Diaphorina citri psyllid: psy2725


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140---
MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREPIKSDLFQNALDALVKESSISLKL
cEEEEEEEEccccccccHHHHccccccccccccccHHHHHHHHHHHHHHHHcccccccccEEEEECccEEEEEEEcccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccccc
MTVYNFYLFDSFGTLLYYAEWNRLKHS*******GKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREPIKSDLFQNALDALVKESSISLK*
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MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREPIKSDLFQNALDALVKESSISLKL

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Trafficking protein particle complex subunit 1 May play a role in vesicular transport from endoplasmic reticulum to Golgi.very confidentQ2KMM2
Trafficking protein particle complex subunit 1 May play a role in vesicular transport from endoplasmic reticulum to Golgi.very confidentQ9Y5R8
Trafficking protein particle complex subunit 1 May play a role in vesicular transport from endoplasmic reticulum to Golgi.very confidentQ17QI1

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0030008 [CC]TRAPP complexconfidentGO:0043234, GO:0032991, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0044424
GO:0005783 [CC]endoplasmic reticulumprobableGO:0005737, GO:0043231, GO:0044464, GO:0043229, GO:0005623, GO:0005622, GO:0005575, GO:0044444, GO:0044424, GO:0043227, GO:0043226
GO:0006888 [BP]ER to Golgi vesicle-mediated transportprobableGO:0051234, GO:0016192, GO:0046907, GO:0048193, GO:0006810, GO:0044765, GO:0008150, GO:0051649, GO:0044763, GO:0009987, GO:0051641, GO:0051179, GO:0044699, GO:0016482
GO:0005829 [CC]cytosolprobableGO:0005737, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0044444, GO:0044424
GO:0005515 [MF]protein bindingprobableGO:0003674, GO:0005488
GO:0005801 [CC]cis-Golgi networkprobableGO:0043231, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0043229, GO:0044424, GO:0043227, GO:0043226
GO:0005794 [CC]Golgi apparatusprobableGO:0005737, GO:0043231, GO:0044464, GO:0043229, GO:0005623, GO:0005622, GO:0005575, GO:0044444, GO:0044424, GO:0043227, GO:0043226
GO:0005634 [CC]nucleusprobableGO:0043231, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0043229, GO:0044424, GO:0043227, GO:0043226

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 2J3T, chain C
Confidence level:very confident
Coverage over the Query: 2-142
View the alignment between query and template
View the model in PyMOL