789999999999999999988754

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.91  E-value=0.044  Score=43.00  Aligned_cols=21  Identities=24%  Similarity=0.502  Sum_probs=18.4

Q ss_pred             eeeeecCCCCchhhHHHHHhC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g  271 (356)
                      +++++|+.|+|||||++.+.+
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            688999999999999987654

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.87  E-value=0.049  Score=45.63  Aligned_cols=22  Identities=50%  Similarity=0.753  Sum_probs=18.7

Q ss_pred             eeeecCCCCchhhHHHHHhCCC
Q psy2684         252 VALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       252 ialvG~nG~GKsTll~~l~g~~  273 (356)
                      +-+.||.|+||||++++++...
T Consensus        55 lll~GPpG~GKTt~a~~la~~~   76 (253)
T d1sxja2          55 AMLYGPPGIGKTTAAHLVAQEL   76 (253)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            4566999999999999998754

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.83  E-value=0.044  Score=47.06  Aligned_cols=40  Identities=20%  Similarity=0.307  Sum_probs=30.6

Q ss_pred             eecCCCeEEEEcCCCCCcchhhhhhccccccCCCcee-Eee
Q psy2684         202 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVL-LEK  241 (356)
Q Consensus       202 ~i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~-~~g  241 (356)
                      -++.|.++-|.||+|+|||||+-.++....-..|.+. ++.
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDt   96 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDA   96 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEEC
Confidence            4688999999999999999998666665555556644 443

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=90.78  E-value=0.055  Score=44.17  Aligned_cols=24  Identities=25%  Similarity=0.386  Sum_probs=19.8

Q ss_pred             CCeeeeecCCCCchhhHHHHHhCC
Q psy2684         249 ESRVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       249 ~~~ialvG~nG~GKsTll~~l~g~  272 (356)
                      +..|++-|+.||||||+++.|...
T Consensus         2 gkfIviEG~dGsGKsT~~~~L~~~   25 (210)
T d4tmka_           2 SKYIVIEGLEGAGKTTARNVVVET   25 (210)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            456778899999999999988754

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.77  E-value=0.055  Score=42.09  Aligned_cols=21  Identities=14%  Similarity=0.442  Sum_probs=18.5

Q ss_pred             eeeeecCCCCchhhHHHHHhC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g  271 (356)
                      ++.++|+.|+|||||++.+..
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            578999999999999987764

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=90.74  E-value=0.037  Score=48.16  Aligned_cols=24  Identities=29%  Similarity=0.468  Sum_probs=21.8

Q ss_pred             eEEEEcCCCCCcchhhhhhccccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGELT  231 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~~  231 (356)
                      .++|+|.-.||||||+++|.|.--
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~~   49 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRDF   49 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             eEEEEeCCCCCHHHHHHHHhCCCC
Confidence            479999999999999999999763

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=90.60  E-value=0.051  Score=47.60  Aligned_cols=39  Identities=21%  Similarity=0.296  Sum_probs=27.0

Q ss_pred             eeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCc
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHS  295 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~  295 (356)
                      .||+.|+.||||||+.+.|...+....      ...++..+.+|.
T Consensus        82 iIGIaG~sgSGKSTla~~L~~lL~~~~------~~~~v~~Is~D~  120 (308)
T d1sq5a_          82 IISIAGSVAVGKSTTARVLQALLSRWP------EHRRVELITTDG  120 (308)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHTTST------TCCCEEEEEGGG
T ss_pred             EEEEeCCCCCCCcHHHHHHHHHHhhhc------CCCceEEEeeee
Confidence            468889999999999988876543211      123467777764

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.59  E-value=0.062  Score=44.15  Aligned_cols=25  Identities=32%  Similarity=0.296  Sum_probs=20.4

Q ss_pred             CCeeeeecCCCCchhhHHHHHhCCC
Q psy2684         249 ESRVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       249 ~~~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      |..|++-|+.||||||+++.|...+
T Consensus         3 G~lI~ieG~dGsGKsT~~~~L~~~L   27 (209)
T d1nn5a_           3 GALIVLEGVDRAGKSTQSRKLVEAL   27 (209)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4567888999999999998886643

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.58  E-value=0.04  Score=47.70  Aligned_cols=23  Identities=35%  Similarity=0.527  Sum_probs=21.3

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      .++|+|.-.||||||+++|.|.-
T Consensus        28 ~ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             eEEEEcCCCCCHHHHHHHHhCCC
Confidence            48999999999999999999976

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.55  E-value=0.054  Score=42.73  Aligned_cols=21  Identities=29%  Similarity=0.520  Sum_probs=18.6

Q ss_pred             eeeeecCCCCchhhHHHHHhC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g  271 (356)
                      +|.++|..|+|||||++.+..
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            689999999999999987664

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.45  E-value=0.046  Score=43.10  Aligned_cols=22  Identities=36%  Similarity=0.601  Sum_probs=18.2

Q ss_pred             eeeeecCCCCchhhHHHHHhCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~  272 (356)
                      +++++|+.|+|||||++.+...
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC--
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5889999999999999887653

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.42  E-value=0.057  Score=44.63  Aligned_cols=21  Identities=33%  Similarity=0.578  Sum_probs=17.6

Q ss_pred             eeeecCCCCchhhHHHHHhCC
Q psy2684         252 VALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       252 ialvG~nG~GKsTll~~l~g~  272 (356)
                      +-+.||+|+||||++++++..
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHH
Confidence            445699999999999999864

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.31  E-value=0.064  Score=44.15  Aligned_cols=26  Identities=27%  Similarity=0.349  Sum_probs=21.6

Q ss_pred             CCeeeeecCCCCchhhHHHHHhCCCC
Q psy2684         249 ESRVALVGPNGIGKSTFLNLLKGELT  274 (356)
Q Consensus       249 ~~~ialvG~nG~GKsTll~~l~g~~~  274 (356)
                      |..|++-|..||||||+++.|...+.
T Consensus         3 Gk~I~iEG~DGsGKST~~~~L~~~L~   28 (214)
T d1tmka_           3 GKLILIEGLDRTGKTTQCNILYKKLQ   28 (214)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            55678889999999999999986654

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.30  E-value=0.065  Score=42.03  Aligned_cols=21  Identities=24%  Similarity=0.513  Sum_probs=18.8

Q ss_pred             eeeeecCCCCchhhHHHHHhC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g  271 (356)
                      ++.++|+.|+|||||++.+..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            688999999999999988774

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.27  E-value=0.05  Score=46.27  Aligned_cols=21  Identities=33%  Similarity=0.610  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCcchhhhhhccc
Q psy2684         209 VALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       209 ~~i~G~nGsGKSTll~~l~gl  229 (356)
                      +.+.||.|+|||++++.++..
T Consensus        41 iLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          41 ILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEecCCCCCchHHHHHHHHH
Confidence            679999999999999999984

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.25  E-value=0.06  Score=42.36  Aligned_cols=21  Identities=29%  Similarity=0.542  Sum_probs=18.7

Q ss_pred             eeeeecCCCCchhhHHHHHhC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g  271 (356)
                      +++++|..|+|||||++.+.+
T Consensus         7 KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999987764

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=90.22  E-value=0.05  Score=42.84  Aligned_cols=24  Identities=33%  Similarity=0.441  Sum_probs=20.5

Q ss_pred             CeeeeecCCCCchhhHHHHHhCCC
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      -++.++|+.|+|||||++.+....
T Consensus        13 ~kIvlvG~~~vGKTSli~rl~~~~   36 (173)
T d1e0sa_          13 MRILMLGLDAAGKTTILYKLKLGQ   36 (173)
T ss_dssp             EEEEEEEETTSSHHHHHHHTTCCC
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCC
Confidence            368899999999999999987643

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=90.22  E-value=0.051  Score=46.60  Aligned_cols=37  Identities=16%  Similarity=0.251  Sum_probs=29.8

Q ss_pred             ecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeE
Q psy2684         203 LDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLL  239 (356)
Q Consensus       203 i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~  239 (356)
                      ++.|.++-|.||+|||||||.-.++....-..|.+.|
T Consensus        54 ip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~y   90 (268)
T d1xp8a1          54 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAF   90 (268)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             ccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEE
Confidence            6789999999999999999998777766555565544

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=89.99  E-value=0.064  Score=43.88  Aligned_cols=21  Identities=48%  Similarity=0.510  Sum_probs=18.6

Q ss_pred             eeeeecCCCCchhhHHHHHhC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g  271 (356)
                      .||++|..||||||..+++..
T Consensus         5 iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHHH
Confidence            578999999999999998863

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.95  E-value=0.066  Score=43.30  Aligned_cols=22  Identities=36%  Similarity=0.706  Sum_probs=18.3

Q ss_pred             eeeecCCCCchhhHHHHHhCCC
Q psy2684         252 VALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       252 ialvG~nG~GKsTll~~l~g~~  273 (356)
                      |++-|.-||||||+++.|...+
T Consensus         3 I~ieG~dGsGKST~~~~L~~~l   24 (208)
T d1gsia_           3 IAIEGVDGAGKRTLVEKLSGAF   24 (208)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6677999999999999887543

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.93  E-value=0.071  Score=42.36  Aligned_cols=22  Identities=23%  Similarity=0.451  Sum_probs=19.0

Q ss_pred             eeeeecCCCCchhhHHHHHhCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~  272 (356)
                      ++.++|..|+|||||++.+...
T Consensus         7 KivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999876653

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.90  E-value=0.073  Score=41.57  Aligned_cols=22  Identities=23%  Similarity=0.505  Sum_probs=18.9

Q ss_pred             eeeeecCCCCchhhHHHHHhCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~  272 (356)
                      ++.++|..|+|||+|++.+...
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5889999999999999877543

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.84  E-value=0.067  Score=43.07  Aligned_cols=21  Identities=33%  Similarity=0.654  Sum_probs=18.7

Q ss_pred             eeeeecCCCCchhhHHHHHhC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g  271 (356)
                      +++++|+.|+|||||++.+.+
T Consensus         8 KivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           8 KLLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhh
Confidence            589999999999999997765

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=89.80  E-value=0.057  Score=44.90  Aligned_cols=23  Identities=39%  Similarity=0.785  Sum_probs=19.2

Q ss_pred             eeeeecCCCCchhhHHHHHhCCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      .+-+.||.|+||||+++++++..
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~~~   59 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAHEL   59 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            35566999999999999998754

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.63  E-value=0.078  Score=41.52  Aligned_cols=21  Identities=29%  Similarity=0.567  Sum_probs=18.6

Q ss_pred             eeeeecCCCCchhhHHHHHhC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g  271 (356)
                      ++.++|+.|+|||+|++.+..
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            578999999999999987765

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=89.59  E-value=0.087  Score=44.75  Aligned_cols=24  Identities=38%  Similarity=0.675  Sum_probs=20.3

Q ss_pred             CeeeeecCCCCchhhHHHHHhCCC
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      ..+.+.||.|||||+++++++..+
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~~~   69 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAGEA   69 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHHHc
Confidence            456777999999999999998754

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=89.59  E-value=0.037  Score=46.76  Aligned_cols=22  Identities=27%  Similarity=0.456  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCcchhhhhhcccc
Q psy2684         209 VALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       209 ~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      +.|.||.|+||||+++.++..+
T Consensus        49 l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHHH
Confidence            4567999999999999998765

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.56  E-value=0.08  Score=41.44  Aligned_cols=21  Identities=43%  Similarity=0.746  Sum_probs=18.3

Q ss_pred             eeeeecCCCCchhhHHHHHhC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g  271 (356)
                      +++++|+.|+|||||++.+..
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999987644

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=89.50  E-value=0.053  Score=46.46  Aligned_cols=19  Identities=53%  Similarity=0.690  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCcchhhhhhc
Q psy2684         209 VALVGPNGIGKSTFLNLLK  227 (356)
Q Consensus       209 ~~i~G~nGsGKSTll~~l~  227 (356)
                      ++|+|+.|+|||||+..|.
T Consensus         5 v~iiGh~~~GKTtL~e~ll   23 (267)
T d2dy1a2           5 VALVGHAGSGKTTLTEALL   23 (267)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCcHHHHHHHHH
Confidence            6999999999999999883

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.45  E-value=0.055  Score=42.64  Aligned_cols=22  Identities=27%  Similarity=0.614  Sum_probs=9.1

Q ss_pred             eeeeecCCCCchhhHHHHHhCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~  272 (356)
                      +|.++|..|+|||||++.+.+.
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSED   29 (173)
T ss_dssp             EEEEECCCCC------------
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5889999999999999877753

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.39  E-value=0.071  Score=44.47  Aligned_cols=21  Identities=43%  Similarity=0.526  Sum_probs=17.9

Q ss_pred             eeeecCCCCchhhHHHHHhCC
Q psy2684         252 VALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       252 ialvG~nG~GKsTll~~l~g~  272 (356)
                      +-+.||.|+||||+++.++..
T Consensus        36 lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          36 LLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             EEEECSTTSSHHHHHHTHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            556799999999999998764

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=89.30  E-value=0.062  Score=43.97  Aligned_cols=20  Identities=30%  Similarity=0.335  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCcchhhhhhcc
Q psy2684         209 VALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       209 ~~i~G~nGsGKSTll~~l~g  228 (356)
                      ++|+|+-++|||||+..|..
T Consensus         6 i~iiGhvd~GKSTL~~~Ll~   25 (204)
T d2c78a3           6 VGTIGHVDHGKTTLTAALTY   25 (204)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHH
Confidence            79999999999999999853

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.25  E-value=0.073  Score=41.79  Aligned_cols=21  Identities=29%  Similarity=0.515  Sum_probs=18.6

Q ss_pred             eeeeecCCCCchhhHHHHHhC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g  271 (356)
                      ++.++|+.|+|||||++.+.+
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            678999999999999987765

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=89.25  E-value=0.06  Score=46.59  Aligned_cols=37  Identities=14%  Similarity=0.280  Sum_probs=23.1

Q ss_pred             eeeeecCCCCchhhHHHHHhCCCCCCcceeEeCCCceEEEeecCc
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHS  295 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~~~~~g~~~~~~~~~ig~~~Q~~  295 (356)
                      .||+.|++||||||+.+.+...+...        ..++..+.++.
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~~~~--------~v~~~iI~~Ds   42 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIFRRE--------GVKAVSIEGDA   42 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHHHH--------TCCEEEEEGGG
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhc--------CCCeEEEeCCC
Confidence            58999999999999998876543211        12456777765

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.17  E-value=0.08  Score=42.21  Aligned_cols=21  Identities=24%  Similarity=0.483  Sum_probs=18.4

Q ss_pred             eeeeecCCCCchhhHHHHHhC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g  271 (356)
                      ++.++|..|+|||||++.+..
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            589999999999999987654

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.17  E-value=0.075  Score=42.19  Aligned_cols=23  Identities=22%  Similarity=0.387  Sum_probs=19.6

Q ss_pred             CeeeeecCCCCchhhHHHHHhCC
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g~  272 (356)
                      -+++++|+.|+|||||++.+.+.
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            47899999999999999876653

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=89.15  E-value=0.057  Score=47.24  Aligned_cols=23  Identities=30%  Similarity=0.430  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      .+||+|..-+|||||+++|+|..
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~~   24 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLVD   24 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC--
T ss_pred             cEeEECCCCCCHHHHHHHHHCCC
Confidence            47999999999999999999863

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=89.07  E-value=0.083  Score=44.54  Aligned_cols=23  Identities=30%  Similarity=0.401  Sum_probs=19.6

Q ss_pred             eeeeecCCCCchhhHHHHHhCCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      .+.+.||.|||||++++.++...
T Consensus        42 ~vLL~GppGtGKT~la~alA~~~   64 (246)
T d1d2na_          42 SVLLEGPPHSGKTALAAKIAEES   64 (246)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhhcc
Confidence            46677999999999999998753

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.05  E-value=0.066  Score=42.70  Aligned_cols=22  Identities=32%  Similarity=0.537  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCCcchhhhhhccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      .+.|+|..|+|||||++.+..-
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999987543

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.04  E-value=0.062  Score=44.66  Aligned_cols=23  Identities=39%  Similarity=0.667  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      +++|=|+-||||||+++.|.--+
T Consensus         4 ~IviEG~~GsGKST~~~~L~~~l   26 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Confidence            68899999999999999998654

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=88.97  E-value=0.076  Score=44.06  Aligned_cols=22  Identities=32%  Similarity=0.596  Sum_probs=19.7

Q ss_pred             eeeeecCCCCchhhHHHHHhCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~  272 (356)
                      .||++|.-.+|||||++.|++.
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHhh
Confidence            3899999999999999999763

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.97  E-value=0.072  Score=44.18  Aligned_cols=22  Identities=36%  Similarity=0.445  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCCcchhhhhhccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      ++.|.|.=|||||||++-+...
T Consensus         5 v~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc
Confidence            5789999999999999987653

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=88.95  E-value=0.094  Score=41.04  Aligned_cols=21  Identities=33%  Similarity=0.539  Sum_probs=18.6

Q ss_pred             eeeeecCCCCchhhHHHHHhC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g  271 (356)
                      ++.++|+.|+|||||++.+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            688999999999999988654

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.89  E-value=0.087  Score=41.79  Aligned_cols=21  Identities=24%  Similarity=0.591  Sum_probs=18.0

Q ss_pred             eeeeecCCCCchhhHHHHHhC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g  271 (356)
                      ++.++|..|+|||+|++.+..
T Consensus         4 KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            678999999999999976654

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=88.87  E-value=0.067  Score=46.93  Aligned_cols=24  Identities=29%  Similarity=0.519  Sum_probs=21.3

Q ss_pred             eEEEEcCCCCCcchhhhhhccccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGELT  231 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~~  231 (356)
                      .+.++||+|+|||.|.+.|+..+.
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~l~   77 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKALG   77 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCcchhHHHHHHHHhhcc
Confidence            468999999999999999998763

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=88.80  E-value=0.061  Score=46.32  Aligned_cols=19  Identities=16%  Similarity=0.214  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCcchhhhhhc
Q psy2684         209 VALVGPNGIGKSTFLNLLK  227 (356)
Q Consensus       209 ~~i~G~nGsGKSTll~~l~  227 (356)
                      ++|+|+.|||||||+..|.
T Consensus         9 i~i~gh~~~GKTtL~e~ll   27 (276)
T d2bv3a2           9 IGIAAHIDAGKTTTTERIL   27 (276)
T ss_dssp             EEEEECTTSCHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            7999999999999999883

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=88.71  E-value=0.085  Score=41.85  Aligned_cols=23  Identities=35%  Similarity=0.349  Sum_probs=18.3

Q ss_pred             CCCeEEEEcCCCCCcchhhhhhc
Q psy2684         205 MESRVALVGPNGIGKSTFLNLLK  227 (356)
Q Consensus       205 ~ge~~~i~G~nGsGKSTll~~l~  227 (356)
                      .|.=+.|.|++|+||||+.-.+.
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~   36 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELI   36 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHH
Confidence            45568999999999999875443

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.59  E-value=0.095  Score=43.08  Aligned_cols=21  Identities=38%  Similarity=0.553  Sum_probs=17.2

Q ss_pred             eeeecCCCCchhhHHHHHhCC
Q psy2684         252 VALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       252 ialvG~nG~GKsTll~~l~g~  272 (356)
                      +-+.||.|+||||++++++..
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCchhhHHHHHHH
Confidence            455699999999999988653

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=88.50  E-value=0.072  Score=47.73  Aligned_cols=30  Identities=20%  Similarity=0.172  Sum_probs=27.0

Q ss_pred             eecCCCeEEEEcCCCCCcchhhhhhccccc
Q psy2684         202 GLDMESRVALVGPNGIGKSTFLNLLKGELT  231 (356)
Q Consensus       202 ~i~~ge~~~i~G~nGsGKSTll~~l~gl~~  231 (356)
                      .++++..+.+.||.|+||||+.++|++.+.
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            567888999999999999999999999865

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=88.48  E-value=0.096  Score=45.35  Aligned_cols=23  Identities=30%  Similarity=0.520  Sum_probs=21.4

Q ss_pred             eeeeecCCCCchhhHHHHHhCCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      +++++|.-++|||||+++|+|.-
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEeCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999965

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=88.45  E-value=0.083  Score=43.02  Aligned_cols=22  Identities=27%  Similarity=0.504  Sum_probs=19.9

Q ss_pred             EEEEcCCCCCcchhhhhhcccc
Q psy2684         209 VALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       209 ~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      ++|+|.-.+|||||++.|.|..
T Consensus        11 i~iiGhVd~GKSTL~~~L~~~~   32 (205)
T d2qn6a3          11 IGVVGHVDHGKTTLVQAITGIW   32 (205)
T ss_dssp             EEEECSTTSSHHHHHHHHHSCC
T ss_pred             EEEEEccCCcHHHHHHHHHhhh
Confidence            7999999999999999998744

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.42  E-value=0.1  Score=41.63  Aligned_cols=19  Identities=42%  Similarity=0.747  Sum_probs=17.2

Q ss_pred             eeeeecCCCCchhhHHHHH
Q psy2684         251 RVALVGPNGIGKSTFLNLL  269 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l  269 (356)
                      ++.++|..|+|||||++.+
T Consensus         4 KivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5789999999999999877

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.39  E-value=0.1  Score=43.00  Aligned_cols=29  Identities=28%  Similarity=0.409  Sum_probs=21.1

Q ss_pred             CeeeeecCCCCchhhHHHHH-hCCCCCCcc
Q psy2684         250 SRVALVGPNGIGKSTFLNLL-KGELTPNKG  278 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l-~g~~~~~~g  278 (356)
                      -++.++|..|+|||||++.+ .+...|+-|
T Consensus         7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG   36 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRILHVVLTSG   36 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence            46889999999999999766 333344433

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=88.34  E-value=0.1  Score=43.54  Aligned_cols=23  Identities=17%  Similarity=0.265  Sum_probs=19.1

Q ss_pred             CCeeeeecCCCCchhhHHHHHhC
Q psy2684         249 ESRVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       249 ~~~ialvG~nG~GKsTll~~l~g  271 (356)
                      +..+.+.|+.|+|||||++.++.
T Consensus        29 ~~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          29 APITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHH
Confidence            45677889999999999987764

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=88.24  E-value=0.11  Score=44.38  Aligned_cols=22  Identities=36%  Similarity=0.613  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCcchhhhhhccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl  229 (356)
                      .+||||-.-+|||||+++|++-
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHCC
Confidence            5899999999999999999964

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=88.23  E-value=0.1  Score=45.88  Aligned_cols=22  Identities=41%  Similarity=0.646  Sum_probs=19.2

Q ss_pred             CeeeeecCCCCchhhHHHHHhC
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g  271 (356)
                      .++++.|+-|+|||||+..+..
T Consensus        52 ~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          52 IRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEeeeCCCCCCHHHHHHHHHH
Confidence            4689999999999999988764

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=87.91  E-value=0.09  Score=45.55  Aligned_cols=24  Identities=29%  Similarity=0.563  Sum_probs=21.3

Q ss_pred             CeEEEEcCCCCCcchhhhhhcccc
Q psy2684         207 SRVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       207 e~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      =.+||||..-+|||||+++|++--
T Consensus        11 ~kiGivG~Pn~GKSTlfnalT~~~   34 (296)
T d1ni3a1          11 LKTGIVGMPNVGKSTFFRAITKSV   34 (296)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHST
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCC
Confidence            358999999999999999999764

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.89  E-value=0.09  Score=41.65  Aligned_cols=28  Identities=29%  Similarity=0.412  Sum_probs=21.4

Q ss_pred             eeeeecCCCCchhhHHHHHhCCCCCCcc
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGELTPNKG  278 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~~~~~g  278 (356)
                      ++.++|..|+|||||++.+.....|..|
T Consensus         4 KivllG~~~vGKTsl~~r~~~~~~~t~~   31 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKIIHEAGTG   31 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCcc
Confidence            5789999999999999887654444333

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=87.78  E-value=0.094  Score=44.95  Aligned_cols=23  Identities=26%  Similarity=0.206  Sum_probs=19.8

Q ss_pred             CCeEEEEcCCCCCcchhhhhhcc
Q psy2684         206 ESRVALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       206 ge~~~i~G~nGsGKSTll~~l~g  228 (356)
                      ..+++|.|..|.|||||.+.+..
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            34789999999999999988753

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=87.72  E-value=0.15  Score=42.90  Aligned_cols=23  Identities=43%  Similarity=0.767  Sum_probs=19.8

Q ss_pred             eeeeecCCCCchhhHHHHHhCCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      .+-+.||.|||||+++++++...
T Consensus        44 giLl~GppGtGKT~la~aia~~~   66 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGEA   66 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEecCCCCChhHHHHHHHHHc
Confidence            46677999999999999999754

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.72  E-value=0.11  Score=41.43  Aligned_cols=21  Identities=24%  Similarity=0.458  Sum_probs=18.0

Q ss_pred             eeeeecCCCCchhhHHHHHhC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g  271 (356)
                      ++.++|+.|+|||+|++.+..
T Consensus         5 KvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            588999999999999976654

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.63  E-value=0.25  Score=42.37  Aligned_cols=23  Identities=35%  Similarity=0.527  Sum_probs=21.3

Q ss_pred             eeeeecCCCCchhhHHHHHhCCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      +++++|.-++|||||+++|+|.-
T Consensus        28 ~ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             eEEEEcCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999965

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.54  E-value=0.13  Score=43.82  Aligned_cols=25  Identities=28%  Similarity=0.485  Sum_probs=20.7

Q ss_pred             CeeeeecCCCCchhhHHHHHhCCCC
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKGELT  274 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g~~~  274 (356)
                      ..+-+.||.|+|||++++++++.+.
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~~~~   66 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIANECQ   66 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCcchhHHHHHHHHhC
Confidence            4466779999999999999988653

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.50  E-value=0.16  Score=42.99  Aligned_cols=24  Identities=29%  Similarity=0.499  Sum_probs=20.2

Q ss_pred             CeeeeecCCCCchhhHHHHHhCCC
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      ..+-+.||.|+|||+++++++...
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~~   62 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANET   62 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceeEEecCCCCCchHHHHHHHHHh
Confidence            446677999999999999998853

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=87.40  E-value=0.13  Score=42.00  Aligned_cols=21  Identities=33%  Similarity=0.339  Sum_probs=17.4

Q ss_pred             eeeeecCCCCchhhHHHHHhC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g  271 (356)
                      .|-+.|.+||||||+.+.|..
T Consensus        26 vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          26 TIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            455679999999999988864

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=87.03  E-value=0.15  Score=40.95  Aligned_cols=22  Identities=32%  Similarity=0.519  Sum_probs=19.9

Q ss_pred             eeeeecCCCCchhhHHHHHhCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~  272 (356)
                      .||++|.-.+|||||++.|+|.
T Consensus         7 nIaiiGhvd~GKSTL~~~L~g~   28 (195)
T d1kk1a3           7 NIGMVGHVDHGKTTLTKALTGV   28 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEEeccCCcHHHHHHHHHhh
Confidence            4799999999999999999874

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=87.01  E-value=0.11  Score=45.73  Aligned_cols=37  Identities=16%  Similarity=0.145  Sum_probs=26.7

Q ss_pred             eEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF  244 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~  244 (356)
                      ++.+.||.|+|||.+.+.|++...-...-+.+++-++
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~  161 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEP  161 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCS
T ss_pred             eEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHh
Confidence            4566899999999999999997643223355665554

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.98  E-value=0.13  Score=42.10  Aligned_cols=21  Identities=33%  Similarity=0.588  Sum_probs=17.6

Q ss_pred             eeeecCCCCchhhHHHHHhCC
Q psy2684         252 VALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       252 ialvG~nG~GKsTll~~l~g~  272 (356)
                      +-+.||.|+||||++++++..
T Consensus        38 lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHH
Confidence            445699999999999999764

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=86.66  E-value=0.17  Score=39.47  Aligned_cols=27  Identities=26%  Similarity=0.222  Sum_probs=21.1

Q ss_pred             cCCeeeeecCCCCchhhHHHHHhCCCC
Q psy2684         248 MESRVALVGPNGIGKSTFLNLLKGELT  274 (356)
Q Consensus       248 ~~~~ialvG~nG~GKsTll~~l~g~~~  274 (356)
                      ++..+.+.|+=|+||||+.+.++..+.
T Consensus        32 ~g~ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          32 KAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCeEEEEecCCCccHHHHHHHHHhhcc
Confidence            344567779999999999998876553

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=86.57  E-value=0.19  Score=44.33  Aligned_cols=32  Identities=28%  Similarity=0.366  Sum_probs=25.2

Q ss_pred             eEEEEcCCCCCcchhhhhhccccccCCCceeE
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGELTPNKGKVLL  239 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~  239 (356)
                      +|.|=|+-|+||||+++.|...+....+.+++
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~   39 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYF   39 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEE
T ss_pred             EEEEECCccCCHHHHHHHHHHHhccCCCeEEE
Confidence            47788999999999999999987655443333

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=86.26  E-value=0.15  Score=43.72  Aligned_cols=36  Identities=14%  Similarity=0.221  Sum_probs=28.3

Q ss_pred             CccccccceeeecCCCeEEEEcCCCCCcchhhhhhcc
Q psy2684         192 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG  228 (356)
Q Consensus       192 ~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~g  228 (356)
                      +..+++-+ +.|-+|++++|+|++|+|||+|+..+.-
T Consensus        54 Gi~~ID~l-~pig~GQr~~Ifg~~g~GKt~l~~~~~~   89 (276)
T d1fx0a3          54 GLIAIDAM-IPVGRGQRELIIGDRQTGKTAVATDTIL   89 (276)
T ss_dssp             SCTTTTTT-SCCBTTCBCBEEESSSSSHHHHHHHHHH
T ss_pred             cceEEecc-ccccCCceEeeccCCCCChHHHHHHHHh
Confidence            33455544 6899999999999999999999875443

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=86.06  E-value=0.17  Score=42.06  Aligned_cols=23  Identities=35%  Similarity=0.439  Sum_probs=19.1

Q ss_pred             eeeeecCCCCchhhHHHHHhCCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      .+.+.||-|+||||+++.++..+
T Consensus        45 ~lll~GppGtGKT~l~~~l~~~l   67 (276)
T d1fnna2          45 RATLLGRPGTGKTVTLRKLWELY   67 (276)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHHH
Confidence            45566999999999999998654

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=86.05  E-value=0.16  Score=42.09  Aligned_cols=21  Identities=24%  Similarity=0.316  Sum_probs=18.6

Q ss_pred             eeeeecCCCCchhhHHHHHhC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g  271 (356)
                      .||+.|.-||||||..+.+..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            579999999999999998853

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=85.89  E-value=0.16  Score=44.70  Aligned_cols=32  Identities=31%  Similarity=0.461  Sum_probs=25.2

Q ss_pred             eEEEEcCCCCCcchhhhhhccccccCCCceeE
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGELTPNKGKVLL  239 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~  239 (356)
                      +|.|=|+=||||||+++.|.-.+......+.+
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~   38 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRILL   38 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTTTSGGGEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhhcCCceEE
Confidence            47889999999999999998877654444444

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=85.85  E-value=0.16  Score=44.15  Aligned_cols=22  Identities=32%  Similarity=0.510  Sum_probs=19.6

Q ss_pred             eeeeecCCCCchhhHHHHHhCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~  272 (356)
                      .||+||..-+|||||+++++|.
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~   23 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLV   23 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             cEeEECCCCCCHHHHHHHHHCC
Confidence            5899999899999999999885

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=85.74  E-value=0.15  Score=45.64  Aligned_cols=22  Identities=36%  Similarity=0.685  Sum_probs=19.2

Q ss_pred             eeeecCCCCchhhHHHHHhCCC
Q psy2684         252 VALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       252 ialvG~nG~GKsTll~~l~g~~  273 (356)
                      +-++||.|+|||-+.+.|+...
T Consensus        71 iLfiGPTGvGKTElAk~LA~~~   92 (364)
T d1um8a_          71 ILLIGPTGSGKTLMAQTLAKHL   92 (364)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             eeeeCCCCccHHHHHHHHHhhc
Confidence            5677999999999999998764

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.70  E-value=0.15  Score=42.05  Aligned_cols=25  Identities=36%  Similarity=0.612  Sum_probs=20.3

Q ss_pred             CeeeeecCCCCchhhHHHHHhCCCC
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKGELT  274 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g~~~  274 (356)
                      +.|++-|.-||||||+++.|...+.
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHh
Confidence            3567779999999999999986543

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.65  E-value=0.83  Score=37.75  Aligned_cols=57  Identities=16%  Similarity=-0.002  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH-----HHHHHHhcCcEEEEEecChhHH
Q psy2684          12 GWRIRVSLARALFLEPTLLLLDEPTNHLDLNAVIW-----LDNYLQTWKKTLLVVSHDQSFL   68 (356)
Q Consensus        12 Ge~~r~~la~~l~~~p~~llLDEPt~~LD~~~~~~-----l~~~l~~~~~tvi~vsHd~~~l   68 (356)
                      .|.+++.-.---+.+..++|+||+..+=++.....     +..+..+.+..+|++||..+..
T Consensus       106 ~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~  167 (234)
T d1wb9a2         106 VEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT  167 (234)
T ss_dssp             HHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred             HHHHHHHHHHHhcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHh
Confidence            45566555544577778999999999988754322     3333344445788888876544

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=85.56  E-value=0.2  Score=43.08  Aligned_cols=27  Identities=22%  Similarity=0.329  Sum_probs=23.2

Q ss_pred             ccCcCCeeeeecCCCCchhhHHHHHhC
Q psy2684         245 GLDMESRVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       245 ~~~~~~~ialvG~nG~GKsTll~~l~g  271 (356)
                      .+..|.|.+++|+.|+|||||+..++.
T Consensus        39 PigrGQr~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          39 PIGRGQRGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             CCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred             cccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence            356678999999999999999988875

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=85.47  E-value=0.17  Score=37.49  Aligned_cols=21  Identities=24%  Similarity=0.167  Sum_probs=17.9

Q ss_pred             ecCCCeEEEEcCCCCCcchhh
Q psy2684         203 LDMESRVALVGPNGIGKSTFL  223 (356)
Q Consensus       203 i~~ge~~~i~G~nGsGKSTll  223 (356)
                      +++|+.+.|..|.|||||..+
T Consensus         4 l~~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTH
T ss_pred             HHcCCcEEEEcCCCCChhHHH
Confidence            467899999999999999655

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=85.29  E-value=0.11  Score=42.06  Aligned_cols=21  Identities=24%  Similarity=0.303  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCcchhhhhhccc
Q psy2684         209 VALVGPNGIGKSTFLNLLKGE  229 (356)
Q Consensus       209 ~~i~G~nGsGKSTll~~l~gl  229 (356)
                      ++|+|.-++|||||++.|.+.
T Consensus         6 i~iiGHvd~GKSTL~~~l~~~   26 (196)
T d1d2ea3           6 VGTIGHVDHGKTTLTAAITKI   26 (196)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHH
Confidence            799999999999999988764

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=85.24  E-value=0.12  Score=46.86  Aligned_cols=33  Identities=27%  Similarity=0.412  Sum_probs=22.4

Q ss_pred             eEEEEcCCCCCcchhhhhh-ccccccCCCceeEe
Q psy2684         208 RVALVGPNGIGKSTFLNLL-KGELTPNKGKVLLE  240 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l-~gl~~p~~G~i~~~  240 (356)
                      .+.|+|++|||||++++.+ ...+.-..+-|.++
T Consensus        52 H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD   85 (433)
T d1e9ra_          52 HLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVD   85 (433)
T ss_dssp             CEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             eEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence            4799999999999998744 34444333444444

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.08  E-value=0.21  Score=39.74  Aligned_cols=25  Identities=20%  Similarity=0.220  Sum_probs=19.7

Q ss_pred             CcCCeeeeecCCCCchhhHHHHHhC
Q psy2684         247 DMESRVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       247 ~~~~~ialvG~nG~GKsTll~~l~g  271 (356)
                      ..++.+.+.|+.|+||||+.-.++.
T Consensus        21 ~~G~v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          21 ETGSITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEEeCCCCCHHHHHHHHHH
Confidence            4566777889999999999866654

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.96  E-value=0.19  Score=43.23  Aligned_cols=21  Identities=29%  Similarity=0.327  Sum_probs=17.5

Q ss_pred             eeeeecCCCCchhhHHHHHhC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g  271 (356)
                      .||+-|+.||||||+...|..
T Consensus        29 iIGi~G~qGSGKSTl~~~l~~   49 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIYN   49 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHH
Confidence            468889999999999877653

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=84.90  E-value=0.14  Score=45.71  Aligned_cols=22  Identities=36%  Similarity=0.685  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCcchhhhhhcccc
Q psy2684         209 VALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       209 ~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      +.++||+|+|||-|.+.|+.+.
T Consensus        71 iLfiGPTGvGKTElAk~LA~~~   92 (364)
T d1um8a_          71 ILLIGPTGSGKTLMAQTLAKHL   92 (364)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             eeeeCCCCccHHHHHHHHHhhc
Confidence            4688999999999999998764

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=84.82  E-value=0.13  Score=42.75  Aligned_cols=23  Identities=30%  Similarity=0.559  Sum_probs=19.6

Q ss_pred             EEEEcCCCCCcchhhhhhccccc
Q psy2684         209 VALVGPNGIGKSTFLNLLKGELT  231 (356)
Q Consensus       209 ~~i~G~nGsGKSTll~~l~gl~~  231 (356)
                      +.|.||+|+||||+.++++..+.
T Consensus        37 ~Ll~Gp~G~GKtt~a~~~~~~l~   59 (239)
T d1njfa_          37 YLFSGTRGVGKTSIARLLAKGLN   59 (239)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Confidence            67889999999999999876553

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=84.68  E-value=0.21  Score=42.67  Aligned_cols=23  Identities=35%  Similarity=0.546  Sum_probs=20.6

Q ss_pred             CeeeeecCCCCchhhHHHHHhCC
Q psy2684         250 SRVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~g~  272 (356)
                      -++|+||.--+|||||++++++.
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHCC
Confidence            47899999999999999999965

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=84.64  E-value=0.15  Score=41.49  Aligned_cols=22  Identities=18%  Similarity=0.351  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCcchhhhhhcccc
Q psy2684         209 VALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       209 ~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      +.+.||.|+||||+.+.++..+
T Consensus        27 lLl~Gp~G~GKtt~a~~~a~~l   48 (207)
T d1a5ta2          27 LLIQALPGMGDDALIYALSRYL   48 (207)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHhc
Confidence            7889999999999999888755

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=84.20  E-value=0.2  Score=42.68  Aligned_cols=21  Identities=48%  Similarity=0.618  Sum_probs=18.5

Q ss_pred             CeeeeecCCCCchhhHHHHHh
Q psy2684         250 SRVALVGPNGIGKSTFLNLLK  270 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~  270 (356)
                      +.++++|+-|+|||||...|+
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll   23 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALL   23 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEEcCCCCcHHHHHHHHH
Confidence            358999999999999999884

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=83.86  E-value=0.22  Score=42.90  Aligned_cols=25  Identities=28%  Similarity=0.499  Sum_probs=21.8

Q ss_pred             cCCeeeeecCCCCchhhHHHHHhCC
Q psy2684         248 MESRVALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       248 ~~~~ialvG~nG~GKsTll~~l~g~  272 (356)
                      ..-++|+||...+|||||++++++.
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCC
Confidence            3457999999999999999999975

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=83.59  E-value=0.27  Score=39.06  Aligned_cols=23  Identities=30%  Similarity=0.315  Sum_probs=18.1

Q ss_pred             CCeeeeecCCCCchhhHHHHHhC
Q psy2684         249 ESRVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       249 ~~~ialvG~nG~GKsTll~~l~g  271 (356)
                      +.-+.+.|++|+||||+.-.+..
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHH
Confidence            45678889999999998766543

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=83.58  E-value=0.18  Score=41.33  Aligned_cols=22  Identities=27%  Similarity=0.460  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCcchhhhhhcccc
Q psy2684         209 VALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       209 ~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      +-|.||+|+|||-|+++++.-.
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~   60 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEA   60 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            6799999999999999887654

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=83.50  E-value=0.2  Score=41.93  Aligned_cols=21  Identities=29%  Similarity=0.495  Sum_probs=17.3

Q ss_pred             eeecCCCCchhhHHHHHhCCC
Q psy2684         253 ALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       253 alvG~nG~GKsTll~~l~g~~  273 (356)
                      .+.||-|+||||+++.++..+
T Consensus        50 ~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          50 GSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             ECTTCCSSSHHHHHHHHHHHH
T ss_pred             EeECCCCCCHHHHHHHHHHHH
Confidence            345999999999999988643

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.33  E-value=0.18  Score=43.43  Aligned_cols=35  Identities=14%  Similarity=0.208  Sum_probs=27.4

Q ss_pred             CccccccceeeecCCCeEEEEcCCCCCcchhhhhhc
Q psy2684         192 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK  227 (356)
Q Consensus       192 ~~~~l~~~sl~i~~ge~~~i~G~nGsGKSTll~~l~  227 (356)
                      +..+++-+ +.+-+|++++|+|+.|+|||+++..+.
T Consensus        55 GIraID~l-~pig~GQr~~If~~~g~GKt~ll~~~~   89 (285)
T d2jdia3          55 GIKAVDSL-VPIGRGQRELIIGDRQTGKTSIAIDTI   89 (285)
T ss_dssp             SCHHHHHH-SCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred             CceEEecc-cCccCCCEEEeecCCCCChHHHHHHHH
Confidence            33344444 689999999999999999999976444

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=83.26  E-value=0.23  Score=42.51  Aligned_cols=21  Identities=14%  Similarity=0.196  Sum_probs=18.6

Q ss_pred             CeeeeecCCCCchhhHHHHHh
Q psy2684         250 SRVALVGPNGIGKSTFLNLLK  270 (356)
Q Consensus       250 ~~ialvG~nG~GKsTll~~l~  270 (356)
                      +.+|++|+-|+|||||...|+
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll   27 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERIL   27 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHH
Confidence            468999999999999998884

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.09  E-value=0.25  Score=38.97  Aligned_cols=21  Identities=33%  Similarity=0.605  Sum_probs=18.0

Q ss_pred             eeeeecCCCCchhhHHHHHhC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g  271 (356)
                      ++.++|..|+|||||++.+..
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~   24 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRI   24 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            578899999999999987744

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=82.94  E-value=0.2  Score=42.72  Aligned_cols=23  Identities=30%  Similarity=0.470  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCcchhhhhhcccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGEL  230 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~  230 (356)
                      -+.||||.|+|||+++.-++..+
T Consensus        41 n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          41 NPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEECCCCCcHHHHHHHHHHHH
Confidence            46899999999999999888643

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=82.73  E-value=0.16  Score=44.38  Aligned_cols=25  Identities=36%  Similarity=0.445  Sum_probs=20.2

Q ss_pred             eeeeecCCCCchhhHHHHHhCCCCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGELTP  275 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~~~  275 (356)
                      .+-++|+-|+||||+++.+++.+++
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~iLp~   54 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAALLPE   54 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred             eEEEECCCCccHHHHHHHHHHhCCC
Confidence            3556699999999999999876643

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=82.63  E-value=0.21  Score=43.95  Aligned_cols=24  Identities=42%  Similarity=0.589  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCcchhhhhhccccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGELT  231 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~~  231 (356)
                      +|+|=|+-||||||+++.|...+.
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC---
T ss_pred             EEEEECCcCCCHHHHHHHHHHHhC
Confidence            478899999999999999987654

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=82.33  E-value=0.21  Score=41.13  Aligned_cols=19  Identities=32%  Similarity=0.448  Sum_probs=17.2

Q ss_pred             EEEEcCCCCCcchhhhhhc
Q psy2684         209 VALVGPNGIGKSTFLNLLK  227 (356)
Q Consensus       209 ~~i~G~nGsGKSTll~~l~  227 (356)
                      ++|+|.-++|||||+..|.
T Consensus         6 i~viGHVd~GKTTL~~~Ll   24 (224)
T d1jnya3           6 LIVIGHVDHGKSTLVGRLL   24 (224)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEecCCCCHHHHHHHHH
Confidence            7999999999999998773

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=82.18  E-value=0.23  Score=40.21  Aligned_cols=24  Identities=25%  Similarity=0.515  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCcchhhhhhccccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGELT  231 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~~  231 (356)
                      -+.|+|+.|.|||+++.-++..+.
T Consensus        45 n~lLvG~pGVGKTalv~~LA~ri~   68 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHHHHH
Confidence            468999999999999998887553

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.14  E-value=0.28  Score=42.00  Aligned_cols=23  Identities=43%  Similarity=0.540  Sum_probs=20.5

Q ss_pred             eeeeecCCCCchhhHHHHHhCCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      .|+++|+-++|||||++.+.|..
T Consensus        34 vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          34 VVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            46889999999999999999854

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=82.03  E-value=0.21  Score=43.60  Aligned_cols=24  Identities=29%  Similarity=0.614  Sum_probs=21.2

Q ss_pred             eEEEEcCCCCCcchhhhhhccccc
Q psy2684         208 RVALVGPNGIGKSTFLNLLKGELT  231 (356)
Q Consensus       208 ~~~i~G~nGsGKSTll~~l~gl~~  231 (356)
                      .+.++||+|+|||.+.+.|+-.+.
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~l~   78 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAATLF   78 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHHHhc
Confidence            467899999999999999998764

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=82.01  E-value=0.39  Score=38.71  Aligned_cols=23  Identities=26%  Similarity=0.486  Sum_probs=20.6

Q ss_pred             eeeeecCCCCchhhHHHHHhCCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      .+|++|.=.+|||||++.|++..
T Consensus        10 ni~iiGhVd~GKSTL~~~L~~~~   32 (205)
T d2qn6a3          10 NIGVVGHVDHGKTTLVQAITGIW   32 (205)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSCC
T ss_pred             EEEEEEccCCcHHHHHHHHHhhh
Confidence            58999999999999999999854

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=81.97  E-value=0.24  Score=42.12  Aligned_cols=68  Identities=18%  Similarity=0.178  Sum_probs=42.3

Q ss_pred             ecCCCeEEEEcCCCCCcchhhhhhccccccCCCceeEeeecc--ccCcCCeeeeecC--CCCchhhHHHHHhC
Q psy2684         203 LDMESRVALVGPNGIGKSTFLNLLKGELTPNKGKVLLEKVNF--GLDMESRVALVGP--NGIGKSTFLNLLKG  271 (356)
Q Consensus       203 i~~ge~~~i~G~nGsGKSTll~~l~gl~~p~~G~i~~~g~~~--~~~~~~~ialvG~--nG~GKsTll~~l~g  271 (356)
                      ..+--.+.+.||.++|||||+.+|..++ +..|.+.-.+..+  ..-.+.++++.-+  .++.=...+|.++|
T Consensus       101 ~~k~n~~~l~G~~~tGKS~f~~~i~~~l-g~~~~~~~~~~~f~l~~l~~k~~~~~~e~~~~~~~~~~~K~l~g  172 (267)
T d1u0ja_         101 FGKRNTIWLFGPATTGKTNIAEAIAHTV-PFYGCVNWTNENFPFNDCVDKMVIWWEEGKMTAKVVESAKAILG  172 (267)
T ss_dssp             STTCCEEEEECSTTSSHHHHHHHHHHHS-SCEEECCTTCSSCTTGGGSSCSEEEECSCCEETTTHHHHHHHHT
T ss_pred             CCccEEEEEEcCCCCCHHHHHHHHHHHh-cchhhccccCCCccccccCCCEEEEEeCCCccccHHHHHHHhcC
Confidence            4566678999999999999999999987 5555443222233  2334566665532  12222234566666

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=81.64  E-value=0.32  Score=38.62  Aligned_cols=23  Identities=39%  Similarity=0.375  Sum_probs=18.2

Q ss_pred             CCeeeeecCCCCchhhHHHHHhC
Q psy2684         249 ESRVALVGPNGIGKSTFLNLLKG  271 (356)
Q Consensus       249 ~~~ialvG~nG~GKsTll~~l~g  271 (356)
                      +.-+.+.|++|+||||+.-.+..
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            45677889999999999866654

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=81.54  E-value=0.33  Score=39.33  Aligned_cols=20  Identities=30%  Similarity=0.406  Sum_probs=18.2

Q ss_pred             eeeeecCCCCchhhHHHHHh
Q psy2684         251 RVALVGPNGIGKSTFLNLLK  270 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~  270 (356)
                      .|+++|.-++|||||+..|+
T Consensus         5 ni~iiGhvd~GKSTL~~~Ll   24 (204)
T d2c78a3           5 NVGTIGHVDHGKTTLTAALT   24 (204)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHH
Confidence            47899999999999999985

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=81.46  E-value=0.32  Score=42.34  Aligned_cols=22  Identities=32%  Similarity=0.585  Sum_probs=18.9

Q ss_pred             eeeecCCCCchhhHHHHHhCCC
Q psy2684         252 VALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       252 ialvG~nG~GKsTll~~l~g~~  273 (356)
                      +.++||.|+|||.+++.|+..+
T Consensus        55 ~lf~Gp~GvGKT~lak~la~~l   76 (315)
T d1r6bx3          55 FLFAGPTGVGKTEVTVQLSKAL   76 (315)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCcchhHHHHHHHHhhc
Confidence            5678999999999999998654

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=81.37  E-value=0.33  Score=42.57  Aligned_cols=23  Identities=43%  Similarity=0.593  Sum_probs=18.3

Q ss_pred             eeeeecCCCCchhhHHHHHhCCC
Q psy2684         251 RVALVGPNGIGKSTFLNLLKGEL  273 (356)
Q Consensus       251 ~ialvG~nG~GKsTll~~l~g~~  273 (356)
                      +|++-|+-|+||||+++.+...+
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l   28 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALG   28 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC--
T ss_pred             EEEEECCcCCCHHHHHHHHHHHh
Confidence            46666999999999999998654

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=80.62  E-value=0.35  Score=35.95  Aligned_cols=19  Identities=37%  Similarity=0.419  Sum_probs=15.2

Q ss_pred             CeEEEEcCCCCCcchhhhh
Q psy2684         207 SRVALVGPNGIGKSTFLNL  225 (356)
Q Consensus       207 e~~~i~G~nGsGKSTll~~  225 (356)
                      ....|.+|.|||||+++-.
T Consensus         9 ~~~ll~apTGsGKT~~~~~   27 (136)
T d1a1va1           9 QVAHLHAPTGSGKSTKVPA   27 (136)
T ss_dssp             EEEEEECCTTSCTTTHHHH
T ss_pred             CEEEEEeCCCCCHHHHHHH
Confidence            4567799999999998743

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=80.48  E-value=0.31  Score=40.15  Aligned_cols=19  Identities=32%  Similarity=0.296  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCcchhhhhhc
Q psy2684         209 VALVGPNGIGKSTFLNLLK  227 (356)
Q Consensus       209 ~~i~G~nGsGKSTll~~l~  227 (356)
                      ++++|.-.+|||||+..|.
T Consensus        12 i~viGHVd~GKSTL~~~Ll   30 (222)
T d1zunb3          12 FLTCGNVDDGKSTLIGRLL   30 (222)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            6999999999999999884

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.40  E-value=0.32  Score=39.97  Aligned_cols=21  Identities=38%  Similarity=0.498  Sum_probs=17.0

Q ss_pred             eeeecCCCCchhhHHHHHhCC
Q psy2684         252 VALVGPNGIGKSTFLNLLKGE  272 (356)
Q Consensus       252 ialvG~nG~GKsTll~~l~g~  272 (356)
                      +.+.|.=|||||||++.++..
T Consensus         6 ~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           6 TLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEeeCCCCCHHHHHHHHHhc
Confidence            345688999999999988764