Psyllid ID: psy2780

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPAPQVSTSVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYAKRAFIHWYVGEGMEEGEFSEAREDLGALEKDYEEMGEEAGEGGEDAEEGED
cccEEEEEEcccccccccccHHHHHHcccccccccccccccccccccccccEEEccccccccccEEEEccccccccEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccEEEEEcccccccccHHHHHHHHHHcccccccccEEEEEEccccccccccccccccccccccccccEEEEEcHHHHHHHHHHccccccccccccHHHHHHHHccccccccccccccccHHHHHcccccccccccccccccccccccccccccccHHHHHHHHccccccEEccccccccccEEEEEcccccccHHHHHHHHHHHHccccccccccccccEEEEEcccccccccccccccccEEEEcccHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccc
ccEEEEEEEccccHHHcHHHHHHHHHHcccccccccccccccccccccEEEEEEcccccccccEEEEEEcccccHHEEccccccccccccHcEcccccccccHccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccccHHHHHHHHHHHHHcccccEEEEEEEcccccccEEEccccHEEEHHHHEccccEEEEEccHHHHHHHHHcccccccccccHHHHHHHHHHHHHEEEcccccccccHHHHHHcccccccEcccccccccEcccccHHHHHccHHHHHHHHccHHHcccccccccccEEEEEEEEccccccHHHHHHHHHHHcccccEEEEEcccccEEEEEcccccccccccHHHcHHEEHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHccc
MRECISIHVGQAGVQIGNACWELyclehgiqpdgqmpsdkmigggddsfstffsetgagkhvpravfvdleptvvdevrtgtyrqlfhpeqlisgkedaannyarghytIGKEIIDLVLDRVRKLADQctglqgflifhsfgggtgsgfTSLLMERISVdygkksklqyaiypapqvstsvvepynsvltthttlehsdcafmadneaIYDICRRnldierptytnLNRLISQIVSSITAslrfdgalnvdltefqtnlvpfprvhfplvtyapiVSAEKAYHEQLSVAEItnacfepanqmvkcdprhgkymaccmlyrgdvvpkdvNSAIATIktkrtiqfvdwcptgfkvginyqpptvvpggdlakVQRAVCMLSNTTAIAEAWGRLDHKFDLMYAKRAFIHWYvgegmeegefsEAREDLGALEKDYEEMGeeageggedaeeged
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTyrqlfhpeqlisgkedaANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPAPQVSTSVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNSAIAtiktkrtiqfvdWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYAKRAFIHWYVGEGMEEGEFSEAREDLGALEKDYEEmgeeageggedaeeged
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLIFHsfgggtgsgftsLLMERISVDYGKKSKLQYAIYPAPQVSTSVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYAKRAFIHWYVGEGMEEGEFSEAREDLGALEKDYeemgeeageggedaeeged
***CISIHVGQAGVQIGNACWELYCLEHGI****************************GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPAPQVSTSVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYAKRAFIHWYVGEG***************************************
*RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSD****GGDDSFSTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPAPQVSTSVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYAKRAFIHWYVGEGMEEGEFSEAREDLGALEKDYEEMGEE*************
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPAPQVSTSVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYAKRAFIHWYVGEGMEEGEFSEAREDLGALEKDY*******************
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPAPQVSTSVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYAKRAFIHWYVGEGMEEGEFSEAREDLGALEKDYEEMGEEA************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPAPQVSTSVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYAKRAFIHWYVGEGMEEGExxxxxxxxxxxxxxxxxxxxxAGEGGEDAEEGED
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query451 2.2.26 [Sep-21-2011]
Q3ZCJ7449 Tubulin alpha-1C chain OS yes N/A 0.993 0.997 0.924 0.0
P68373449 Tubulin alpha-1C chain OS yes N/A 0.993 0.997 0.924 0.0
P68365449 Tubulin alpha-1C chain OS yes N/A 0.993 0.997 0.924 0.0
Q6AYZ1449 Tubulin alpha-1C chain OS yes N/A 0.993 0.997 0.921 0.0
Q9BQE3449 Tubulin alpha-1C chain OS yes N/A 0.993 0.997 0.919 0.0
P08537449 Tubulin alpha chain OS=Xe N/A N/A 0.993 0.997 0.917 0.0
P18288450 Tubulin alpha chain, test N/A N/A 0.966 0.968 0.947 0.0
P06603450 Tubulin alpha-1 chain OS= yes N/A 0.973 0.975 0.943 0.0
Q68FR8450 Tubulin alpha-3 chain OS= yes N/A 0.966 0.968 0.944 0.0
P05214450 Tubulin alpha-3 chain OS= yes N/A 0.966 0.968 0.944 0.0
>sp|Q3ZCJ7|TBA1C_BOVIN Tubulin alpha-1C chain OS=Bos taurus GN=TUBA1C PE=1 SV=1 Back     alignment and function desciption
 Score =  867 bits (2241), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/448 (92%), Positives = 439/448 (97%)

Query: 1   MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGK 60
           MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDK IGGGDDSF+TFFSETGAGK
Sbjct: 1   MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 61  HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLD 120
           HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 61  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 121 RVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPAPQVSTS 180
           RVRKLADQCTGLQGFL+FHSFGGGTGSGFTSLLMER+SVDYGKKSKL+++IYPAPQVST+
Sbjct: 121 RVRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 181 VVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
           VVEPYNS+LTTHTTLEHSDCAFM DNEAIYDICRRNLDIERPTYTNLNRL+SQIVSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLMSQIVSSITA 240

Query: 241 SLRFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACFEPAN 300
           SLRFDGALNVDLTEFQTNLVP+PR+HFPL TYAP++SAEKAYHEQLSVAEITNACFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300

Query: 301 QMVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360
           QMVKCDPRHGKYMACC+LYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINYQPP
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360

Query: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYAKRAFIHWYVGEGMEEGEFSE 420
           TVVPGGDLAKVQRAVCMLSNTTA+AEAW RLDHKFDLMYAKRAF+HWYVGEGMEEGEFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420

Query: 421 AREDLGALEKDYEEMGEEAGEGGEDAEE 448
           ARED+ ALEKDYEE+G ++ EG ++ +E
Sbjct: 421 AREDMAALEKDYEEVGADSAEGDDEGDE 448
Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.
Bos taurus (taxid: 9913)
>sp|P68373|TBA1C_MOUSE Tubulin alpha-1C chain OS=Mus musculus GN=Tuba1c PE=1 SV=1 Back     alignment and function description
>sp|P68365|TBA1C_CRIGR Tubulin alpha-1C chain OS=Cricetulus griseus GN=TUBA1C PE=2 SV=1 Back     alignment and function description
>sp|Q6AYZ1|TBA1C_RAT Tubulin alpha-1C chain OS=Rattus norvegicus GN=Tuba1c PE=1 SV=1 Back     alignment and function description
>sp|Q9BQE3|TBA1C_HUMAN Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C PE=1 SV=1 Back     alignment and function description
>sp|P08537|TBA_XENLA Tubulin alpha chain OS=Xenopus laevis GN=tuba PE=2 SV=2 Back     alignment and function description
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific OS=Oncorhynchus mykiss PE=2 SV=1 Back     alignment and function description
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain OS=Drosophila melanogaster GN=alphaTub84B PE=2 SV=1 Back     alignment and function description
>sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain OS=Rattus norvegicus GN=Tuba3a PE=2 SV=1 Back     alignment and function description
>sp|P05214|TBA3_MOUSE Tubulin alpha-3 chain OS=Mus musculus GN=Tuba3a PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query451
195157178 1216 GL12416 [Drosophila persimilis] gi|19411 0.971 0.360 0.942 0.0
332027696 595 Tubulin alpha-1 chain [Acromyrmex echina 0.993 0.752 0.928 0.0
77735360449 tubulin alpha-1C chain [Bos taurus] gi|1 0.993 0.997 0.924 0.0
6678469449 tubulin alpha-1C chain [Mus musculus] gi 0.993 0.997 0.924 0.0
2599500449 alpha-tubulin [Danio rerio] 0.993 0.997 0.926 0.0
58865558449 tubulin alpha-1C chain [Rattus norvegicu 0.993 0.997 0.921 0.0
344295288 758 PREDICTED: tubulin alpha-3 chain-like [L 0.966 0.575 0.942 0.0
74198443449 unnamed protein product [Mus musculus] 0.993 0.997 0.921 0.0
432094860 791 Tubulin alpha-3 chain [Myotis davidii] 0.964 0.549 0.944 0.0
327276966449 PREDICTED: tubulin alpha-1C chain-like [ 0.993 0.997 0.921 0.0
>gi|195157178|ref|XP_002019473.1| GL12416 [Drosophila persimilis] gi|194116064|gb|EDW38107.1| GL12416 [Drosophila persimilis] Back     alignment and taxonomy information
 Score =  871 bits (2250), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/438 (94%), Positives = 432/438 (98%)

Query: 2    RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGKH 61
            RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDK +GGGDDSF+TFFSETGAGKH
Sbjct: 768  RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGKH 827

Query: 62   VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDR 121
            VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLI+GKEDAANNYARGHYTIGKEI+DLVLDR
Sbjct: 828  VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 887

Query: 122  VRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPAPQVSTSV 181
            +RKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMER+SVDYGKKSKL++AIYPAPQVST+V
Sbjct: 888  IRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAV 947

Query: 182  VEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITAS 241
            VEPYNS+LTTHTTLEHSDCAFM DNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITAS
Sbjct: 948  VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS 1007

Query: 242  LRFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACFEPANQ 301
            LRFDGALNVDLTEFQTNLVP+PR+HFPLVTYAP++SAEKAYHEQLSVAEITNACFEPANQ
Sbjct: 1008 LRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQ 1067

Query: 302  MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361
            MVKCDPRHGKYMACCMLYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 1068 MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 1127

Query: 362  VVPGGDLAKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYAKRAFIHWYVGEGMEEGEFSEA 421
            VVPGGDLAKVQRAVCMLSNTTAIAEAW RLDHKFDLMYAKRAF+HWYVGEGMEEGEFSEA
Sbjct: 1128 VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA 1187

Query: 422  REDLGALEKDYEEMGEEA 439
            REDL ALEKDYEE+G ++
Sbjct: 1188 REDLAALEKDYEEVGMDS 1205

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|332027696|gb|EGI67764.1| Tubulin alpha-1 chain [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|77735360|ref|NP_001029376.1| tubulin alpha-1C chain [Bos taurus] gi|122140942|sp|Q3ZCJ7.1|TBA1C_BOVIN RecName: Full=Tubulin alpha-1C chain gi|73586894|gb|AAI02117.1| Tubulin, alpha 4a [Bos taurus] gi|296487788|tpg|DAA29901.1| TPA: tubulin alpha 6 [Bos taurus] Back     alignment and taxonomy information
>gi|6678469|ref|NP_033474.1| tubulin alpha-1C chain [Mus musculus] gi|148225011|ref|NP_001091315.1| uncharacterized protein LOC100037141 [Xenopus laevis] gi|345842428|ref|NP_001230906.1| tubulin alpha-1C chain [Cricetulus griseus] gi|55977475|sp|P68365.1|TBA1C_CRIGR RecName: Full=Tubulin alpha-1C chain; AltName: Full=Alpha-tubulin 3; AltName: Full=Alpha-tubulin III; AltName: Full=Tubulin alpha-3 chain gi|55977482|sp|P68373.1|TBA1C_MOUSE RecName: Full=Tubulin alpha-1C chain; AltName: Full=Alpha-tubulin 6; AltName: Full=Alpha-tubulin isotype M-alpha-6; AltName: Full=Tubulin alpha-6 chain gi|202217|gb|AAA40503.1| alpha-tubulin isotype M-alpha-6 [Mus musculus] gi|304532|gb|AAA37026.1| alpha-tubulin III [Cricetulus griseus] gi|13435777|gb|AAH04745.1| Tubulin, alpha 1C [Mus musculus] gi|18381107|gb|AAH22182.1| Tuba1c protein [Mus musculus] gi|20071240|gb|AAH26753.1| Tubulin, alpha 1C [Mus musculus] gi|62825944|gb|AAH94022.1| Tubulin, alpha 1C [Mus musculus] gi|74211573|dbj|BAE26516.1| unnamed protein product [Mus musculus] gi|124481732|gb|AAI33206.1| LOC100037141 protein [Xenopus laevis] Back     alignment and taxonomy information
>gi|2599500|gb|AAB84143.1| alpha-tubulin [Danio rerio] Back     alignment and taxonomy information
>gi|58865558|ref|NP_001011995.1| tubulin alpha-1C chain [Rattus norvegicus] gi|392345915|ref|XP_003749402.1| PREDICTED: tubulin alpha-1C chain-like isoform 1 [Rattus norvegicus] gi|392345917|ref|XP_003749403.1| PREDICTED: tubulin alpha-1C chain-like isoform 2 [Rattus norvegicus] gi|55976169|sp|Q6AYZ1.1|TBA1C_RAT RecName: Full=Tubulin alpha-1C chain; AltName: Full=Alpha-tubulin 6; AltName: Full=Tubulin alpha-6 chain gi|50927313|gb|AAH78829.1| Tubulin, alpha 1C [Rattus norvegicus] gi|149032098|gb|EDL87010.1| rCG50796 [Rattus norvegicus] Back     alignment and taxonomy information
>gi|344295288|ref|XP_003419344.1| PREDICTED: tubulin alpha-3 chain-like [Loxodonta africana] Back     alignment and taxonomy information
>gi|74198443|dbj|BAE39705.1| unnamed protein product [Mus musculus] Back     alignment and taxonomy information
>gi|432094860|gb|ELK26268.1| Tubulin alpha-3 chain [Myotis davidii] Back     alignment and taxonomy information
>gi|327276966|ref|XP_003223237.1| PREDICTED: tubulin alpha-1C chain-like [Anolis carolinensis] gi|359323129|ref|XP_003640008.1| PREDICTED: tubulin alpha-1C chain-like [Canis lupus familiaris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query451
FB|FBgn0003884450 alphaTub84B "alpha-Tubulin at 0.957 0.96 0.923 2.2e-224
UNIPROTKB|F1N9J7450 LOC100859737 "Uncharacterized 0.957 0.96 0.923 9.5e-224
UNIPROTKB|Q3ZCJ7449 TUBA1C "Tubulin alpha-1C chain 0.957 0.962 0.916 1.5e-223
UNIPROTKB|F2Z4K0450 TUBA3E "Uncharacterized protei 0.957 0.96 0.921 2.5e-223
UNIPROTKB|J9NXT1450 LOC608051 "Uncharacterized pro 0.957 0.96 0.921 2.5e-223
UNIPROTKB|Q13748450 TUBA3C "Tubulin alpha-3C/D cha 0.957 0.96 0.921 2.5e-223
UNIPROTKB|F1RK98450 LOC100510930 "Uncharacterized 0.957 0.96 0.921 2.5e-223
RGD|1565155450 Tuba3b "tubulin, alpha 3B" [Ra 0.957 0.96 0.921 2.5e-223
RGD|1565719450 Tuba3a "tubulin, alpha 3A" [Ra 0.957 0.96 0.921 2.5e-223
FB|FBgn0003885450 alphaTub84D "alpha-Tubulin at 0.957 0.96 0.918 3.2e-223
FB|FBgn0003884 alphaTub84B "alpha-Tubulin at 84B" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 2166 (767.5 bits), Expect = 2.2e-224, P = 2.2e-224
 Identities = 399/432 (92%), Positives = 415/432 (96%)

Query:     1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGK 60
             MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDK +GGGDDSF+TFFSETGAGK
Sbjct:     1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGK 60

Query:    61 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLD 120
             HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLI+GKEDAANNYARGHYTIGKEI+DLVLD
Sbjct:    61 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 120

Query:   121 RVRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERISVDYGKKSKLQYAIYPAPQVSTS 180
             R+RKLADQCTGLQGFLIFH            LLMER+SVDYGKKSKL++AIYPAPQVST+
Sbjct:   121 RIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTA 180

Query:   181 VVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
             VVEPYNS+LTTHTTLEHSDCAFM DNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct:   181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query:   241 SLRFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACFEPAN 300
             SLRFDGALNVDLTEFQTNLVP+PR+HFPLVTYAP++SAEKAYHEQLSVAEITNACFEPAN
Sbjct:   241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPAN 300

Query:   301 QMVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360
             QMVKCDPRHGKYMACCMLYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINYQPP
Sbjct:   301 QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360

Query:   361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYAKRAFIHWYVGEGMEEGEFSE 420
             TVVPGGDLAKVQRAVCMLSNTTAIAEAW RLDHKFDLMYAKRAF+HWYVGEGMEEGEFSE
Sbjct:   361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420

Query:   421 AREDLGALEKDY 432
             AREDL ALEKDY
Sbjct:   421 AREDLAALEKDY 432
GO:0045298 "tubulin complex" evidence=NAS
GO:0005525 "GTP binding" evidence=IEA;NAS
GO:0005874 "microtubule" evidence=ISS;NAS
GO:0005200 "structural constituent of cytoskeleton" evidence=IEA;ISS
GO:0006184 "GTP catabolic process" evidence=IEA
GO:0051258 "protein polymerization" evidence=IEA
GO:0003924 "GTPase activity" evidence=IEA
GO:0007094 "mitotic spindle assembly checkpoint" evidence=IDA
GO:0009987 "cellular process" evidence=IMP
GO:0005819 "spindle" evidence=IDA
GO:0019730 "antimicrobial humoral response" evidence=IMP
GO:0007052 "mitotic spindle organization" evidence=IMP
GO:0005813 "centrosome" evidence=IDA
GO:0000235 "astral microtubule" evidence=IDA
UNIPROTKB|F1N9J7 LOC100859737 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q3ZCJ7 TUBA1C "Tubulin alpha-1C chain" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z4K0 TUBA3E "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|J9NXT1 LOC608051 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q13748 TUBA3C "Tubulin alpha-3C/D chain" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RK98 LOC100510930 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1565155 Tuba3b "tubulin, alpha 3B" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|1565719 Tuba3a "tubulin, alpha 3A" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
FB|FBgn0003885 alphaTub84D "alpha-Tubulin at 84D" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P68365TBA1C_CRIGRNo assigned EC number0.92410.99330.9977yesN/A
P68367TBA4A_MACFANo assigned EC number0.90170.99331.0N/AN/A
P68366TBA4A_HUMANNo assigned EC number0.90170.99331.0yesN/A
P68361TBA1B_CRIGRNo assigned EC number0.94030.96670.9667yesN/A
P68360TBA1B_MERUNNo assigned EC number0.94030.96670.9667N/AN/A
P68363TBA1B_HUMANNo assigned EC number0.94030.96670.9667yesN/A
P68362TBA1A_CRIGRNo assigned EC number0.94030.96670.9667yesN/A
P18258TBA1_PARLINo assigned EC number0.92880.96670.9646N/AN/A
P06605TBA3_DROMENo assigned EC number0.93840.97330.9755yesN/A
P68369TBA1A_MOUSENo assigned EC number0.94030.96670.9667yesN/A
P68368TBA4A_MOUSENo assigned EC number0.90170.99331.0yesN/A
Q71U36TBA1A_HUMANNo assigned EC number0.94030.96670.9667yesN/A
Q6P9V9TBA1B_RATNo assigned EC number0.94030.96670.9667yesN/A
Q13748TBA3C_HUMANNo assigned EC number0.94490.96670.9688yesN/A
Q2HJ86TBA1D_BOVINNo assigned EC number0.93160.97330.9712yesN/A
P08537TBA_XENLANo assigned EC number0.91740.99330.9977N/AN/A
P02550TBA1A_PIGNo assigned EC number0.93570.96670.9667yesN/A
P09644TBA5_CHICKNo assigned EC number0.91050.96670.9732noN/A
P41383TBA2_PATVUNo assigned EC number0.93340.96670.9646N/AN/A
P36220TBA_TORMANo assigned EC number0.93800.96670.9667N/AN/A
Q28IX8TBA_XENTRNo assigned EC number0.92660.96670.9710yesN/A
P52273TBA_BOMMONo assigned EC number0.93620.97330.9755N/AN/A
A5A6J1TBA1A_PANTRNo assigned EC number0.94030.96670.9667noN/A
Q94572TBA3_HOMAMNo assigned EC number0.90270.98000.9800N/AN/A
Q32KN8TBA3_BOVINNo assigned EC number0.94260.96670.9688yesN/A
Q3ZCJ7TBA1C_BOVINNo assigned EC number0.92410.99330.9977yesN/A
Q5XIF6TBA4A_RATNo assigned EC number0.90170.99331.0yesN/A
Q06331TBA_ENTDONo assigned EC number0.91970.96670.9667N/AN/A
Q2XVP4TBA1B_PIGNo assigned EC number0.94030.96670.9667yesN/A
Q6AYZ1TBA1C_RATNo assigned EC number0.92180.99330.9977yesN/A
P68373TBA1C_MOUSENo assigned EC number0.92410.99330.9977yesN/A
P68370TBA1A_RATNo assigned EC number0.94030.96670.9667yesN/A
Q4R538TBA1B_MACFANo assigned EC number0.94030.96670.9667N/AN/A
Q68FR8TBA3_RATNo assigned EC number0.94490.96670.9688yesN/A
P05214TBA3_MOUSENo assigned EC number0.94490.96670.9688yesN/A
P06603TBA1_DROMENo assigned EC number0.94300.97330.9755yesN/A
Q6PEY2TBA3E_HUMANNo assigned EC number0.93340.96670.9688noN/A
P06604TBA2_DROMENo assigned EC number0.90840.99110.9955yesN/A
P05213TBA1B_MOUSENo assigned EC number0.94030.96670.9667yesN/A
P91910TBA3_CAEELNo assigned EC number0.87130.99550.9977yesN/A
Q8T6A5TBA1_APLCANo assigned EC number0.93340.96670.9667N/AN/A
P81947TBA1B_BOVINNo assigned EC number0.94030.96670.9667yesN/A
P81948TBA4A_BOVINNo assigned EC number0.90170.99331.0yesN/A
Q9BQE3TBA1C_HUMANNo assigned EC number0.91960.99330.9977yesN/A
Q25008TBA1_HOMAMNo assigned EC number0.88910.99770.9977N/AN/A
P18288TBAT_ONCMYNo assigned EC number0.94720.96670.9688N/AN/A
Q91060TBA_NOTVINo assigned EC number0.92660.96670.9688N/AN/A
Q8WQ47TBA_LEPDSNo assigned EC number0.90620.99330.9955N/AN/A
P30436TBA_ONCKENo assigned EC number0.91340.97330.9755N/AN/A
Q5R1W4TBA1B_PANTRNo assigned EC number0.93800.96670.9667noN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query451
cd02186434 cd02186, alpha_tubulin, The tubulin superfamily in 0.0
PTZ00335448 PTZ00335, PTZ00335, tubulin alpha chain; Provision 0.0
PLN00221450 PLN00221, PLN00221, tubulin alpha chain; Provision 0.0
COG5023443 COG5023, COG5023, Tubulin [Cytoskeleton] 0.0
cd06059382 cd06059, Tubulin, The tubulin superfamily includes 1e-177
cd02187425 cd02187, beta_tubulin, The tubulin superfamily inc 1e-163
PTZ00010445 PTZ00010, PTZ00010, tubulin beta chain; Provisiona 1e-150
PLN00220447 PLN00220, PLN00220, tubulin beta chain; Provisiona 1e-146
cd00286328 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includ 1e-143
cd02188431 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquit 1e-108
cd02190379 cd02190, epsilon_tubulin, The tubulin superfamily 1e-101
PTZ00387465 PTZ00387, PTZ00387, epsilon tubulin; Provisional 1e-97
PLN00222454 PLN00222, PLN00222, tubulin gamma chain; Provision 3e-89
pfam00091210 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase do 1e-79
smart00864192 smart00864, Tubulin, Tubulin/FtsZ family, GTPase d 2e-79
pfam03953126 pfam03953, Tubulin_C, Tubulin C-terminal domain 1e-71
cd02189446 cd02189, delta_tubulin, The tubulin superfamily in 1e-59
smart00865120 smart00865, Tubulin_C, Tubulin/FtsZ family, C-term 1e-24
cd02202349 cd02202, FtsZ_type2, FtsZ is a GTPase that is simi 0.003
>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information 
 Score =  978 bits (2531), Expect = 0.0
 Identities = 394/433 (90%), Positives = 423/433 (97%)

Query: 2   RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGKH 61
           RE ISIH+GQAG+QIGNACWELYCLEHGIQPDGQMPSDK IGGGDD+F+TFFSETG+GKH
Sbjct: 1   REVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKH 60

Query: 62  VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDR 121
           VPRAVF+DLEPTV+DEVRTGTYRQLFHPEQLISGKEDAANN+ARGHYTIGKEIIDLVLDR
Sbjct: 61  VPRAVFIDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIIDLVLDR 120

Query: 122 VRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPAPQVSTSV 181
           +RKLAD CTGLQGFLIFHSFGGGTGSGF SLL+ER+SVDYGKKSKL++ +YP+PQVST+V
Sbjct: 121 IRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDYGKKSKLEFTVYPSPQVSTAV 180

Query: 182 VEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITAS 241
           VEPYNSVLTTH+ LEHSDC+FM DNEAIYDICRRNLDIERPTYTNLNRLI+Q+VSSITAS
Sbjct: 181 VEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITAS 240

Query: 242 LRFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACFEPANQ 301
           LRFDGALNVDL EFQTNLVP+PR+HFPLV+YAPI+SAEKAYHEQLSVAEITNACFEPANQ
Sbjct: 241 LRFDGALNVDLNEFQTNLVPYPRIHFPLVSYAPIISAEKAYHEQLSVAEITNACFEPANQ 300

Query: 302 MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 361
           MVKCDPRHGKYMACC+LYRGDVVPKDVN+A+ATIKTKRTIQFVDWCPTGFKVGINYQPPT
Sbjct: 301 MVKCDPRHGKYMACCLLYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKVGINYQPPT 360

Query: 362 VVPGGDLAKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYAKRAFIHWYVGEGMEEGEFSEA 421
           VVPGGDLAKVQRAVCMLSNTTAIAEAW RLDHKFDLMY+KRAF+HWYVGEGMEEGEFSEA
Sbjct: 361 VVPGGDLAKVQRAVCMLSNTTAIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEA 420

Query: 422 REDLGALEKDYEE 434
           REDL ALEKDYEE
Sbjct: 421 REDLAALEKDYEE 433

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-terminal nucleotide-binding region, an intermediate taxol-binding region and the carboxy-terminal region which probably constitutes the binding surface for motor proteins. Length = 434
>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional Back     alignment and domain information
>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional Back     alignment and domain information
>gnl|CDD|215710 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|214867 smart00864, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|217812 pfam03953, Tubulin_C, Tubulin C-terminal domain Back     alignment and domain information
>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|214868 smart00865, Tubulin_C, Tubulin/FtsZ family, C-terminal domain Back     alignment and domain information
>gnl|CDD|100022 cd02202, FtsZ_type2, FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 451
COG5023443 Tubulin [Cytoskeleton] 100.0
PLN00221450 tubulin alpha chain; Provisional 100.0
PTZ00335448 tubulin alpha chain; Provisional 100.0
PTZ00010445 tubulin beta chain; Provisional 100.0
PLN00220447 tubulin beta chain; Provisional 100.0
cd02186434 alpha_tubulin The tubulin superfamily includes fiv 100.0
PLN00222454 tubulin gamma chain; Provisional 100.0
cd02188431 gamma_tubulin Gamma-tubulin is a ubiquitous phylog 100.0
cd02187425 beta_tubulin The tubulin superfamily includes five 100.0
PTZ00387465 epsilon tubulin; Provisional 100.0
KOG1374|consensus448 100.0
cd02190379 epsilon_tubulin The tubulin superfamily includes f 100.0
cd02189446 delta_tubulin The tubulin superfamily includes fiv 100.0
cd06059382 Tubulin The tubulin superfamily includes five dist 100.0
KOG1376|consensus407 100.0
KOG1375|consensus369 100.0
cd00286328 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin 100.0
PF00091216 Tubulin: Tubulin/FtsZ family, GTPase domain; Inter 100.0
cd06060493 misato Human Misato shows similarity with Tubulin/ 100.0
smart00864192 Tubulin Tubulin/FtsZ family, GTPase domain. This d 100.0
cd02202349 FtsZ_type2 FtsZ is a GTPase that is similar to the 99.97
KOG2530|consensus483 99.97
cd02191303 FtsZ FtsZ is a GTPase that is similar to the eukar 99.95
TIGR00065349 ftsZ cell division protein FtsZ. This family consi 99.93
cd02201304 FtsZ_type1 FtsZ is a GTPase that is similar to the 99.92
PRK13018378 cell division protein FtsZ; Provisional 99.9
PF03953126 Tubulin_C: Tubulin C-terminal domain; InterPro: IP 99.89
PRK09330384 cell division protein FtsZ; Validated 99.87
PF14881180 Tubulin_3: Tubulin domain 99.82
PF10644115 Misat_Tub_SegII: Misato Segment II tubulin-like do 99.43
COG0206338 FtsZ Cell division GTPase [Cell division and chrom 99.39
smart00865120 Tubulin_C Tubulin/FtsZ family, C-terminal domain. 98.3
PF13809345 Tubulin_2: Tubulin like 97.28
>COG5023 Tubulin [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=5.7e-132  Score=948.49  Aligned_cols=436  Identities=62%  Similarity=1.087  Sum_probs=420.7

Q ss_pred             CEeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCccceeeeCCCCccccceeEeCCCCcccccccc
Q psy2780           1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGKHVPRAVFVDLEPTVVDEVRT   80 (451)
Q Consensus         1 MrEiitiq~Gq~Gn~IG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~lliD~e~~~i~~~~~   80 (451)
                      ||||||||+||||||||++||+++|+||||.++|.+.+...  ...++.++||+|.+.++|+||||+||+||++|+.++.
T Consensus         1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~--~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~   78 (443)
T COG5023           1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSD--EGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRN   78 (443)
T ss_pred             CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCcc--cccccccceeeecCCCccccceEEEecCcchHhhhcc
Confidence            99999999999999999999999999999999998655433  4457899999999999999999999999999999999


Q ss_pred             ccccccCCccccccCCccccCccCccccccchhHHHHHHHHHHhhhhhccCCCceeeEeecCCCccccchhHHHHHhhhh
Q psy2780          81 GTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVD  160 (451)
Q Consensus        81 ~~~~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSGlgs~lle~l~d~  160 (451)
                      |+|+.+|+|++++.+++|+|||||+|+|+.|+++.|.++|+|||++|.||.||||+++||+|||||||+|+.|+|+|+++
T Consensus        79 g~y~~lf~Pen~i~gkegAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~e  158 (443)
T COG5023          79 GPYGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREE  158 (443)
T ss_pred             CccccccChhheeeccccccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcceeEEEEecCCCCCCccchhhHHHHhhhhhccccceeEEecchhHHhhhhccCCCCCCChhhhhHHHHHhhhcCcc
Q psy2780         161 YGKKSKLQYAIYPAPQVSTSVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA  240 (451)
Q Consensus       161 y~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~  240 (451)
                      ||||.+.+++|+|.++.++++|||||++|++++|.++||+++++||++|+++|.+.|++++|+|.++|++||++++++|.
T Consensus       159 ypkK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~y~~lN~LIs~VmSsvTt  238 (443)
T COG5023         159 YPKKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVTT  238 (443)
T ss_pred             cchhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhhh
Confidence            99999999999999899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCcccccccccCCccCCccccccccccccCchhhhcccccCHHHHHHhhcCCCCCccccCCCCCceeeeecccc
Q psy2780         241 SLRFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYR  320 (451)
Q Consensus       241 ~~r~~~~~~~~l~~~~~~L~p~p~~~f~~~s~~pl~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~~~~~~~ls~~~~~R  320 (451)
                      ++||||++|.||+++.+||||+||+||+.++|+|+++..+..+++.++.++++++|+++|||.+|+|+.++|++++.++|
T Consensus       239 slRfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~s~~~~~~~~~sv~evt~~~f~p~N~mv~~dpr~g~y~~~~~l~r  318 (443)
T COG5023         239 SLRFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSCDPRKGRYMAVCLLFR  318 (443)
T ss_pred             eeecCccccchHHHHHhcCCCCCcccccccccCcccchhhHHHhcccHHHHHHHHhCcccceeeecCCCCeeeehhHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCChhhHHHHHHhhhccCccCceecCCCCceeeecCCCCcccCCCCccchhchhhhccCCchHHHHHHHHHHHHHHHhh
Q psy2780         321 GDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYA  400 (451)
Q Consensus       321 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~~~~  400 (451)
                      |++.++++++++.+++.|++.+|++|+|+++++++|+.+|.     ...+++.++++|+|+|+|...|+++.+||++||+
T Consensus       319 G~v~~~dV~~a~~~v~~k~~~~Fv~W~P~~~~vai~~~~P~-----~~~~~~~s~~~lsNtTsi~e~fkr~~~qFd~mf~  393 (443)
T COG5023         319 GDVDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPPS-----EPAEVDVSGCMLSNTTSIAEAFKRIDDQFDLMFK  393 (443)
T ss_pred             cCCCHHHHHHHHHHHHhcCcccccccCCcceeeeeeccCCc-----ccccceeeeEeecCcHHHHHHHHHhhhHHHHHHH
Confidence            99999999999999999999999999999999999999883     3345678899999999999999999999999999


Q ss_pred             cccceeccccCCCCcchHHHHHHHHHHHHHHHHHhccccCCCC
Q psy2780         401 KRAFIHWYVGEGMEEGEFSEAREDLGALEKDYEEMGEEAGEGG  443 (451)
Q Consensus       401 rkAflH~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~~~~~~~~~  443 (451)
                      ||||||||+++||||+||.||++.+++|.++|++++.+..+++
T Consensus       394 krAFlhwY~~egmee~EFsEare~~~~L~~eY~~~~~~s~~~~  436 (443)
T COG5023         394 KRAFLHWYVGEGMEEGEFSEAREDVADLEEEYEAAEQDSYLDD  436 (443)
T ss_pred             hhHHHHHHhhccCcccchhhHHHHHHHHHHHHHHhccccccch
Confidence            9999999999999999999999999999999999987765544

>PLN00221 tubulin alpha chain; Provisional Back     alignment and domain information
>PTZ00335 tubulin alpha chain; Provisional Back     alignment and domain information
>PTZ00010 tubulin beta chain; Provisional Back     alignment and domain information
>PLN00220 tubulin beta chain; Provisional Back     alignment and domain information
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>PLN00222 tubulin gamma chain; Provisional Back     alignment and domain information
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>PTZ00387 epsilon tubulin; Provisional Back     alignment and domain information
>KOG1374|consensus Back     alignment and domain information
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>KOG1376|consensus Back     alignment and domain information
>KOG1375|consensus Back     alignment and domain information
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins Back     alignment and domain information
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria Back     alignment and domain information
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>KOG2530|consensus Back     alignment and domain information
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>TIGR00065 ftsZ cell division protein FtsZ Back     alignment and domain information
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>PRK13018 cell division protein FtsZ; Provisional Back     alignment and domain information
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins Back     alignment and domain information
>PRK09330 cell division protein FtsZ; Validated Back     alignment and domain information
>PF14881 Tubulin_3: Tubulin domain Back     alignment and domain information
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology [] Back     alignment and domain information
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning] Back     alignment and domain information
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain Back     alignment and domain information
>PF13809 Tubulin_2: Tubulin like Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query451
3du7_A449 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 0.0
4i4t_A450 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 0.0
4drx_A437 Gtp-Tubulin In Complex With A Darpin Length = 437 0.0
3ryc_A451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 0.0
3hkb_A451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 0.0
1z2b_A448 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 0.0
1sa0_A451 Tubulin-Colchicine: Stathmin-Like Domain Complex Le 0.0
1ffx_A451 Tubulin:stathmin-Like Domain Complex Length = 451 0.0
1tub_A440 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 0.0
2xrp_B452 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 0.0
1jff_A451 Refined Structure Of Alpha-Beta Tubulin From Zinc-I 0.0
4ffb_A447 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 0.0
4f61_B445 Tubulin:stathmin-Like Domain Complex Length = 445 1e-97
3ryc_B445 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 1e-97
4drx_B431 Gtp-Tubulin In Complex With A Darpin Length = 431 2e-97
3du7_B445 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 2e-97
1z2b_B445 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 2e-97
1ffx_B445 Tubulin:stathmin-Like Domain Complex Length = 445 3e-97
2xrp_A445 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 3e-97
1tub_B427 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 3e-97
4i4t_B445 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 3e-97
4ffb_B463 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 2e-94
2bto_A473 Structure Of Btuba From Prosthecobacter Dejongeii L 8e-79
2btq_B426 Structure Of Btubab Heterodimer From Prosthecobacte 7e-78
3cb2_A475 Crystal Structure Of Human Gamma-Tubulin Bound To G 5e-57
1z5v_A474 Crystal Structure Of Human Gamma-Tubulin Bound To G 5e-57
>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 449 Back     alignment and structure 
Iteration: 1

 Score =  852 bits (2202), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/432 (91%), Positives = 415/432 (96%)
Query: 1   MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGK 60
           MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDK IGGGDDSF+TFFSETGAGK
Sbjct: 1   MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 61  HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLD 120
           HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 61  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 121 RVRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERISVDYGKKSKLQYAIYPAPQVSTS 180
           RVRKLADQCTGLQGFL+FH            LLMER+SVDYGKKSKL+++IYPAPQVST+
Sbjct: 121 RVRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 181 VVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
           VVEPYNS+LTTHTTLEHSDCAFM DNEAIYDICRRNLDIERPTYTNLNRL+SQIVSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLMSQIVSSITA 240
Query: 241 SLRFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACFEPAN 300
           SLRFDGALNVDLTEFQTNLVP+PR+HFPL TYAP++SAEKAYHEQLSVAEITNACFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 301 QMVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360
           QMVKCDPRHGKYMACC+LYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINYQPP
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360
Query: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYAKRAFIHWYVGEGMEEGEFSE 420
           TVVPGGDLAKVQRAVCMLSNTTA+AEAW RLDHKFDLMYAKRAF+HWYVGEGMEEGEFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
Query: 421 AREDLGALEKDY 432
           ARED+ ALEKDY
Sbjct: 421 AREDMAALEKDY 432
>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 450 Back     alignment and structure
>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin Length = 437 Back     alignment and structure
>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 448 Back     alignment and structure
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 440 Back     alignment and structure
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 452 Back     alignment and structure
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced Sheets Stabilized With Taxol Length = 451 Back     alignment and structure
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 447 Back     alignment and structure
>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin Length = 431 Back     alignment and structure
>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 445 Back     alignment and structure
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 427 Back     alignment and structure
>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 445 Back     alignment and structure
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 463 Back     alignment and structure
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii Length = 473 Back     alignment and structure
>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter Dejongeii Length = 426 Back     alignment and structure
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp Length = 475 Back     alignment and structure
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gtpgammas Length = 474 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query451
3ryc_A451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 0.0
3ryc_B445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 0.0
3cb2_A475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 0.0
2bto_A473 Tubulin btuba; bacterial tubulin, polymerization, 0.0
2btq_B426 Tubulin btubb; structural protein, cytoskeletal pr 0.0
2e4h_B36 Tubulin alpha-ubiquitous chain; cytoskeleton, CAP- 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
3v3t_A360 Cell division GTPase FTSZ, diverged; TUBZ, tubulin 1e-05
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A* 2wbe_A* 3dco_A* ... Length = 451 Back     alignment and structure
 Score =  819 bits (2117), Expect = 0.0
 Identities = 415/451 (92%), Positives = 437/451 (96%), Gaps = 1/451 (0%)

Query: 1   MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGK 60
           MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDK IGGGDDSF+TFFSETGAGK
Sbjct: 1   MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 61  HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLD 120
           HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 61  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 121 RVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPAPQVSTS 180
           R+RKLADQCTGLQGFL+FHSFGGGTGSGFTSLLMER+SVDYGKKSKL+++IYPAPQVST+
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 181 VVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
           VVEPYNS+LTTHTTLEHSDCAFM DNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240

Query: 241 SLRFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACFEPAN 300
           SLRFDGALNVDLTEFQTNLVP+PR+HFPL TYAP++SAEKAYHEQLSVAEITNACFEPAN
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300

Query: 301 QMVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360
           QMVKCDPRHGKYMACC+LYRGDVVPKDVN+AIATIKTKR+IQFVDWCPTGFKVGINYQPP
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP 360

Query: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYAKRAFIHWYVGEGMEEGEFSE 420
           TVVPGGDLAKVQRAVCMLSNTTAIAEAW RLDHKFDLMYAKRAF+HWYVGEGMEEGEFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420

Query: 421 AREDLGALEKDYEEMGEEAGEGGEDAEEGED 451
           ARED+ ALEKDYEE+       GE  EEGE+
Sbjct: 421 AREDMAALEKDYEEV-GVDSVEGEGEEEGEE 450
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B* 1sa0_B* 1sa1_B* ... Length = 445 Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Length = 475 Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Length = 473 Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Length = 426 Back     alignment and structure
>2e4h_B Tubulin alpha-ubiquitous chain; cytoskeleton, CAP-Gly, complex structure, solution structure, CLIP, structural protein; NMR {Homo sapiens} Length = 36 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Length = 360 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query451
3ryc_A451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 100.0
3ryc_B445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 100.0
3cb2_A475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 100.0
2btq_B426 Tubulin btubb; structural protein, cytoskeletal pr 100.0
2bto_A473 Tubulin btuba; bacterial tubulin, polymerization, 100.0
1w5f_A353 Cell division protein FTSZ; complete proteome, GTP 100.0
2vap_A364 FTSZ, cell division protein FTSZ homolog 1; polyme 100.0
2r75_1338 Cell division protein FTSZ; GTPase, tubulin-like, 100.0
1ofu_A320 FTSZ, cell division protein FTSZ; bacterial cell d 100.0
1rq2_A382 Cell division protein FTSZ; cell cycle, tubulin, G 100.0
2vaw_A394 FTSZ, cell division protein FTSZ; bacterial cell d 100.0
2vxy_A382 FTSZ, cell division protein FTSZ; GTP-binding, nuc 100.0
3m89_A427 FTSZ/tubulin-related protein; partition, TUBZ, GTP 100.0
4dxd_A396 Cell division protein FTSZ; rossmann fold, GTPase, 99.97
3v3t_A360 Cell division GTPase FTSZ, diverged; TUBZ, tubulin 99.96
4ei7_A389 Plasmid replication protein REPX; GTP hydrolase, p 99.74
3r4v_A315 Putative uncharacterized protein; tubulin, unknown 99.22
2e4h_B36 Tubulin alpha-ubiquitous chain; cytoskeleton, CAP- 96.98
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3ut5_A* 4eb6_A* 4f61_A* 4f6r_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* ... Back     alignment and structure
Probab=100.00  E-value=7.7e-125  Score=961.01  Aligned_cols=441  Identities=93%  Similarity=1.491  Sum_probs=423.5

Q ss_pred             CEeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCccceeeeCCCCccccceeEeCCCCcccccccc
Q psy2780           1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGKHVPRAVFVDLEPTVVDEVRT   80 (451)
Q Consensus         1 MrEiitiq~Gq~Gn~IG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~lliD~e~~~i~~~~~   80 (451)
                      |||||+||+||||||||.+||+++|.||+|+++|.+.++++....+++.++||+|.+.++|+||||||||||++|++++.
T Consensus         1 mrEii~iqvGQcGnQIG~~~We~~~~EHgi~~~g~~~~~~~~~~~~~~~~~fF~e~~~gk~vPRavlvDlEp~vid~v~~   80 (451)
T 3ryc_A            1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT   80 (451)
T ss_dssp             CCCEEEEEEHHHHHHHHHHHHHHHHHHHTCCTTSCCCCC-------CGGGGTEEECTTSCEEESEEEEESSSHHHHHHHH
T ss_pred             CceEEEEeccCchhHHHHHHHHHHHhhcCCCCCCCcCCcccccccccchhhhcccCCCCccccceeeecCCcchhheeee
Confidence            99999999999999999999999999999999999876654333467899999999999999999999999999999999


Q ss_pred             ccccccCCccccccCCccccCccCccccccchhHHHHHHHHHHhhhhhccCCCceeeEeecCCCccccchhHHHHHhhhh
Q psy2780          81 GTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVD  160 (451)
Q Consensus        81 ~~~~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSGlgs~lle~l~d~  160 (451)
                      |+++++|+|++++++++|+|||||+|||+.|+++.|+++|+||+++|+||++|||+++||+|||||||+|+.|+|.|+++
T Consensus        81 g~~~~lf~p~~~i~gk~gAgNNwA~G~yt~G~e~~d~v~d~IRk~~E~cD~lqGF~i~hSlgGGTGSG~gs~lle~L~~e  160 (451)
T 3ryc_A           81 GTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVD  160 (451)
T ss_dssp             STTTTTSCGGGEEECSSCCTTCHHHHHHTSHHHHHHHHHHHHHHHHHTCSSCCEEEEEEESSSHHHHHHHHHHHHHHHHH
T ss_pred             cccccccCHHHeeeccccccCCCCeeecccchHhHHHHHHHHHHHHHcCCCccceEEEeccCCCCCccHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcceeEEEEecCCCCCCccchhhHHHHhhhhhccccceeEEecchhHHhhhhccCCCCCCChhhhhHHHHHhhhcCcc
Q psy2780         161 YGKKSKLQYAIYPAPQVSTSVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA  240 (451)
Q Consensus       161 y~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~  240 (451)
                      ||++.+++++|+|++..+++++++||++|++++|.+++|+++++||++|+++|.+.+++..|+|.++|++||++++++|+
T Consensus       161 y~kk~~~~~~v~P~~~~s~~vvepYNa~Lsl~~L~e~sD~~~~idNeaL~~ic~~~l~i~~p~y~~lN~lIa~~~s~iT~  240 (451)
T 3ryc_A          161 YGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA  240 (451)
T ss_dssp             TTTCEEEEEEEECCTTTCCCTTHHHHHHHHHHHHGGGCSEEEEEEHHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             cCcceEEEEEEecCCCcccccceehHHHHHHHHHHhcccceeEeccHHHHHHHHHhccCCCCCchhhHHHHHhccccccc
Confidence            99999999999999888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCcccccccccCCccCCccccccccccccCchhhhcccccCHHHHHHhhcCCCCCccccCCCCCceeeeecccc
Q psy2780         241 SLRFDGALNVDLTEFQTNLVPFPRVHFPLVTYAPIVSAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYR  320 (451)
Q Consensus       241 ~~r~~~~~~~~l~~~~~~L~p~p~~~f~~~s~~pl~~~~~~~~~~~~~~~l~~~~~~~~n~~~~~~~~~~~~ls~~~~~R  320 (451)
                      ++||||.+|.|+.++.+|||||||+||++++|+|+.+..+..++++++.+|++++|++.|||.+|+|++|+|++|++++|
T Consensus       241 slRf~G~lN~Dl~~l~tnLVP~PrlHF~~~s~aPl~s~~~~~~~~~sv~elt~~~f~~~n~m~~~dp~~gky~a~~~~~R  320 (451)
T 3ryc_A          241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYR  320 (451)
T ss_dssp             HHHTTCSSSCSHHHHHHHHCSSSSCCCCEEEEECCCBSSSCCCCCCCHHHHHHHTTCGGGBSSCCCGGGSCEEEEEEEEE
T ss_pred             ccccCcccccCHHHHhhccCCCCceeeeccccCccccccccccccCCHHHHHHHHhccccceEecCCCCCchheehhhcc
Confidence            99999999999999999999999999999999999999888899999999999999999999999999999999999999


Q ss_pred             ccCChhhHHHHHHhhhccCccCceecCCCCceeeecCCCCcccCCCCccchhchhhhccCCchHHHHHHHHHHHHHHHhh
Q psy2780         321 GDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWGRLDHKFDLMYA  400 (451)
Q Consensus       321 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~~~~  400 (451)
                      |+++++++.+++..+|.|++++|++|+|+++|+++|++||.+.|+.+++++++++++|+|+|+|.+.|+++.+||++||+
T Consensus       321 G~v~~~dv~~~i~~ik~k~~~~Fv~W~p~~~kv~i~~~pP~~~p~~~la~~~~s~~~lsNsTaI~~~f~rl~~kFd~m~~  400 (451)
T 3ryc_A          321 GDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA  400 (451)
T ss_dssp             ESCCHHHHHHHHHHHHHHCCCCBCTTSCEEEEEEEECSCCCCCTTSSBCCCSEEEEEEEEEGGGHHHHHHHHHHHHHHHT
T ss_pred             cCCCHHHHHHHHHHHhhcCCcceEEEccCceeeeeeccCCccCCCccccccceeeEEecCchHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccceeccccCCCCcchHHHHHHHHHHHHHHHHHhccccCC
Q psy2780         401 KRAFIHWYVGEGMEEGEFSEAREDLGALEKDYEEMGEEAGE  441 (451)
Q Consensus       401 rkAflH~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~~~~~~~  441 (451)
                      ||||||||++|||||+||.||+++|.+|+++|++++.+..|
T Consensus       401 krAFvHwY~~eGmee~eF~EA~e~l~~L~~eY~~~~~~~~~  441 (451)
T 3ryc_A          401 KRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSVE  441 (451)
T ss_dssp             TTTTTHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred             cceeHhhhcCCccchhhHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            99999999999999999999999999999999999876654
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3ut5_B* 4eb6_B* 4f6r_B* 4f61_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 4aqv_B* 4aqw_B* 4atu_A* ... Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Back     alignment and structure
>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding, multigene family, septation, tubulin, filament, Z-ring, GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga maritima} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin homolog, GTPase, septation, cell cycle, GTP-binding; HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A* 1fsz_A* 1w5e_A* Back     alignment and structure
>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1* Back     alignment and structure
>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling protein; HET: CIT; 1.86A {Mycobacterium tuberculosis} SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A* 2q1x_A* Back     alignment and structure
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein, tubulin homolog, nucleotide-binding, GTPase, septation, cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding, septation, cytoplasm, B.subtilis, cell cycle; HET: CIT; 1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A* 2rhl_A* 2rho_A* Back     alignment and structure
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding, nucleotide-BIND structural protein; HET: GSP; 2.00A {Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A* Back     alignment and structure
>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding, cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A {Staphylococcus aureus} PDB: 3vo8_A* Back     alignment and structure
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Back     alignment and structure
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A* Back     alignment and structure
>3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET: GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A* Back     alignment and structure
>2e4h_B Tubulin alpha-ubiquitous chain; cytoskeleton, CAP-Gly, complex structure, solution structure, CLIP, structural protein; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 451
d1tuba1245 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus 1e-135
d1tubb1243 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus 1e-132
d2btoa1244 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthec 1e-123
d1tuba2195 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (S 1e-108
d1tubb2184 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Su 4e-93
d2btoa2180 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosth 6e-83
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 245 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin alpha-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  385 bits (991), Expect = e-135
 Identities = 230/245 (93%), Positives = 241/245 (98%)

Query: 1   MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGK 60
           MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDK IGGGDDSF+TFFSETGAGK
Sbjct: 1   MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 61  HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLD 120
           HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANNYARGHYTIGKEIIDLVLD
Sbjct: 61  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 121 RVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVDYGKKSKLQYAIYPAPQVSTS 180
           R+RKLADQCTGLQGF +FHSFGGGTGSGFTSLLMER+SVDYGKKSKL+++IYPAPQVST+
Sbjct: 121 RIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 181 VVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
           VVEPYNS+LTTHTTLEHSDCAFM DNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query: 241 SLRFD 245
           SLRFD
Sbjct: 241 SLRFD 245
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 243 Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 244 Back     information, alignment and structure
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 195 Back     information, alignment and structure
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 184 Back     information, alignment and structure
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 180 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query451
d1tuba1245 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 100.0
d1tubb1243 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 100.0
d2btoa1244 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 100.0
d1tuba2195 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 100.0
d1tubb2184 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 100.0
d2btoa2180 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 100.0
d1ofua1198 Cell-division protein FtsZ {Pseudomonas aeruginosa 99.68
d1w5fa1194 Cell-division protein FtsZ {Thermotoga maritima [T 99.65
d2vapa1209 Cell-division protein FtsZ {Archaeon Methanococcus 99.64
d1rq2a1198 Cell-division protein FtsZ {Mycobacterium tubercul 99.62
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin alpha-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=1.1e-76  Score=559.72  Aligned_cols=245  Identities=94%  Similarity=1.477  Sum_probs=237.3

Q ss_pred             CEeEEEEecCchhhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCccceeeeCCCCccccceeEeCCCCcccccccc
Q psy2780           1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKMIGGGDDSFSTFFSETGAGKHVPRAVFVDLEPTVVDEVRT   80 (451)
Q Consensus         1 MrEiitiq~Gq~Gn~IG~~~w~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~F~e~~~~~~~pR~lliD~e~~~i~~~~~   80 (451)
                      ||||||||+||||||||.+||+++++||+++++|....+......++..++||+|.++++|+|||||||+||++|++++.
T Consensus         1 MrEII~iqvGQcGnQIG~~~w~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRavlvD~E~~vI~~i~~   80 (245)
T d1tuba1           1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT   80 (245)
T ss_dssp             CCCCCEECCSHHHHHHHHHHHHHHTTTCCTTTCCCCSCCTTSSTTCCCSCCSSCSSSCTTTSCSCCEEESSHHHHHHHSG
T ss_pred             CCcEEEEeccCHHHHHHHHHHHHHHHHhCcCCCCCccCccccccccccchhhhhcccCCccccceeEecCCcceeeeecc
Confidence            99999999999999999999999999999999998877665556677899999999999999999999999999999999


Q ss_pred             ccccccCCccccccCCccccCccCccccccchhHHHHHHHHHHhhhhhccCCCceeeEeecCCCccccchhHHHHHhhhh
Q psy2780          81 GTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERISVD  160 (451)
Q Consensus        81 ~~~~~~~~~~~~~~~~~gsgnnwa~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSGlgs~lle~l~d~  160 (451)
                      ++++++|++++++.+++|+|||||+|||.+|+++.|+++|.|||++|+||++|||+++||++||||||+|++|+|.|+|+
T Consensus        81 ~~~~~~f~~~~~i~~~~gsgNNwA~Gy~~~G~~~~d~i~d~iRk~~E~cD~l~gf~i~hSl~GGTGSGlGs~l~e~l~d~  160 (245)
T d1tuba1          81 GTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVD  160 (245)
T ss_dssp             GGCSCCCCSSSEEECCSCCCCSSSTTTTSHHHHTTHHHHHHHHHHTTSSSCCCCEEEECCSSCGGGTHHHHHHTHHHHHH
T ss_pred             CcchhccCccccccCCCCcccchHhhhhccchhhHHHHHHHHHHHHHhCCCcCceeeeeecCCcCcCchhHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcceeEEEEecCCCCCCccchhhHHHHhhhhhccccceeEEecchhHHhhhhccCCCCCCChhhhhHHHHHhhhcCcc
Q psy2780         161 YGKKSKLQYAIYPAPQVSTSVVEPYNSVLTTHTTLEHSDCAFMADNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA  240 (451)
Q Consensus       161 y~~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~sd~~i~~~N~~l~~~~~~~l~~~~~~~~~~N~~ia~~i~~~t~  240 (451)
                      ||++.+++++|+|+...+++++||||++|+|++|.+++|++++|||++|+++|.+.++++.|+|++||++||++|+++|+
T Consensus       161 yp~~~~~~~~V~P~~~~~~~vvqpYNtvLsl~~L~~~sD~v~~~dN~al~~i~~~~l~i~~~s~~~lN~via~~ls~~T~  240 (245)
T d1tuba1         161 YGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA  240 (245)
T ss_dssp             TTTSCEEEEECCCCSSCSTTTTHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHTSCCSSCCHHHHHHHHHHHHHHHTT
T ss_pred             cccccccceEEeccccCCCcccccchhhhhhHHHHhcCCeeEEeehHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhh
Confidence            99999999999998778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccC
Q psy2780         241 SLRFD  245 (451)
Q Consensus       241 ~~r~~  245 (451)
                      ++||.
T Consensus       241 ~~RF~  245 (245)
T d1tuba1         241 SLRFD  245 (245)
T ss_dssp             TTTSS
T ss_pred             hccCC
Confidence            99984
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure