Diaphorina citri psyllid: psy2827


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370---
MYSTQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQQIDYTEKRSLPISIPDYSYVNTEDESFVVFNIYMAGRHLCSRRLTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDALDENGTNISSPVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQNYSTASATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRAEDRLYELKALQDASRKHEITTGSCNPNRAVVSREMEN
cccccccccEEEEEEcccccccEEEEcCCccccccccccccccccccEEEEEccccHHHHHccccccEEEEEcccccccccHHHHHHHHHHcccEEEEEEECccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccHHHHHHHHccHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEEccccHHHHHHHHccccccccccccccccEEEEEcccHHHcccccccccEEEEEccccccccEEEEEEEccccHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccccccccccccccc
******T***EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSP*************************LPISIPDYSYVNTEDESFVVFNIYMAGRHLCSRRLTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDALDENGTNISSPVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQNYSTASATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRAEDRLYELKA****************************
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MYSTQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQQIDYTEKRSLPISIPDYSYVNTEDESFVVFNIYMAGRHLCSRRLTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDALDENGTNISSPVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQNYSTASATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRAEDRLYELKALQDASRKHEITTGSCNPNRAVVSREMEN

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Sorting nexin-27 Involved in endocytic trafficking (By similarity). In T lymphocytes, participates in endocytic recycling pathway. Recruits PSCDBP and HT4R to early endosomes.confidentQ96L92
Sorting nexin-27 Involved in endocytic trafficking (By similarity). In T lymphocytes, participates in endocytic recycling pathway. Recruits PSCDBP and HT4R to early endosomes.confidentA5PKA5
Sorting nexin-27 Involved in endocytic trafficking (By similarity). In T lymphocytes, participates in endocytic recycling pathway. Recruits PSCDBP and HT4R to early endosomes.confidentQ8K4V4

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0030054 [CC]cell junctionprobableGO:0005575
GO:0051641 [BP]cellular localizationprobableGO:0008150, GO:0009987, GO:0044763, GO:0051179, GO:0044699
GO:0005515 [MF]protein bindingprobableGO:0003674, GO:0005488
GO:0044444 [CC]cytoplasmic partprobableGO:0005737, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0044424
GO:0016020 [CC]membraneprobableGO:0005575
GO:0005730 [CC]nucleolusprobableGO:0005575, GO:0043232, GO:0031981, GO:0043233, GO:0005634, GO:0044464, GO:0031974, GO:0005622, GO:0044446, GO:0070013, GO:0043229, GO:0043228, GO:0044428, GO:0005623, GO:0044424, GO:0043227, GO:0043226, GO:0044422, GO:0043231

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 3QE1, chain A
Confidence level:very confident
Coverage over the Query: 8-105
View the alignment between query and template
View the model in PyMOL
Template: 3RLE, chain A
Confidence level:confident
Coverage over the Query: 45-129
View the alignment between query and template
View the model in PyMOL
Template: 4EKU, chain A
Confidence level:confident
Coverage over the Query: 222-349
View the alignment between query and template
View the model in PyMOL
Template: 3LUI, chain A
Confidence level:confident
Coverage over the Query: 146-203
View the alignment between query and template
View the model in PyMOL