Psyllid ID: psy2725

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140---
Protein Sequence
MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREPIKSDLFQNALDALVKESSISLKL
Secondary Structure (PSIPRED)
cEEEEEEEEccccccccHHHHccccccccccccccHHHHHHHHHHHHHHHHHccccccccEEEEEEccEEEEEEEcccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEEccccEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEcccEEEEEEEcccccEEEEEEccccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccEEEcc
Coil and Loop (DISEMBL)
MTVYNFYLFDSFGTLLYYAEWNrlkhsgmpreeegkLMYGMLFSLKSFvskispldsktgflsyktTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVknplinprepiksdLFQNALDALVKESSISLKL
Flexible Loop (DISEMBL)
MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREPIKSDLFQNALDALvkessislkl
Low Complexity Region (SEG)
MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLAsvyskvyveyvvkNPLINPREPIKSDLFQNALDALVKESSISLKL
Disordered region (IsUnstruct)
**VYNFYLFDSFGTLLYYAEWNRLKHS*******GKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREPIKSDLFQNALD************
Disordered Region (DISOPRED)
MTVYNFYLFDSFGTLLYYAEW***************LMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREPIKSDLFQNALDALVKESSISLK*
Disordered Region (DISEMBL)
MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREPIKSDLFQNALDALVKESSISLKL
Disordered Region (DISPRO)
MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREPIKSDLFQNALDALVKESSISLKL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREPIKSDLFQNALDALVKESSISLKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	143	2.2.26 [Sep-21-2011]
Q2KMM2	145	Trafficking protein parti	yes	N/A	0.944	0.931	0.570	6e-42
Q5NCF2	145	Trafficking protein parti	yes	N/A	0.944	0.931	0.570	6e-42
Q9Y5R8	145	Trafficking protein parti	yes	N/A	0.944	0.931	0.562	3e-41
Q17QI1	145	Trafficking protein parti	yes	N/A	0.944	0.931	0.562	3e-41
Q557G3	142	Trafficking protein parti	yes	N/A	0.930	0.936	0.433	1e-28
Q03630	159	Trafficking protein parti	yes	N/A	0.811	0.729	0.373	3e-16
Q9UT70	155	Transport protein particl	yes	N/A	0.958	0.883	0.307	3e-16
Q54UU1	135	Trafficking protein parti	no	N/A	0.888	0.940	0.297	4e-10
Q5R9J9	219	Trafficking protein parti	no	N/A	0.713	0.465	0.314	1e-08
Q9Y296	219	Trafficking protein parti	no	N/A	0.713	0.465	0.314	1e-08

>sp|Q2KMM2|TPPC1_RAT Trafficking protein particle complex subunit 1 OS=Rattus norvegicus GN=Trappc1 PE=2 SV=1

 Score =  169 bits (427), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 77/135 (57%), Positives = 106/135 (78%)

Query: 1   MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTG 60
           MTV+N YLFD  G  L+Y+EW+R K +G+P+EEE KLMYGMLFS++SFVSK+SPLD K G
Sbjct: 1   MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG 60

Query: 61  FLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREP 120
           FLS++T++Y LH YETPTG+K V+NTD+    +R  L  +YS +YVE+VVKNPL    + 
Sbjct: 61  FLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFVVKNPLCPLGQT 120

Query: 121 IKSDLFQNALDALVK 135
           ++S+LF++ LD+ V+
Sbjct: 121 VQSELFRSRLDSYVR 135

May play a role in vesicular transport from endoplasmic reticulum to Golgi.
Rattus norvegicus (taxid: 10116)

>sp|Q5NCF2|TPPC1_MOUSE Trafficking protein particle complex subunit 1 OS=Mus musculus GN=Trappc1 PE=1 SV=1

 Score =  169 bits (427), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 77/135 (57%), Positives = 106/135 (78%)

Query: 1   MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTG 60
           MTV+N YLFD  G  L+Y+EW+R K +G+P+EEE KLMYGMLFS++SFVSK+SPLD K G
Sbjct: 1   MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG 60

Query: 61  FLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREP 120
           FLS++T++Y LH YETPTG+K V+NTD+    +R  L  +YS +YVE+VVKNPL    + 
Sbjct: 61  FLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFVVKNPLCPLGQT 120

Query: 121 IKSDLFQNALDALVK 135
           ++S+LF++ LD+ V+
Sbjct: 121 VQSELFRSRLDSYVR 135

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Mus musculus (taxid: 10090)

>sp|Q9Y5R8|TPPC1_HUMAN Trafficking protein particle complex subunit 1 OS=Homo sapiens GN=TRAPPC1 PE=1 SV=1

 Score =  167 bits (422), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 76/135 (56%), Positives = 105/135 (77%)

Query: 1   MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTG 60
           MTV+N YLFD  G  L+Y+EW+R K +G+P+EEE KLMYGMLFS++SFVSK+SPLD K G
Sbjct: 1   MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG 60

Query: 61  FLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREP 120
           FL+++T++Y LH YETPTG+K V+NTD+    +R  L  +YS +YVE VVKNPL    + 
Sbjct: 61  FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELVVKNPLCPLGQT 120

Query: 121 IKSDLFQNALDALVK 135
           ++S+LF++ LD+ V+
Sbjct: 121 VQSELFRSRLDSYVR 135

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Homo sapiens (taxid: 9606)

>sp|Q17QI1|TPPC1_BOVIN Trafficking protein particle complex subunit 1 OS=Bos taurus GN=TRAPPC1 PE=2 SV=1

 Score =  167 bits (422), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 76/135 (56%), Positives = 105/135 (77%)

Query: 1   MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTG 60
           MTV+N YLFD  G  L+Y+EW+R K +G+P+EEE KLMYGMLFS++SFVSK+SPLD K G
Sbjct: 1   MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG 60

Query: 61  FLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREP 120
           FL+++T++Y LH YETPTG+K V+NTD+    +R  L  +YS +YVE VVKNPL    + 
Sbjct: 61  FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELVVKNPLCPLGQT 120

Query: 121 IKSDLFQNALDALVK 135
           ++S+LF++ LD+ V+
Sbjct: 121 VQSELFRSRLDSYVR 135

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Bos taurus (taxid: 9913)

>sp|Q557G3|TPPC1_DICDI Trafficking protein particle complex subunit 1 OS=Dictyostelium discoideum GN=trappc1-1 PE=3 SV=1

 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 59/136 (43%), Positives = 91/136 (66%), Gaps = 3/136 (2%)

Query: 3   VYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISP--LDSKTG 60
           +YN Y+F+  GT +YY +WN+ K S   + E+ KL++GML+SLK+F++  SP  +D KTG
Sbjct: 2   IYNIYIFNKDGTCIYYEDWNKKKQS-QNQSEDQKLLFGMLYSLKAFITSSSPKKIDDKTG 60

Query: 61  FLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREP 120
           F  YKT+ Y LH YET + +KF++ +D    D+R  L  +YS+++VEYV+KNP+      
Sbjct: 61  FHCYKTSTYKLHYYETLSCIKFIIMSDPNVPDLRDDLKKIYSQIFVEYVIKNPIYKHGTT 120

Query: 121 IKSDLFQNALDALVKE 136
           +K D F N L+  +K+
Sbjct: 121 VKCDTFINQLNLYLKQ 136

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Dictyostelium discoideum (taxid: 44689)

>sp|Q03630|BET5_YEAST Trafficking protein particle complex subunit BET5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BET5 PE=1 SV=1

 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 68/123 (55%), Gaps = 7/123 (5%)

Query: 1   MTVYNFYLFDSFGTLLYYAEWNRLKHSGM------PREEEGKLMYGMLFSLKSFVSKISP 54
           M +Y+F++FD     ++  EW    +S          EE+ KL+YGM+FSL+S   K+S 
Sbjct: 1   MGIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSK 60

Query: 55  LDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPL 114
              K    S  T KY +H Y T +GL FVL +D + Q   + L  +YS +YV+Y V N L
Sbjct: 61  GSVKNDIRSISTGKYRVHTYCTASGLWFVLLSDFKQQSYTQVLQYIYSHIYVKY-VSNNL 119

Query: 115 INP 117
           ++P
Sbjct: 120 LSP 122

Component of the TRAPP I, TRAPP II and TRAPP III complexes which act as guanine nucleotide exchange factors (GEF) for YPT1. TRAPP I plays a key role in the late stages of endoplasmic reticulum to Golgi traffic. TRAPP II plays a role in intra-Golgi transport. TRAPP III plays a role in autophagosome formation. Required for sporulation. Has a role late in meiosis following DNA replication.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9UT70|BET5_SCHPO Transport protein particle subunit bet5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bet5 PE=3 SV=2

 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 80/156 (51%), Gaps = 19/156 (12%)

Query: 1   MTVYNFYLFDSFGTLLYYAEWNRLKHSGMP-----------REEEGKLMYGMLFSLKSFV 49
           MT+Y FY++      ++   W     + M             ++  KL++G++FSL++ V
Sbjct: 1   MTIYAFYIYSRKCECVFAHRWKPSDRNSMETLVSQLEQNSIEDDMEKLIFGVVFSLRNMV 60

Query: 50  SKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYV 109
            KI+    +  F+SY T+KY LH YETPT L+ +  T+ +   +   L  +Y+ +YVE+V
Sbjct: 61  KKITA--DQDQFMSYTTSKYKLHFYETPTNLRLIFITNPKIDSLTHVLQQIYTTLYVEFV 118

Query: 110 VKNPLINPREP------IKSDLFQNALDALVKESSI 139
           VK+PL     P      I  ++F+  LD  V+  S 
Sbjct: 119 VKHPLYTHVPPSAEEGGINCEIFRITLDRFVRTLSC 154

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q54UU1|TPPC4_DICDI Trafficking protein particle complex subunit 4 OS=Dictyostelium discoideum GN=trappc4 PE=3 SV=1

 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 11/138 (7%)

Query: 1   MTVYNFYLFDSFGTLLY---YAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLD- 56
           MT+ + Y+ +  GTL+Y   +    +L H+   R      +     SL +  S +SP+  
Sbjct: 1   MTINSIYILNKAGTLIYQNDFGNTEKLSHNSYIR------LGSTFHSLHAIASNLSPVSG 54

Query: 57  SKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLIN 116
           S +G    +T  + L  ++T TG+KF +  D   Q + + L  VY ++Y +YV+KNP   
Sbjct: 55  SSSGIEVIETEAFKLQCFQTHTGIKFYVIADPNHQQLEELLHGVY-ELYTDYVLKNPFYE 113

Query: 117 PREPIKSDLFQNALDALV 134
               I+ DLF   L+ L+
Sbjct: 114 IEMQIRCDLFDYKLNRLL 131

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Dictyostelium discoideum (taxid: 44689)

>sp|Q5R9J9|TPPC4_PONAB Trafficking protein particle complex subunit 4 OS=Pongo abelii GN=TRAPPC4 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 3/105 (2%)

Query: 28  GMPR--EEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLN 85
           G PR    E  ++  M  SL +  S++SP    +G    +T  + LH Y+T TG+KFV+ 
Sbjct: 99  GRPRLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVL 158

Query: 86  TDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREPIKSDLFQNAL 130
            D +   +   L  +Y ++Y ++ +KNP  +   PI+ +LF   L
Sbjct: 159 ADPRQAGIDSLLRKIY-EIYSDFALKNPFYSLEMPIRCELFDQNL 202

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Pongo abelii (taxid: 9601)

>sp|Q9Y296|TPPC4_HUMAN Trafficking protein particle complex subunit 4 OS=Homo sapiens GN=TRAPPC4 PE=1 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 3/105 (2%)

Query: 28  GMPR--EEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLN 85
           G PR    E  ++  M  SL +  S++SP    +G    +T  + LH Y+T TG+KFV+ 
Sbjct: 99  GRPRLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVL 158

Query: 86  TDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREPIKSDLFQNAL 130
            D +   +   L  +Y ++Y ++ +KNP  +   PI+ +LF   L
Sbjct: 159 ADPRQAGIDSLLRKIY-EIYSDFALKNPFYSLEMPIRCELFDQNL 202

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
91094761	145	PREDICTED: similar to trafficking protei	0.986	0.972	0.695	7e-52
332376354	145	unknown [Dendroctonus ponderosae]	0.986	0.972	0.680	3e-50
389609801	145	conserved hypothetical protein [Papilio	0.972	0.958	0.654	1e-49
156537027	145	PREDICTED: trafficking protein particle	0.986	0.972	0.659	1e-49
357603310	145	trafficking protein particle complex 1 [	0.979	0.965	0.628	5e-49
114052112	146	trafficking protein particle complex 1 [	0.972	0.952	0.640	9e-48
242011886	145	trafficking protein particle complex sub	0.972	0.958	0.654	1e-47
156370309	141	predicted protein [Nematostella vectensi	0.944	0.957	0.629	7e-47
195452642	145	GK14119 [Drosophila willistoni] gi|19416	0.972	0.958	0.633	1e-46
332017490	145	Trafficking protein particle complex sub	0.986	0.972	0.638	4e-46

>gi|91094761|ref|XP_966940.1| PREDICTED: similar to trafficking protein particle complex 1 [Tribolium castaneum] gi|270016552|gb|EFA12998.1| hypothetical protein TcasGA2_TC001478 [Tribolium castaneum]

 Score =  208 bits (529), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 98/141 (69%), Positives = 114/141 (80%)

Query: 1   MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTG 60
           MTVYN Y+FD  GTLLYY EW+RLK SGM REEEGKLMYGMLFS+KSFV KISP D+K G
Sbjct: 1   MTVYNIYIFDKNGTLLYYNEWSRLKQSGMTREEEGKLMYGMLFSIKSFVGKISPTDTKEG 60

Query: 61  FLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREP 120
           FL YKT+KY LH  ETP+GLKFVLNTD  AQ VR+ L  +YS+VYVEYVVKNPL+N  EP
Sbjct: 61  FLYYKTSKYTLHFLETPSGLKFVLNTDTNAQGVRELLQQIYSQVYVEYVVKNPLVNLSEP 120

Query: 121 IKSDLFQNALDALVKESSISL 141
           I+S+LF+  LD  +K+S + L
Sbjct: 121 IQSELFKTKLDTFIKQSPVYL 141

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332376354|gb|AEE63317.1| unknown [Dendroctonus ponderosae]

 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 96/141 (68%), Positives = 114/141 (80%)

Query: 1   MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTG 60
           MTV+N Y+FD  GTLLYY +WNRLK+SGM +EEE KLMYGMLFSLKSFV+KISP D K G
Sbjct: 1   MTVHNIYIFDRMGTLLYYQDWNRLKNSGMTKEEEAKLMYGMLFSLKSFVNKISPTDPKEG 60

Query: 61  FLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREP 120
           FL YKT+KY LH  ETP+GLKFVLNTD  +Q VR FL  +Y +++VEYVVKNPL N  EP
Sbjct: 61  FLYYKTSKYTLHFLETPSGLKFVLNTDNHSQGVRDFLQQIYKEIFVEYVVKNPLCNLNEP 120

Query: 121 IKSDLFQNALDALVKESSISL 141
           I+S+LF+  LDA VK+SS+ L
Sbjct: 121 IQSELFKTKLDAYVKQSSVFL 141

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389609801|dbj|BAM18512.1| conserved hypothetical protein [Papilio xuthus]

 Score =  201 bits (510), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 91/139 (65%), Positives = 112/139 (80%)

Query: 1   MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTG 60
           MT++N Y+FD +GTLLYY EWNR K SGM REEEGKLMYGMLFS+KSFVSKISPLD K G
Sbjct: 1   MTIHNLYIFDRYGTLLYYGEWNRSKQSGMSREEEGKLMYGMLFSIKSFVSKISPLDPKDG 60

Query: 61  FLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREP 120
           FL+YKT+KY LH  ETP+GLKFV+NTD QAQ VR  L  +Y ++YV+Y V+NPL    EP
Sbjct: 61  FLNYKTSKYTLHCLETPSGLKFVMNTDNQAQGVRDLLKKIYGEIYVKYAVRNPLCGIGEP 120

Query: 121 IKSDLFQNALDALVKESSI 139
           I S+LF++ LD+ +K++ I
Sbjct: 121 ITSELFKSKLDSFIKQTPI 139

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156537027|ref|XP_001608308.1| PREDICTED: trafficking protein particle complex subunit 1-like [Nasonia vitripennis]

 Score =  201 bits (510), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 93/141 (65%), Positives = 115/141 (81%)

Query: 1   MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTG 60
           MT++N Y+F   GTLLYY EWNRL  SGM +EEE KLMYGMLFS+KSFV+KISPLDSK G
Sbjct: 1   MTIHNLYIFSKNGTLLYYTEWNRLNKSGMTKEEEAKLMYGMLFSIKSFVNKISPLDSKEG 60

Query: 61  FLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREP 120
           FL YKT+KY LH +ETP+GLKF+LNTD  AQ+VR+ L  +YS+VY+EYVVKNPL  P EP
Sbjct: 61  FLYYKTSKYTLHYFETPSGLKFILNTDNLAQNVRELLQRLYSQVYIEYVVKNPLCQPNEP 120

Query: 121 IKSDLFQNALDALVKESSISL 141
           I+S+LF+  +D L+++S I L
Sbjct: 121 IQSELFKAKIDELIRKSPIFL 141

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357603310|gb|EHJ63709.1| trafficking protein particle complex 1 [Danaus plexippus]

 Score =  198 bits (504), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 88/140 (62%), Positives = 112/140 (80%)

Query: 1   MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTG 60
           MT+YN Y+FD +GTLLYY EWNR K +GM REEEGKLMYGMLFS+KSFV+KISPLD K G
Sbjct: 1   MTIYNLYIFDRYGTLLYYGEWNRTKQAGMSREEEGKLMYGMLFSIKSFVAKISPLDPKDG 60

Query: 61  FLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREP 120
           FL+YKT+KY LH  ETP+GLKFV+NTD Q Q VR+ L  +Y+++YV+Y+ +NPL    EP
Sbjct: 61  FLNYKTSKYTLHYLETPSGLKFVMNTDNQVQGVRELLKKIYAEIYVKYITRNPLCGIGEP 120

Query: 121 IKSDLFQNALDALVKESSIS 140
           I S+LF+  LDA +K++  +
Sbjct: 121 ITSELFKTKLDAFIKQAPFA 140

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|114052112|ref|NP_001040218.1| trafficking protein particle complex 1 [Bombyx mori] gi|87248423|gb|ABD36264.1| trafficking protein particle complex 1 [Bombyx mori]

 Score =  194 bits (493), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 89/139 (64%), Positives = 110/139 (79%)

Query: 1   MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTG 60
           MT+YN Y+FD +GTLLYY EWNR K SGM  EEEGKLMYGMLFS+KSFVSKISPLD K G
Sbjct: 1   MTIYNLYIFDRYGTLLYYGEWNRSKQSGMSIEEEGKLMYGMLFSIKSFVSKISPLDPKDG 60

Query: 61  FLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREP 120
           F  YKT+KY LH  ETP+GLKFV+NTD QAQ VR  L  +Y+++YV+Y+++NPL    EP
Sbjct: 61  FSHYKTSKYTLHCLETPSGLKFVMNTDNQAQGVRDLLKKIYAEIYVKYMIRNPLCEMGEP 120

Query: 121 IKSDLFQNALDALVKESSI 139
           + SDLF++ LD  +K++ I
Sbjct: 121 MVSDLFKSKLDLFIKQTPI 139

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242011886|ref|XP_002426674.1| trafficking protein particle complex subunit, putative [Pediculus humanus corporis] gi|212510845|gb|EEB13936.1| trafficking protein particle complex subunit, putative [Pediculus humanus corporis]

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 91/139 (65%), Positives = 112/139 (80%)

Query: 1   MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTG 60
           MT+YNFYLFD  GTLLYYAEW R+K SGM REEEGKLMYGMLFSLK+FV++ISP+D K G
Sbjct: 1   MTIYNFYLFDKNGTLLYYAEWFRVKQSGMTREEEGKLMYGMLFSLKTFVTRISPMDVKEG 60

Query: 61  FLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREP 120
           FL YKT+KY L+ +ETPTGLKFVLNTD+ + + R  L  +YS++YVEYVVKNPL +  E 
Sbjct: 61  FLYYKTSKYVLNYFETPTGLKFVLNTDIVSPNNRDILQQIYSQIYVEYVVKNPLCSMNEA 120

Query: 121 IKSDLFQNALDALVKESSI 139
           I+S+LF+  LD  +K + I
Sbjct: 121 IESELFKTKLDEFIKRTPI 139

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156370309|ref|XP_001628413.1| predicted protein [Nematostella vectensis] gi|156215389|gb|EDO36350.1| predicted protein [Nematostella vectensis]

 Score =  191 bits (486), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 85/135 (62%), Positives = 111/135 (82%)

Query: 1   MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTG 60
           MT+YN Y+FD  GT L+Y EWNR+K+S M R+EE KLMYGML+S+KSFVS+ISP +SK G
Sbjct: 1   MTIYNLYIFDRNGTCLFYDEWNRVKNSDMSRDEEFKLMYGMLYSIKSFVSRISPSESKQG 60

Query: 61  FLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREP 120
           FLSYKT+KY LH YETPTGLK ++NTD+ A ++R+ L  +YSK+YVEYVVKNP+    EP
Sbjct: 61  FLSYKTSKYKLHFYETPTGLKLIMNTDIHANNIRETLNDIYSKIYVEYVVKNPMCKLDEP 120

Query: 121 IKSDLFQNALDALVK 135
           I+S+LF++ LDA ++
Sbjct: 121 IQSELFRSKLDAFIR 135

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|195452642|ref|XP_002073442.1| GK14119 [Drosophila willistoni] gi|194169527|gb|EDW84428.1| GK14119 [Drosophila willistoni]

 Score =  191 bits (484), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 88/139 (63%), Positives = 109/139 (78%)

Query: 1   MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTG 60
           MT++N Y+FD FGTL+YY EWNR K SG+ REEE KL YGMLFS+KSFVSKISP D + G
Sbjct: 1   MTIFNMYIFDKFGTLMYYVEWNRTKKSGITREEEAKLTYGMLFSIKSFVSKISPHDPREG 60

Query: 61  FLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREP 120
           FL YKT +YALH  ETP+GLKFVLNTD  A +V++ L  +Y+K++VEYVV++PL  P  P
Sbjct: 61  FLYYKTNRYALHYLETPSGLKFVLNTDTAAINVKELLQQLYAKIWVEYVVRDPLWTPGTP 120

Query: 121 IKSDLFQNALDALVKESSI 139
           + S+LFQN LD  VK+S I
Sbjct: 121 VTSELFQNKLDEFVKQSPI 139

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017490|gb|EGI58211.1| Trafficking protein particle complex subunit 1 [Acromyrmex echinatior]

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 90/141 (63%), Positives = 111/141 (78%)

Query: 1   MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTG 60
           MT++N Y+F   GTLLYYAEWNRL  SG+ +EEE KLMYGMLFS+KSFVSKISPLD K G
Sbjct: 1   MTIHNLYIFSKTGTLLYYAEWNRLNKSGITKEEEAKLMYGMLFSIKSFVSKISPLDPKEG 60

Query: 61  FLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREP 120
           FL YKT+KY LH +ETP+GLKFVLNTD  +Q+ R+ L  +Y +VY+EYVVKNPL    EP
Sbjct: 61  FLYYKTSKYTLHYFETPSGLKFVLNTDNASQNARELLQQLYREVYLEYVVKNPLCQLNEP 120

Query: 121 IKSDLFQNALDALVKESSISL 141
           I+S+LF+  +D L K+S + L
Sbjct: 121 IQSELFKMKVDELFKKSPLFL 141

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
FB|FBgn0260860	145	Bet5 [Drosophila melanogaster	0.972	0.958	0.575	7e-38
ZFIN|ZDB-GENE-040718-242	145	trappc1 "trafficking protein p	0.944	0.931	0.511	5.8e-34
MGI|MGI:1098727	145	Trappc1 "trafficking protein p	0.944	0.931	0.511	1.5e-33
RGD|1311365	145	Trappc1 "trafficking protein p	0.944	0.931	0.511	1.5e-33
UNIPROTKB|Q2KMM2	145	Trappc1 "Trafficking protein p	0.944	0.931	0.511	1.5e-33
UNIPROTKB|Q17QI1	145	TRAPPC1 "Trafficking protein p	0.944	0.931	0.503	3.2e-33
UNIPROTKB|E2RTE6	145	TRAPPC1 "Uncharacterized prote	0.944	0.931	0.503	3.2e-33
UNIPROTKB|Q9Y5R8	145	TRAPPC1 "Trafficking protein p	0.944	0.931	0.503	3.2e-33
UNIPROTKB|F2Z5M0	145	TRAPPC1 "Uncharacterized prote	0.944	0.931	0.503	3.2e-33
UNIPROTKB|I3L3S0	95	TRAPPC1 "Trafficking protein p	0.657	0.989	0.617	2.1e-29

FB|FBgn0260860 Bet5 [Drosophila melanogaster (taxid:7227)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 80/139 (57%), Positives = 97/139 (69%)

Query:     1 MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTG 60
             MT++N Y+FD FGTLL+YAEWNR K SG+ REEE KL YGMLFS+KSFVSKISP D K G
Sbjct:     1 MTIFNLYIFDKFGTLLHYAEWNRTKKSGITREEEAKLTYGMLFSIKSFVSKISPHDPKEG 60

Query:    61 FLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLAXXXXXXXXXXXXXNPLINPREP 120
             FL YKT +YALH  ETP+GLKFVLNTD  A +V++ L              +PL  P   
Sbjct:    61 FLYYKTNRYALHYLETPSGLKFVLNTDTTAINVKELLQQLYAKVWVEFVVRDPLWTPGTV 120

Query:   121 IKSDLFQNALDALVKESSI 139
             + S+LFQ+ LD  V++S I
Sbjct:   121 VTSELFQSKLDEFVRQSPI 139

GO:0030008 "TRAPP complex" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

ZFIN|ZDB-GENE-040718-242 trappc1 "trafficking protein particle complex 1" [Danio rerio (taxid:7955)]

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 69/135 (51%), Positives = 95/135 (70%)

Query:     1 MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTG 60
             MTV+N Y+FD  GT L+Y+EWNR K +G+ +EEE KLMYGMLFS++SFVSK+SPLD K G
Sbjct:     1 MTVHNLYIFDRNGTCLHYSEWNRKKQAGISKEEEFKLMYGMLFSIRSFVSKMSPLDMKDG 60

Query:    61 FLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLAXXXXXXXXXXXXXNPLINPREP 120
             FLS++T +Y LH YETPTG++ V+NTD+ A + R+ L              NPL    E 
Sbjct:    61 FLSFQTNRYKLHYYETPTGIRLVMNTDLSAPNCRETLQQIYSTLYVDLIVKNPLCVLGES 120

Query:   121 IKSDLFQNALDALVK 135
             ++S+LF + LD+ ++
Sbjct:   121 LQSELFNSKLDSFIR 135

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:1098727 Trappc1 "trafficking protein particle complex 1" [Mus musculus (taxid:10090)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 69/135 (51%), Positives = 95/135 (70%)

Query:     1 MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTG 60
             MTV+N YLFD  G  L+Y+EW+R K +G+P+EEE KLMYGMLFS++SFVSK+SPLD K G
Sbjct:     1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG 60

Query:    61 FLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLAXXXXXXXXXXXXXNPLINPREP 120
             FLS++T++Y LH YETPTG+K V+NTD+    +R  L              NPL    + 
Sbjct:    61 FLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFVVKNPLCPLGQT 120

Query:   121 IKSDLFQNALDALVK 135
             ++S+LF++ LD+ V+
Sbjct:   121 VQSELFRSRLDSYVR 135

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030008 "TRAPP complex" evidence=IDA

RGD|1311365 Trappc1 "trafficking protein particle complex 1" [Rattus norvegicus (taxid:10116)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 69/135 (51%), Positives = 95/135 (70%)

Query:     1 MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTG 60
             MTV+N YLFD  G  L+Y+EW+R K +G+P+EEE KLMYGMLFS++SFVSK+SPLD K G
Sbjct:     1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG 60

Query:    61 FLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLAXXXXXXXXXXXXXNPLINPREP 120
             FLS++T++Y LH YETPTG+K V+NTD+    +R  L              NPL    + 
Sbjct:    61 FLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFVVKNPLCPLGQT 120

Query:   121 IKSDLFQNALDALVK 135
             ++S+LF++ LD+ V+
Sbjct:   121 VQSELFRSRLDSYVR 135

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0030008 "TRAPP complex" evidence=IEA;ISO

UNIPROTKB|Q2KMM2 Trappc1 "Trafficking protein particle complex subunit 1" [Rattus norvegicus (taxid:10116)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 69/135 (51%), Positives = 95/135 (70%)

Query:     1 MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTG 60
             MTV+N YLFD  G  L+Y+EW+R K +G+P+EEE KLMYGMLFS++SFVSK+SPLD K G
Sbjct:     1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG 60

Query:    61 FLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLAXXXXXXXXXXXXXNPLINPREP 120
             FLS++T++Y LH YETPTG+K V+NTD+    +R  L              NPL    + 
Sbjct:    61 FLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFVVKNPLCPLGQT 120

Query:   121 IKSDLFQNALDALVK 135
             ++S+LF++ LD+ V+
Sbjct:   121 VQSELFRSRLDSYVR 135

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|Q17QI1 TRAPPC1 "Trafficking protein particle complex subunit 1" [Bos taurus (taxid:9913)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 68/135 (50%), Positives = 95/135 (70%)

Query:     1 MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTG 60
             MTV+N YLFD  G  L+Y+EW+R K +G+P+EEE KLMYGMLFS++SFVSK+SPLD K G
Sbjct:     1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG 60

Query:    61 FLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLAXXXXXXXXXXXXXNPLINPREP 120
             FL+++T++Y LH YETPTG+K V+NTD+    +R  L              NPL    + 
Sbjct:    61 FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELVVKNPLCPLGQT 120

Query:   121 IKSDLFQNALDALVK 135
             ++S+LF++ LD+ V+
Sbjct:   121 VQSELFRSRLDSYVR 135

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0030008 "TRAPP complex" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|E2RTE6 TRAPPC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 68/135 (50%), Positives = 95/135 (70%)

Query:     1 MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTG 60
             MTV+N YLFD  G  L+Y+EW+R K +G+P+EEE KLMYGMLFS++SFVSK+SPLD K G
Sbjct:     1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG 60

Query:    61 FLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLAXXXXXXXXXXXXXNPLINPREP 120
             FL+++T++Y LH YETPTG+K V+NTD+    +R  L              NPL    + 
Sbjct:    61 FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELVVKNPLCPLGQT 120

Query:   121 IKSDLFQNALDALVK 135
             ++S+LF++ LD+ V+
Sbjct:   121 VQSELFRSRLDSYVR 135

GO:0030008 "TRAPP complex" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|Q9Y5R8 TRAPPC1 "Trafficking protein particle complex subunit 1" [Homo sapiens (taxid:9606)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 68/135 (50%), Positives = 95/135 (70%)

Query:     1 MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTG 60
             MTV+N YLFD  G  L+Y+EW+R K +G+P+EEE KLMYGMLFS++SFVSK+SPLD K G
Sbjct:     1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG 60

Query:    61 FLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLAXXXXXXXXXXXXXNPLINPREP 120
             FL+++T++Y LH YETPTG+K V+NTD+    +R  L              NPL    + 
Sbjct:    61 FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELVVKNPLCPLGQT 120

Query:   121 IKSDLFQNALDALVK 135
             ++S+LF++ LD+ V+
Sbjct:   121 VQSELFRSRLDSYVR 135

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0030008 "TRAPP complex" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

UNIPROTKB|F2Z5M0 TRAPPC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 68/135 (50%), Positives = 95/135 (70%)

Query:     1 MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTG 60
             MTV+N YLFD  G  L+Y+EW+R K +G+P+EEE KLMYGMLFS++SFVSK+SPLD K G
Sbjct:     1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG 60

Query:    61 FLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLAXXXXXXXXXXXXXNPLINPREP 120
             FL+++T++Y LH YETPTG+K V+NTD+    +R  L              NPL    + 
Sbjct:    61 FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELVVKNPLCPLGQT 120

Query:   121 IKSDLFQNALDALVK 135
             ++S+LF++ LD+ V+
Sbjct:   121 VQSELFRSRLDSYVR 135

GO:0030008 "TRAPP complex" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|I3L3S0 TRAPPC1 "Trafficking protein particle complex subunit 1" [Homo sapiens (taxid:9606)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 58/94 (61%), Positives = 77/94 (81%)

Query:     1 MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTG 60
             MTV+N YLFD  G  L+Y+EW+R K +G+P+EEE KLMYGMLFS++SFVSK+SPLD K G
Sbjct:     1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG 60

Query:    61 FLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVR 94
             FL+++T++Y LH YETPTG+K V+NTD+    +R
Sbjct:    61 FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIR 94

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0030008 "TRAPP complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2KMM2	TPPC1_RAT	No assigned EC number	0.5703	0.9440	0.9310	yes	N/A
Q03630	BET5_YEAST	No assigned EC number	0.3739	0.8111	0.7295	yes	N/A
Q9Y5R8	TPPC1_HUMAN	No assigned EC number	0.5629	0.9440	0.9310	yes	N/A
Q9UT70	BET5_SCHPO	No assigned EC number	0.3076	0.9580	0.8838	yes	N/A
Q557G3	TPPC1_DICDI	No assigned EC number	0.4338	0.9300	0.9366	yes	N/A
Q17QI1	TPPC1_BOVIN	No assigned EC number	0.5629	0.9440	0.9310	yes	N/A
Q5NCF2	TPPC1_MOUSE	No assigned EC number	0.5703	0.9440	0.9310	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	143
pfam04099	135	pfam04099, Sybindin, Sybindin-like family	1e-51
COG5122	134	COG5122, TRS23, Transport protein particle (TRAPP)	5e-12
pfam04628	127	pfam04628, Sedlin_N, Sedlin, N-terminal conserved	1e-05

>gnl|CDD|146632 pfam04099, Sybindin, Sybindin-like family

 Score =  159 bits (405), Expect = 1e-51
 Identities = 54/135 (40%), Positives = 77/135 (57%)

Query: 3   VYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFL 62
           +++ Y+F+  G L+YY EW+R K  G     E KL+ GML SL +  SK+SPL   +G  
Sbjct: 1   IHSLYIFNRAGGLIYYKEWHRPKQEGKLTTNEYKLLAGMLHSLHAISSKLSPLPGSSGIE 60

Query: 63  SYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREPIK 122
           S +T  + LH  +T TG+KFVL TD      R  L   Y ++Y +YV+KNP  +   PI+
Sbjct: 61  SLETDTFKLHCLQTLTGIKFVLVTDPGTGPNRDSLLRKYYELYSDYVLKNPFYSLEMPIR 120

Query: 123 SDLFQNALDALVKES 137
            +LF   LD  V+  
Sbjct: 121 CELFDEKLDQYVRSL 135

Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses. Length = 135

>gnl|CDD|227451 COG5122, TRS23, Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]

 Score = 58.8 bits (142), Expect = 5e-12
 Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 3/134 (2%)

Query: 1   MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTG 60
           M V  F++ +  G L++  +    +        E  ++   L  + + +++  PL   +G
Sbjct: 1   MAVEQFFIINKSGGLIF--QREFGEGETELNSNEYLILASTLHGVSAILTQTIPLPGSSG 58

Query: 61  FLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREP 120
            L      + + +++T TG KFV   + +  +    L  +YS +Y +YV KNP  +P  P
Sbjct: 59  RLVLYFRNFVMTIFQTTTGTKFVFVAEKRTVNALFQLQKIYS-LYSDYVTKNPFYSPEMP 117

Query: 121 IKSDLFQNALDALV 134
           I+  LF   L  + 
Sbjct: 118 IQCSLFDEHLKRMF 131

Length = 134

>gnl|CDD|218183 pfam04628, Sedlin_N, Sedlin, N-terminal conserved region

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 64  YKTTKYALHLYETPTGLKFVL---NTDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREP 120
                 A+  Y T T +KF+L   ++  +  D+++F   V+ ++Y++ ++ NP   P +P
Sbjct: 54  DSFNDLAVSGYVTNTHIKFILLHDSSTERDDDIKQFFREVH-ELYIKTLM-NPFYEPNDP 111

Query: 121 IKSDLFQNALDALVK 135
           I+S  F   +  L K
Sbjct: 112 IRSPAFDAKVRRLAK 126

Mutations in this protein are associated with the X-linked spondyloepiphyseal dysplasia tarda syndrome (OMIM:313400). This family represents an N-terminal conserved region. Length = 127

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	143
KOG3368|consensus	140		100.0
PF04099	142	Sybindin: Sybindin-like family ; InterPro: IPR0072	100.0
KOG3369|consensus	199		100.0
COG5122	134	TRS23 Transport protein particle (TRAPP) complex s	100.0
PF04628	132	Sedlin_N: Sedlin, N-terminal conserved region; Int	99.96
KOG3487|consensus	139		99.95
COG5603	136	TRS20 Subunit of TRAPP, an ER-Golgi tethering comp	99.94
KOG3444|consensus	121		99.82
KOG0861|consensus	198		95.91
PF01217	141	Clat_adaptor_s: Clathrin adaptor complex small cha	95.64
PF03164	415	Mon1: Trafficking protein Mon1; InterPro: IPR00435	95.32
PF13774	83	Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3	92.87

>KOG3368|consensus

Probab=100.00  E-value=2.3e-48  Score=276.67  Aligned_cols=138  Identities=66%  Similarity=1.113  Sum_probs=133.5

Q ss_pred             CeEEEEEEEeCCCCeeEEeeeccccCCCCCCchhHHHHHHHHHhHHHHHHhhCCCCCCCceeEeeccceEEEEEecCCce
Q psy2725           1 MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGL   80 (143)
Q Consensus         1 M~iy~~~I~~r~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~l~sL~~i~~kls~~~~~~~~~~~~t~~ykl~~~~T~Tg~   80 (143)
                      |+||+||||||+|+|||++||.++++++...++|+||++||++||+.+++|++|.+.++||.+++|+.||+|.||||||+
T Consensus         1 Mtiy~~yIFdR~g~Cl~y~EW~r~~~s~~~~eee~KL~yGmlFSlkS~v~Kls~~d~k~~f~sy~Ts~YklhfyeTptgl   80 (140)
T KOG3368|consen    1 MTIYNFYIFDRNGVCLFYREWNRTKQSGIPNEEEAKLMYGMLFSLKSFVSKLSPGDVKDGFLSYKTSKYKLHFYETPTGL   80 (140)
T ss_pred             CeEEEEEEEcCCccEEEehhcccccccCCchhHHHHHHHHHHhhHHHHHHhcCCCCcccCeeEEeeceeEEEEEEcCCCc
Confidence            99999999999999999999999998888778889999999999999999999998889999999999999999999999


Q ss_pred             EEEEEecCCchhHHHHHHHHHHhhhhhhhhcCCCCC--CCCCccchhHHHHHHHHHHhcc
Q psy2725          81 KFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLIN--PREPIKSDLFQNALDALVKESS  138 (143)
Q Consensus        81 KFvl~td~~~~~i~~~l~~iy~~lYv~~v~kNPfy~--~~~pI~s~~F~~~v~~~~~~~~  138 (143)
                      ||||+||++++++|++|+.||+.+||+||++||+|+  +++||+|+.|...+++.++++|
T Consensus        81 k~vl~Tdpk~~~ir~vLq~IYs~lyVE~Vvknpl~~~~~~~~i~~E~fr~~ld~~vrsl~  140 (140)
T KOG3368|consen   81 KFVLNTDPKAGSIRDVLQYIYSHLYVEYVVKNPLYTYDPGSPIRSELFRKILDRFVRSLP  140 (140)
T ss_pred             EEEEecCCCcccHHHHHHHHHHHHHHHHHHcCcccccCCCCccchHHHHHHHHhhhccCC
Confidence            999999999999999999999779999999999999  9999999999999999999765

>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses

Probab=100.00  E-value=5.5e-48  Score=283.05  Aligned_cols=134  Identities=47%  Similarity=0.825  Sum_probs=104.0

Q ss_pred             EEEEEEEeCCCCeeEEeeeccccCC--CCCCchhHHHHHHHHHhHHHHHHhhCCC------CCCCceeEeeccceEEEEE
Q psy2725           3 VYNFYLFDSFGTLLYYAEWNRLKHS--GMPREEEGKLMYGMLFSLKSFVSKISPL------DSKTGFLSYKTTKYALHLY   74 (143)
Q Consensus         3 iy~~~I~~r~g~~iy~~~~~~~~~~--~~~~~~~~~ll~g~l~sL~~i~~kls~~------~~~~~~~~~~t~~ykl~~~   74 (143)
                      ||+||||||+|+|||+++|.+.++.  +...+||.++|+|++|||++|+.+++|.      ++.+|+++++|++||+|||
T Consensus         1 IyslyI~nr~G~lIy~~~~~~~~~~~~~~~~~ne~~ll~g~l~sl~~i~~klsp~~~~~~~~~~~g~~~~~T~~yklh~~   80 (142)
T PF04099_consen    1 IYSLYIFNRSGGLIYYREWNRSKNEGQPKLSSNEYKLLAGMLHSLKAIASKLSPVDSKPNEPGSSGFESFETDTYKLHCF   80 (142)
T ss_dssp             EEEEEEE-TTS-EEEEEETSSSS--E-SSSCHHHHHHHHHHHHHHHHHHHHT-SSSSSS-SSS--SEEEEEESS-EEEEE
T ss_pred             CeEEEEEeCCcceeeehhhCCCCccccCCCChhHHHHHHhhHHHHHHHHHHhCCCCcccccccceeEEEEEeCCEEEEEE
Confidence            7999999999999999999986532  2346889999999999999999999993      3346899999999999999


Q ss_pred             ecCCceEEEEEecCCchhHHHHHHHHHHhhhhhhhhcCCCCCCCCCccchhHHHHHHHHHHh
Q psy2725          75 ETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREPIKSDLFQNALDALVKE  136 (143)
Q Consensus        75 ~T~Tg~KFvl~td~~~~~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~s~~F~~~v~~~~~~  136 (143)
                      ||+||+|||++||++.+++++.|.++|.++|+|||+|||||++||||+|++||++|++++++
T Consensus        81 eT~TGlKFvl~td~~~~~~~~~l~~~~~~lY~dyV~KNPfy~~~~pI~~~lF~~~l~~~~~~  142 (142)
T PF04099_consen   81 ETPTGLKFVLITDPNVPSLRDELLRIYYELYVDYVVKNPFYSLEMPIRCELFDTKLDQYVKS  142 (142)
T ss_dssp             E-TTS-EEEEEE-TTCCHCHHHHHHHHHHHHHHHHHS-TTS-TTS----HHHHHHHHHHHHC
T ss_pred             EcCcCcEEEEEecCCCccHHHHHHHHHHHHHHHHHhhCCCCCCCCcEehHHHHHHHHHHHhC
Confidence            99999999999999986665555444449999999999999999999999999999999874

Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.

>KOG3369|consensus

Probab=100.00  E-value=2.3e-40  Score=245.96  Aligned_cols=136  Identities=25%  Similarity=0.518  Sum_probs=124.4

Q ss_pred             CeEEEEEEEeCCCCeeEEeeeccccC------------------------------------------------------
Q psy2725           1 MTVYNFYLFDSFGTLLYYAEWNRLKH------------------------------------------------------   26 (143)
Q Consensus         1 M~iy~~~I~~r~g~~iy~~~~~~~~~------------------------------------------------------   26 (143)
                      |+|++++|+||+|++||++++..+.+                                                      
T Consensus         1 maI~~~~IINKsGgLIfq~e~~~~~~e~et~d~~l~~~~~~~vvaf~~kdgik~~~~~~~vNg~~v~g~~~~~Gl~~~~~   80 (199)
T KOG3369|consen    1 MAIESLFIINKSGGLIFQREFGNPRQELETFDLLLLASDLKVVVAFGSKDGIKVGHLVQAVNGENVNGYILYDGLSSPRN   80 (199)
T ss_pred             CceEEEEEEecCCcEEEEeecCCccccccchhhhhhhcccceeEEeecccccchhheeeeecccccccceecccccCccc
Confidence            89999999999999999999972110                                                      


Q ss_pred             --------CCCCCchhHHHHHHHHHhHHHHHHhhCCCCCCCceeEeeccceEEEEEecCCceEEEEEecCCchhHHHHHH
Q psy2725          27 --------SGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLA   98 (143)
Q Consensus        27 --------~~~~~~~~~~ll~g~l~sL~~i~~kls~~~~~~~~~~~~t~~ykl~~~~T~Tg~KFvl~td~~~~~i~~~l~   98 (143)
                              .++...||...|++++||+.+|+++++|.++++|++..+|++|++|||+|.||+|||+++++..+.++.+|+
T Consensus        81 ypv~~~f~~p~~ttNEkL~las~fhsl~aI~~qlsp~~ksSGie~LetdtF~l~~~QTlTG~KFVvis~~~~~~aD~lLr  160 (199)
T KOG3369|consen   81 YPVNGKFGRPKLTTNEKLILASSFHSLFAISTQLSPEPKSSGIEVLETDTFTLHIFQTLTGTKFVVIAEPGTQGADSLLR  160 (199)
T ss_pred             cccccccCCCcccccchhhhhhhhcchhheeeccCCCCCCCceEEEEeccEEEEEEEccCCcEEEEEecCCchhHHHHHH
Confidence                    011246788889999999999999999998889999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhhhhcCCCCCCCCCccchhHHHHHHHHHHhc
Q psy2725          99 SVYSKVYVEYVVKNPLINPREPIKSDLFQNALDALVKES  137 (143)
Q Consensus        99 ~iy~~lYv~~v~kNPfy~~~~pI~s~~F~~~v~~~~~~~  137 (143)
                      +|| ++|.|||+|||||+++|||+|++||++++.++.+.
T Consensus       161 KiY-elYsDyvlKNPfYSlEMPIRc~lFDe~lk~~le~~  198 (199)
T KOG3369|consen  161 KIY-ELYSDYVLKNPFYSLEMPIRCELFDEKLKFLLESA  198 (199)
T ss_pred             HHH-HHHHHHhhcCCccCcccceeHHHhhHHHHHHHhhc
Confidence            999 99999999999999999999999999999998865

>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]

Probab=100.00  E-value=1.3e-35  Score=206.87  Aligned_cols=134  Identities=24%  Similarity=0.486  Sum_probs=123.1

Q ss_pred             CeEEEEEEEeCCCCeeEEeeeccccCCCCCCchhHHHHHHHHHhHHHHHHhhCCCCCCCceeEeeccceEEEEEecCCce
Q psy2725           1 MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGL   80 (143)
Q Consensus         1 M~iy~~~I~~r~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~l~sL~~i~~kls~~~~~~~~~~~~t~~ykl~~~~T~Tg~   80 (143)
                      |++..|.|+||+|++||+|+|.++.  ....+||+..|+|.+|+..+|+.++.|-.++.|++...++++.++.|+|.||+
T Consensus         1 mave~~~iINksGglifqref~~~e--t~lnsneyLiLastlhgV~aI~tq~~p~~gssg~~~l~~~~f~m~I~qT~TG~   78 (134)
T COG5122           1 MAVEQFFIINKSGGLIFQREFGEGE--TELNSNEYLILASTLHGVSAILTQTIPLPGSSGRLVLYFRNFVMTIFQTTTGT   78 (134)
T ss_pred             CceeEEEEEecCCcEEEEEeccCCc--cccCcccEEEEeechhhhhhhhhhcccCCCCCceEEEEeccEEEEEEEecCCc
Confidence            8999999999999999999997632  22257899999999999999999999977778999999999999999999999


Q ss_pred             EEEEEecCCchhHHHHHHHHHHhhhhhhhhcCCCCCCCCCccchhHHHHHHHHHHhc
Q psy2725          81 KFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREPIKSDLFQNALDALVKES  137 (143)
Q Consensus        81 KFvl~td~~~~~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~s~~F~~~v~~~~~~~  137 (143)
                      |||+++..+..+.+--++++| ++|+|||+|||||.++|||+|.+||.++++++.++
T Consensus        79 kFV~~~~k~t~na~~ql~kiY-~lYsdYV~knPfys~EMPI~c~lFde~lkrm~e~~  134 (134)
T COG5122          79 KFVFVAEKRTVNALFQLQKIY-SLYSDYVTKNPFYSPEMPIQCSLFDEHLKRMFEGH  134 (134)
T ss_pred             EEEEEecCCchhHHHHHHHHH-HHHHHHhhcCCCCCcccceehhhhhHHHHHHhcCC
Confidence            999999888888887899999 99999999999999999999999999999988764

>PF04628 Sedlin_N: Sedlin, N-terminal conserved region; InterPro: IPR006722 Sedlin is a 140 amino-acid protein with a putative role in endoplasmic reticulum-to-Golgi transport

Probab=99.96  E-value=2.1e-28  Score=177.24  Aligned_cols=125  Identities=28%  Similarity=0.400  Sum_probs=92.4

Q ss_pred             EEeCCCCeeEEeeeccccCCCCCCchhHHHHHHHHHh-HHHHHHhhCCCCCCCcee-EeeccceEEEEEecCCceEEEEE
Q psy2725           8 LFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFS-LKSFVSKISPLDSKTGFL-SYKTTKYALHLYETPTGLKFVLN   85 (143)
Q Consensus         8 I~~r~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~l~s-L~~i~~kls~~~~~~~~~-~~~t~~ykl~~~~T~Tg~KFvl~   85 (143)
                      |||++++|||.+++...+...  .+.+..++..++|+ |+.+.++++.......+. .+++++|++|||+|+||+||||+
T Consensus         1 IIg~~n~PLy~~~~~~~~~~~--~~~~~~l~~~~~h~sLD~iee~~~~~~~~~yLg~l~~~~~~~vygyvT~t~~Kfvl~   78 (132)
T PF04628_consen    1 IIGPNNNPLYIRSFPSEKESS--SSDARHLYQFIAHSSLDVIEEKLWKSSSDMYLGLLDPFEDYKVYGYVTNTGIKFVLV   78 (132)
T ss_dssp             EE-TTS-EEEEEEE--ST-CG--HHHHHHHHHHHHHHHHHHHHHCCHCSSSCSEEEEEEEETTEEEEEEETTT--EEEEE
T ss_pred             CCCCCCcceEEEecCCCcccc--cchHHHHHHHHHHHHHHHHHHHHhhcccccccCceehhhhHHHHhhhccCceeEEEE
Confidence            899999999999998743210  01122346677776 666766666523334444 46899999999999999999999


Q ss_pred             ec-----CCchhHHHHHHHHHHhhhhhhhhcCCCCCCCCCccchhHHHHHHHHHHh
Q psy2725          86 TD-----VQAQDVRKFLASVYSKVYVEYVVKNPLINPREPIKSDLFQNALDALVKE  136 (143)
Q Consensus        86 td-----~~~~~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~s~~F~~~v~~~~~~  136 (143)
                      ++     .+++++|++|++|| ++|++ +++||||++++||+|+.|+++|++++++
T Consensus        79 ~~~~~~~~~d~~ik~fF~~vh-~~Y~~-~~~NPF~~~~~~I~S~~Fd~~v~~l~~k  132 (132)
T PF04628_consen   79 HDMSDNSIRDEDIKQFFKEVH-ELYVK-ALCNPFYQPGTPIKSPKFDSRVRALAKK  132 (132)
T ss_dssp             ECGGG-S--HHHHHHHHHHHH-HHHHH-HHTSTTCGCT-HHHHHHHHHHHHHHHHH
T ss_pred             EecccCCcchHHHHHHHHHHH-HHHHH-HccCCCCCCCCCcCCHHHHHHHHHHhcC
Confidence            98     35789999999999 99999 6789999999999999999999999875

Several missense mutations and deletion mutations in the SEDL gene, which result in protein truncation by frame shift, are responsible for spondyloepiphyseal dysplasia tarda, a progressive skeletal disorder (OMIM:313400). [].; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005622 intracellular; PDB: 3PR6_A 2J3W_A 1H3Q_A.

>KOG3487|consensus

Probab=99.95  E-value=2.7e-27  Score=167.86  Aligned_cols=134  Identities=19%  Similarity=0.334  Sum_probs=114.4

Q ss_pred             CeEEEEEEEeCCCCeeEEeeeccccCCCCCCchhHHHHHHHHHhHHHHHHhhCCCCCCCceeEe-eccceEEEEEecCCc
Q psy2725           1 MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSY-KTTKYALHLYETPTG   79 (143)
Q Consensus         1 M~iy~~~I~~r~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~l~sL~~i~~kls~~~~~~~~~~~-~t~~ykl~~~~T~Tg   79 (143)
                      |+- +|.|+|+.++|+|+.+|..+.++...+++...|...++||..++++++.|..++..++.+ +.+++-+++|+|++|
T Consensus         1 m~~-yfaIig~~d~Pvye~e~~~~~~~~~~~~~~~~LN~FI~HAaLdiVde~~W~~snmYLktVDkfne~~VSAyvTas~   79 (139)
T KOG3487|consen    1 MTA-YFAIIGHCDNPVYEMEFGCPENSKAARDDNRHLNQFIVHAALDIVDELQWTTSNMYLKTVDKFNELFVSAYVTASH   79 (139)
T ss_pred             Cce-EEEEEecCCCceEEeecCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcceeEEEEEccCc
Confidence            453 799999999999999998643332223445557778999999999999998766667765 689999999999999


Q ss_pred             eEEEEEecCCc-hhHHHHHHHHHHhhhhhhhhcCCCCCCCCCccchhHHHHHHHHHHhc
Q psy2725          80 LKFVLNTDVQA-QDVRKFLASVYSKVYVEYVVKNPLINPREPIKSDLFQNALDALVKES  137 (143)
Q Consensus        80 ~KFvl~td~~~-~~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~s~~F~~~v~~~~~~~  137 (143)
                      +||++++..++ ++++.||+++| ++|++. ++||||++++||+|+.||.+++.+.+++
T Consensus        80 i~f~mlh~~~~~~~ik~Ffqev~-elyik~-lmnpFy~~~dpirs~afd~kv~~~~rkh  136 (139)
T KOG3487|consen   80 IRFIMLHINRADDNIKLFFQEVH-ELYIKT-LMNPFYEINDPIRSPAFDHKVRGLARKH  136 (139)
T ss_pred             EEEEEEeeccccccHHHHHHHHH-HHHHHH-HhCcccccCCccccHHHHHHHHHHHHHH
Confidence            99999999875 68999999999 999995 6699999999999999999999998875

>COG5603 TRS20 Subunit of TRAPP, an ER-Golgi tethering complex [Cell motility and secretion]

Probab=99.94  E-value=2.5e-26  Score=161.09  Aligned_cols=132  Identities=19%  Similarity=0.323  Sum_probs=108.0

Q ss_pred             CeEEEEEEEeCCCCeeEEeeeccccCCCCCCchhHHHHH-HHHHhHHHHHHhhCCCCCCCceeEe-eccceEEEEEecCC
Q psy2725           1 MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMY-GMLFSLKSFVSKISPLDSKTGFLSY-KTTKYALHLYETPT   78 (143)
Q Consensus         1 M~iy~~~I~~r~g~~iy~~~~~~~~~~~~~~~~~~~ll~-g~l~sL~~i~~kls~~~~~~~~~~~-~t~~ykl~~~~T~T   78 (143)
                      |+ -++.|+++.++|+|++++....  ++...+..+++. .++||..++++.+.|...+..+.++ ...+..|++|.||+
T Consensus         1 M~-~y~aIIg~KdnpVYe~e~~~~n--~~~d~~~~~~ln~fiihaSlDiv~~lqwsvN~~Y~~~~d~f~~l~IsAYi~pS   77 (136)
T COG5603           1 MG-EYLAIIGEKDNPVYEREYDPIN--KTSDGEYCRLLNQFIIHASLDIVVWLQWSVNTSYFDCLDSFGDLRISAYIMPS   77 (136)
T ss_pred             CC-ceEEEEecCCCceeeeeecCcC--cccCHHHHHHHhHHhhhhhHHHHHHHHHHhhhHHHHHHHhhCCeEEEEEEccC
Confidence            44 3589999999999999998532  122344555554 6889888888888886555566655 47788999999999


Q ss_pred             ceEEEEEecCC-chhHHHHHHHHHHhhhhhhhhcCCCCCCCCCccchhHHHHHHHHHHhc
Q psy2725          79 GLKFVLNTDVQ-AQDVRKFLASVYSKVYVEYVVKNPLINPREPIKSDLFQNALDALVKES  137 (143)
Q Consensus        79 g~KFvl~td~~-~~~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~s~~F~~~v~~~~~~~  137 (143)
                      |+||+++|... ..++|.||+++| ++|+++ ++||||++++||+|+.||.+|+++.|.+
T Consensus        78 gmkf~~iH~n~s~~N~rsF~qevH-ely~kt-Lmspfy~~~~pirsqafd~~Vr~~ar~~  135 (136)
T COG5603          78 GMKFLFIHQNQSRKNARSFLQEVH-ELYAKT-LMSPFYEPDEPIRSQAFDDGVREAARVC  135 (136)
T ss_pred             CceEEEEeccchhhhHHHHHHHHH-HHHHHH-hhCcccCCCccccchhhhhhHHHHHHhh
Confidence            99999999765 578999999999 999996 5699999999999999999999998864

>KOG3444|consensus

Probab=99.82  E-value=9.8e-20  Score=126.10  Aligned_cols=107  Identities=24%  Similarity=0.356  Sum_probs=90.6

Q ss_pred             EEEEEEEeCCCCeeEEeeeccccCCCCCCchhHHHHHHHHHhHHHHHHhhCCCC-C----CCce--eEeeccceEEEEEe
Q psy2725           3 VYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLD-S----KTGF--LSYKTTKYALHLYE   75 (143)
Q Consensus         3 iy~~~I~~r~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~l~sL~~i~~kls~~~-~----~~~~--~~~~t~~ykl~~~~   75 (143)
                      +.++.++++.++|+|.+.+..       .+++.++.+.+..||+.+.++++..+ +    ++-|  .+++|++||+|+|+
T Consensus         2 ~v~~av~g~kn~~lyi~s~t~-------~e~~L~~~y~v~~sLDVieekvn~~gkg~~tsne~fLGLLy~ted~kvYgfv   74 (121)
T KOG3444|consen    2 LVCLAVAGPKNEPLYIESITP-------KEKELKLHYQVHLSLDVIEEKVNDPGKGERTSNELFLGLLYPTEDYKVYGFV   74 (121)
T ss_pred             EEEEEEEcCCCCccEEEecCc-------HHHHHHhHhhhhhhHHHHHHHhcCcccCccchhhhhhcccccccceeEEEEE
Confidence            457889999999999998864       36788888888899999999996422 1    1222  36799999999999


Q ss_pred             cCCceEEEEEecC-----CchhHHHHHHHHHHhhhhhhhhcCCCCCCC
Q psy2725          76 TPTGLKFVLNTDV-----QAQDVRKFLASVYSKVYVEYVVKNPLINPR  118 (143)
Q Consensus        76 T~Tg~KFvl~td~-----~~~~i~~~l~~iy~~lYv~~v~kNPfy~~~  118 (143)
                      |+|.+|||+++|.     ++.++|++||.+| -+|+| +++||||-|+
T Consensus        75 tNTkVKFIlvvdssd~avreteiRsv~r~~h-~l~td-~~~npfy~pg  120 (121)
T KOG3444|consen   75 TNTKVKFILVVDSSDYAVRETEIRSVFRILH-LLYTD-LSCNPFYLPG  120 (121)
T ss_pred             eccEEEEEEEEcCCcceehhHHHHHHHHHHH-HHHHH-heecceeccC
Confidence            9999999999986     4689999999999 99999 8999999886

>KOG0861|consensus

Probab=95.91  E-value=0.21  Score=38.05  Aligned_cols=97  Identities=21%  Similarity=0.199  Sum_probs=63.2

Q ss_pred             CeEEEEEEEeCCC--CeeEEeeeccccCCCCCCchhHHHHHHHHHhHHHHHHhhCCCCCCCceeEeeccceEEEEEecCC
Q psy2725           1 MTVYNFYLFDSFG--TLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPT   78 (143)
Q Consensus         1 M~iy~~~I~~r~g--~~iy~~~~~~~~~~~~~~~~~~~ll~g~l~sL~~i~~kls~~~~~~~~~~~~t~~ykl~~~~T~T   78 (143)
                      |.||++.|++..+  .-+....+.-   +.-++=.....--+|.|..+.++++..|.    ...+++-++|++|+|+-+.
T Consensus         1 Mki~sl~V~~~~~~~~~ll~~a~dl---s~FsfFqRssV~Efm~F~sktvaeRt~~g----~rqsvk~~~Y~~h~yvrnd   73 (198)
T KOG0861|consen    1 MKIYSLSVLHKGTSDVKLLKTASDL---SSFSFFQRSSVQEFMTFISKTVAERTGPG----QRQSVKHEEYLVHVYVRND   73 (198)
T ss_pred             CceEEEEEEeeCCcchhhhhhhccc---ccccceeeccHHHHHHHHHHHHHHhcCcc----cccccccceeEEEEEEecC
Confidence            8999999999833  2222222211   00000111223345667778888888774    4678999999999999999


Q ss_pred             ceEEEEEecCCch--hHHHHHHHHHHhhh
Q psy2725          79 GLKFVLNTDVQAQ--DVRKFLASVYSKVY  105 (143)
Q Consensus        79 g~KFvl~td~~~~--~i~~~l~~iy~~lY  105 (143)
                      |+-=|+++|..-+  ..-.+|++|- +-|
T Consensus        74 gL~~V~~~D~eYP~rvA~tLL~kvl-d~~  101 (198)
T KOG0861|consen   74 GLCGVLIADDEYPVRVAFTLLNKVL-DEF  101 (198)
T ss_pred             CeeEEEEecCcCchhHHHHHHHHHH-HHH
Confidence            9999999998643  3445566665 444

>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.64  E-value=0.48  Score=34.00  Aligned_cols=91  Identities=19%  Similarity=0.394  Sum_probs=56.1

Q ss_pred             eEEEEEEEeCCCCeeEEeeeccccCCCCCCchhHHHHHHHHHhHHHHHHhhCCCC-CCCceeEeeccceEEEEEecCCce
Q psy2725           2 TVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLD-SKTGFLSYKTTKYALHLYETPTGL   80 (143)
Q Consensus         2 ~iy~~~I~~r~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~l~sL~~i~~kls~~~-~~~~~~~~~t~~ykl~~~~T~Tg~   80 (143)
                      ||.++.|+|++|++++.|-|...      ..++.+.+..-+.      .+....+ ....+  +..+++++ .|.--+++
T Consensus         1 MI~~i~i~n~~G~~i~~k~y~~~------~~~~~~~~~~~~~------~~~~~~~~~~~~i--~~~~~~~~-vy~~~~dl   65 (141)
T PF01217_consen    1 MIKAILILNSQGKRILSKYYRDV------SEEERQKLFEKFI------KKKSSRNSKQSPI--FEHDNYRI-VYKRYSDL   65 (141)
T ss_dssp             SEEEEEEEETTSEEEEEEESSTS------TSHHHHHHHHHHH------HHHHTSSSSSTSE--EEETTEEE-EEEEETTE
T ss_pred             CEEEEEEEcCCCCEEEehhcCCc------cHHHHHHHHHHHH------HHHHhccccccee--eeccccee-eeEeeccE
Confidence            57899999999999999999431      1223222222221      1222221 11222  34455555 66677899


Q ss_pred             EEEEEecCCchh--HHHHHHHHHHhhhhhh
Q psy2725          81 KFVLNTDVQAQD--VRKFLASVYSKVYVEY  108 (143)
Q Consensus        81 KFvl~td~~~~~--i~~~l~~iy~~lYv~~  108 (143)
                      -|+++++.++.+  +-++++.+. ++.-+|
T Consensus        66 ~~~~v~~~~eNel~~~e~l~~~v-~~l~~~   94 (141)
T PF01217_consen   66 YFVVVGDENENELLLLEFLHRLV-EVLDDY   94 (141)
T ss_dssp             EEEEEESSTSBHHHHHHHHHHHH-HHHHHH
T ss_pred             EEEEEeecccchHHHHHHHHHhh-hhhhhh
Confidence            999999987654  466777777 776664

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.

>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain

Probab=95.32  E-value=0.37  Score=41.06  Aligned_cols=85  Identities=19%  Similarity=0.308  Sum_probs=61.8

Q ss_pred             EEEEEeCCCCeeEEeeeccccCCCCCCchhHHHHHHHHHhHHHHHHhhCCCCCCCceeEeeccceEEEEEecCCceEEEE
Q psy2725           5 NFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVL   84 (143)
Q Consensus         5 ~~~I~~r~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~l~sL~~i~~kls~~~~~~~~~~~~t~~ykl~~~~T~Tg~KFvl   84 (143)
                      .|+|+..+|.|||.+. +.        ++..--+.|++.++-.+.+.-.     +.++.+..++.++.+ ..-+.+-+|.
T Consensus        13 h~fIlS~AGKPIysr~-G~--------e~~l~~~~g~~~aiiS~~~~~~-----d~l~~i~~~~~~ivf-l~r~pl~lv~   77 (415)
T PF03164_consen   13 HFFILSSAGKPIYSRY-GD--------EDKLSSLMGVIQAIISFFQSNG-----DELRSIRAGDHRIVF-LNRGPLILVA   77 (415)
T ss_pred             eEEEECCCCceeEEec-CC--------hHHHHHHHHHHHHHHHHHHhCC-----CcEEEEEeCCEEEEE-EecCCEEEEE
Confidence            4789999999999986 21        3344456788888776665322     468888888888884 4588999999


Q ss_pred             EecCCc--hhHHHHHHHHHHhh
Q psy2725          85 NTDVQA--QDVRKFLASVYSKV  104 (143)
Q Consensus        85 ~td~~~--~~i~~~l~~iy~~l  104 (143)
                      ++...+  ..++.-|+-+|..+
T Consensus        78 vS~~~e~~~~l~~qL~~ly~qi   99 (415)
T PF03164_consen   78 VSKTGESESQLRKQLDYLYSQI   99 (415)
T ss_pred             EcCCcCCHHHHHHHHHHHHHHH
Confidence            987654  45788888888443

In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].

>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D

Probab=92.87  E-value=1.2  Score=29.02  Aligned_cols=58  Identities=19%  Similarity=0.426  Sum_probs=43.1

Q ss_pred             HHHHHhhCCCCCCCceeEeeccceEEEEEecCCceEEEEEecCCch--hHHHHHHHHHHhhhhh
Q psy2725          46 KSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQ--DVRKFLASVYSKVYVE  107 (143)
Q Consensus        46 ~~i~~kls~~~~~~~~~~~~t~~ykl~~~~T~Tg~KFvl~td~~~~--~i~~~l~~iy~~lYv~  107 (143)
                      +.+.+++.+.+  ..-.++..++|.+|++. ..|+-++++||...+  -.=.+|++|. +.|.+
T Consensus         3 ~~il~~i~~~~--~~k~s~~~~~~~fh~~~-~~~i~~~citd~~~~~r~aF~fL~~i~-~~F~~   62 (83)
T PF13774_consen    3 RKILKRIPPNG--NSKMSYESGNYVFHYLV-EDGIAYLCITDKSYPKRVAFAFLEEIK-QEFIQ   62 (83)
T ss_dssp             HHHHHTS-TTS--ESEEEEEETTEEEEEEE-ETTEEEEEEEETTS-HHHHHHHHHHHH-HHHHH
T ss_pred             HHHHHhcCCCC--CCeEEEEECCEEEEEEE-cCCeEEEEEEcCCCCcchHHHHHHHHH-HHHHH
Confidence            45677887643  24567889999999999 999999999998754  3556778888 66665

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	143
2j3t_C	145	The Crystal Structure Of The Bet3-Trs33-Bet5-Trs23		2e-36
3cue_C	159	Crystal Structure Of A Trapp Subassembly Activating		1e-12
2j3t_D	219	The Crystal Structure Of The Bet3-Trs33-Bet5-Trs23		8e-05
2zmv_A	227	Crystal Structure Of Synbindin Length = 227		8e-05

>pdb|2J3T|C Chain C, The Crystal Structure Of The Bet3-Trs33-Bet5-Trs23 Complex Length = 145

Iteration: 1
 Score =  147 bits (371), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/135 (51%), Positives = 95/135 (70%)
Query: 1   MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTG 60
           MTV+N YLFD  G  L+Y+EW+R K +G+P+EEE KLMYGMLFS++SFVSK+SPLD K G
Sbjct: 1   MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG 60
Query: 61  FLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLAXXXXXXXXXXXXXNPLINPREP 120
           FLS++T++Y LH YETPTG+K V+NTD+    +R  L              NPL    + 
Sbjct: 61  FLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFVVKNPLCPLGQT 120
Query: 121 IKSDLFQNALDALVK 135
           ++S+LF++ LD+ V+
Sbjct: 121 VQSELFRSRLDSYVR 135

>pdb|3CUE|C Chain C, Crystal Structure Of A Trapp Subassembly Activating The Rab Ypt1p Length = 159

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 6/103 (5%)
Query: 1   MTVYNFYLFDSFGTLLYYAEWNRLKHSGM------PREEEGKLMYGMLFSLKSFVSKISP 54
           M +Y+F++FD     ++  EW    +S          EE+ KL+YGM+FSL+S   K+S 
Sbjct: 1   MGIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSK 60
Query: 55  LDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFL 97
              K    S  T KY +H Y T +GL FVL +D + Q   + L
Sbjct: 61  GSVKNDIRSISTGKYRVHTYCTASGLWFVLLSDFKQQSYTQVL 103

>pdb|2J3T|D Chain D, The Crystal Structure Of The Bet3-Trs33-Bet5-Trs23 Complex Length = 219

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 3/105 (2%)
Query: 28  GMPR--EEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLN 85
           G PR    E  ++  M  SL +  S++SP    +G    +T  + LH Y+T TG+KFV+ 
Sbjct: 99  GRPRLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVL 158
Query: 86  TDVQAQDVRKFLAXXXXXXXXXXXXXNPLINPREPIKSDLFQNAL 130
            D +   +   L              NP  +   PI+ +LF   L
Sbjct: 159 ADPRQAGIDSLL-RKIYEIYSDFALKNPFYSLEMPIRCELFDQNL 202

>pdb|2ZMV|A Chain A, Crystal Structure Of Synbindin Length = 227

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 3/105 (2%)
Query: 28  GMPR--EEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLN 85
           G PR    E  ++  M  SL +  S++SP    +G    +T  + LH Y+T TG+KFV+ 
Sbjct: 99  GRPRLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVL 158
Query: 86  TDVQAQDVRKFLAXXXXXXXXXXXXXNPLINPREPIKSDLFQNAL 130
            D +   +   L              NP  +   PI+ +LF   L
Sbjct: 159 ADPRQAGIDSLL-RKIYEIYSDFALKNPFYSLEMPIRCELFDQNL 202

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	143
2j3t_C	145	Trafficking protein particle complex subunit 1, tr	8e-49
3cue_C	159	Transport protein particle 18 kDa subunit; membran	2e-45
2j3t_D	219	Trafficking protein particle complex subunit 4; tr	2e-30
3cue_A	219	Transport protein particle 23 kDa subunit; membran	3e-16
2j3w_A	142	Sedlin, trafficking protein particle complex prote	2e-09

>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus} Length = 145

 Score =  152 bits (386), Expect = 8e-49
 Identities = 77/139 (55%), Positives = 106/139 (76%)

Query: 1   MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTG 60
           MTV+N YLFD  G  L+Y+EW+R K +G+P+EEE KLMYGMLFS++SFVSK+SPLD K G
Sbjct: 1   MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG 60

Query: 61  FLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREP 120
           FLS++T++Y LH YETPTG+K V+NTD+    +R  L  +YS +YVE+VVKNPL    + 
Sbjct: 61  FLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFVVKNPLCPLGQT 120

Query: 121 IKSDLFQNALDALVKESSI 139
           ++S+LF++ LD+ V+    
Sbjct: 121 VQSELFRSRLDSYVRSLPF 139

>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Length = 159

 Score =  144 bits (365), Expect = 2e-45
 Identities = 48/154 (31%), Positives = 73/154 (47%), Gaps = 19/154 (12%)

Query: 1   MTVYNFYLFDSFGTLLYYAEWNRLKHSG------MPREEEGKLMYGMLFSLKSFVSKISP 54
           M +Y+F++FD     ++  EW    +S          EE+ KL+YGM+FSL+S   K+S 
Sbjct: 1   MGIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSK 60

Query: 55  LDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPL 114
              K    S  T KY +H Y T +GL FVL +D + Q   + L  +YS +YV+YV  N L
Sbjct: 61  GSVKNDIRSISTGKYRVHTYCTASGLWFVLLSDFKQQSYTQVLQYIYSHIYVKYVSNNLL 120

Query: 115 -------------INPREPIKSDLFQNALDALVK 135
                              I +  F + L++ + 
Sbjct: 121 SPYDFAENENEMRGQGTRKITNRNFISVLESFLA 154

>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A Length = 219

 Score =  108 bits (270), Expect = 2e-30
 Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 2/128 (1%)

Query: 8   LFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTT 67
           + +  G    Y    R     +    E  ++  M  SL +  S++SP    +G    +T 
Sbjct: 82  VLEYLGNPANYPVSIRFGRPRLT-SNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETD 140

Query: 68  KYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREPIKSDLFQ 127
            + LH Y+T TG+KFV+  D +   +   L  +Y  +Y ++ +KNP  +   PI+ +LF 
Sbjct: 141 TFKLHCYQTLTGIKFVVLADPRQAGIDSLLRKIYE-IYSDFALKNPFYSLEMPIRCELFD 199

Query: 128 NALDALVK 135
             L   ++
Sbjct: 200 QNLKLALE 207

>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Length = 219

 Score = 71.2 bits (173), Expect = 3e-16
 Identities = 30/136 (22%), Positives = 53/136 (38%), Gaps = 25/136 (18%)

Query: 25  KHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVL 84
           ++ G    +         F    F  +     +K+G     T ++ + +Y+T TGLKFV 
Sbjct: 83  RNGGGNNNKHTNNEKLGSFKGDDFFKEPFTNWNKSGLRQLCTDQFTMFIYQTLTGLKFVA 142

Query: 85  NTD------------------------VQAQDVRKFLASVYSKVYVEYVVKNPLINPREP 120
            +                         +  Q    FL  VY  +Y +YV+K+P  +   P
Sbjct: 143 ISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIADNFLRKVYC-LYSDYVMKDPSYSMEMP 201

Query: 121 IKSDLFQNALDALVKE 136
           I+S+LF   +  +V+ 
Sbjct: 202 IRSNLFDEKVKKMVEN 217

>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A Length = 142

 Score = 51.5 bits (123), Expect = 2e-09
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 3/75 (4%)

Query: 63  SYKTTKYALHLYETPTGLKFVLNTDVQAQD-VRKFLASVYSKVYVEYVVKNPLINPREPI 121
             K  ++ +  + T   ++F++  DV+ +D ++ F   VY  +Y+++ + NP   P  PI
Sbjct: 66  VDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVY-DLYIKFAM-NPFYEPNSPI 123

Query: 122 KSDLFQNALDALVKE 136
           +S  F   +  L K+
Sbjct: 124 RSSAFDRKVQFLGKK 138

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	143
2j3t_C	145	Trafficking protein particle complex subunit 1, tr	100.0
3cue_C	159	Transport protein particle 18 kDa subunit; membran	100.0
3cue_A	219	Transport protein particle 23 kDa subunit; membran	100.0
2j3t_D	219	Trafficking protein particle complex subunit 4; tr	100.0
2j3w_A	142	Sedlin, trafficking protein particle complex prote	100.0
3pr6_A	162	Trapp-associated protein TCA17; longin fold, vesic	99.85
3kyq_A	199	YKT6, synaptobrevin homolog YKT6; V-snare homolog,	97.07
2nut_C	196	Vesicle-trafficking protein SEC22B; human copii SE	96.21
3bw6_A	144	Synaptobrevin homolog YKT6; YKT6P, farnesylation,	95.39
1w63_Q	158	Adapter-related protein complex 1 sigma 1A subunit	95.2
2vgl_S	142	AP-2 complex subunit sigma-1; cytoplasmic vesicle,	92.28
4b93_A	189	Vesicle-associated membrane protein 7; endocytosis	91.97
2vgl_M	435	AP-2 complex subunit MU-1; cytoplasmic vesicle, al	89.16
1w63_M	423	Adaptor-related protein complex 1, MU 1 subunit; e	88.67
2vx8_A	169	Nucleoporin-like protein RIP, vesicle-associated m	86.28

>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}

Probab=100.00  E-value=7.9e-53  Score=308.60  Aligned_cols=142  Identities=54%  Similarity=0.930  Sum_probs=132.1

Q ss_pred             CeEEEEEEEeCCCCeeEEeeeccccCCCCCCchhHHHHHHHHHhHHHHHHhhCCCCCCCceeEeeccceEEEEEecCCce
Q psy2725           1 MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGL   80 (143)
Q Consensus         1 M~iy~~~I~~r~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~l~sL~~i~~kls~~~~~~~~~~~~t~~ykl~~~~T~Tg~   80 (143)
                      |++||||||||+|+|||+++|.++++++.+.+|+.++++|++|||++|++|++|.++++|+++++|++|++|||+|+||+
T Consensus         1 M~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~Tgi   80 (145)
T 2j3t_C            1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGI   80 (145)
T ss_dssp             -CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSC
T ss_pred             CeEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCC
Confidence            99999999999999999999987544343337889999999999999999999987778999999999999999999999


Q ss_pred             EEEEEecCCchhHHHHHHHHHHhhhhhhhhcCCCCCCCCCccchhHHHHHHHHHHhcccccc
Q psy2725          81 KFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREPIKSDLFQNALDALVKESSISLK  142 (143)
Q Consensus        81 KFvl~td~~~~~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~s~~F~~~v~~~~~~~~~~~~  142 (143)
                      ||||+||++++++|++|++||+++|+|||+|||||++|+||+|++||.+|+++++++++|..
T Consensus        81 KFvl~td~~~~~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~s~~Fd~~v~~~~~~~~~f~~  142 (145)
T 2j3t_C           81 KVVMNTDLGVGPIRDVLHHIYSALYVEFVVKNPLCPLGQTVQSELFRSRLDSYVRSLPFFSA  142 (145)
T ss_dssp             EEEEEECTTCCCCHHHHHHHHHTTHHHHTTTCTTSCTTSCCCCHHHHHHHHHHHTTSTTCCC
T ss_pred             EEEEEecCCcchHHHHHHHHHHHHHHHHHhcCCCCCCCCceecHHHHHHHHHHHHhCccchh
Confidence            99999999999999999999988999999999999999999999999999999999999864

>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.6e-48  Score=286.69  Aligned_cols=139  Identities=33%  Similarity=0.579  Sum_probs=123.6

Q ss_pred             CeEEEEEEEeCCCCeeEEeeeccccC------CCCCCchhHHHHHHHHHhHHHHHHhhCCCCCCCceeEeeccceEEEEE
Q psy2725           1 MTVYNFYLFDSFGTLLYYAEWNRLKH------SGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLY   74 (143)
Q Consensus         1 M~iy~~~I~~r~g~~iy~~~~~~~~~------~~~~~~~~~~ll~g~l~sL~~i~~kls~~~~~~~~~~~~t~~ykl~~~   74 (143)
                      |+|||||||||+|+|||+++|.+.++      +++..+|+.++++|++|||++|++|++|.+..++|.+++|++||+|||
T Consensus         1 M~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~~~~~~f~~~~T~~ykl~~~   80 (159)
T 3cue_C            1 MGIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKGSVKNDIRSISTGKYRVHTY   80 (159)
T ss_dssp             CCCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCSSSCCCEEEEECSSCBEEEE
T ss_pred             CeEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEeeCCEEEEEE
Confidence            99999999999999999999976321      112246789999999999999999999987778999999999999999


Q ss_pred             ecCCceEEEEEecCCchhHHHHHHHHHHhhhhhhhhcCC-----CCCCC--------CCccchhHHHHHHHHHHhccc
Q psy2725          75 ETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNP-----LINPR--------EPIKSDLFQNALDALVKESSI  139 (143)
Q Consensus        75 ~T~Tg~KFvl~td~~~~~i~~~l~~iy~~lYv~~v~kNP-----fy~~~--------~pI~s~~F~~~v~~~~~~~~~  139 (143)
                      ||+||+||||+||++++++|++|++||+++|||||+|||     ||+++        |||+|++||.+|++++++++.
T Consensus        81 eT~TgiKFvl~td~~~~~i~~~l~~iy~~lYv~yv~kNPl~~~~Fy~~~~~~~~~~~~pI~s~~Fd~~l~~~~~~~~~  158 (159)
T 3cue_C           81 CTASGLWFVLLSDFKQQSYTQVLQYIYSHIYVKYVSNNLLSPYDFAENENEMRGQGTRKITNRNFISVLESFLAPMVN  158 (159)
T ss_dssp             CCSSCCEEEEECCSSSSCTHHHHHHHHHHHHHHHHHSCTTSCCSCCCSCTTTTTSCCCCCCCHHHHHHHHHHTSCC--
T ss_pred             EeCCCCEEEEEeCCCcchHHHHHHHHHHHHHHHHHHhCCCccccccccccccccccCcCcccHHHHHHHHHHHHhccC
Confidence            999999999999999999999999999339999999999     99999        999999999999999998874

>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-46  Score=287.72  Aligned_cols=135  Identities=26%  Similarity=0.475  Sum_probs=123.6

Q ss_pred             CeEEEEEEEeCCCCeeEEeeeccccCCCCCCchhHHHHHHHHHhHHHHHHhhCCCC------------------------
Q psy2725           1 MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLD------------------------   56 (143)
Q Consensus         1 M~iy~~~I~~r~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~l~sL~~i~~kls~~~------------------------   56 (143)
                      |+||+||||||+|+|||+++|.+..+  +..+||+++|+|++||+++|+.+++|..                        
T Consensus         1 M~i~sl~IiNk~GglIY~r~~~~~~~--~l~snd~l~lag~lhsv~ai~~~ltP~~~~~~~~~~~~~~~~~~~~~g~~~~   78 (219)
T 3cue_A            1 MAIETILVINKSGGLIYQRNFTNDEQ--KLNSNEYLILASTLHGVFAIASQLTPKALQLTQQTNIENTIPYIPYVGMSSN   78 (219)
T ss_dssp             -CEEEEEEECTTSCEEEEEECSSCCC--CSCHHHHHHHHHHHHHHHHHHHHTCCSCC-----------CCCCCSCCC---
T ss_pred             CeeEEEEEEeCCCCEEeehhhccCcC--CCCcchhhhhhhhhHHHHHHHhhcCCCccccccccccccccccccccccccc
Confidence            99999999999999999999986432  2358899999999999999999999964                        


Q ss_pred             ------------------------------------CCCceeEeeccceEEEEEecCCceEEEEEecCCc----------
Q psy2725          57 ------------------------------------SKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQA----------   90 (143)
Q Consensus        57 ------------------------------------~~~~~~~~~t~~ykl~~~~T~Tg~KFvl~td~~~----------   90 (143)
                                                          +..|++++.|++|++|||+|+||+||||+||++.          
T Consensus        79 ~~~s~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~  158 (219)
T 3cue_A           79 RSDTRNGGGNNNKHTNNEKLGSFKGDDFFKEPFTNWNKSGLRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATT  158 (219)
T ss_dssp             -------------------------CCSCCSCCCCCCSSSCCEEEESSCEEEEEECTTSCEEEEEESSCC----------
T ss_pred             ccccccccccccccccccccccccccccccccccccCCCceEEEEeCCEEEEEEEcCCCCEEEEEecCCCcccccccccc
Confidence                                                1347999999999999999999999999999987          


Q ss_pred             --------------hhHHHHHHHHHHhhhhhhhhcCCCCCCCCCccchhHHHHHHHHHHhcc
Q psy2725          91 --------------QDVRKFLASVYSKVYVEYVVKNPLINPREPIKSDLFQNALDALVKESS  138 (143)
Q Consensus        91 --------------~~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~s~~F~~~v~~~~~~~~  138 (143)
                                    +++|++|++|| ++|||||||||||++||||+|++||.+|++++++++
T Consensus       159 ~~~~~~~~~s~l~e~~ir~ff~~VY-elYvd~VmkNPFY~~~~pI~S~~Fd~~V~~~~~~~~  219 (219)
T 3cue_A          159 DKPDRPKSTSNLAIQIADNFLRKVY-CLYSDYVMKDPSYSMEMPIRSNLFDEKVKKMVENLQ  219 (219)
T ss_dssp             ----------CHHHHHHHHHHHHHH-HHHHHHHHSCTTCCTTSCCCCHHHHHHHHHHHHHHC
T ss_pred             cccccccccccchHHHHHHHHHHHH-HHHHHHHhcCCCCCCCCccccHHHHHHHHHHHHhcC
Confidence                          88999999999 999999999999999999999999999999999864

>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A

Probab=100.00  E-value=2.7e-43  Score=272.02  Aligned_cols=106  Identities=28%  Similarity=0.546  Sum_probs=100.1

Q ss_pred             hhHHHHHHHHHhHHHHHHhhCCCCCCCceeEeeccceEEEEEecCCceEEEEEecCCchhHHHHHHHHHHhhhhhhhhcC
Q psy2725          33 EEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKN  112 (143)
Q Consensus        33 ~~~~ll~g~l~sL~~i~~kls~~~~~~~~~~~~t~~ykl~~~~T~Tg~KFvl~td~~~~~i~~~l~~iy~~lYv~~v~kN  112 (143)
                      |+.++++|++|||++|+++++|.+++.|+++++|++|++|||+|+||+||||+||++++++|++|++|| ++|+|||+||
T Consensus       106 n~~L~lag~lhSLd~i~~klsp~~~s~g~~~~~T~~ykl~~y~T~TgiKFVLltd~~~~~ir~~l~~Iy-elYvd~V~kN  184 (219)
T 2j3t_D          106 NEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGIDSLLRKIY-EIYSDFALKN  184 (219)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCSSSSCCSCSEEEESSCEEEEEECTTSCEEEEEECTTCCCHHHHHHHHH-HHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHHHHhCCCCCCCCeeEEecCceEEEEEEcCCCCEEEEEecCCchHHHHHHHHHH-HHHHHHhccC
Confidence            455678999999999999999977677999999999999999999999999999999999999999999 9999999999


Q ss_pred             CCCCCCCCccchhHHHHHHHHHHhccc
Q psy2725         113 PLINPREPIKSDLFQNALDALVKESSI  139 (143)
Q Consensus       113 Pfy~~~~pI~s~~F~~~v~~~~~~~~~  139 (143)
                      |||++++||+|++||++|++++++++-
T Consensus       185 PFY~~~~pI~s~~Fd~~v~~l~~~~~~  211 (219)
T 2j3t_D          185 PFYSLEMPIRCELFDQNLKLALEVAEK  211 (219)
T ss_dssp             TTCCTTSCCCCHHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCccchHHHHHHHHHHHHHhhc
Confidence            999999999999999999999998763

>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A

Probab=100.00  E-value=4e-41  Score=245.51  Aligned_cols=134  Identities=17%  Similarity=0.356  Sum_probs=116.2

Q ss_pred             Ce-EEEEEEEeCCCCeeEEeeeccccCCCCCCchhHHHHH-HHHHhHHHHHHhhCCCCCCCc-eeEeeccceEEEEEecC
Q psy2725           1 MT-VYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMY-GMLFSLKSFVSKISPLDSKTG-FLSYKTTKYALHLYETP   77 (143)
Q Consensus         1 M~-iy~~~I~~r~g~~iy~~~~~~~~~~~~~~~~~~~ll~-g~l~sL~~i~~kls~~~~~~~-~~~~~t~~ykl~~~~T~   77 (143)
                      |+ +|+|+||||+|+|||+++|.+..+  ...+++.++++ +++||+.+++++++|.++... ..+.++++|++|||+|+
T Consensus         3 M~~i~~~~Ii~~~~~ply~~~~~~~~~--~~~~~~~~l~~~~i~hs~ldiv~~~~~~~~~~~l~~~~~~~~y~v~~~~T~   80 (142)
T 2j3w_A            3 MSGSFYFVIVGHHDNPVFEMEFLPPGK--AESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTA   80 (142)
T ss_dssp             CCCCEEEEEECTTSCEEEEEEECCSCC--GGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECT
T ss_pred             cceEEEEEEEeCCCCEEEEEecCCcCc--CCccHHHHHHHHHHHHHHHHHHHHhcCCCCcceeEeeecccceEEEEEEcC
Confidence            78 999999999999999999987432  12345666777 899999999999998643222 24568999999999999


Q ss_pred             CceEEEEEecCC-chhHHHHHHHHHHhhhhhhhhcCCCCCCCCCccchhHHHHHHHHHHhcc
Q psy2725          78 TGLKFVLNTDVQ-AQDVRKFLASVYSKVYVEYVVKNPLINPREPIKSDLFQNALDALVKESS  138 (143)
Q Consensus        78 Tg~KFvl~td~~-~~~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~s~~F~~~v~~~~~~~~  138 (143)
                      ||+|||++||++ ++++|++|++|| ++|+|+|+ ||||++|+||+|+.||++|+++++++-
T Consensus        81 tg~Kfvl~~d~~~~~~i~~~~~~iy-~~Y~~~v~-NPfy~~~~pI~s~~Fd~~v~~~~~~~l  140 (142)
T 2j3w_A           81 GHMRFIMLHDVRQEDGIKNFFTDVY-DLYIKFAM-NPFYEPNSPIRSSAFDRKVQFLGKKHL  140 (142)
T ss_dssp             TCCEEEEEESSCCHHHHHHHHHHHH-HHHHHHHH-STTCCTTCCCCCHHHHHHHHHHHHHHT
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHH-HHHHHHhc-CCCCCCCCceecHHHHHHHHHHHHHhc
Confidence            999999999994 899999999999 99999877 999999999999999999999999863

>3pr6_A Trapp-associated protein TCA17; longin fold, vesicle tethering regulation, trapp complex, TR network, transport protein; 1.80A {Saccharomyces cerevisiae}

Probab=99.85  E-value=1.8e-20  Score=138.48  Aligned_cols=108  Identities=19%  Similarity=0.184  Sum_probs=80.7

Q ss_pred             EEEEEeCCCCeeEEeeeccccCCCCCCchhHHHHHHHHH-hHHHHHHhhC-CCCCC--Ccee-EeeccceEEEEEe-cCC
Q psy2725           5 NFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLF-SLKSFVSKIS-PLDSK--TGFL-SYKTTKYALHLYE-TPT   78 (143)
Q Consensus         5 ~~~I~~r~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~l~-sL~~i~~kls-~~~~~--~~~~-~~~t~~ykl~~~~-T~T   78 (143)
                      .+.||||+++|||.+.+.....   ..+++.+. ..++| ||+.+.++++ |....  .++. .++++++++|||+ |+|
T Consensus        12 FVaIIg~~n~PLyI~~~~~~~~---~~~~~Lk~-~fi~hsSLDi~Ee~~~~~~s~~~~~~LglL~~~e~~~VYGy~iTnt   87 (162)
T 3pr6_A           12 FVSLIDESDKPILIYVPNEAEN---EMNDVLKY-NVLSNISLDYFESALVEWHSLDSKPLLKSIFQLEGVSVFAMLIKQT   87 (162)
T ss_dssp             EEEEECTTSCEEEEECCC----------CHHHH-HHHHHHHHHHHHCTTCCCCCSSSSCCCEEEEEETTEEEEEEECTTT
T ss_pred             EEEEECCCCceeEEEeCCCccc---cccchhHH-HHHHHHHHHHHhhhhhhccccccccccceEeecCCeEEEEEEEcCC
Confidence            3569999999999999875321   11233444 45555 6888888884 32221  2343 5789999999998 999


Q ss_pred             ceEEEEEecCC------c--hhHHHHHHHHHHhhhhhhhhcCCCCCCC
Q psy2725          79 GLKFVLNTDVQ------A--QDVRKFLASVYSKVYVEYVVKNPLINPR  118 (143)
Q Consensus        79 g~KFvl~td~~------~--~~i~~~l~~iy~~lYv~~v~kNPfy~~~  118 (143)
                      |+|||+++|.+      +  ++||++|+++| ++|++ +++||||.++
T Consensus        88 ~vKfVl~~d~~~~~~~~D~~~~Ik~~F~~vh-~~Yvk-~l~NPFy~~~  133 (162)
T 3pr6_A           88 GLKIVIGFEQKSLSGADDEFEAINQIFETVR-KIYIR-VKCNPLLVSG  133 (162)
T ss_dssp             CCEEEEEEEGGGCCCCHHHHHHHHHHHHHHH-HHHHH-HHTCTTGGGS
T ss_pred             ceEEEEEEccCCcccccchHHHHHHHHHHHH-HHHHH-HhcCCCCCCC
Confidence            99999999863      3  69999999999 99999 7889999998

>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}

Probab=97.07  E-value=0.04  Score=41.33  Aligned_cols=99  Identities=18%  Similarity=0.175  Sum_probs=65.8

Q ss_pred             CeEEEEEEEeCCCCeeE--EeeeccccCCCCCCchhHHHHHHHHHhHHHHHHhhCCCCCCCceeEeeccceEEEEEecCC
Q psy2725           1 MTVYNFYLFDSFGTLLY--YAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPT   78 (143)
Q Consensus         1 M~iy~~~I~~r~g~~iy--~~~~~~~~~~~~~~~~~~~ll~g~l~sL~~i~~kls~~~~~~~~~~~~t~~ykl~~~~T~T   78 (143)
                      |.||++.|+.+++...-  ...++-   ++-+.=.....--.+-+..+.+++++.|.    .-.+++.+.|.+|+|....
T Consensus         2 mk~~~~~v~~~~~~~~~~l~~~~dl---ssf~~f~r~sv~ef~~f~~r~il~r~~~~----~r~s~~~~~y~fH~y~~~~   74 (199)
T 3kyq_A            2 MKLYSLSVFYKGEPKAVLLKAAYDV---SSFSFFQRSSVQEFMTFTSQLIVERSAKG----SRASVKEQEYLCHVYVRSD   74 (199)
T ss_dssp             CCEEEEEEEEECSSCEEEEEEEECC---TTSCTTTHHHHHHHHHHHHHHHHHTSCTT----EEEEEECSSEEEEEEECTT
T ss_pred             ceEEEEEEEEcCCCCceEEeeeccc---ccccceehHhHHHHHHHHHHHHHhcCCCC----CeEEEEeCCEEEEEEEecC
Confidence            78999999988765322  222321   11111111122335667788888997652    3367889999999999999


Q ss_pred             ceEEEEEecCCch--hHHHHHHHHHHhhhhh
Q psy2725          79 GLKFVLNTDVQAQ--DVRKFLASVYSKVYVE  107 (143)
Q Consensus        79 g~KFvl~td~~~~--~i~~~l~~iy~~lYv~  107 (143)
                      |+-+++++|..-+  -.-.+|.+|. +-|..
T Consensus        75 gl~yl~itd~~yp~r~AF~fL~ei~-~eF~~  104 (199)
T 3kyq_A           75 SLAGVVIADSEYPSRVAFTLLEKVL-DEFSK  104 (199)
T ss_dssp             SEEEEEEEETTSCHHHHHHHHHHHH-HHHHH
T ss_pred             CEEEEEEECCCCCHHHHHHHHHHHH-HHHHH
Confidence            9999999998754  3456677777 54444

>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A

Probab=96.21  E-value=0.24  Score=36.63  Aligned_cols=125  Identities=12%  Similarity=0.085  Sum_probs=74.4

Q ss_pred             CeEEEEEEEeCCCCeeEEeeeccccCCCCCCchhHHHHHHHHHhHHHHHHhhCCCCCCCceeEeeccceEEEEEecCCce
Q psy2725           1 MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGL   80 (143)
Q Consensus         1 M~iy~~~I~~r~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~l~sL~~i~~kls~~~~~~~~~~~~t~~ykl~~~~T~Tg~   80 (143)
                      |.+|+++.-+..|.+|....-... .++    ++   +..+=--.+.+.+++.+..  ..-.++..+.|.+| |....|+
T Consensus         2 Mi~ya~IaR~~d~~iLa~~~d~~~-~~~----~~---~~~~~~~a~~il~ki~~~~--~~r~s~~~~~y~fh-y~~~~gl   70 (196)
T 2nut_C            2 MVLLTMIARVADGLPLAASMQEDE-QSG----RD---LQQYQSQAKQLFRKLNEQS--PTRCTLEAGAMTFH-YIIEQGV   70 (196)
T ss_dssp             CCCCEEEEETTTCCEEEEECCCC----------C---HHHHHHHHHHHHHHCCTTS--CSEEEEEETTEEEE-EEEETTE
T ss_pred             ceEEEEEEEcCCCcEEEEeecccc-ccc----cc---HHHHHHHHHHHHHhcCCCC--CCeEEEEeCCEEEE-EEeCCCe
Confidence            666666655566878876432211 001    11   1111222456677887622  24467888999999 7888999


Q ss_pred             EEEEEecCCch--hHHHHHHHHHHhhhhhhhhcCCCCCCCCCccchhHHHHHHHHHHhcc
Q psy2725          81 KFVLNTDVQAQ--DVRKFLASVYSKVYVEYVVKNPLINPREPIKSDLFQNALDALVKESS  138 (143)
Q Consensus        81 KFvl~td~~~~--~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~s~~F~~~v~~~~~~~~  138 (143)
                      =|++++|..-+  -.-.+|.+|. +-|.... .+-.-....|..-..|+..+.++++.++
T Consensus        71 ~~l~i~d~~yp~r~af~fL~~i~-~~F~~~~-~~~~~~~~~~~~~~~f~~~l~~~~~~y~  128 (196)
T 2nut_C           71 CYLVLCEAAFPKKLAFAYLEDLH-SEFDEQH-GKKVPTVSRPYSFIEFDTFIQKTKKLYI  128 (196)
T ss_dssp             EEEEEEETTSCHHHHHHHHHHHH-HHHHHHH-TTTTTTCCSTTTTGGGHHHHHHHHTTTS
T ss_pred             EEEEEEcCCcchHHHHHHHHHHH-HHHHHhc-cchhccccCCCchHHHHHHHHHHHHHhc
Confidence            99999998754  3456777777 5554421 1211112345555689999998877653

>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A

Probab=95.39  E-value=0.44  Score=33.59  Aligned_cols=98  Identities=21%  Similarity=0.176  Sum_probs=58.9

Q ss_pred             CeEEEEEEEeCCC-CeeE-EeeeccccCCCCCCchhHHHHHHHHHhHHHHHHhhCCCCCCCceeEeeccceEEEEEecCC
Q psy2725           1 MTVYNFYLFDSFG-TLLY-YAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPT   78 (143)
Q Consensus         1 M~iy~~~I~~r~g-~~iy-~~~~~~~~~~~~~~~~~~~ll~g~l~sL~~i~~kls~~~~~~~~~~~~t~~ykl~~~~T~T   78 (143)
                      |.||++.|+..++ .++. ....+-+   ..+.-+....--.+-+-.+.+++++.+.    .-.+++.++|.+|++....
T Consensus         5 Mkl~~~~v~r~~~~~~~~L~~~~d~s---~f~ffqr~sv~ef~~~~ar~i~~r~~~~----~R~sv~~~~y~fH~~~~~~   77 (144)
T 3bw6_A            5 MRIYYIGVFRSGGEKALELSEVKDLS---QFGFFERSSVGQFMTFFAETVASRTGAG----QRQSIEEGNYIGHVYARSE   77 (144)
T ss_dssp             CCEEEEEEEECCSSSCEEEEEEECCT---TSCTTTTTHHHHHHHHHHHHHHHHCCTT----EEEEEEETTEEEEEEECTT
T ss_pred             EEEEEEEEEecCCCCCeEeEeeeccc---ccChhhhhhHHHHHHHHHHHHHhhCCCC----ceEEEEeCCEEEEEEEecC
Confidence            7899998876543 2333 2222211   1111011011123445567788888652    3467899999999998899


Q ss_pred             ceEEEEEecCCch--hHHHHHHHHHHhhhh
Q psy2725          79 GLKFVLNTDVQAQ--DVRKFLASVYSKVYV  106 (143)
Q Consensus        79 g~KFvl~td~~~~--~i~~~l~~iy~~lYv  106 (143)
                      |+=+++++|..-+  -.=.+|++|. +-|.
T Consensus        78 gl~~l~i~D~~yp~rvAF~~L~~i~-~eF~  106 (144)
T 3bw6_A           78 GICGVLITDKEYPVRPAYTLLNKIL-DEYL  106 (144)
T ss_dssp             SEEEEEEEETTSCHHHHHHHHHHHH-HHHH
T ss_pred             CEEEEEEECCCCChhHHHHHHHHHH-HHHH
Confidence            9999999998643  3345556666 4343

>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=95.20  E-value=0.49  Score=33.80  Aligned_cols=91  Identities=15%  Similarity=0.176  Sum_probs=53.7

Q ss_pred             eEEEEEEEeCCCCeeEEeeeccccCCCCCCchhHHHHHHHHHhHHHHHHhhCCCC-CCCceeEeeccceEEEEEecCCce
Q psy2725           2 TVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLD-SKTGFLSYKTTKYALHLYETPTGL   80 (143)
Q Consensus         2 ~iy~~~I~~r~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~l~sL~~i~~kls~~~-~~~~~~~~~t~~ykl~~~~T~Tg~   80 (143)
                      ||-+++|+|++|.++..|.|...      ...+.+.+..-++.      ++...+ ....+  +..+.+++ .|..-.++
T Consensus         1 MI~~i~Il~~~Gk~~lsk~y~~~------~~~~~~~~~~~~~~------~i~~~~~~~~~~--i~~~~~~~-vy~~~~~L   65 (158)
T 1w63_Q            1 MMRFMLLFSRQGKLRLQKWYLAT------SDKERKKMVRELMQ------VVLARKPKMCSF--LEWRDLKV-VYKRYASL   65 (158)
T ss_dssp             CEEEEEEECSSSCEEEEEESSCC------CHHHHHHHHHHHHH------HHHTSCSSSCSE--EEETTEEE-EEEEETTE
T ss_pred             CeEEEEEECCCCCEEEEEeCCCC------CHHHHHHHHHHHHH------HHhccCCCCCCe--EEECCEEE-EEEEECCE
Confidence            47899999999999999999642      12223233322332      222211 11222  34455554 55667789


Q ss_pred             EEEEEecCCch--hHHHHHHHHHHhhhhhh
Q psy2725          81 KFVLNTDVQAQ--DVRKFLASVYSKVYVEY  108 (143)
Q Consensus        81 KFvl~td~~~~--~i~~~l~~iy~~lYv~~  108 (143)
                      -|+++++.+.+  .+-++++.+. ++.-+|
T Consensus        66 yfv~~~~~~~Nel~~le~L~~~v-evl~~y   94 (158)
T 1w63_Q           66 YFCCAIEGQDNELITLELIHRYV-ELLDKY   94 (158)
T ss_dssp             EEEEEECSSSCHHHHHHHHHHHH-HHHHHH
T ss_pred             EEEEEecCCCCHHHHHHHHHHHH-HHHHHH
Confidence            99999987654  3455566655 655554

>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S

Probab=92.28  E-value=2  Score=29.84  Aligned_cols=91  Identities=15%  Similarity=0.284  Sum_probs=54.8

Q ss_pred             eEEEEEEEeCCCCeeEEeeeccccCCCCCCchhHHHHHHHHHhHHHHHHhhCCCC-CCCceeEeeccceEEEEEecCCce
Q psy2725           2 TVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLD-SKTGFLSYKTTKYALHLYETPTGL   80 (143)
Q Consensus         2 ~iy~~~I~~r~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~l~sL~~i~~kls~~~-~~~~~~~~~t~~ykl~~~~T~Tg~   80 (143)
                      ||-+++|+|++|.++..|.|...      ..++.+.+..-++.      ++...+ ....+  +..+++++ .|..-.++
T Consensus         1 MI~~i~i~~~~Gk~~l~k~y~~~------~~~~~~~~~~~f~~------~v~~~~~~~~~~--~~~~~~~~-vy~~~~~L   65 (142)
T 2vgl_S            1 MIRFILIQNRAGKTRLAKWYMQF------DDDEKQKLIEEVHA------VVTVRDAKHTNF--VEFRNFKI-IYRRYAGL   65 (142)
T ss_dssp             CEEEEEEEETTSCEEEEEECSCC------CHHHHHHHHHHHHH------HHHTCCTTSCSE--EEETTEEE-EEEEETTE
T ss_pred             CeEEEEEEcCCCCEEEEEeCCCC------ChhhhHHHHHHHHH------HHhcCCCCCCCE--EEECCEEE-EEEEECCE
Confidence            47899999999999999999641      12233333333332      222111 11222  33445544 55666789


Q ss_pred             EEEEEecCCchh--HHHHHHHHHHhhhhhh
Q psy2725          81 KFVLNTDVQAQD--VRKFLASVYSKVYVEY  108 (143)
Q Consensus        81 KFvl~td~~~~~--i~~~l~~iy~~lYv~~  108 (143)
                      -|+++++.+.+.  +-++++.+. ++.-+|
T Consensus        66 yfv~~~~~~~N~l~~le~L~~~v-e~l~~y   94 (142)
T 2vgl_S           66 YFCICVDVNDNNLAYLEAIHNFV-EVLNEY   94 (142)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHH-HHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH-HHHHHH
Confidence            999999886543  456666666 666665

>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A

Probab=91.97  E-value=2.7  Score=30.74  Aligned_cols=84  Identities=23%  Similarity=0.282  Sum_probs=51.8

Q ss_pred             HHHhhCCCCCCCceeEeeccceEEEEEecCCceEEEEEecCCch--hHHHHHHHHHHhhhhhhhhcCCCCCCCCC-ccch
Q psy2725          48 FVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQ--DVRKFLASVYSKVYVEYVVKNPLINPREP-IKSD  124 (143)
Q Consensus        48 i~~kls~~~~~~~~~~~~t~~ykl~~~~T~Tg~KFvl~td~~~~--~i~~~l~~iy~~lYv~~v~kNPfy~~~~p-I~s~  124 (143)
                      +.+++.+.   +.-.++..+.|.+| |....|+-|++++|..-+  -.-.+|.+|. +-|....- +.-. ...| -.+.
T Consensus        33 iL~kip~~---~~k~s~~~~~y~fH-yl~~~gl~yl~i~d~~yp~r~af~fL~~i~-~eF~~~~~-~~~~-~~~~~~~~~  105 (189)
T 4b93_A           33 ILAKIPSE---NNKLTYSHGNYLFH-YICQDRIVYLCITDDDFERSRAFSFLNEVK-KRFQTTYG-SRAQ-TALPYAMNS  105 (189)
T ss_dssp             HHTTCCSS---SEEEEEEETTEEEE-EEEETTEEEEEEEETTSCHHHHHHHHHHHH-HHHHHHHG-GGGG-TCCTTTTHH
T ss_pred             HHHhCCCC---CCeEEEEECCEEEE-EEEeCCeEEEEEEcCccCHHHHHHHHHHHH-HHHHhhcc-cccc-ccCCccccc
Confidence            44566442   34568899999999 777899999999998643  3445666666 43433111 1111 1122 2345


Q ss_pred             hHHHHHHHHHHhcc
Q psy2725         125 LFQNALDALVKESS  138 (143)
Q Consensus       125 ~F~~~v~~~~~~~~  138 (143)
                      .|+..+++.++.++
T Consensus       106 ~f~~~l~~~~~~y~  119 (189)
T 4b93_A          106 EFSSVLAAQLKHHS  119 (189)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHhhh
Confidence            68888888877653

>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M

Probab=89.16  E-value=4.7  Score=33.06  Aligned_cols=90  Identities=10%  Similarity=0.156  Sum_probs=53.4

Q ss_pred             eEEEEEEEeCCCCeeEEeeeccccCCCCCCchhHHHHHHHHHhHHHHHHhhCCCCCCCceeEeeccceEEEEEecCCceE
Q psy2725           2 TVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLK   81 (143)
Q Consensus         2 ~iy~~~I~~r~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~l~sL~~i~~kls~~~~~~~~~~~~t~~ykl~~~~T~Tg~K   81 (143)
                      ||.+++|+|++|.++..+.|....      . .. .       ++.+...+........=..+.++.++ ..|..-.++-
T Consensus         1 MI~~i~I~~~~Gk~~l~k~y~~~~------~-~~-~-------~~~f~~~v~~~~~~~~~~ii~~~~~~-~vy~~~~~Ly   64 (435)
T 2vgl_M            1 MIGGLFIYNHKGEVLISRVYRDDI------G-RN-A-------VDAFRVNVIHARQQVRSPVTNIARTS-FFHVKRSNIW   64 (435)
T ss_dssp             CCCEEEEECTTCCEEEEEECSSSC------C-HH-H-------HHHHHHHTTTCSSCCCCSEEEETTEE-EEEEEETTEE
T ss_pred             CeEEEEEECCCCCEEEEEecCCCC------C-hh-H-------HHHHHHHHhccccCCCCCEEEECCEE-EEEEEECCEE
Confidence            467899999999999999997421      1 11 1       13333444332111111234455554 4556777899


Q ss_pred             EEEEecCCchh--HHHHHHHHHHhhhhhh
Q psy2725          82 FVLNTDVQAQD--VRKFLASVYSKVYVEY  108 (143)
Q Consensus        82 Fvl~td~~~~~--i~~~l~~iy~~lYv~~  108 (143)
                      |+++++.+++.  +-++++.+. ++.-+|
T Consensus        65 fv~~~~~~~n~l~~le~L~~~v-~vl~~y   92 (435)
T 2vgl_M           65 LAAVTKQNVNAAMVFEFLYKMC-DVMAAY   92 (435)
T ss_dssp             EEEEESSCCCHHHHHHHHHHHH-HHHHHH
T ss_pred             EEEEecCCCCHHHHHHHHHHHH-HHHHHH
Confidence            99999876543  345556655 555554

>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=88.67  E-value=0.74  Score=37.79  Aligned_cols=92  Identities=20%  Similarity=0.197  Sum_probs=51.7

Q ss_pred             CeEEEEEEEeCCCCeeEEeeeccccCCCCCCchhHHHHHHHHHhHHHHHHhhCCCCCCCceeEeeccceEEEEEecCCce
Q psy2725           1 MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGL   80 (143)
Q Consensus         1 M~iy~~~I~~r~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~l~sL~~i~~kls~~~~~~~~~~~~t~~ykl~~~~T~Tg~   80 (143)
                      |||-+++|+|++|.++..+.|.....     .+......-.+.      .+-.... ...  .+.++.++ ..|..-.++
T Consensus         1 mMI~~i~I~~~~Gk~~l~k~y~~~~~-----~~~~~~f~~~v~------~~~~~~~-~~~--~i~~~~~~-~vy~~~~~L   65 (423)
T 1w63_M            1 MSASAVYVLDLKGKVLICRNYRGDVD-----MSEVEHFMPILM------EKEEEGM-LSP--ILAHGGVR-FMWIKHNNL   65 (423)
T ss_dssp             -CCCEEEEEETTTEECSCBCCSCSCT-----TTTHHHHHHHHH------HHHHTSC-CCS--EEEETTEE-EEEEEETTE
T ss_pred             CceEEEEEECCCCCEEEEEecCCCCC-----hHHHHHHHHHHh------hccccCC-CCC--EEEECCEE-EEEEEECCE
Confidence            89999999999999999999974211     111111111111      1101001 112  23344554 445666789


Q ss_pred             EEEEEecCCch--hHHHHHHHHHHhhhhhh
Q psy2725          81 KFVLNTDVQAQ--DVRKFLASVYSKVYVEY  108 (143)
Q Consensus        81 KFvl~td~~~~--~i~~~l~~iy~~lYv~~  108 (143)
                      -|+++++.+++  .+-++++.+. ++.-+|
T Consensus        66 yfv~~~~~~~n~l~~le~L~~~v-~~l~~y   94 (423)
T 1w63_M           66 YLVATSKKNACVSLVFSFLYKVV-QVFSEY   94 (423)
T ss_dssp             EEEEEESSCCCTHHHHHHHHHHH-HHHHHH
T ss_pred             EEEEEecCCCCHHHHHHHHHHHH-HHHHHH
Confidence            99999987653  3455666666 665554

>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A

Probab=86.28  E-value=5.7  Score=28.70  Aligned_cols=58  Identities=21%  Similarity=0.296  Sum_probs=40.6

Q ss_pred             HHHHHHhhCCCCCCCceeEeeccceEEEEEecCCceEEEEEecCCch--hHHHHHHHHHHhhhhh
Q psy2725          45 LKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQ--DVRKFLASVYSKVYVE  107 (143)
Q Consensus        45 L~~i~~kls~~~~~~~~~~~~t~~ykl~~~~T~Tg~KFvl~td~~~~--~i~~~l~~iy~~lYv~  107 (143)
                      .+.+.+++.+.   .+-.+++.++|.+|++. -.|+-|++++|..-+  -.-.+|++|. +-|.+
T Consensus        72 ak~ll~kl~~~---~~r~s~~~~~y~fHyl~-~ngl~yl~I~D~~yp~r~AF~fLedI~-~eF~~  131 (169)
T 2vx8_A           72 TEQILAKIPSE---NNKLTYSHGNYLFHYIC-QDRIVYLCITDDDFERSRAFSFLNEVK-KRFQT  131 (169)
T ss_dssp             HHHHHTTSCSS---CEEEEEEETTEEEEEEE-ETTEEEEEEEETTSCHHHHHHHHHHHH-HHHHH
T ss_pred             HHHHHhhCCCC---CCceEEEECCEEEEEEE-ECCEEEEEEEccccchHHHHHHHHHHH-HHHHH
Confidence            45566777762   24467888999999998 469999999998642  3455666666 44443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	143
d2j3wa1	140	d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musc	2e-21

>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]} Length = 140

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Sedlin (SEDL)
domain: Sedlin (SEDL)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 81.9 bits (202), Expect = 2e-21
 Identities = 22/134 (16%), Positives = 54/134 (40%), Gaps = 3/134 (2%)

Query: 4   YNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGF-L 62
           + F +       ++  E+     +   +++   L   +  +    V +   L +      
Sbjct: 5   FYFVIVGHHDNPVFEMEFLPPGKAE-SKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKT 63

Query: 63  SYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREPIK 122
             K  ++ +  + T   ++F++  DV+ +D  K   +    +Y+++ + NP   P  PI+
Sbjct: 64  VDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPIR 122

Query: 123 SDLFQNALDALVKE 136
           S  F   +  L K+
Sbjct: 123 SSAFDRKVQFLGKK 136

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	143
d2j3wa1	140	Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]	100.0
d1ioua_	140	Synaptobrevin homolog 1 ykt6 {Baker's yeast (Sacch	96.42
d2vglm2	141	Mu2 adaptin (clathrin coat assembly protein AP50)	95.97
d2vgls_	142	Sigma2 adaptin (clathrin coat assembly protein AP1	95.94
d1ifqa_	127	Sec22b {Mouse (Mus musculus) [TaxId: 10090]}	88.56

>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Sedlin (SEDL)
domain: Sedlin (SEDL)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.2e-39  Score=232.26  Aligned_cols=133  Identities=17%  Similarity=0.371  Sum_probs=114.7

Q ss_pred             eEEEEEEEeCCCCeeEEeeeccccCCCCCCchhHHHHHHHHHhHHHHHHhhCCCCCCCceeE-eeccceEEEEEecCCce
Q psy2725           2 TVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFLS-YKTTKYALHLYETPTGL   80 (143)
Q Consensus         2 ~iy~~~I~~r~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~l~sL~~i~~kls~~~~~~~~~~-~~t~~ykl~~~~T~Tg~   80 (143)
                      ..|+|+||||+|+|||+++|.....+. ..+++..+..+++||..+++++++|.++..++.. .++++|++|||+|+||+
T Consensus         3 ~~y~f~IIg~~~~pLY~~ef~~~~~~~-~~~~~~~~~~fi~hssLDive~~~~~~~~~~l~~l~~~~~~~v~~y~T~tg~   81 (140)
T d2j3wa1           3 GSFYFVIVGHHDNPVFEMEFLPPGKAE-SKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHM   81 (140)
T ss_dssp             CCEEEEEECTTSCEEEEEEECCSCCGG-GHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTTCC
T ss_pred             cEEEEEEEcCCCCeeEEEecCCccccc-ccchHHHHHHHHHHHHHHHHHHhcccCCCccceeEEecCCEEEEEEEcCCCc
Confidence            379999999999999999997642211 1133455677899999999999999877677766 58999999999999999


Q ss_pred             EEEEEecCCc-hhHHHHHHHHHHhhhhhhhhcCCCCCCCCCccchhHHHHHHHHHHhc
Q psy2725          81 KFVLNTDVQA-QDVRKFLASVYSKVYVEYVVKNPLINPREPIKSDLFQNALDALVKES  137 (143)
Q Consensus        81 KFvl~td~~~-~~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~s~~F~~~v~~~~~~~  137 (143)
                      ||||+||++. +.++.+|+++| ++|+++|+ ||||++++||+|+.||++|+++++++
T Consensus        82 Kfvl~td~~~~~~i~~~~~~v~-~lYv~~v~-NPfy~~~~pI~s~~Fd~~v~~~~~~~  137 (140)
T d2j3wa1          82 RFIMLHDVRQEDGIKNFFTDVY-DLYIKFAM-NPFYEPNSPIRSSAFDRKVQFLGKKH  137 (140)
T ss_dssp             EEEEEESSCCHHHHHHHHHHHH-HHHHHHHH-STTCCTTCCCCCHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCcchHHHHHHHHHH-HHHHHHhh-CccCCCCCcccCHHHHHHHHHHHHHH
Confidence            9999999975 56899999999 99999877 99999999999999999999999975

>d1ioua_ d.110.4.1 (A:) Synaptobrevin homolog 1 ykt6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Synaptobrevin homolog 1 ykt6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.42  E-value=0.066  Score=36.18  Aligned_cols=124  Identities=20%  Similarity=0.192  Sum_probs=73.5

Q ss_pred             CeEEEEEEEeCCC-CeeEEeeeccccCCCCCCchhHHHHHHHHHhHHHHHHhhCCCCCCCceeEeeccceEEEEEecCCc
Q psy2725           1 MTVYNFYLFDSFG-TLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTG   79 (143)
Q Consensus         1 M~iy~~~I~~r~g-~~iy~~~~~~~~~~~~~~~~~~~ll~g~l~sL~~i~~kls~~~~~~~~~~~~t~~ykl~~~~T~Tg   79 (143)
                      |.||++.|+...+ .++....-..  -+.-+.=.....--.+.+..+.++++..+.    ...+++.++|.+|+|....|
T Consensus         1 Mkl~~~~v~~~~~~~~~~L~~a~D--lssf~ffqR~svkE~~~f~sr~i~~Rt~~g----~r~sv~~~~y~~h~yv~~~g   74 (140)
T d1ioua_           1 MRIYYIGVFRSGGEKALELSEVKD--LSQFGFFERSSVGQFMTFFAETVASRTGAG----ERQSIEEGNYIGHVYARSEG   74 (140)
T ss_dssp             CCCCEEEEEEEETTEEEEEEEEEC--CSSCCTTHHHHHHHHHHHHHHHHHHHCCSS----SEEEEEETTEEEEEECCSSS
T ss_pred             CeEEEEEEEEcCCCCcEEEeeecc--ccccceeehHhHHHHHHHHHHHHhhcCCCC----ceEEEEcCCeEEEEEEeeCC
Confidence            8899999997543 3554322211  111111111112235667888999998764    25788999999999999999


Q ss_pred             eEEEEEecCCch--hHHHHHHHHHHhhhhhhh----hcCCCCCCCCCccchhHHHHHHH
Q psy2725          80 LKFVLNTDVQAQ--DVRKFLASVYSKVYVEYV----VKNPLINPREPIKSDLFQNALDA  132 (143)
Q Consensus        80 ~KFvl~td~~~~--~i~~~l~~iy~~lYv~~v----~kNPfy~~~~pI~s~~F~~~v~~  132 (143)
                      +=+++++|..-+  -.=.+|++|. +-|..-.    ..| .-..+.|+..+.|++.+++
T Consensus        75 l~~l~i~d~~Yp~r~AF~~L~~i~-~eF~~~~~~~~~~~-i~~~~~~~~~~~l~~~l~k  131 (140)
T d1ioua_          75 ICGVLITDKQYPVRPAYTLLNKIL-DEYLVAHPKEEWAD-VTETNDALKMKQLDTYISK  131 (140)
T ss_dssp             CEEEEEBCTTSCHHHHHHHHHHHH-HHHHHSSCHHHHTT-CSCCCTTTSCHHHHHHHHH
T ss_pred             EEEEEEECCCcchHHHHHHHHHHH-HHHHHHcChHhhhh-hhccccccchHHHHHHHHH
Confidence            999999998643  3345566666 4443311    111 1122345555566555544

>d1ifqa_ d.110.4.1 (A:) Sec22b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Sec22b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.56  E-value=2.1  Score=27.85  Aligned_cols=85  Identities=12%  Similarity=0.138  Sum_probs=50.9

Q ss_pred             HHHHHhhCCCCCCCceeEeeccceEEEEEecCCceEEEEEecCCch--hHHHHHHHHHHhhhhhhhhcCCCCCCCCCccc
Q psy2725          46 KSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQ--DVRKFLASVYSKVYVEYVVKNPLINPREPIKS  123 (143)
Q Consensus        46 ~~i~~kls~~~~~~~~~~~~t~~ykl~~~~T~Tg~KFvl~td~~~~--~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~s  123 (143)
                      +.+.++++|..+  .-.++..++|.+| |..-.|+-|++++|..-+  -.=.+|.+|-.+.-.+|  .+=......|..=
T Consensus        38 k~ll~kl~~~~~--~r~s~~~~~y~fH-y~~~~gi~yl~i~d~~~~~~laF~fLeei~~eF~~~y--~~~i~~~~rpy~F  112 (127)
T d1ifqa_          38 KQLFRKLNEQSP--TRCTLEAGAMTFH-YIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQH--GKKVPTVSRPYSF  112 (127)
T ss_dssp             HHHHTTCCTTSC--SEEEEEETTEEEE-EEEETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHH--TTTTTTCCSTTTT
T ss_pred             HHHHHhCCCCCC--CcEEEEECCEEEE-EEecCCeEEEEEEccccCchhHHHHHHHHHHHHHHhh--hhhhhcccCCcch
Confidence            445578876532  4467899999999 566799999999998642  23455555552222222  1112222344443


Q ss_pred             hhHHHHHHHHHH
Q psy2725         124 DLFQNALDALVK  135 (143)
Q Consensus       124 ~~F~~~v~~~~~  135 (143)
                      ..||+-+.+.-+
T Consensus       113 i~Fd~~iqk~k~  124 (127)
T d1ifqa_         113 IEFDTFIQKTKK  124 (127)
T ss_dssp             GGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            467777766544