Psyllid ID: psy2827

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370---
Protein Sequence
MYSTQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQQIDYTEKRSLPISIPDYSYVNTEDESFVVFNIYMAGRHLCSRRLTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDALDENGTNISSPVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQNYSTASATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRAEDRLYELKALQDASRKHEITTGSCNPNRAVVSREMEN
Secondary Structure (PSIPRED)
cccccccccEEEEEEcccccccEEEEcEEccccccccccccccccccEEEEEccccHHHHHccccccEEEEEcccccccccHHHHHHHHHHcccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccHHHHHHHHccHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEEccccHHHHHHHHccccccccccccccccEEEEEcccHHHcccccccccEEEEEccccccccEEEEEEEccccHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEccEEEEEEEcccccEEEEEccccccccEEcEEccccccccEEEccccccHHHHHccccccEEEEEccEEcccccHHHHHHHHHHcccEEEEEEEccccccHHccccccccccccccccccccccccccccccccccccccEEEEcEcccccccccccccHHHHHHHHHHHHHHHHHHHcccEEccHHHHHHHHHHHHHHccccccccEEEEEEcccccEEEEEEEccccHHHHHHHHHHHcccccHHHHHHHHHEEEEcccHHHHccccccccEEEEEEcccccccEEEEEEEEcccHHHHHHHcccHHHHHHHHHHHHHHHHcccEccHHHHHHHHHHHHHcccccccccccccccEEEEHHccc
Coil and Loop (DISEMBL)
mystqqtgprevqiaksdtgfgfnvrgqvseggqlrsingelyaplQHVSAVLAGgaaekagirkgdrilavNNVNVEGATHKQVVELIKSGGDVLSLTVIsvspeeaerleppddhsgyqqidytekrslpisipdysyvntedeSFVVFNIYMAGRHLCSRRLTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDAldengtnisspvdikillpdreviTVSVRKSATADEVYASAvpklylqspssaAYFYLFEIVEYSFERKleakefphhlyiqnystASATCLCIRKWlfsaplerslvanDDRVATFMFWMAIDAVDRGQIRAEDRLYELKALQDAsrkheittgscnpnraVVSREMEN
Flexible Loop (DISEMBL)
mystqqtgprevqiaksdtgfgfNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSpeeaerleppddhsgyqQIDYTEKRSLPISIPDYSYVNTEDESFVVFNIYMAGRHLCSRRLTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDaldengtnisspvdikillpdREVITVSVRksatadevyasavpklylqspSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQNYSTASATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRAEDRLYELKALQdasrkheittgscnpnravvsremen
Low Complexity Region (SEG)
MYSTQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQQIDYTEKRSLPISIPDYSYVNTEDESFVVFNIYMAGRHLCSRRLTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDALDENGTNISSPVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQNYSTASATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRAEDRLYELKALQDASRKHEITTGSCNPNRAVVSREMEN
Disordered region (IsUnstruct)
********************FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVIS**********************YTEKRSLPISIPDYSYVNTEDESFVVFNIYMAGRHLCSRRLTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDALDENGTNISSPVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQNYSTASATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRAEDRLYELKA****************************
Disordered Region (DISOPRED)
******T***EVQIAKSDTGFGFNVRGQV**********GELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSP**************************************************************************************************************************************VYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQNYSTASATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRAEDR**********************************
Disordered Region (DISEMBL)
***********VQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPE**********HSGYQQIDYTEKRSLPISIPDYSYVNTEDESFVVFNIYMAGRHLCSRRLTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDALDENGTNISSPVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQNYSTASATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRAEDRLYELKALQDASRKHEITTGSCNPNRA********
Disordered Region (DISPRO)
MYSTQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERL**PDDHS************LPISIPDYSYVNTEDESFVVFNIYMAGRHLCSRRLTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDALDENGTNISSPVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQNYSTASATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRAEDRLYELKALQDAS*******GSCNPNR*VVS*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYSTQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQQIDYTEKRSLPISIPDYSYVNTEDESFVVFNIYMAGRHLCSRRLTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDALDENGTNISSPVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQNYSTASATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRAEDRLYELKALQDASRKHEITTGSCNPNRAVVSREMEN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	373	2.2.26 [Sep-21-2011]
Q3UHD6	539	Sorting nexin-27 OS=Mus m	yes	N/A	0.908	0.628	0.529	1e-107
Q96L92	541	Sorting nexin-27 OS=Homo	yes	N/A	0.895	0.617	0.539	1e-107
Q8K4V4	539	Sorting nexin-27 OS=Rattu	yes	N/A	0.895	0.619	0.536	1e-107
A5PKA5	541	Sorting nexin-27 OS=Bos t	yes	N/A	0.895	0.617	0.536	1e-107
Q64512	2453	Tyrosine-protein phosphat	no	N/A	0.345	0.052	0.380	9e-14
Q12923	2485	Tyrosine-protein phosphat	no	N/A	0.348	0.052	0.393	2e-11
Q9Z250	232	Protein lin-7 homolog A O	no	N/A	0.260	0.418	0.360	3e-11
Q8JZS0	233	Protein lin-7 homolog A O	no	N/A	0.260	0.416	0.360	3e-11
O14910	233	Protein lin-7 homolog A O	no	N/A	0.260	0.416	0.360	3e-11
Q32LM6	233	Protein lin-7 homolog A O	no	N/A	0.260	0.416	0.360	3e-11

>sp|Q3UHD6|SNX27_MOUSE Sorting nexin-27 OS=Mus musculus GN=Snx27 PE=1 SV=2

 Score =  389 bits (999), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/374 (52%), Positives = 263/374 (70%), Gaps = 35/374 (9%)

Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
           PR V+I KS++G+GFNVRGQVSEGGQLRSINGELYAPLQHVSAVL GGAA++AG+RKGDR
Sbjct: 39  PRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDR 98

Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQQIDYTEK 128
           IL VN VNVEGATHKQVV+LI++G   L LTV+SV P EA+ L+P DD  G    DYTEK
Sbjct: 99  ILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEK 158

Query: 129 RSLPISIPDYSYVNTEDESFVVFNIYMAGRHLCSRR------------------------ 164
           +++PIS+P Y +V    E FVV+N+YMAGR LCS+R                        
Sbjct: 159 QAVPISVPTYKHVEQNGEKFVVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLP 218

Query: 165 ------LTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDALDENGTNISSPVDIK 218
                 L+EQQLD+RRRGLE YLEKVC++RVI ES++MQEFL+++ DEN   +S  V+++
Sbjct: 219 GKWPFSLSEQQLDARRRGLEEYLEKVCSIRVIGESDIMQEFLSES-DENYNGVSD-VELR 276

Query: 219 ILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEF 278
           + LPD   +TV V+K++T D+VY +   K+ + S ++  YF LFE++ +SF RKL   EF
Sbjct: 277 VALPDGTTVTVRVKKNSTTDQVYQAIAAKVGMDS-TTVNYFALFEVINHSFVRKLAPNEF 335

Query: 279 PHHLYIQNYSTA-SATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRAE 337
           PH LY+QNY++A   TCL IRKWLF+   E  L+ ++D   T+ F  A+D V +G I+AE
Sbjct: 336 PHKLYVQNYTSAVPGTCLTIRKWLFTTE-EEVLLNDNDLAVTYFFHQAVDDVKKGYIKAE 394

Query: 338 DRLYELKALQDASR 351
           ++ Y+L+ L +  +
Sbjct: 395 EKSYQLQKLHEQRK 408

Involved in endocytic trafficking (By similarity). In T lymphocytes, participates in endocytic recycling pathway. Recruits PSCDBP and HT4R to early endosomes.
Mus musculus (taxid: 10090)

>sp|Q96L92|SNX27_HUMAN Sorting nexin-27 OS=Homo sapiens GN=SNX27 PE=1 SV=2

 Score =  388 bits (997), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/369 (53%), Positives = 262/369 (71%), Gaps = 35/369 (9%)

Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
           PR V+I KS++G+GFNVRGQVSEGGQLRSINGELYAPLQHVSAVL GGAA++AG+RKGDR
Sbjct: 41  PRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDR 100

Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQQIDYTEK 128
           IL VN+VNVEGATHKQVV+LI++G   L LTV+SV P EA+ L+P DD  G    DYTEK
Sbjct: 101 ILEVNHVNVEGATHKQVVDLIRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEK 160

Query: 129 RSLPISIPDYSYVNTEDESFVVFNIYMAGRHLCSRR------------------------ 164
           +++PIS+P Y +V    E FVV+N+YMAGR LCS+R                        
Sbjct: 161 QAVPISVPRYKHVEQNGEKFVVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLP 220

Query: 165 ------LTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDALDENGTNISSPVDIK 218
                 L+EQQLD+RRRGLE YLEKVC++RVI ES++MQEFL+++ DEN   +S  V+++
Sbjct: 221 GKWPFSLSEQQLDARRRGLEEYLEKVCSIRVIGESDIMQEFLSES-DENYNGVSD-VELR 278

Query: 219 ILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEF 278
           + LPD   +TV V+K++T D+VY +   K+ + S ++  YF LFE++ +SF RKL   EF
Sbjct: 279 VALPDGTTVTVRVKKNSTTDQVYQAIAAKVGMDS-TTVNYFALFEVISHSFVRKLAPNEF 337

Query: 279 PHHLYIQNYSTA-SATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRAE 337
           PH LYIQNY++A   TCL IRKWLF+   E  L+ ++D   T+ F  A+D V +G I+AE
Sbjct: 338 PHKLYIQNYTSAVPGTCLTIRKWLFTTE-EEILLNDNDLAVTYFFHQAVDDVKKGYIKAE 396

Query: 338 DRLYELKAL 346
           ++ Y+L+ L
Sbjct: 397 EKSYQLQKL 405

Involved in endocytic trafficking (By similarity). In T lymphocytes, participates in endocytic recycling pathway. Recruits PSCDBP and HT4R to early endosomes.

Homo sapiens (taxid: 9606)

>sp|Q8K4V4|SNX27_RAT Sorting nexin-27 OS=Rattus norvegicus GN=Snx27 PE=1 SV=2

 Score =  388 bits (997), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/369 (53%), Positives = 261/369 (70%), Gaps = 35/369 (9%)

Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
           PR V+I KS++G+GFNVRGQVSEGGQLRSINGELYAPLQHVSAVL GGAA++AG+RKGDR
Sbjct: 39  PRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDR 98

Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQQIDYTEK 128
           IL VN VNVEGATHKQVV+LI++G   L LTV+SV P EA+ L+P DD  G    DYTEK
Sbjct: 99  ILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEK 158

Query: 129 RSLPISIPDYSYVNTEDESFVVFNIYMAGRHLCSRR------------------------ 164
           +++PIS+P Y +V    E FVV+N+YMAGR LCS+R                        
Sbjct: 159 QAVPISVPTYKHVEQNGEKFVVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLP 218

Query: 165 ------LTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDALDENGTNISSPVDIK 218
                 L+EQQLD+RRRGLE YLEKVC++RVI ES++MQEFL+++ DEN   +S  V+++
Sbjct: 219 GKWPFSLSEQQLDARRRGLEEYLEKVCSIRVIGESDIMQEFLSES-DENYNGVSD-VELR 276

Query: 219 ILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEF 278
           + LPD   +TV V+K++T D+VY +   K+ + S ++  YF LFE++ +SF RKL   EF
Sbjct: 277 VALPDGATVTVRVKKNSTTDQVYQAIAAKVGMDS-TTVNYFALFEVINHSFVRKLAPNEF 335

Query: 279 PHHLYIQNYSTA-SATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRAE 337
           PH LY+QNY++A   TCL IRKWLF+   E  L+ ++D   T+ F  A+D V +G I+AE
Sbjct: 336 PHKLYVQNYTSAVPGTCLTIRKWLFTTE-EEVLLNDNDLAVTYFFHQAVDDVKKGYIKAE 394

Query: 338 DRLYELKAL 346
           ++ Y+L+ L
Sbjct: 395 EKSYQLQKL 403

Involved in endocytic trafficking (By similarity). In T lymphocytes, participates in endocytic recycling pathway. Recruits PSCDBP and HT4R to early endosomes.

Rattus norvegicus (taxid: 10116)

>sp|A5PKA5|SNX27_BOVIN Sorting nexin-27 OS=Bos taurus GN=SNX27 PE=2 SV=1

 Score =  387 bits (995), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/369 (53%), Positives = 261/369 (70%), Gaps = 35/369 (9%)

Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
           PR V+I KS++G+GFNVRGQVSEGGQLRSINGELYAPLQHVSAVL GGAA++AG+RKGDR
Sbjct: 41  PRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDR 100

Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQQIDYTEK 128
           IL VN VNVEGATHKQVV+LI++G   L LTV+SV P EA+ L+P DD  G    DYTEK
Sbjct: 101 ILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTEK 160

Query: 129 RSLPISIPDYSYVNTEDESFVVFNIYMAGRHLCSRR------------------------ 164
           +++PIS+P Y +V    E FVV+N+YMAGR LCS+R                        
Sbjct: 161 QAVPISVPTYKHVEQNGEKFVVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLP 220

Query: 165 ------LTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDALDENGTNISSPVDIK 218
                 L+EQQLD+RRRGLE YLEKVC++RVI ES++MQEFL+++ DEN   +S  V+++
Sbjct: 221 GKWPFSLSEQQLDARRRGLEEYLEKVCSIRVIGESDIMQEFLSES-DENYNGVSD-VELR 278

Query: 219 ILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEF 278
           + LPD   +TV V+K++T D+VY +   K+ + S ++  YF LFE++ +SF RKL   EF
Sbjct: 279 VALPDGTTVTVRVKKNSTTDQVYQAIAAKVGMDS-TTVNYFALFEVINHSFVRKLAPNEF 337

Query: 279 PHHLYIQNYSTA-SATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRAE 337
           PH LY+QNY++A   TCL IRKWLF+   E  L+ ++D   T+ F  A+D V +G I+AE
Sbjct: 338 PHKLYVQNYTSAVPGTCLTIRKWLFTTE-EEILLNDNDLAVTYFFHQAVDDVKKGYIKAE 396

Query: 338 DRLYELKAL 346
           ++ Y+L+ L
Sbjct: 397 EKSYQLQKL 405

Involved in endocytic trafficking (By similarity). In T lymphocytes, participates in endocytic recycling pathway. Recruits PSCDBP and HT4R to early endosomes.

Bos taurus (taxid: 9913)

>sp|Q64512|PTN13_MOUSE Tyrosine-protein phosphatase non-receptor type 13 OS=Mus musculus GN=Ptpn13 PE=1 SV=2

 Score = 78.2 bits (191), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 56/147 (38%), Positives = 80/147 (54%), Gaps = 18/147 (12%)

Query: 11   EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
            EV++AK+D   G +V G V+   +    +G +Y     V A++  GAAE  G I KGDR+
Sbjct: 1357 EVELAKTDGSLGISVTGGVNTSVR----HGGIY-----VKAIIPKGAAESDGRIHKGDRV 1407

Query: 70   LAVNNVNVEGATHKQVVELIKSGGDVLSLTV------ISVSPEEAERLEPPDDHSGYQQI 123
            LAVN V++EGATHKQ VE +++ G V+ L +       S   + A    PP D    +Q 
Sbjct: 1408 LAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQVPTSRERDPAGPQSPPPDQDAQRQA 1467

Query: 124  DYTEKRSLPISIPDYSYVNTEDESFVV 150
                 +  P  + DYS+V TED +F V
Sbjct: 1468 PEKVAKQTP-HVKDYSFV-TEDNTFEV 1492

Tyrosine phosphatase which regulates negatively FAS-induced apoptosis and NGFR-mediated pro-apoptotic signaling.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

>sp|Q12923|PTN13_HUMAN Tyrosine-protein phosphatase non-receptor type 13 OS=Homo sapiens GN=PTPN13 PE=1 SV=2

 Score = 70.5 bits (171), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/145 (39%), Positives = 79/145 (54%), Gaps = 15/145 (10%)

Query: 11   EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
            EV++AK+D   G +V G V+   +    +G +Y     V AV+  GAAE  G I KGDR+
Sbjct: 1368 EVELAKNDNSLGISVTGGVNTSVR----HGGIY-----VKAVIPQGAAESDGRIHKGDRV 1418

Query: 70   LAVNNVNVEGATHKQVVELIKSGGDVLSLTV-ISVSPEEAERLE-PPDDHSGYQ--QIDY 125
            LAVN V++EGATHKQ VE +++ G V+ L +    SP   E +   P      Q  Q   
Sbjct: 1419 LAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQSPTSKEHVPVTPQCTLSDQNAQGQG 1478

Query: 126  TEKRSLPISIPDYSYVNTEDESFVV 150
             EK      + DYS+V TE+ +F V
Sbjct: 1479 PEKVKKTTQVKDYSFV-TEENTFEV 1502

Tyrosine phosphatase which regulates negatively FAS-induced apoptosis and NGFR-mediated pro-apoptotic signaling.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

>sp|Q9Z250|LIN7A_RAT Protein lin-7 homolog A OS=Rattus norvegicus GN=Lin7a PE=1 SV=2

 Score = 69.7 bits (169), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 67/111 (60%), Gaps = 14/111 (12%)

Query: 3   STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEK-A 61
           S   + PR V++ K+D G GFNV G             E  +P+ ++S ++ GG AE+  
Sbjct: 100 SEGHSHPRVVELPKTDEGLGFNVMG-----------GKEQNSPI-YISRIIPGGVAERHG 147

Query: 62  GIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLE 112
           G+++GD++L+VN V+VEG  H++ VEL+K+  D + L V+  +P+  E +E
Sbjct: 148 GLKRGDQLLSVNGVSVEGEHHEKAVELLKAAKDSVKL-VVRYTPKVLEEME 197

Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells. Forms membrane-associated multiprotein complexes that may regulate delivery and recycling of proteins to the correct membrane domains. The tripartite complex composed of LIN7 (LIN7A, LIN7B or LIN7C), CASK and APBA1 may have the potential to couple synaptic vesicle exocytosis to cell adhesion in brain. Ensures the proper localization of GRIN2B (subunit 2B of the NMDA receptor) to neuronal postsynaptic density and may function in localizing synaptic vesicles at synapses where it is recruited by beta-catenin and cadherin. Required to localize Kir2 channels, GABA transporter (SLC6A12) and EGFR/ERBB1, ERBB2, ERBB3 and ERBB4 to the basolateral membrane of epithelial cells.

Rattus norvegicus (taxid: 10116)

>sp|Q8JZS0|LIN7A_MOUSE Protein lin-7 homolog A OS=Mus musculus GN=Lin7a PE=1 SV=2

 Score = 69.7 bits (169), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 67/111 (60%), Gaps = 14/111 (12%)

Query: 3   STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEK-A 61
           S   + PR V++ K+D G GFNV G             E  +P+ ++S ++ GG AE+  
Sbjct: 100 SEGHSHPRVVELPKTDEGLGFNVMG-----------GKEQNSPI-YISRIIPGGVAERHG 147

Query: 62  GIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLE 112
           G+++GD++L+VN V+VEG  H++ VEL+K+  D + L V+  +P+  E +E
Sbjct: 148 GLKRGDQLLSVNGVSVEGEHHEKAVELLKAAKDSVKL-VVRYTPKVLEEME 197

Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells. Forms membrane-associated multiprotein complexes that may regulate delivery and recycling of proteins to the correct membrane domains. The tripartite complex composed of LIN7 (LIN7A, LIN7B or LIN7C), CASK and APBA1 may have the potential to couple synaptic vesicle exocytosis to cell adhesion in brain. Ensures the proper localization of GRIN2B (subunit 2B of the NMDA receptor) to neuronal postsynaptic density and may function in localizing synaptic vesicles at synapses where it is recruited by beta-catenin and cadherin. Required to localize Kir2 channels, GABA transporter (SLC6A12) and EGFR/ERBB1, ERBB2, ERBB3 and ERBB4 to the basolateral membrane of epithelial cells.

Mus musculus (taxid: 10090)

>sp|O14910|LIN7A_HUMAN Protein lin-7 homolog A OS=Homo sapiens GN=LIN7A PE=1 SV=2

 Score = 69.7 bits (169), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 67/111 (60%), Gaps = 14/111 (12%)

Query: 3   STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEK-A 61
           S   + PR V++ K+D G GFNV G             E  +P+ ++S ++ GG AE+  
Sbjct: 100 SEGHSHPRVVELPKTDEGLGFNVMG-----------GKEQNSPI-YISRIIPGGVAERHG 147

Query: 62  GIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLE 112
           G+++GD++L+VN V+VEG  H++ VEL+K+  D + L V+  +P+  E +E
Sbjct: 148 GLKRGDQLLSVNGVSVEGEHHEKAVELLKAAKDSVKL-VVRYTPKVLEEME 197

Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells. Forms membrane-associated multiprotein complexes that may regulate delivery and recycling of proteins to the correct membrane domains. The tripartite complex composed of LIN7 (LIN7A, LIN7B or LIN7C), CASK and APBA1 may have the potential to couple synaptic vesicle exocytosis to cell adhesion in brain. Ensures the proper localization of GRIN2B (subunit 2B of the NMDA receptor) to neuronal postsynaptic density and may function in localizing synaptic vesicles at synapses where it is recruited by beta-catenin and cadherin. Required to localize Kir2 channels, GABA transporter (SLC6A12) and EGFR/ERBB1, ERBB2, ERBB3 and ERBB4 to the basolateral membrane of epithelial cells.

Homo sapiens (taxid: 9606)

>sp|Q32LM6|LIN7A_BOVIN Protein lin-7 homolog A OS=Bos taurus GN=LIN7A PE=2 SV=1

 Score = 69.7 bits (169), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 67/111 (60%), Gaps = 14/111 (12%)

Query: 3   STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEK-A 61
           S   + PR V++ K+D G GFNV G             E  +P+ ++S ++ GG AE+  
Sbjct: 100 SEGHSHPRVVELPKTDEGLGFNVMG-----------GKEQNSPI-YISRIIPGGVAERHG 147

Query: 62  GIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLE 112
           G+++GD++L+VN V+VEG  H++ VEL+K+  D + L V+  +P+  E +E
Sbjct: 148 GLKRGDQLLSVNGVSVEGEHHEKAVELLKAAKDSVKL-VVRYTPKVLEEME 197

Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells. Forms membrane-associated multiprotein complexes that may regulate delivery and recycling of proteins to the correct membrane domains. The tripartite complex composed of LIN7 (LIN7A, LIN7B or LIN7C), CASK and APBA1 may have the potential to couple synaptic vesicle exocytosis to cell adhesion in brain. Ensures the proper localization of GRIN2B (subunit 2B of the NMDA receptor) to neuronal postsynaptic density and may function in localizing synaptic vesicles at synapses where it is recruited by beta-catenin and cadherin. Required to localize Kir2 channels, GABA transporter (SLC6A12) and EGFR/ERBB1, ERBB2, ERBB3 and ERBB4 to the basolateral membrane of epithelial cells.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	373
242016230	509	Sorting nexin-27, putative [Pediculus hu	0.927	0.679	0.655	1e-135
193603550	495	PREDICTED: sorting nexin-27-like isoform	0.935	0.705	0.628	1e-134
91078172	506	PREDICTED: similar to sorting nexin [Tri	0.914	0.673	0.650	1e-133
156537462	532	PREDICTED: sorting nexin-27-like [Nasoni	0.908	0.637	0.644	1e-130
383855970	530	PREDICTED: sorting nexin-27-like [Megach	0.908	0.639	0.644	1e-129
332029282	537	Sorting nexin-27 [Acromyrmex echinatior]	0.908	0.631	0.644	1e-129
307173214	537	Sorting nexin-27 [Camponotus floridanus]	0.908	0.631	0.641	1e-128
347965326	526	AGAP001110-PA [Anopheles gambiae str. PE	0.919	0.652	0.634	1e-128
157110114	506	sorting nexin [Aedes aegypti] gi|1088788	0.919	0.677	0.634	1e-128
195131923	503	GI14707 [Drosophila mojavensis] gi|19390	0.927	0.687	0.619	1e-127

>gi|242016230|ref|XP_002428732.1| Sorting nexin-27, putative [Pediculus humanus corporis] gi|212513417|gb|EEB15994.1| Sorting nexin-27, putative [Pediculus humanus corporis]

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 251/383 (65%), Positives = 297/383 (77%), Gaps = 37/383 (9%)

Query: 4   TQQT--GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA 61
           T+QT  GPR V I K++TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVL GGAAEKA
Sbjct: 17  TKQTPLGPRAVTIYKTETGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLGGGAAEKA 76

Query: 62  GIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQ 121
           GIRKGDRIL VN  +VEGATHKQVVELIKSGGDVL+LTVISV+P+EAERLEP DD   Y 
Sbjct: 77  GIRKGDRILEVNGASVEGATHKQVVELIKSGGDVLTLTVISVTPQEAERLEPSDDAPTYA 136

Query: 122 QIDYTEKRSLPISIPDYSYVNTEDESFVVFNIYMAGRHLCSRR----------------- 164
            IDY+EKRSLPISIPDY Y+    + +VVFNIYMAGRHLCSRR                 
Sbjct: 137 CIDYSEKRSLPISIPDYHYLERGGDRYVVFNIYMAGRHLCSRRYREFSNLHTQLKRDFQG 196

Query: 165 -------------LTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDALDENGTNI 211
                        L+EQQLDSRRRGLE YLEKVCAVRVIAES+ +QEFLTD+  ++    
Sbjct: 197 FSFPKLPGKWPFVLSEQQLDSRRRGLEQYLEKVCAVRVIAESDAVQEFLTDSDVQDNV-- 254

Query: 212 SSPVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFER 271
            SPVD+K+LLPD+E++TV++ KSA A+EVY + + K+ + S +S+ YFYLFEIVEY+FER
Sbjct: 255 -SPVDLKVLLPDQEIVTVTIYKSANAEEVYKAVIGKIGM-SVNSSKYFYLFEIVEYNFER 312

Query: 272 KLEAKEFPHHLYIQNYSTASATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDR 331
           KL   E+PH+LYIQNYSTAS+TCL IRKW+F+   E SL  +DD V +++FW  ID V+R
Sbjct: 313 KLLPNEYPHNLYIQNYSTASSTCLAIRKWIFTLSKELSL-KHDDLVTSYIFWQTIDEVNR 371

Query: 332 GQIRAEDRLYELKALQDASRKHE 354
           G I A+DRLY+LKALQD+SRK+E
Sbjct: 372 GHIIAKDRLYQLKALQDSSRKNE 394

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193603550|ref|XP_001949290.1| PREDICTED: sorting nexin-27-like isoform 1 [Acyrthosiphon pisum]

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 240/382 (62%), Positives = 289/382 (75%), Gaps = 33/382 (8%)

Query: 1   MYSTQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEK 60
           M S    GPREV I KS TGFGFNVRGQVSEGGQL+SING+LYAPLQHVSAVL GGAA  
Sbjct: 1   MSSKVPAGPREVTITKSITGFGFNVRGQVSEGGQLKSINGQLYAPLQHVSAVLEGGAAYD 60

Query: 61  AGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGY 120
           AGIRKGDRIL VNNVNVEG+THKQVV+LIKSGGDVL+LTVISV+P+EAERLEP +D S Y
Sbjct: 61  AGIRKGDRILEVNNVNVEGSTHKQVVDLIKSGGDVLTLTVISVTPQEAERLEPSEDQSVY 120

Query: 121 QQIDYTEKRSLPISIPDYSYVNTEDESFVVFNIYMAGRHLCSRR---------------- 164
             IDY++KRSLPIS+PDY  V+ + + +VVFNIYMAGRHLCS+R                
Sbjct: 121 NYIDYSDKRSLPISVPDYHTVDKDGDKYVVFNIYMAGRHLCSKRYSEFANLHANLKREFI 180

Query: 165 --------------LTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDALDENGTN 210
                         L+EQQLDSRRRGLE+YLEKVCAVRVIAE E+MQ+FL D+   N  N
Sbjct: 181 GYSFPKLPGKWPFTLSEQQLDSRRRGLELYLEKVCAVRVIAECEIMQDFLADS--GNIQN 238

Query: 211 ISSPVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFE 270
           I S VD+KI+LPDRE++ +  +K+ATAD VY S + K+ + + ++A YFYLFEIVEY+FE
Sbjct: 239 IDSIVDLKIILPDREIVVIRTKKNATADSVYNSVIDKIQM-AENTAVYFYLFEIVEYNFE 297

Query: 271 RKLEAKEFPHHLYIQNYSTASATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVD 330
           RK++  E  H LY+QNY TASA+CLCI++WLF+  +E  L+ +D+  ATF+FW  ID VD
Sbjct: 298 RKIQPNEVAHQLYVQNYRTASASCLCIKRWLFNPAVETRLIESDNLAATFIFWSTIDEVD 357

Query: 331 RGQIRAEDRLYELKALQDASRK 352
           R  I   DRLYELKALQD+S+K
Sbjct: 358 RNHIIVGDRLYELKALQDSSKK 379

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91078172|ref|XP_967060.1| PREDICTED: similar to sorting nexin [Tribolium castaneum] gi|270001364|gb|EEZ97811.1| hypothetical protein TcasGA2_TC000177 [Tribolium castaneum]

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 246/378 (65%), Positives = 289/378 (76%), Gaps = 37/378 (9%)

Query: 7   TGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKG 66
            GPR V I K++TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVL  GAAE+AGIRKG
Sbjct: 21  NGPRVVTINKTETGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLDRGAAEQAGIRKG 80

Query: 67  DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQQIDYT 126
           DRIL VN VNVEGATHKQVV+LIKSGGDVL+LTVISV+ +EAERLEP DD+  Y   DY+
Sbjct: 81  DRILEVNGVNVEGATHKQVVDLIKSGGDVLTLTVISVTQQEAERLEPTDDNQVY--YDYS 138

Query: 127 EKRSLPISIPDYSYVNTEDESFVVFNIYMAGRHLCSRR---------------------- 164
           EKRSLPISIPDY Y     E +V FNIYMAGRHLCSRR                      
Sbjct: 139 EKRSLPISIPDYHYNERGGERYVAFNIYMAGRHLCSRRYREFSKLHVDLKKEFIGFTFPK 198

Query: 165 --------LTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDALDENGTNISSPVD 216
                   L+EQQLD+RRRGLE YLE+VCAVRVIAES++MQEFLTD  D+N    SSPVD
Sbjct: 199 LPGKWPFNLSEQQLDARRRGLEQYLERVCAVRVIAESDIMQEFLTDQDDDNN---SSPVD 255

Query: 217 IKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAK 276
           +K+LLPDREV+TVS++KSA ADEVY + V K+ +    S  YFYLFEIVEY+FERKL+  
Sbjct: 256 LKVLLPDREVVTVSLKKSANADEVYEAVVKKIGMNKRVS-KYFYLFEIVEYNFERKLQPT 314

Query: 277 EFPHHLYIQNYSTASATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRA 336
           E+PH+LYIQNYSTA++TCLC+RKWLFS   E +L+ ND +  +++FW ++D V+RG I A
Sbjct: 315 EYPHNLYIQNYSTATSTCLCVRKWLFSLSKELTLM-NDTQATSYIFWQSVDEVNRGYINA 373

Query: 337 EDRLYELKALQDASRKHE 354
            +RLY+LKALQD +R  E
Sbjct: 374 GERLYQLKALQDNTRASE 391

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156537462|ref|XP_001607126.1| PREDICTED: sorting nexin-27-like [Nasonia vitripennis]

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 243/377 (64%), Positives = 289/377 (76%), Gaps = 38/377 (10%)

Query: 8   GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGD 67
           GPR V I K++TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVL+ GAAEKAG+RKGD
Sbjct: 48  GPRCVTIYKTETGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLSHGAAEKAGVRKGD 107

Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQQIDYTE 127
           RIL VNNVNVEGATHKQVV+LIKSGGDVL+LTVISV+P+EAERLEP +D S Y  +DY+E
Sbjct: 108 RILEVNNVNVEGATHKQVVDLIKSGGDVLTLTVISVTPQEAERLEPCEDLS-YASVDYSE 166

Query: 128 KRSLPISIPDYSYVNTEDESFVVFNIYMAGRHLCSRR----------------------- 164
           KRSLPIS+PDY     + E +VVFN++MAGRHLCSRR                       
Sbjct: 167 KRSLPISVPDYHVRERKHERYVVFNVHMAGRHLCSRRYREFAALHLALKKEFIGFNFPKL 226

Query: 165 -------LTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDALDENGTNISSPVDI 217
                  L+EQQLD+RRRGLE YLEKVCAVRVIAES+ MQEFLTD L+E+G      VD+
Sbjct: 227 PGKWPFQLSEQQLDARRRGLEQYLEKVCAVRVIAESDAMQEFLTDRLEEDGDQ-GPAVDL 285

Query: 218 KILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKE 277
           K+LLPDREV+TV+V K+A+A +VY +   ++ L + +S  YFYLFEIVEY+FERKL+  E
Sbjct: 286 KVLLPDREVVTVTVPKAASAKDVYEAVCCRVGLDTETSK-YFYLFEIVEYNFERKLQPHE 344

Query: 278 FPHHLYIQNYSTASATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRAE 337
            PH LYIQNYSTASATCL IR+WLF+  + R L    ++  T++FW  +D V+RG I A 
Sbjct: 345 HPHTLYIQNYSTASATCLSIRRWLFN--ISRPL---SEQALTWIFWQTVDEVNRGHITAG 399

Query: 338 DRLYELKALQDASRKHE 354
           +RLY+LKALQDASRKHE
Sbjct: 400 ERLYQLKALQDASRKHE 416

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855970|ref|XP_003703483.1| PREDICTED: sorting nexin-27-like [Megachile rotundata]

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 243/377 (64%), Positives = 286/377 (75%), Gaps = 38/377 (10%)

Query: 8   GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGD 67
           GPR V I K++TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVL  GAAEKAG+RKGD
Sbjct: 46  GPRCVTIYKTETGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPRGAAEKAGVRKGD 105

Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQQIDYTE 127
           RIL VNNVNVEGATHKQVV+LIKSGGDVL+LTVISV+P+EAERLEP +D S Y  +DY+E
Sbjct: 106 RILEVNNVNVEGATHKQVVDLIKSGGDVLTLTVISVTPQEAERLEPFEDLS-YASVDYSE 164

Query: 128 KRSLPISIPDYSYVNTEDESFVVFNIYMAGRHLCSRR----------------------- 164
           KRSLPIS+PDY     + E +VVFN++MAGRHLCSRR                       
Sbjct: 165 KRSLPISVPDYHVRERKHERYVVFNVHMAGRHLCSRRYREFAALHMALKKEFIGFNFPKL 224

Query: 165 -------LTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDALDENGTNISSPVDI 217
                  L+EQQLD+RRRGLE YLEKVCAVRVIAES+ MQEFLTD LDE+G      VD+
Sbjct: 225 PGKWPFQLSEQQLDARRRGLEQYLEKVCAVRVIAESDAMQEFLTDRLDEDGDQ-GPAVDL 283

Query: 218 KILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKE 277
           K+LLPDREV+TV+V K+A+  +VY +   ++ L +  +A YFYLFEIVEY+FERKL+  E
Sbjct: 284 KVLLPDREVVTVTVAKAASVKDVYDAVCSRVGLDA-ETAKYFYLFEIVEYNFERKLQPHE 342

Query: 278 FPHHLYIQNYSTASATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRAE 337
            PH LYIQNYSTASATCL IR+WLF+  + R L    +   T++FW  +D V+RG I A 
Sbjct: 343 HPHTLYIQNYSTASATCLAIRRWLFN--VNRPL---SEHALTWIFWQTVDEVNRGHITAG 397

Query: 338 DRLYELKALQDASRKHE 354
           +RLY+LKALQDASRKHE
Sbjct: 398 ERLYQLKALQDASRKHE 414

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332029282|gb|EGI69265.1| Sorting nexin-27 [Acromyrmex echinatior]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 243/377 (64%), Positives = 287/377 (76%), Gaps = 38/377 (10%)

Query: 8   GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGD 67
           GPR V I K++TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVL  GAAEKAG+RKGD
Sbjct: 53  GPRCVTIYKTETGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPRGAAEKAGVRKGD 112

Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQQIDYTE 127
           RIL VNNVNVEGATHKQVV+LIKSGGDVL+LTVISV+P+EAERLEP +D S Y  +DY+E
Sbjct: 113 RILEVNNVNVEGATHKQVVDLIKSGGDVLTLTVISVTPQEAERLEPCEDLS-YASVDYSE 171

Query: 128 KRSLPISIPDYSYVNTEDESFVVFNIYMAGRHLCSRR----------------------- 164
           KRSLPIS+PDY     + E +VVFN++MAGRHLCSRR                       
Sbjct: 172 KRSLPISVPDYHVRERKHERYVVFNVHMAGRHLCSRRYREFAALHMALKKEFIGFNFPKL 231

Query: 165 -------LTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDALDENGTNISSPVDI 217
                  L+EQQLD+RRRGLE YLEKVCAVRVIAES+ MQEFLTD L+E+G      VD+
Sbjct: 232 PGKWPFQLSEQQLDARRRGLEQYLEKVCAVRVIAESDAMQEFLTDRLEEDGDQ-GPAVDL 290

Query: 218 KILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKE 277
           K+LLPDREV+TV+V K+A+  +VY +   ++ L +  +A YFYLFEIVEY+FERKL+  E
Sbjct: 291 KVLLPDREVVTVTVPKAASVKDVYDAVCCRVGLDA-ETAKYFYLFEIVEYNFERKLQPHE 349

Query: 278 FPHHLYIQNYSTASATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRAE 337
            PH LYIQNYSTASATCL IR+WLF+  + R L    ++  T++FW  ID V+RG I A 
Sbjct: 350 HPHTLYIQNYSTASATCLAIRRWLFT--VNRPL---SEQALTWIFWQTIDEVNRGHITAG 404

Query: 338 DRLYELKALQDASRKHE 354
           +RLY+LKALQDASRKHE
Sbjct: 405 ERLYQLKALQDASRKHE 421

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307173214|gb|EFN64276.1| Sorting nexin-27 [Camponotus floridanus]

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 242/377 (64%), Positives = 287/377 (76%), Gaps = 38/377 (10%)

Query: 8   GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGD 67
           GPR V I K++TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVL  GAAEKAG+RKGD
Sbjct: 53  GPRCVTIYKTETGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPRGAAEKAGVRKGD 112

Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQQIDYTE 127
           RIL VNNV+VEGATHKQVV+LIKSGGDVL+LTVISV+P+EAERLEP +D S Y  +DY+E
Sbjct: 113 RILEVNNVSVEGATHKQVVDLIKSGGDVLTLTVISVTPQEAERLEPCEDLS-YASVDYSE 171

Query: 128 KRSLPISIPDYSYVNTEDESFVVFNIYMAGRHLCSRR----------------------- 164
           KRSLPIS+PDY     + E +VVFN++MAGRHLCSRR                       
Sbjct: 172 KRSLPISVPDYHVRERKHERYVVFNVHMAGRHLCSRRYREFAALHMALKKEFIGFNFPKL 231

Query: 165 -------LTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDALDENGTNISSPVDI 217
                  L+EQQLD+RRRGLE YLEKVCAVRVIAES+ MQEFLTD L+E+G      VD+
Sbjct: 232 PGKWPFQLSEQQLDARRRGLEQYLEKVCAVRVIAESDAMQEFLTDRLEEDGDQ-GPAVDL 290

Query: 218 KILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKE 277
           K+LLPDREV+TV+V K+A+  +VY +   ++ L +  +A YFYLFEIVEY+FERKL+  E
Sbjct: 291 KVLLPDREVVTVTVPKAASVKDVYDAVCSRVGLDA-ETAKYFYLFEIVEYNFERKLQPHE 349

Query: 278 FPHHLYIQNYSTASATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRAE 337
            PH LYIQNYSTASATCL IR+WLF+  + R L    ++  T++FW  ID V+RG I A 
Sbjct: 350 HPHTLYIQNYSTASATCLAIRRWLFN--VNRPL---SEQALTWIFWQTIDEVNRGHITAG 404

Query: 338 DRLYELKALQDASRKHE 354
           +RLY+LKALQDASRKHE
Sbjct: 405 ERLYQLKALQDASRKHE 421

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347965326|ref|XP_551739.3| AGAP001110-PA [Anopheles gambiae str. PEST] gi|347965328|ref|XP_003435749.1| AGAP001110-PB [Anopheles gambiae str. PEST] gi|333470562|gb|EAL38656.3| AGAP001110-PA [Anopheles gambiae str. PEST] gi|333470563|gb|EGK97664.1| AGAP001110-PB [Anopheles gambiae str. PEST]

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 240/378 (63%), Positives = 283/378 (74%), Gaps = 35/378 (9%)

Query: 7   TGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKG 66
            GPR V I K++TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVL  GAAE+AGI+KG
Sbjct: 39  NGPRVVTIYKTETGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLDNGAAEQAGIKKG 98

Query: 67  DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQQIDYT 126
           DRIL VN+VNVEGATHKQVV+LIKSGGD L+LTVISV+ +EAERLEP +D  GY  IDY+
Sbjct: 99  DRILEVNHVNVEGATHKQVVDLIKSGGDTLTLTVISVTQQEAERLEPTEDPGGYSYIDYS 158

Query: 127 EKRSLPISIPDYSYVNTEDESFVVFNIYMAGRHLCSRR---------------------- 164
           EKRSLPISIPDY+ ++  +E +VVFNI+MAGR LCSRR                      
Sbjct: 159 EKRSLPISIPDYNIIHRGNERYVVFNIHMAGRQLCSRRYREFSNLHQQLKKEFSGFSFPK 218

Query: 165 --------LTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDALDENGTNISSPVD 216
                   L EQQLD+RRRGLE YLEKVCAVRVIAES+ +QEFLTD +D+     +SPVD
Sbjct: 219 MPGKWPFQLNEQQLDARRRGLEQYLEKVCAVRVIAESDAVQEFLTDTVDDLA---ASPVD 275

Query: 217 IKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAK 276
           IKI+LPD  V+TVSVRKSA A  V+   V +  L S  +  YFYLFEIVEY+FERKL+  
Sbjct: 276 IKIMLPDHAVVTVSVRKSANAQLVWEQLVQRANLTS-YTQQYFYLFEIVEYNFERKLQPH 334

Query: 277 EFPHHLYIQNYSTASATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRA 336
           E PH LY+QNYSTAS+TCLC+R+WLFS   E SL A  ++ A F+F+ A+D V+R  IRA
Sbjct: 335 EIPHQLYVQNYSTASSTCLCVRRWLFSIEREMSLPAG-EQAAKFIFYQAVDEVNRSNIRA 393

Query: 337 EDRLYELKALQDASRKHE 354
           + RLYELKALQD+ +  E
Sbjct: 394 DGRLYELKALQDSKKADE 411

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157110114|ref|XP_001650959.1| sorting nexin [Aedes aegypti] gi|108878813|gb|EAT43038.1| AAEL005484-PA [Aedes aegypti]

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 240/378 (63%), Positives = 282/378 (74%), Gaps = 35/378 (9%)

Query: 7   TGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKG 66
            GPR V I K++TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVL  GAAE AGI+KG
Sbjct: 19  NGPRVVTIHKTETGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLDNGAAELAGIKKG 78

Query: 67  DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQQIDYT 126
           DRIL VN+VNVEGATHKQVV+LIKSGGD L+LTVISV+ +EAERLEP DD  GY  IDY+
Sbjct: 79  DRILEVNHVNVEGATHKQVVDLIKSGGDTLTLTVISVTQQEAERLEPTDDPGGYSYIDYS 138

Query: 127 EKRSLPISIPDYSYVNTEDESFVVFNIYMAGRHLCSRR---------------------- 164
           EKRSLPISIPDY+ ++   E FVVFNI+MAGR LCSRR                      
Sbjct: 139 EKRSLPISIPDYNIIHRGSERFVVFNIHMAGRQLCSRRYREFSNLHQVLKKEFTGFNFPK 198

Query: 165 --------LTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDALDENGTNISSPVD 216
                   L+EQQLD+RRRGLE YLEKVCAVRVIAES+ +QEFLTD+ D+     +SPVD
Sbjct: 199 LPGKWPFQLSEQQLDARRRGLEQYLEKVCAVRVIAESDAVQEFLTDSEDDIA---ASPVD 255

Query: 217 IKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAK 276
           IKI+LPD  V+TVSVRKSA A  V+   V +  L S  +  YFYLFEIVEY+FERKL+  
Sbjct: 256 IKIMLPDHNVVTVSVRKSANAQLVWEQLVQRASLTS-YTQQYFYLFEIVEYNFERKLQPH 314

Query: 277 EFPHHLYIQNYSTASATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRA 336
           E PH LY+QNYSTAS+TCLC+R+WLFS   E +L    ++ A ++F+ A+D V+RG IRA
Sbjct: 315 EIPHQLYVQNYSTASSTCLCVRRWLFSIEREMTL-PTGEQAAKYIFYQAVDEVNRGNIRA 373

Query: 337 EDRLYELKALQDASRKHE 354
           + RLYELKALQD+ +  E
Sbjct: 374 DGRLYELKALQDSKKADE 391

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195131923|ref|XP_002010393.1| GI14707 [Drosophila mojavensis] gi|193908843|gb|EDW07710.1| GI14707 [Drosophila mojavensis]

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 236/381 (61%), Positives = 285/381 (74%), Gaps = 35/381 (9%)

Query: 4   TQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGI 63
           T   GPR V I K++TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVL  GAAEKAGI
Sbjct: 13  TAANGPRVVTIYKTETGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLENGAAEKAGI 72

Query: 64  RKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQQI 123
           +KGDRIL VN V+VEGATHKQVV+LIKSGGD L+LTVISV+ +EA+RLEP +D +GY  I
Sbjct: 73  KKGDRILEVNGVSVEGATHKQVVDLIKSGGDCLTLTVISVTQQEADRLEPQEDQTGYSYI 132

Query: 124 DYTEKRSLPISIPDYSYVNTEDESFVVFNIYMAGRHLCSRR------------------- 164
           DY++KRSLPISIPDYS VN   E ++VFNI+MAGR LCSRR                   
Sbjct: 133 DYSDKRSLPISIPDYSIVNRNGERYIVFNIHMAGRQLCSRRYREFANLHSALRKEFSGFN 192

Query: 165 -----------LTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDALDENGTNISS 213
                      L+EQQLD+RRRGLE YLEKVCAVRVIAES+ +Q+FLTD  D+     +S
Sbjct: 193 FPKLPGKWLFQLSEQQLDTRRRGLEQYLEKVCAVRVIAESDAVQDFLTDTEDDIS---AS 249

Query: 214 PVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKL 273
           PVDIK++LPD EV +VSV+KS+ A  V+   V +  L +  +  YFYLFEIVEY+FERKL
Sbjct: 250 PVDIKVMLPDHEVTSVSVKKSSNAQVVWEILVQRANL-TAYTQQYFYLFEIVEYNFERKL 308

Query: 274 EAKEFPHHLYIQNYSTASATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQ 333
           +  E PH LY+QNYSTAS+TCLC+R+WLFS   E +L  + ++ A F+F+ A+D V+RG 
Sbjct: 309 QPHEIPHQLYVQNYSTASSTCLCVRRWLFSVSKELTL-PDGEQAARFIFYQAVDEVNRGN 367

Query: 334 IRAEDRLYELKALQDASRKHE 354
           IRAE RLYELKALQDA + ++
Sbjct: 368 IRAEGRLYELKALQDAKKAND 388

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	373
FB|FBgn0052758	531	CG32758 [Drosophila melanogast	0.439	0.308	0.756	1.8e-118
UNIPROTKB|H9KYY4	494	SNX27 "Uncharacterized protein	0.428	0.323	0.693	1.2e-102
UNIPROTKB|H9L3I2	560	SNX27 "Uncharacterized protein	0.428	0.285	0.693	1.2e-102
UNIPROTKB|Q96L92	541	SNX27 "Sorting nexin-27" [Homo	0.428	0.295	0.687	2e-102
UNIPROTKB|A5PKA5	541	SNX27 "Sorting nexin-27" [Bos	0.428	0.295	0.687	2.5e-102
MGI|MGI:1923992	539	Snx27 "sorting nexin family me	0.428	0.296	0.687	2.5e-102
UNIPROTKB|F1ST14	541	SNX27 "Uncharacterized protein	0.428	0.295	0.687	3.2e-102
RGD|628705	539	Snx27 "sorting nexin family me	0.428	0.296	0.687	3.2e-102
UNIPROTKB|Q8K4V4	539	Snx27 "Sorting nexin-27" [Ratt	0.428	0.296	0.687	3.2e-102
UNIPROTKB|E2RM53	542	SNX27 "Uncharacterized protein	0.428	0.295	0.687	5.2e-102

FB|FBgn0052758 CG32758 [Drosophila melanogaster (taxid:7227)]

 Score = 632 (227.5 bits), Expect = 1.8e-118, Sum P(2) = 1.8e-118
 Identities = 124/164 (75%), Positives = 139/164 (84%)

Query:     4 TQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGI 63
             T   GPR V I K++TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVL  GAAEKAGI
Sbjct:    41 TTANGPRVVTIYKTETGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLENGAAEKAGI 100

Query:    64 RKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQQI 123
             +KGDRIL VN V+VEGATHKQVV+LIKSGGD L+LTVISV+ +EA+RLEP +D SGY  I
Sbjct:   101 KKGDRILEVNGVSVEGATHKQVVDLIKSGGDCLTLTVISVTQQEADRLEPQEDQSGYSYI 160

Query:   124 DYTEKRSLPISIPDYSYVNTEDESFVVFNIYMAGRHLCSRRLTE 167
             DY++KRSLPISIPDY  VN   E ++VFNI+MAGR LCSRR  E
Sbjct:   161 DYSDKRSLPISIPDYGIVNRNGERYIVFNIHMAGRQLCSRRYRE 204

GO:0007165 "signal transduction" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA

UNIPROTKB|H9KYY4 SNX27 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 578 (208.5 bits), Expect = 1.2e-102, Sum P(2) = 1.2e-102
 Identities = 111/160 (69%), Positives = 131/160 (81%)

Query:     8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGD 67
             GPR V+I KS++G+GFNVRGQVSEGGQLRSINGELYAPLQHVSAVL GGAA++AG+RKGD
Sbjct:    28 GPRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLGGGAADRAGVRKGD 87

Query:    68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQQIDYTE 127
             RIL VN VNVEGATHKQVV+LI++G   L LTV+SV P EA+ L+P DD  G    DYTE
Sbjct:    88 RILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTE 147

Query:   128 KRSLPISIPDYSYVNTEDESFVVFNIYMAGRHLCSRRLTE 167
             K+++PISIP Y +V    E FVV+N+YMAGR LCS+R  E
Sbjct:   148 KQAVPISIPTYKHVEQNGEKFVVYNVYMAGRQLCSKRYRE 187

GO:0007165 "signal transduction" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0008333 "endosome to lysosome transport" evidence=IEA

UNIPROTKB|H9L3I2 SNX27 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 578 (208.5 bits), Expect = 1.2e-102, Sum P(2) = 1.2e-102
 Identities = 111/160 (69%), Positives = 131/160 (81%)

Query:     8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGD 67
             GPR V+I KS++G+GFNVRGQVSEGGQLRSINGELYAPLQHVSAVL GGAA++AG+RKGD
Sbjct:    28 GPRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLGGGAADRAGVRKGD 87

Query:    68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQQIDYTE 127
             RIL VN VNVEGATHKQVV+LI++G   L LTV+SV P EA+ L+P DD  G    DYTE
Sbjct:    88 RILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTE 147

Query:   128 KRSLPISIPDYSYVNTEDESFVVFNIYMAGRHLCSRRLTE 167
             K+++PISIP Y +V    E FVV+N+YMAGR LCS+R  E
Sbjct:   148 KQAVPISIPTYKHVEQNGEKFVVYNVYMAGRQLCSKRYRE 187

GO:0007165 "signal transduction" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0008333 "endosome to lysosome transport" evidence=IEA

UNIPROTKB|Q96L92 SNX27 "Sorting nexin-27" [Homo sapiens (taxid:9606)]

 Score = 576 (207.8 bits), Expect = 2.0e-102, Sum P(2) = 2.0e-102
 Identities = 110/160 (68%), Positives = 132/160 (82%)

Query:     8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGD 67
             GPR V+I KS++G+GFNVRGQVSEGGQLRSINGELYAPLQHVSAVL GGAA++AG+RKGD
Sbjct:    40 GPRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGD 99

Query:    68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQQIDYTE 127
             RIL VN+VNVEGATHKQVV+LI++G   L LTV+SV P EA+ L+P DD  G    DYTE
Sbjct:   100 RILEVNHVNVEGATHKQVVDLIRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTE 159

Query:   128 KRSLPISIPDYSYVNTEDESFVVFNIYMAGRHLCSRRLTE 167
             K+++PIS+P Y +V    E FVV+N+YMAGR LCS+R  E
Sbjct:   160 KQAVPISVPRYKHVEQNGEKFVVYNVYMAGRQLCSKRYRE 199

GO:0007165 "signal transduction" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0008333 "endosome to lysosome transport" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|A5PKA5 SNX27 "Sorting nexin-27" [Bos taurus (taxid:9913)]

 Score = 576 (207.8 bits), Expect = 2.5e-102, Sum P(2) = 2.5e-102
 Identities = 110/160 (68%), Positives = 131/160 (81%)

Query:     8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGD 67
             GPR V+I KS++G+GFNVRGQVSEGGQLRSINGELYAPLQHVSAVL GGAA++AG+RKGD
Sbjct:    40 GPRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGD 99

Query:    68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQQIDYTE 127
             RIL VN VNVEGATHKQVV+LI++G   L LTV+SV P EA+ L+P DD  G    DYTE
Sbjct:   100 RILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTE 159

Query:   128 KRSLPISIPDYSYVNTEDESFVVFNIYMAGRHLCSRRLTE 167
             K+++PIS+P Y +V    E FVV+N+YMAGR LCS+R  E
Sbjct:   160 KQAVPISVPTYKHVEQNGEKFVVYNVYMAGRQLCSKRYRE 199

GO:0005829 "cytosol" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0008333 "endosome to lysosome transport" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

MGI|MGI:1923992 Snx27 "sorting nexin family member 27" [Mus musculus (taxid:10090)]

 Score = 576 (207.8 bits), Expect = 2.5e-102, Sum P(2) = 2.5e-102
 Identities = 110/160 (68%), Positives = 131/160 (81%)

Query:     8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGD 67
             GPR V+I KS++G+GFNVRGQVSEGGQLRSINGELYAPLQHVSAVL GGAA++AG+RKGD
Sbjct:    38 GPRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGD 97

Query:    68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQQIDYTE 127
             RIL VN VNVEGATHKQVV+LI++G   L LTV+SV P EA+ L+P DD  G    DYTE
Sbjct:    98 RILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTE 157

Query:   128 KRSLPISIPDYSYVNTEDESFVVFNIYMAGRHLCSRRLTE 167
             K+++PIS+P Y +V    E FVV+N+YMAGR LCS+R  E
Sbjct:   158 KQAVPISVPTYKHVEQNGEKFVVYNVYMAGRQLCSKRYRE 197

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005769 "early endosome" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0007154 "cell communication" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008333 "endosome to lysosome transport" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0016197 "endosomal transport" evidence=IMP

GO:0035091 "phosphatidylinositol binding" evidence=IEA

UNIPROTKB|F1ST14 SNX27 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 576 (207.8 bits), Expect = 3.2e-102, Sum P(2) = 3.2e-102
 Identities = 110/160 (68%), Positives = 131/160 (81%)

Query:     8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGD 67
             GPR V+I KS++G+GFNVRGQVSEGGQLRSINGELYAPLQHVSAVL GGAA++AG+RKGD
Sbjct:    40 GPRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGD 99

Query:    68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQQIDYTE 127
             RIL VN VNVEGATHKQVV+LI++G   L LTV+SV P EA+ L+P DD  G    DYTE
Sbjct:   100 RILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTE 159

Query:   128 KRSLPISIPDYSYVNTEDESFVVFNIYMAGRHLCSRRLTE 167
             K+++PIS+P Y +V    E FVV+N+YMAGR LCS+R  E
Sbjct:   160 KQAVPISVPTYKHVEQNGEKFVVYNVYMAGRQLCSKRYRE 199

GO:0008333 "endosome to lysosome transport" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

RGD|628705 Snx27 "sorting nexin family member 27" [Rattus norvegicus (taxid:10116)]

 Score = 576 (207.8 bits), Expect = 3.2e-102, Sum P(2) = 3.2e-102
 Identities = 110/160 (68%), Positives = 131/160 (81%)

Query:     8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGD 67
             GPR V+I KS++G+GFNVRGQVSEGGQLRSINGELYAPLQHVSAVL GGAA++AG+RKGD
Sbjct:    38 GPRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGD 97

Query:    68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQQIDYTE 127
             RIL VN VNVEGATHKQVV+LI++G   L LTV+SV P EA+ L+P DD  G    DYTE
Sbjct:    98 RILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTE 157

Query:   128 KRSLPISIPDYSYVNTEDESFVVFNIYMAGRHLCSRRLTE 167
             K+++PIS+P Y +V    E FVV+N+YMAGR LCS+R  E
Sbjct:   158 KQAVPISVPTYKHVEQNGEKFVVYNVYMAGRQLCSKRYRE 197

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005769 "early endosome" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007399 "nervous system development" evidence=NAS

GO:0015031 "protein transport" evidence=IEA

GO:0016197 "endosomal transport" evidence=ISO

GO:0035091 "phosphatidylinositol binding" evidence=IEA

GO:0042493 "response to drug" evidence=IEP

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|Q8K4V4 Snx27 "Sorting nexin-27" [Rattus norvegicus (taxid:10116)]

 Score = 576 (207.8 bits), Expect = 3.2e-102, Sum P(2) = 3.2e-102
 Identities = 110/160 (68%), Positives = 131/160 (81%)

Query:     8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGD 67
             GPR V+I KS++G+GFNVRGQVSEGGQLRSINGELYAPLQHVSAVL GGAA++AG+RKGD
Sbjct:    38 GPRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGD 97

Query:    68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQQIDYTE 127
             RIL VN VNVEGATHKQVV+LI++G   L LTV+SV P EA+ L+P DD  G    DYTE
Sbjct:    98 RILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTE 157

Query:   128 KRSLPISIPDYSYVNTEDESFVVFNIYMAGRHLCSRRLTE 167
             K+++PIS+P Y +V    E FVV+N+YMAGR LCS+R  E
Sbjct:   158 KQAVPISVPTYKHVEQNGEKFVVYNVYMAGRQLCSKRYRE 197

GO:0007165 "signal transduction" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA

UNIPROTKB|E2RM53 SNX27 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 576 (207.8 bits), Expect = 5.2e-102, Sum P(2) = 5.2e-102
 Identities = 110/160 (68%), Positives = 131/160 (81%)

Query:     8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGD 67
             GPR V+I KS++G+GFNVRGQVSEGGQLRSINGELYAPLQHVSAVL GGAA++AG+RKGD
Sbjct:    41 GPRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGD 100

Query:    68 RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQQIDYTE 127
             RIL VN VNVEGATHKQVV+LI++G   L LTV+SV P EA+ L+P DD  G    DYTE
Sbjct:   101 RILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSVPPHEADNLDPSDDSLGQSFYDYTE 160

Query:   128 KRSLPISIPDYSYVNTEDESFVVFNIYMAGRHLCSRRLTE 167
             K+++PIS+P Y +V    E FVV+N+YMAGR LCS+R  E
Sbjct:   161 KQAVPISVPTYKHVEQNGEKFVVYNVYMAGRQLCSKRYRE 200

GO:0008333 "endosome to lysosome transport" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8K4V4	SNX27_RAT	No assigned EC number	0.5365	0.8954	0.6196	yes	N/A
A5PKA5	SNX27_BOVIN	No assigned EC number	0.5365	0.8954	0.6173	yes	N/A
Q3UHD6	SNX27_MOUSE	No assigned EC number	0.5294	0.9088	0.6289	yes	N/A
Q96L92	SNX27_HUMAN	No assigned EC number	0.5392	0.8954	0.6173	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	373
cd01777	87	cd01777, SNX27_RA, Ubiquitin domain of SNX27 (sort	1e-34
cd06886	106	cd06886, PX_SNX27, The phosphoinositide binding Ph	2e-34
cd00992	82	cd00992, PDZ_signaling, PDZ domain found in a vari	2e-23
smart00228	85	smart00228, PDZ, Domain present in PSD-95, Dlg, an	7e-22
pfam00595	80	pfam00595, PDZ, PDZ domain (Also known as DHR or G	4e-15
cd00136	70	cd00136, PDZ, PDZ domain, also called DHR (Dlg hom	1e-12
cd00988	85	cd00988, PDZ_CTP_protease, PDZ domain of C-termina	1e-09
cd01768	87	cd01768, RA, RA (Ras-associating) ubiquitin domain	1e-09
cd00987	90	cd00987, PDZ_serine_protease, PDZ domain of tryspi	5e-09
cd00989	79	cd00989, PDZ_metalloprotease, PDZ domain of bacter	1e-08
pfam00788	87	pfam00788, RA, Ras association (RalGDS/AF-6) domai	1e-07
TIGR00225	334	TIGR00225, prc, C-terminal peptidase (prc)	2e-07
cd06093	106	cd06093, PX_domain, The Phox Homology domain, a ph	1e-05
COG0793	406	COG0793, Prc, Periplasmic protease [Cell envelope	1e-05
cd06885	104	cd06885, PX_SNX17_31, The phosphoinositide binding	2e-05
pfam00787	109	pfam00787, PX, PX domain	3e-05
TIGR02037	428	TIGR02037, degP_htrA_DO, periplasmic serine protea	2e-04
pfam13180	81	pfam13180, PDZ_2, PDZ domain	3e-04
COG0265	347	COG0265, DegQ, Trypsin-like serine proteases, typi	8e-04
TIGR02037	428	TIGR02037, degP_htrA_DO, periplasmic serine protea	9e-04
TIGR02860	402	TIGR02860, spore_IV_B, stage IV sporulation protei	0.001
cd00990	80	cd00990, PDZ_glycyl_aminopeptidase, PDZ domain ass	0.002
PLN00049	389	PLN00049, PLN00049, carboxyl-terminal processing p	0.003
cd06880	110	cd06880, PX_SNX22, The phosphoinositide binding Ph	0.004
PRK10898	353	PRK10898, PRK10898, serine endoprotease; Provision	0.004

>gnl|CDD|176372 cd01777, SNX27_RA, Ubiquitin domain of SNX27 (sorting nexin protein 27)

 Score =  122 bits (307), Expect = 1e-34
 Identities = 44/88 (50%), Positives = 60/88 (68%), Gaps = 2/88 (2%)

Query: 214 PVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKL 273
            V+++I LPD+  +TV VRK+AT D+VY + V K  + S  +  YF LFE++ +SF RKL
Sbjct: 1   DVELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDS-YTQNYFALFEVINHSFVRKL 59

Query: 274 EAKEFPHHLYIQNYSTA-SATCLCIRKW 300
              EFPH LY+QNY++A   TCL  RKW
Sbjct: 60  APNEFPHKLYVQNYTSAVPGTCLTARKW 87

SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain. Length = 87

>gnl|CDD|132796 cd06886, PX_SNX27, The phosphoinositide binding Phox Homology domain of Sorting Nexin 27

 Score =  122 bits (308), Expect = 2e-34
 Identities = 55/105 (52%), Positives = 66/105 (62%), Gaps = 30/105 (28%)

Query: 128 KRSLPISIPDYSYVNTEDESFVVFNIYMAGRHLCSRR----------------------- 164
           KRS+PISIPDY +V    E FVV+NIYMAGR LCSRR                       
Sbjct: 1   KRSVPISIPDYKHVEQNGEKFVVYNIYMAGRQLCSRRYREFANLHQNLKKEFPDFQFPKL 60

Query: 165 -------LTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTD 202
                  L+EQQLD+RRRGLE YLEKVC++RVI ES++MQ+FL+D
Sbjct: 61  PGKWPFSLSEQQLDARRRGLEQYLEKVCSIRVIGESDIMQDFLSD 105

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX27 contains an N-terminal PDZ domain followed by a PX domain and a Ras-Associated (RA) domain. It binds G protein-gated potassium (Kir3) channels, which play a role in neuronal excitability control, through its PDZ domain. SNX27 downregulates Kir3 channels by promoting their movement in the endosome, reducing surface expression and increasing degradation. SNX27 also associates with 5-hydroxytryptamine type 4 receptor (5-HT4R), cytohesin associated scaffolding protein (CASP), and diacylglycerol kinase zeta, and may play a role in their intracellular trafficking and endocytic recycling. The SNX27 PX domain preferentially binds to phosphatidylinositol-3-phosphate (PI3P) and is important for targeting to the early endosome. Length = 106

>gnl|CDD|238492 cd00992, PDZ_signaling, PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

 Score = 92.2 bits (230), Expect = 2e-23
 Identities = 40/94 (42%), Positives = 53/94 (56%), Gaps = 13/94 (13%)

Query: 9   PREVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGD 67
            R V + K    G GF++RG            G+       VS V  GG AE+ G+R GD
Sbjct: 1   VRTVTLRKDPGGGLGFSLRG------------GKDSGGGIFVSRVEPGGPAERGGLRVGD 48

Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
           RIL VN V+VEG TH++ VEL+K+ GD ++LTV 
Sbjct: 49  RILEVNGVSVEGLTHEEAVELLKNSGDEVTLTVR 82

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Length = 82

>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2

 Score = 88.2 bits (219), Expect = 7e-22
 Identities = 38/93 (40%), Positives = 53/93 (56%), Gaps = 12/93 (12%)

Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
           PR V++ K   G GF++ G   EGG +             VS+V+ G  A KAG+R GD 
Sbjct: 2   PRLVELEKGGGGLGFSLVGGKDEGGGVV------------VSSVVPGSPAAKAGLRVGDV 49

Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
           IL VN  +VEG TH + V+L+K  G  ++LTV+
Sbjct: 50  ILEVNGTSVEGLTHLEAVDLLKKAGGKVTLTVL 82

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Length = 85

>gnl|CDD|201332 pfam00595, PDZ, PDZ domain (Also known as DHR or GLGF)

 Score = 69.6 bits (171), Expect = 4e-15
 Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 12/82 (14%)

Query: 20  GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEG 79
           G GF++ G          I          VS VL GGAAE  G+++GDRIL++N  ++E 
Sbjct: 11  GLGFSLVG---GSDGDPGI---------FVSEVLPGGAAEAGGLQEGDRILSINGQDLEN 58

Query: 80  ATHKQVVELIKSGGDVLSLTVI 101
            +H + V  +K  G  ++LT++
Sbjct: 59  LSHDEAVLALKGSGGEVTLTIL 80

PDZ domains are found in diverse signaling proteins. Length = 80

>gnl|CDD|238080 cd00136, PDZ, PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

 Score = 62.3 bits (152), Expect = 1e-12
 Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 49  VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIK-SGGDVLSLTVI 101
           V +V  G  AE+AG++ GD ILAVN  +V+  T + V EL+K   G+ ++LTV 
Sbjct: 17  VLSVEPGSPAERAGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTVR 70

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(post synaptic density protein), DlgA (Drosophila disc large tumor suppressor), and ZO1, a mammalian tight junction protein. Length = 70

>gnl|CDD|238488 cd00988, PDZ_CTP_protease, PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

 Score = 54.2 bits (131), Expect = 1e-09
 Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 2/64 (3%)

Query: 49  VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEA 108
           +++VL G  A KAGI+ GD I+A++   V+G + + VV+L++  G   +   +++   + 
Sbjct: 17  ITSVLPGSPAAKAGIKAGDIIVAIDGEPVDGLSLEDVVKLLR--GKAGTKVRLTLKRGDG 74

Query: 109 ERLE 112
           E  E
Sbjct: 75  EPRE 78

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 85

>gnl|CDD|176363 cd01768, RA, RA (Ras-associating) ubiquitin domain

 Score = 54.2 bits (131), Expect = 1e-09
 Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 3/74 (4%)

Query: 228 TVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEY-SFERKLEAKEFPHHLYIQN 286
           T+ V K  TA +V    + K  L        + L E++     ER L   E P  + +  
Sbjct: 16  TLRVSKDTTAQDVIQQLLKKFGLDD--DPEDYALVEVLGDGGLERLLLPDECPLQIQLNA 73

Query: 287 YSTASATCLCIRKW 300
                     +RK 
Sbjct: 74  PRQREDLRFLLRKR 87

The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon. Length = 87

>gnl|CDD|238487 cd00987, PDZ_serine_protease, PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

 Score = 52.6 bits (127), Expect = 5e-09
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)

Query: 49  VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVI 101
           V++V  G  A KAG++ GD ILAVN   V+      +   +     GD ++LTV+
Sbjct: 28  VASVDPGSPAAKAGLKPGDVILAVNGKPVKSVA--DLRRALAELKPGDKVTLTVL 80

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 90

>gnl|CDD|238489 cd00989, PDZ_metalloprotease, PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

 Score = 51.5 bits (124), Expect = 1e-08
 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 3/53 (5%)

Query: 49  VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELI-KSGGDVLSLTV 100
           +  V+ G  A KAG++ GDRILA+N   ++      +V+ + ++ G  L+LTV
Sbjct: 16  IGEVVPGSPAAKAGLKAGDRILAINGQKIKSWE--DLVDAVQENPGKPLTLTV 66

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 79

>gnl|CDD|201444 pfam00788, RA, Ras association (RalGDS/AF-6) domain

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 3/73 (4%)

Query: 228 TVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQNY 287
           T+ V  + TA EV  +A+ K  L        + L  +     ER L   E P  + +Q  
Sbjct: 16  TILVSSTTTAQEVIRAALKKFGL--ADDPEDYVLVVLERGGEERVLPDDEKPLQIQLQLP 73

Query: 288 STASATCLCIRKW 300
             AS +   +R+ 
Sbjct: 74  GDAS-SRFLLRRR 85

RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Recent evidence (not yet in MEDLINE) shows that some RA domains do NOT bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Length = 87

>gnl|CDD|232883 TIGR00225, prc, C-terminal peptidase (prc)

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 6/103 (5%)

Query: 49  VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSG-GDVLSLTVISVSPEE 107
           + +   G  AEKAGI+ GD+I+ +N  +V G +    V LI+   G  +SL ++     +
Sbjct: 66  IVSPFEGSPAEKAGIKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAGKSK 125

Query: 108 A-----ERLEPPDDHSGYQQIDYTEKRSLPISIPDYSYVNTED 145
                 +R                 K    I I  +S   TED
Sbjct: 126 PLTFTLKRDRIELQTVKASVKKVGGKSVGYIRISSFSEHTTED 168

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database [Protein fate, Degradation of proteins, peptides, and glycopeptides, Protein fate, Protein modification and repair]. Length = 334

>gnl|CDD|132768 cd06093, PX_domain, The Phox Homology domain, a phosphoinositide binding module

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 35/104 (33%)

Query: 133 ISIPDYSYVNTEDESFVVFNIYM----AGRHLCSRR------------------------ 164
           +SIPDY  V    + +VV+ I +           RR                        
Sbjct: 2   VSIPDYEKVKDGGKKYVVYIIEVTTQGGEEWTVYRRYSDFEELHEKLKKKFPGVILPPLP 61

Query: 165 -------LTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT 201
                  L  + ++ RR+ LE YL+ +     +  SE ++EFL 
Sbjct: 62  PKKLFGNLDPEFIEERRKQLEQYLQSLLNHPELRNSEELKEFLE 105

The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to membranes. Proteins containing PX domains interact with PIs and have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. Many members of this superfamily bind phosphatidylinositol-3-phosphate (PI3P) but in some cases, other PIs such as PI4P or PI(3,4)P2, among others, are the preferred substrates. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction, as in the cases of p40phox, p47phox, and some sorting nexins (SNXs). The PX domain is conserved from yeast to humans and is found in more than 100 proteins. The majority of PX domain-containing proteins are SNXs, which play important roles in endosomal sorting. Length = 106

>gnl|CDD|223864 COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 49  VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEA 108
           V + + G  A KAGI+ GD I+ ++  +V G +  + V+LI+  G   +   +++     
Sbjct: 116 VVSPIDGSPAAKAGIKPGDVIIKIDGKSVGGVSLDEAVKLIR--GKPGTKVTLTILRAGG 173

Query: 109 ER 110
            +
Sbjct: 174 GK 175

Length = 406

>gnl|CDD|132795 cd06885, PX_SNX17_31, The phosphoinositide binding Phox Homology domain of Sorting Nexins 17 and 31

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 27/99 (27%), Positives = 37/99 (37%), Gaps = 31/99 (31%)

Query: 133 ISIPD-YSYVNTEDESFVVFNIYMAGRHLCSRR--------------------------- 164
            SIPD     +    ++V +NI++ G   CS R                           
Sbjct: 2   FSIPDTQELSDEGGSTYVAYNIHINGVLHCSVRYSQLHGLNEQLKKEFGNRKLPPFPPKK 61

Query: 165 ---LTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFL 200
              LT  QL+ RR  LE YL+ V     IA S++   FL
Sbjct: 62  LLPLTPAQLEERRLQLEKYLQAVVQDPRIANSDIFNSFL 100

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Members of this subfamily include sorting nexin 17 (SNX17), SNX31, and similar proteins. They contain an N-terminal PX domain followed by a truncated FERM (4.1, ezrin, radixin, and moesin) domain and a unique C-terminal region. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX17 is known to regulate the trafficking and processing of a number of proteins. It binds some members of the low-density lipoprotein receptor (LDLR) family such as LDLR, VLDLR, ApoER2, and others, regulating their endocytosis. It also binds P-selectin and may regulate its lysosomal degradation. SNX17 is highly expressed in neurons. It binds amyloid precursor protein (APP) and may be involved in its intracellular trafficking and processing to amyloid beta peptide, which plays a central role in the pathogenesis of Alzheimer's disease. The biological function of SNX31 is unknown. Length = 104

>gnl|CDD|216119 pfam00787, PX, PX domain

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 14/39 (35%), Positives = 26/39 (66%)

Query: 163 RRLTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT 201
            R +E+ ++ RR+GLE YL+++     ++ SE++ EFL 
Sbjct: 69  GRFSEEFIEKRRKGLEEYLQRLLQHPELSNSEVVLEFLE 107

PX domains bind to phosphoinositides. Length = 109

>gnl|CDD|233695 TIGR02037, degP_htrA_DO, periplasmic serine protease, Do/DeqQ family

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 28/103 (27%), Positives = 36/103 (34%), Gaps = 32/103 (31%)

Query: 49  VSAVLAGGAAEKAGIRKGDRILAVNNVNVE-------------------------GATHK 83
           V+ VL G  AEKAG++ GD I +VN   +                          G    
Sbjct: 261 VAQVLPGSPAEKAGLKAGDVITSVNGKPISSFADLRRAIGTLKPGKKVTLGILRKGKEKT 320

Query: 84  QVVEL-------IKSGGDVLSLTVISVSPEEAERLEPPDDHSG 119
             V L         S    L LTV ++SPE  + L    D  G
Sbjct: 321 ITVTLGASPEEQASSSNPFLGLTVANLSPEIRKELRLKGDVKG 363

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 428

>gnl|CDD|221961 pfam13180, PDZ_2, PDZ domain

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 4/55 (7%)

Query: 49  VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSG--GDVLSLTVI 101
           V +V  G  A KAG++ GD IL+++   V   +  +++E+I +G  GD + LTV 
Sbjct: 17  VVSVKEGSPAAKAGLKPGDIILSIDGKKVN--SLTELIEVILNGKPGDTVKLTVY 69

Length = 81

>gnl|CDD|223343 COG0265, DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

 Score = 40.6 bits (95), Expect = 8e-04
 Identities = 19/53 (35%), Positives = 25/53 (47%)

Query: 49  VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
           V  VL G  A KAGI+ GD I AVN   V   +           GD ++L ++
Sbjct: 274 VLGVLPGSPAAKAGIKAGDIITAVNGKPVASLSDLVAAVASNRPGDEVALKLL 326

Length = 347

>gnl|CDD|233695 TIGR02037, degP_htrA_DO, periplasmic serine protease, Do/DeqQ family

 Score = 40.7 bits (96), Expect = 9e-04
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 49  VSAVLAGGAAEKAGIRKGDRILAVNNVNVE-GATHKQVVELIKSGGDVL 96
           V+ V++G  A +AG++ GD IL+VN   V   A  ++V+   K GG V 
Sbjct: 366 VTKVVSGSPAARAGLQPGDVILSVNQQPVSSVAELRKVLARAKKGGRVA 414

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 428

>gnl|CDD|234035 TIGR02860, spore_IV_B, stage IV sporulation protein B

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 3/44 (6%)

Query: 58  AEKAGIRKGDRILAVNNVNVEGATHKQVVELI-KSGGDVLSLTV 100
            E+AGI+ GDRIL +N   ++      +  LI K+GG+ L+LT+
Sbjct: 126 GEEAGIQIGDRILKINGEKIKNMDD--LANLINKAGGEKLTLTI 167

SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else [Cellular processes, Sporulation and germination]. Length = 402

>gnl|CDD|238490 cd00990, PDZ_glycyl_aminopeptidase, PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

 Score = 36.3 bits (84), Expect = 0.002
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 8/65 (12%)

Query: 49  VSAVLAGGAAEKAGIRKGDRILAVN-------NVNVEGATHKQVVEL-IKSGGDVLSLTV 100
           V+ V     A+KAG+  GD ++AVN          ++       VEL +     ++ + +
Sbjct: 16  VTFVRDDSPADKAGLVAGDELVAVNGWRVDALQDRLKEYQAGDPVELTVFRDDRLIEVPL 75

Query: 101 ISVSP 105
               P
Sbjct: 76  TLADP 80

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 80

>gnl|CDD|177681 PLN00049, PLN00049, carboxyl-terminal processing protease; Provisional

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 17/102 (16%)

Query: 40  GELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQV-----------VEL 88
               A L  V+    GG A +AGIR GD ILA++  + EG +  +            VEL
Sbjct: 98  DGPPAGLVVVAPA-PGGPAARAGIRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVEL 156

Query: 89  -IKSGGDVLSLTV----ISVSPEEAERLEPPDDHSGYQQIDY 125
            ++ G +   +T+    +S++P ++   E P   +G  +I Y
Sbjct: 157 TLRRGPETRLVTLTREKVSLNPVKSRLCEVPGPGAGSPKIGY 198

Length = 389

>gnl|CDD|132790 cd06880, PX_SNX22, The phosphoinositide binding Phox Homology domain of Sorting Nexin 22

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 36/100 (36%)

Query: 133 ISIPDYSYVNTEDE-SFVVF--NIYMAGR-HLCSRRLTEQQ------------------- 169
           +SIP Y     E E  + VF   + + GR H   +R +E                     
Sbjct: 3   VSIPSYRLEVDESEKPYTVFTIEVLVNGRRHTVEKRYSEFHALHKKLKKSIKTPDFPPKR 62

Query: 170 --------LDSRRRGLEIYLEKVCAVRVIAESELMQEFLT 201
                   L+ RR+GLE YL+      ++  +EL ++ L 
Sbjct: 63  VRNWNPKVLEQRRQGLEAYLQG-----LLKINELPKQLLD 97

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX22 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. The biological function of SNX22 is not yet known. Length = 110

>gnl|CDD|182820 PRK10898, PRK10898, serine endoprotease; Provisional

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 18/82 (21%)

Query: 24  NVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGA--T 81
            +  Q     QL+ I          V+ V   G A KAGI+  D I++VNN     A  T
Sbjct: 267 PLHAQGGGIDQLQGIV---------VNEVSPDGPAAKAGIQVNDLIISVNNKPAISALET 317

Query: 82  HKQVVELIKSGGDVLSLTVISV 103
             QV E I+ G      +VI V
Sbjct: 318 MDQVAE-IRPG------SVIPV 332

Length = 353

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	373
KOG3784|consensus	407		100.0
KOG3552|consensus	1298		99.93
cd01777	87	SNX27_RA Ubiquitin domain of SNX27 (sorting nexin	99.92
PRK10779	449	zinc metallopeptidase RseP; Provisional	99.89
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	99.87
PF00595	81	PDZ: PDZ domain (Also known as DHR or GLGF) Coordi	99.36
smart00295	207	B41 Band 4.1 homologues. Also known as ezrin/radix	99.2
cd00992	82	PDZ_signaling PDZ domain found in a variety of Eum	99.08
KOG3550|consensus	207		99.02
COG0750	375	Predicted membrane-associated Zn-dependent proteas	99.0
cd00136	70	PDZ PDZ domain, also called DHR (Dlg homologous re	98.98
PF13180	82	PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_	98.96
KOG3209|consensus	984		98.92
smart00228	85	PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Als	98.92
KOG3209|consensus	984		98.9
KOG3549|consensus	505		98.9
cd00988	85	PDZ_CTP_protease PDZ domain of C-terminal processi	98.71
cd00991	79	PDZ_archaeal_metalloprotease PDZ domain of archaea	98.66
cd00989	79	PDZ_metalloprotease PDZ domain of bacterial and pl	98.66
cd06886	106	PX_SNX27 The phosphoinositide binding Phox Homolog	98.44
KOG3651|consensus	429		98.44
cd00990	80	PDZ_glycyl_aminopeptidase PDZ domain associated wi	98.44
KOG3551|consensus	506		98.39
cd00986	79	PDZ_LON_protease PDZ domain of ATP-dependent LON s	98.38
cd00987	90	PDZ_serine_protease PDZ domain of tryspin-like ser	98.38
PRK10139	455	serine endoprotease; Provisional	98.37
KOG3553|consensus	124		98.34
PLN00049	389	carboxyl-terminal processing protease; Provisional	98.17
KOG3580|consensus	1027		98.16
TIGR00225	334	prc C-terminal peptidase (prc). A C-terminal pepti	98.14
PRK10779	449	zinc metallopeptidase RseP; Provisional	98.07
PF04495	138	GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro:	98.05
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	98.04
PRK10942	473	serine endoprotease; Provisional	98.04
KOG1892|consensus	1629		98.04
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	98.03
TIGR01713	259	typeII_sec_gspC general secretion pathway protein	97.98
COG0793	406	Prc Periplasmic protease [Cell envelope biogenesis	97.97
PRK10139	455	serine endoprotease; Provisional	97.96
KOG3605|consensus	829		97.92
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	97.88
PRK10898	353	serine endoprotease; Provisional	97.87
TIGR02860	402	spore_IV_B stage IV sporulation protein B. SpoIVB,	97.86
PRK10942	473	serine endoprotease; Provisional	97.84
TIGR03279	433	cyano_FeS_chp putative FeS-containing Cyanobacteri	97.82
KOG3606|consensus	358		97.82
PRK11186	667	carboxy-terminal protease; Provisional	97.77
cd06885	104	PX_SNX17_31 The phosphoinositide binding Phox Homo	97.76
KOG3580|consensus	1027		97.68
KOG3129|consensus	231		97.68
KOG0606|consensus	1205		97.56
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	97.53
KOG3571|consensus	626		97.52
KOG3542|consensus	1283		97.49
cd01768	87	RA RA (Ras-associating) ubiquitin domain. The RA (	97.28
KOG0609|consensus	542		96.91
PF00373	126	FERM_M: FERM central domain; InterPro: IPR019748 T	96.91
smart00314	90	RA Ras association (RalGDS/AF-6) domain. RasGTP ef	96.89
KOG3938|consensus	334		96.89
KOG3605|consensus	829		96.88
PF00788	93	RA: Ras association (RalGDS/AF-6) domain; InterPro	96.84
COG0265	347	DegQ Trypsin-like serine proteases, typically peri	96.77
PF14685	88	Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6	96.73
cd06862	125	PX_SNX9_18_like The phosphoinositide binding Phox	96.64
COG3480	342	SdrC Predicted secreted protein containing a PDZ d	96.49
cd07301	112	PX_SNX21 The phosphoinositide binding Phox Homolog	96.42
cd07279	112	PX_SNX20_21_like The phosphoinositide binding Phox	96.38
KOG3530|consensus	616		96.31
cd07300	114	PX_SNX20 The phosphoinositide binding Phox Homolog	96.31
cd06867	112	PX_SNX41_42 The phosphoinositide binding Phox Homo	96.29
cd06870	109	PX_CISK The phosphoinositide binding Phox Homology	95.89
cd06877	119	PX_SNX14 The phosphoinositide binding Phox Homolog	95.75
PRK09681	276	putative type II secretion protein GspC; Provision	95.71
COG3975	558	Predicted protease with the C-terminal PDZ domain	95.53
PF09379	80	FERM_N: FERM N-terminal domain ; InterPro: IPR0189	95.46
cd06872	107	PX_SNX19_like_plant The phosphoinositide binding P	95.42
cd07280	120	PX_YPT35 The phosphoinositide binding Phox Homolog	95.41
cd06861	112	PX_Vps5p The phosphoinositide binding Phox Homolog	95.36
COG3031	275	PulC Type II secretory pathway, component PulC [In	95.17
KOG3532|consensus	1051		95.0
cd06866	105	PX_SNX8_Mvp1p_like The phosphoinositide binding Ph	94.99
cd01787	85	GRB7_RA RA (RAS-associated like) domain of Grb7. G	94.77
cd06893	132	PX_SNX19 The phosphoinositide binding Phox Homolog	94.72
cd01784	87	rasfadin_RA Ubiquitin-like domain of Rasfadin. ras	94.52
KOG1421|consensus	955		94.43
KOG1320|consensus	473		94.41
cd07281	124	PX_SNX1 The phosphoinositide binding Phox Homology	94.38
cd06873	120	PX_SNX13 The phosphoinositide binding Phox Homolog	94.34
cd06898	113	PX_SNX10 The phosphoinositide binding Phox Homolog	94.22
cd06879	138	PX_UP1_plant The phosphoinositide binding Phox Hom	94.17
cd07295	116	PX_Grd19 The phosphoinositide binding Phox Homolog	94.05
cd06864	129	PX_SNX4 The phosphoinositide binding Phox Homology	93.92
cd06868	120	PX_HS1BP3 The phosphoinositide binding Phox Homolo	93.84
cd07286	127	PX_SNX18 The phosphoinositide binding Phox Homolog	93.77
cd06163	182	S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (	93.75
cd06878	127	PX_SNX25 The phosphoinositide binding Phox Homolog	93.72
cd06881	117	PX_SNX15_like The phosphoinositide binding Phox Ho	93.68
cd07282	124	PX_SNX2 The phosphoinositide binding Phox Homology	93.31
PF12812	78	PDZ_1: PDZ-like domain	93.19
cd06897	108	PX_SNARE The phosphoinositide binding Phox Homolog	93.14
cd01782	112	AF6_RA_repeat1 Ubiquitin domain of AT-6, first rep	93.0
cd07293	123	PX_SNX3 The phosphoinositide binding Phox Homology	92.67
cd01778	96	RASSF1_RA Ubiquitin-like domain of RASSF1 tumour s	92.55
cd06865	120	PX_SNX_like The phosphoinositide binding Phox Homo	92.33
cd06860	116	PX_SNX7_30_like The phosphoinositide binding Phox	92.24
KOG2527|consensus	144		92.21
cd07288	118	PX_SNX15 The phosphoinositide binding Phox Homolog	92.16
KOG4407|consensus	1973		92.0
cd07285	126	PX_SNX9 The phosphoinositide binding Phox Homology	91.99
cd06863	118	PX_Atg24p The phosphoinositide binding Phox Homolo	91.68
cd07287	118	PX_RPK118_like The phosphoinositide binding Phox H	91.56
cd07276	110	PX_SNX16 The phosphoinositide binding Phox Homolog	91.5
cd07283	116	PX_SNX30 The phosphoinositide binding Phox Homolog	91.39
cd07294	132	PX_SNX12 The phosphoinositide binding Phox Homolog	91.37
cd06869	119	PX_UP2_fungi The phosphoinositide binding Phox Hom	91.26
cd06894	123	PX_SNX3_like The phosphoinositide binding Phox Hom	90.91
cd06871	120	PX_MONaKA The phosphoinositide binding Phox Homolo	90.9
smart00455	70	RBD Raf-like Ras-binding domain.	90.74
cd07284	116	PX_SNX7 The phosphoinositide binding Phox Homology	90.68
cd06859	114	PX_SNX1_2_like The phosphoinositide binding Phox H	90.62
KOG1738|consensus	638		90.57
cd06876	133	PX_MDM1p The phosphoinositide binding Phox Homolog	90.31
cd06880	110	PX_SNX22 The phosphoinositide binding Phox Homolog	90.14
smart00312	105	PX PhoX homologous domain, present in p47phox and	90.12
PF02196	71	RBD: Raf-like Ras-binding domain; InterPro: IPR003	89.88
cd06875	116	PX_IRAS The phosphoinositide binding Phox Homology	89.73
KOG3834|consensus	462		89.23
cd01760	72	RBD Ubiquitin-like domain of RBD-like S/T kinases.	88.96
KOG3834|consensus	462		88.74
KOG4257|consensus	974		88.47
PF00787	113	PX: PX domain; InterPro: IPR001683 The PX (phox) d	85.8
cd06891	140	PX_Vps17p The phosphoinositide binding Phox Homolo	85.75
cd01781	100	AF6_RA_repeat2 Ubiquitin domain of AT-6, second re	84.72
cd06883	109	PX_PI3K_C2 The phosphoinositide binding Phox Homol	84.71
cd01817	73	RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS	84.2
cd06882	123	PX_p40phox The phosphoinositide binding Phox Homol	83.65
cd07277	118	PX_RUN The phosphoinositide binding Phox Homology	80.43

>KOG3784|consensus

Probab=100.00  E-value=4.3e-44  Score=340.19  Aligned_cols=208  Identities=37%  Similarity=0.537  Sum_probs=194.4

Q ss_pred             cccceeeeeeehhhhcccccc------------------------------cchhHHHHHhhcHHHHHHHHhchhhhhhh
Q psy2827         144 EDESFVVFNIYMAGRHLCSRR------------------------------LTEQQLDSRRRGLEIYLEKVCAVRVIAES  193 (373)
Q Consensus       144 ~~~~~~~~~i~~~g~l~~~~r------------------------------l~i~q~~~rr~gl~~yl~~v~~~~~i~~s  193 (373)
                      ....|++||||++|.+||+.|                              ++..++++||+++++|++++|+++.+++|
T Consensus        13 ~~~~ytaynih~nG~~~~~~r~s~~~~l~~~lr~~~~~~~~p~~p~k~~f~L~~~~~~~rr~~leqylqa~~q~~~l~~s   92 (407)
T KOG3784|consen   13 SLERYTAYNIHINGRQHGSVRYSQLVELHEQLKKHFYDYCLPQFPPKKLFKLTPQQLDSRRRGLEQYLQAVCQDPVLARS   92 (407)
T ss_pred             CcccccceeeeecceeEEEEehHHHHhHHHHHHHHhhcccCCCCCcccccCCChhhhHHHHHHHHHHHHHHhcCccccch
Confidence            567899999999999999998                              89999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccCCCCCccceEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeecc-----c
Q psy2827         194 ELMQEFLTDALDENGTNISSPVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEY-----S  268 (373)
Q Consensus       194 ~~~~~FL~~~~s~~~~~~~~~l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~-----~  268 (373)
                      +.++.||... +.     ...+.+.++||||..++|+++++++++.+++.++.++|| +.+++.||+||+.+..     .
T Consensus        93 ~~~~~fL~~~-q~-----~~~v~l~v~lpng~~i~i~~~~s~tt~~vl~~v~~kl~l-~~e~i~~f~lFlvr~~~~~~ls  165 (407)
T KOG3784|consen   93 ELVQKFLMRA-QP-----MEEVELDVFLPNGEKITINCLVSDTASLVLKSVCRKLGL-PDELIGYFGLFLVRDNDPGNLS  165 (407)
T ss_pred             hhhhHHHHhc-cc-----cceeEEEEEccCCceEEEEEEecccHHHHHHHHHhhcCC-chHhhhheeeeEEeccCCCcce
Confidence            9999999988 44     345899999999999999999999999999999999999 8999999999999986     9


Q ss_pred             eeeccCcCCCCceeeeccccCCCCceEEEEeeccCChhhhhcccCChHHHHHHHHHHHHHHhcCCccch-hhHHHHHHHH
Q psy2827         269 FERKLEAKEFPHHLYIQNYSTASATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRAE-DRLYELKALQ  347 (373)
Q Consensus       269 ~~r~l~~~e~p~~~~~~~~~~~~~~~~~lrk~~~~~~~~~~l~~~d~~a~~~ly~Q~~~dv~~~~~~~~-~~~~~L~~lq  347 (373)
                      ++|||++||+||.+|.++++++..  ++|||||||+..|..|++ +.+|++|||+||++|+++||+.++ +...||++||
T Consensus       166 ~vRkl~~fE~p~vs~t~~~~~~~~--l~LRk~~~ds~~e~~L~d-~~~~v~llY~Qav~D~~~g~~~~~~e~~~QL~slq  242 (407)
T KOG3784|consen  166 FVRKLADFESPYVSLTSNYVSACE--LLLRKWYWDSSRERALMD-NRVAVNLLYVQAVQDIERGWVVPTKEQYDQLKSLQ  242 (407)
T ss_pred             eeeeeccccccccccccccccccc--ceeeeeeecchhhhHHhc-CchHHHHHHHHHHHHHhcCceeechhhHHHHHHHH
Confidence            999999999999988888876522  999999999999999999 999999999999999999999997 4444999999


Q ss_pred             hccchHHhhhhccC
Q psy2827         348 DASRKHEITTGSCN  361 (373)
Q Consensus       348 ~~~~~~~~l~l~~~  361 (373)
                      ++++++|||+||++
T Consensus       243 ~q~~~~~fL~m~R~  256 (407)
T KOG3784|consen  243 EEESMKEFLELART  256 (407)
T ss_pred             HhhhHHHHHHHHHh
Confidence            99999999999984

>KOG3552|consensus

Probab=99.93  E-value=1.9e-26  Score=236.18  Aligned_cols=256  Identities=21%  Similarity=0.316  Sum_probs=177.7

Q ss_pred             CcEEEEEEcCCC-CccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHH
Q psy2827           8 GPREVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVV   86 (373)
Q Consensus         8 ~~r~v~l~r~~~-g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~   86 (373)
                      .||.|.+.|+.. ||||...                 .|. +|..|.+|||+. ..|+|||+|++|||++|++++|+.++
T Consensus        55 ~pr~vq~~r~~~lGFgfvag-----------------rPv-iVr~VT~GGps~-GKL~PGDQIl~vN~Epv~daprervI  115 (1298)
T KOG3552|consen   55 EPRQVQLQRNASLGFGFVAG-----------------RPV-IVRFVTEGGPSI-GKLQPGDQILAVNGEPVKDAPRERVI  115 (1298)
T ss_pred             cchhhhhhccccccceeecC-----------------Cce-EEEEecCCCCcc-ccccCCCeEEEecCcccccccHHHHH
Confidence            388899999875 7887642                 354 689999999998 55999999999999999999999999


Q ss_pred             HHHHhCCCeEEEEEEec--CccccccCCCCCCCCCeeeeeeeecCCCCCCCCccceecccccceeeeeeehhhhcccccc
Q psy2827          87 ELIKSGGDVLSLTVISV--SPEEAERLEPPDDHSGYQQIDYTEKRSLPISIPDYSYVNTEDESFVVFNIYMAGRHLCSRR  164 (373)
Q Consensus        87 ~~i~~~g~~v~l~V~r~--~~~~~~~~~~~~~~~~~~~iGi~~~~~~p~si~~~~~~~~~~~~~~~~~i~~~g~l~~~~r  164 (373)
                      ++++.+...|.++|.+.  -|..++.           ++....+..+..++...    ++.+     .+-++|.-.    
T Consensus       116 dlvRace~sv~ltV~qPc~~p~pKSt-----------flSa~KrArLkSnPvkV----rFaE-----eV~InG~~~----  171 (1298)
T KOG3552|consen  116 DLVRACESSVNLTVCQPCVLPGPKST-----------FLSAGKRARLKSNPVKV----RFAE-----EVCINGAPL----  171 (1298)
T ss_pred             HHHHHHhhhcceEEeccccCCCchhh-----------hhhhhhhhhhccCCcee----eeeh-----hheecCccc----
Confidence            99999999999999873  2222221           22221111111111100    0111     111111110    


Q ss_pred             cchhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHHhcccCCCCCccceEEEEEcCCCceEEEEEEecCCHHHHHHHh
Q psy2827         165 LTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDALDENGTNISSPVDIKILLPDREVITVSVRKSATADEVYASA  244 (373)
Q Consensus       165 l~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~~~s~~~~~~~~~l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~  244 (373)
                                                        |-.   +. +..-.+|..|.+||.||++.++.+.-.+++.+++..+
T Consensus       172 ----------------------------------~~~---sa-lgllcmPNVLKvyLENGQTKsFkfdatTtVkDVIltl  213 (1298)
T KOG3552|consen  172 ----------------------------------FPP---SA-LGLLCMPNVLKVYLENGQTKSFKFDATTTVKDVILTL  213 (1298)
T ss_pred             ----------------------------------CCc---cc-ccceechhHHHHHHhcCccceeeecccccHHHHHHHH
Confidence                                              000   00 1111122357778889999999999999999999999


Q ss_pred             ccccCCCchhhhchhheeeeecccee--ec--cCcCCCCceeeeccccCCCCceEEEEeeccCChhhhhcccCChHHHHH
Q psy2827         245 VPKLYLQSPSSAAYFYLFEIVEYSFE--RK--LEAKEFPHHLYIQNYSTASATCLCIRKWLFSAPLERSLVANDDRVATF  320 (373)
Q Consensus       245 ~~~igl~~~~~l~~f~lf~~~~~~~~--r~--l~~~e~p~~~~~~~~~~~~~~~~~lrk~~~~~~~~~~l~~~d~~a~~~  320 (373)
                      ..++.+   -.+-+|+|.+...+...  |.  |.+-|+--+ .+++..  ++.-.||.+..|.|+++.+|+.|||+||+|
T Consensus       214 ~eKLsi---~~iE~FsL~LE~~~s~~rnkL~LLheqEsl~q-V~~Rp~--sHk~RCLFRItFVPkdp~dLlqrDpvAfeY  287 (1298)
T KOG3552|consen  214 LEKLSI---CCIELFSLVLEHVKSLKRNKLTLLHEQESLAQ-VAARPG--SHKLRCLFRITFVPKDPADLLQRDPVAFEY  287 (1298)
T ss_pred             HHHHhh---hhHHHHHHHHHHHHhcccceeEeecHHHHHHH-HHhCCc--ccceeEEEEEEeccCCHHHHHhcCchHHHH
Confidence            999966   67778888887654443  33  444444332 122222  223366777889999999999999999999


Q ss_pred             HHHHHHHHHhcCCccch---hhHHHHHHHHhcc
Q psy2827         321 MFWMAIDAVDRGQIRAE---DRLYELKALQDAS  350 (373)
Q Consensus       321 ly~Q~~~dv~~~~~~~~---~~~~~L~~lq~~~  350 (373)
                      ||.|+||||++++|.|+   +.+.+|+|||-+.
T Consensus       288 LYlQsCnDV~QERFapElk~elALRLAALhm~~  320 (1298)
T KOG3552|consen  288 LYLQSCNDVNQERFAPELKPELALRLAALHMHQ  320 (1298)
T ss_pred             HHHhhhhhHhHhhcccccchHHHHHHHHHHHHH
Confidence            99999999999999997   8999999998643

>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27)

Probab=99.92  E-value=2.2e-25  Score=170.86  Aligned_cols=86  Identities=50%  Similarity=0.901  Sum_probs=84.0

Q ss_pred             ceEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeeccceeeccCcCCCCceeeeccccCC-CC
Q psy2827         214 PVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQNYSTA-SA  292 (373)
Q Consensus       214 ~l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~~~~r~l~~~e~p~~~~~~~~~~~-~~  292 (373)
                      ++.|.++||||.++++++.+++++++++++++.++|| +.++..||+||++++.+|+|||+|||+||.+|+|||+|+ ++
T Consensus         1 ~V~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L-~~e~~~YFaLFev~~~~f~RKL~dfE~Ph~ly~~ny~sa~~~   79 (87)
T cd01777           1 DVELRIALPDKATVTVRVRKNATTDQVYQALVAKAGM-DSYTQNYFALFEVINHSFVRKLAPNEFPHKLYVQNYTSAVPG   79 (87)
T ss_pred             CeEEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCC-CHHHHhheeeeEEecceEEEeccCccCCceEEEEEeeccCCc
Confidence            3789999999999999999999999999999999999 999999999999999999999999999999999999998 89


Q ss_pred             ceEEEEee
Q psy2827         293 TCLCIRKW  300 (373)
Q Consensus       293 ~~~~lrk~  300 (373)
                      +|+++|||
T Consensus        80 ~cl~~rkw   87 (87)
T cd01777          80 TCLTARKW   87 (87)
T ss_pred             ceEEEecC
Confidence            99999999

SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=99.89  E-value=3.1e-24  Score=217.23  Aligned_cols=231  Identities=18%  Similarity=0.167  Sum_probs=174.2

Q ss_pred             cEEEEEEcCCCCccEEEEecc-------cCCCccccccccccCC--ceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCC
Q psy2827           9 PREVQIAKSDTGFGFNVRGQV-------SEGGQLRSINGELYAP--LQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEG   79 (373)
Q Consensus         9 ~r~v~l~r~~~g~Gfsi~g~~-------~~~~~~~~~g~~~~~p--~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~   79 (373)
                      .-++++.|+++..-.++.-..       ........+|..+..|  .+.|..|.++|||++|||++||+|++|||+++.+
T Consensus       176 ~v~v~v~R~gk~~~~~v~l~~~~~~~~~~~~~~~~~lGl~~~~~~~~~vV~~V~~~SpA~~AGL~~GDvIl~Ing~~V~s  255 (449)
T PRK10779        176 STTITVAPFGSDQRRDKTLDLRHWAFEPDKQDPVSSLGIRPRGPQIEPVLAEVQPNSAASKAGLQAGDRIVKVDGQPLTQ  255 (449)
T ss_pred             ceEEEEEeCCccceEEEEecccccccCccccchhhcccccccCCCcCcEEEeeCCCCHHHHcCCCCCCEEEEECCEEcCC
Confidence            456777787654333322210       0011122345443333  2479999999999999999999999999999998


Q ss_pred             CCHHHHHHHHHh-CCCeEEEEEEecCccccccCCCCC---CCCCeeeeeeeecCC-C--------CCCCC-ccceecccc
Q psy2827          80 ATHKQVVELIKS-GGDVLSLTVISVSPEEAERLEPPD---DHSGYQQIDYTEKRS-L--------PISIP-DYSYVNTED  145 (373)
Q Consensus        80 ~s~~~~~~~i~~-~g~~v~l~V~r~~~~~~~~~~~~~---~~~~~~~iGi~~~~~-~--------p~si~-~~~~~~~~~  145 (373)
                        |+++.+.++. .++.+.+++.|.+......+.+..   .....+.+|+.+... .        +.++. ........+
T Consensus       256 --~~dl~~~l~~~~~~~v~l~v~R~g~~~~~~v~~~~~~~~g~~~~~iGi~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~  333 (449)
T PRK10779        256 --WQTFVTLVRDNPGKPLALEIERQGSPLSLTLTPDSKPGNGKAEGFAGVVPKVIPLPDEYKTVRQYGPFSAIYEATDKT  333 (449)
T ss_pred             --HHHHHHHHHhCCCCEEEEEEEECCEEEEEEEEeeeecCCCceeeEEEEeccccCCcccceeEEecCHHHHHHHHHHHH
Confidence              9999999987 678899999886543322222210   112235688865421 0        11111 133346678


Q ss_pred             cceeeeeeehhhhcccccc--------cchhHH--HHHhhcHHHHHHHHhchhhhhhhHHHHHHHHHhcccCCCCCccce
Q psy2827         146 ESFVVFNIYMAGRHLCSRR--------LTEQQL--DSRRRGLEIYLEKVCAVRVIAESELMQEFLTDALDENGTNISSPV  215 (373)
Q Consensus       146 ~~~~~~~i~~~g~l~~~~r--------l~i~q~--~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~~~s~~~~~~~~~l  215 (373)
                      +.++..++..++.+++|..        ++|+++  ++++.|+..||.                |++.+ |+ |      |
T Consensus       334 ~~~~~~~~~~l~~l~~g~~~~~~l~GPv~I~~~~~~~~~~g~~~~l~----------------~~a~i-Si-~------L  389 (449)
T PRK10779        334 WQLMKLTVSMLGKLITGDVKLNNLSGPISIAQGAGMSAEYGLVYYLM----------------FLALI-SV-N------L  389 (449)
T ss_pred             HHHHHHHHHHHHHHhcCCccHhhcCCcHHHHHHHHHHHHHHHHHHHH----------------HHHHH-HH-H------H
Confidence            8899999999999999976        899998  889999999999                99999 99 9      9


Q ss_pred             EEEEEcC----CCceE---EEEEEecCCHHHHHHHhccccCCCchhhhchhheeeee
Q psy2827         216 DIKILLP----DREVI---TVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIV  265 (373)
Q Consensus       216 ~l~nlLP----DGg~i---~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~  265 (373)
                      +++||||    ||||+   .+|.+++++++++++.+++++|++.++++|.|++|||+
T Consensus       390 gi~NLlPiP~LDGG~l~f~~~E~i~~r~~~~~~~~~~~~~G~~ll~~lm~~~~~nDi  446 (449)
T PRK10779        390 GIINLFPLPVLDGGHLLFLAIEKLKGGPVSERVQDFSYRIGSILLVLLMGLALFNDF  446 (449)
T ss_pred             HHHHcCCCCccCchHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999    99999   99999999999999999999999999999999999995

>TIGR00054 RIP metalloprotease RseP

Probab=99.87  E-value=6.6e-24  Score=213.01  Aligned_cols=192  Identities=18%  Similarity=0.183  Sum_probs=158.9

Q ss_pred             eEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh-CCCeEEEEEEecCccccccCCCCCCCCCeeeeee
Q psy2827          47 QHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS-GGDVLSLTVISVSPEEAERLEPPDDHSGYQQIDY  125 (373)
Q Consensus        47 ~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~-~g~~v~l~V~r~~~~~~~~~~~~~~~~~~~~iGi  125 (373)
                      +.|..|.++|||+++||++||+|++|||+++.+  |+++...++. .++++.+++.|.+......+.+... ... .+|+
T Consensus       205 ~vV~~V~~~SpA~~aGL~~GD~Iv~Vng~~V~s--~~dl~~~l~~~~~~~v~l~v~R~g~~~~~~v~~~~~-~~~-~iGi  280 (420)
T TIGR00054       205 PVLSDVTPNSPAEKAGLKEGDYIQSINGEKLRS--WTDFVSAVKENPGKSMDIKVERNGETLSISLTPEAK-GKI-GIGI  280 (420)
T ss_pred             cEEEEECCCCHHHHcCCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCceEEEEEECCEEEEEEEEEcCC-Cce-EEEE
Confidence            479999999999999999999999999999998  9999999987 6788999998866543333333111 111 2777


Q ss_pred             eecCC---CCCCCC-ccceecccccceeeeeeehhhhcccccc--------cchhHH--HHHhhcHHHHHHHHhchhhhh
Q psy2827         126 TEKRS---LPISIP-DYSYVNTEDESFVVFNIYMAGRHLCSRR--------LTEQQL--DSRRRGLEIYLEKVCAVRVIA  191 (373)
Q Consensus       126 ~~~~~---~p~si~-~~~~~~~~~~~~~~~~i~~~g~l~~~~r--------l~i~q~--~~rr~gl~~yl~~v~~~~~i~  191 (373)
                      .....   .+.++. ........+++++..++..++++++|+.        ++|+++  ++++.|+..||.         
T Consensus       281 ~~~~~~~~~~~~~~~a~~~~~~~t~~~~~~~~~~l~~l~~g~~~~~~lsGPvgI~~~~~~~~~~G~~~~l~---------  351 (420)
T TIGR00054       281 SPSLAPLEVSYGILNAFAKGASATVDIVKLILTNLGKLITGSFKLKNLSGPVGIVKGAGSSANSGIVYLLQ---------  351 (420)
T ss_pred             eccccceeeecCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhcCCcHHHHHHHHHHHHHhHHHHHH---------
Confidence            54321   111221 2344567889999999999999999976        888888  889999999999         


Q ss_pred             hhHHHHHHHHHhcccCCCCCccceEEEEEcC----CCceE---EEEEEecCCHHHHHHHhccccCCCchhhhchhheeee
Q psy2827         192 ESELMQEFLTDALDENGTNISSPVDIKILLP----DREVI---TVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEI  264 (373)
Q Consensus       192 ~s~~~~~FL~~~~s~~~~~~~~~l~l~nlLP----DGg~i---~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~  264 (373)
                             |++.+ |+ |      |+++||||    ||||+   .+|.++++|++++++.+++++|++++.++|+|++|||
T Consensus       352 -------~~a~i-Si-~------Lgi~NLLPiP~LDGG~llf~~iE~i~gkpv~~~~~~~~~~iG~~lll~Lm~~~~~nD  416 (420)
T TIGR00054       352 -------FGAFL-SI-N------LGIMNLLPIPALDGGQLLFLFIEAIRGKPLPEKVQAFVYRIGVAFLLFLMGLGLFND  416 (420)
T ss_pred             -------HHHHH-HH-H------HHHHHhcCCCCCCcHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   99999 99 8      99999999    99999   9999999999999999999999999999999999999


Q ss_pred             ec
Q psy2827         265 VE  266 (373)
Q Consensus       265 ~~  266 (373)
                      +.
T Consensus       417 i~  418 (420)
T TIGR00054       417 LL  418 (420)
T ss_pred             hh
Confidence            63

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]

Probab=99.36  E-value=8.8e-12  Score=96.45  Aligned_cols=80  Identities=39%  Similarity=0.657  Sum_probs=69.3

Q ss_pred             EEEEEc-CCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHH
Q psy2827          11 EVQIAK-SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELI   89 (373)
Q Consensus        11 ~v~l~r-~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i   89 (373)
                      +|++.| ...+|||++.+..+..           .++++|..|.++|||+++||++||+|++|||+++.++++.++..++
T Consensus         1 ~v~l~k~~~~~lG~~l~~~~~~~-----------~~~~~V~~v~~~~~a~~~gl~~GD~Il~INg~~v~~~~~~~~~~~l   69 (81)
T PF00595_consen    1 QVTLEKSGNGPLGFTLRGGSDND-----------EKGVFVSSVVPGSPAERAGLKVGDRILEINGQSVRGMSHDEVVQLL   69 (81)
T ss_dssp             EEEEEESTTSBSSEEEEEESTSS-----------SEEEEEEEECTTSHHHHHTSSTTEEEEEETTEESTTSBHHHHHHHH
T ss_pred             CEEEEeCCCCCcCEEEEecCCCC-----------cCCEEEEEEeCCChHHhcccchhhhhheeCCEeCCCCCHHHHHHHH
Confidence            578898 5578999999875421           1356899999999999999999999999999999999999999999


Q ss_pred             HhCCCeEEEEEE
Q psy2827          90 KSGGDVLSLTVI  101 (373)
Q Consensus        90 ~~~g~~v~l~V~  101 (373)
                      +.++.+++|+|.
T Consensus        70 ~~~~~~v~L~V~   81 (81)
T PF00595_consen   70 KSASNPVTLTVQ   81 (81)
T ss_dssp             HHSTSEEEEEEE
T ss_pred             HCCCCcEEEEEC
Confidence            998779998874

PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....

>smart00295 B41 Band 4

Probab=99.20  E-value=1.1e-10  Score=105.59  Aligned_cols=133  Identities=18%  Similarity=0.203  Sum_probs=99.8

Q ss_pred             cceEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeecccee-eccCcCCCCceeeeccccCC-
Q psy2827         213 SPVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFE-RKLEAKEFPHHLYIQNYSTA-  290 (373)
Q Consensus       213 ~~l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~~~~-r~l~~~e~p~~~~~~~~~~~-  290 (373)
                      .+..+.++||||..+.+++....++.++++.++.++|+   ....+|+||......-. +-|.    |.. .+....+. 
T Consensus         2 ~~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l---~~~~~F~L~~~~~~~~~~~~l~----~~~-~l~~~~~~~   73 (207)
T smart00295        2 KPRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGI---RESEYFGLQFEDPDEDLSHWLD----PAK-TLLDQDVKS   73 (207)
T ss_pred             CcEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCC---CccceeEEEEEcCCCCcCeeCC----Ccc-CHHHhcCCC
Confidence            45789999999999999999999999999999999999   45899999987643211 1111    111 11111111 


Q ss_pred             CCceEEEEeeccCChhhhhcccCChHHHHHHHHHHHHHHhcCCccch-hhHHHHHHHHhccchHHh
Q psy2827         291 SATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRAE-DRLYELKALQDASRKHEI  355 (373)
Q Consensus       291 ~~~~~~lrk~~~~~~~~~~l~~~d~~a~~~ly~Q~~~dv~~~~~~~~-~~~~~L~~lq~~~~~~~~  355 (373)
                      ....+.+|+.+|.|.. ..+.. |+++++|+|.|+.+||.+|++.++ +...+|+||+-+-...+|
T Consensus        74 ~~~~l~fr~r~~~~~~-~~~~~-d~~~~~~ly~Q~~~di~~g~~~~~~~~~~~Laal~~q~~~gd~  137 (207)
T smart00295       74 EPLTLYFRVKFYPPDP-LQLKE-DPTRLNLLYLQVRNDILEGRLPCPEEEALLLAALALQAEFGDY  137 (207)
T ss_pred             CCcEEEEEEEEccCCH-HHhcc-hhHHHHHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHhcCC
Confidence            1234889999996653 45666 999999999999999999999876 899999999877554443

1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.

>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

Probab=99.08  E-value=2.5e-09  Score=82.34  Aligned_cols=80  Identities=49%  Similarity=0.748  Sum_probs=66.3

Q ss_pred             cEEEEEEcC-CCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHH
Q psy2827           9 PREVQIAKS-DTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVE   87 (373)
Q Consensus         9 ~r~v~l~r~-~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~   87 (373)
                      ++.+++.++ ..+|||++.+....            ..+++|..|.++|||+++||++||+|++|||.++.++++.++..
T Consensus         1 ~~~~~l~~~~~~~~G~~~~~~~~~------------~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~~~~~~~~   68 (82)
T cd00992           1 VRTVTLRKDPGGGLGFSLRGGKDS------------GGGIFVSRVEPGGPAERGGLRVGDRILEVNGVSVEGLTHEEAVE   68 (82)
T ss_pred             CEEEEEEeCCCCCcCEEEeCcccC------------CCCeEEEEECCCChHHhCCCCCCCEEEEECCEEcCccCHHHHHH
Confidence            367888888 57899999876321            13458999999999999999999999999999999777999999


Q ss_pred             HHHhCCCeEEEEE
Q psy2827          88 LIKSGGDVLSLTV  100 (373)
Q Consensus        88 ~i~~~g~~v~l~V  100 (373)
                      .++.....+++++
T Consensus        69 ~l~~~~~~v~l~v   81 (82)
T cd00992          69 LLKNSGDEVTLTV   81 (82)
T ss_pred             HHHhCCCeEEEEE
Confidence            9998655777665

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.

>KOG3550|consensus

Probab=99.02  E-value=1.1e-09  Score=92.32  Aligned_cols=92  Identities=38%  Similarity=0.720  Sum_probs=78.1

Q ss_pred             CCCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCC
Q psy2827           3 STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGAT   81 (373)
Q Consensus         3 ~~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s   81 (373)
                      |+.-.-||.|.|.|...|+||++-|++.++.           | ++|+.+.||+.|++-| |+.||++++|||..+++-.
T Consensus        85 seghahprvvelpktdeglgfnvmggkeqns-----------p-iyisriipggvadrhgglkrgdqllsvngvsvege~  152 (207)
T KOG3550|consen   85 SEGHAHPRVVELPKTDEGLGFNVMGGKEQNS-----------P-IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEH  152 (207)
T ss_pred             hccCCCCceeecCccccccceeeccCcccCC-----------c-eEEEeecCCccccccCcccccceeEeecceeecchh
Confidence            3445678999999999999999999977643           3 4999999999999876 9999999999999999888


Q ss_pred             HHHHHHHHHhCCCeEEEEEEecCccc
Q psy2827          82 HKQVVELIKSGGDVLSLTVISVSPEE  107 (373)
Q Consensus        82 ~~~~~~~i~~~g~~v~l~V~r~~~~~  107 (373)
                      |+..+++++.+-..+.+.| |.+|..
T Consensus       153 hekavellkaa~gsvklvv-rytpkv  177 (207)
T KOG3550|consen  153 HEKAVELLKAAVGSVKLVV-RYTPKV  177 (207)
T ss_pred             hHHHHHHHHHhcCcEEEEE-ecChHH
Confidence            9999999999767777765 667653

>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

Probab=99.00  E-value=7.5e-11  Score=116.90  Aligned_cols=193  Identities=21%  Similarity=0.231  Sum_probs=136.0

Q ss_pred             EEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh-CCCe---EEEEEEe-cCcc--------ccccCCCC
Q psy2827          48 HVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS-GGDV---LSLTVIS-VSPE--------EAERLEPP  114 (373)
Q Consensus        48 ~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~-~g~~---v~l~V~r-~~~~--------~~~~~~~~  114 (373)
                      .+..+..+++|+.+|+++||+++++|+.++.+  ++++...+.. .+..   +.+.+.| ....        ......|.
T Consensus       132 ~~~~v~~~s~a~~a~l~~Gd~iv~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~  209 (375)
T COG0750         132 VVGEVAPKSAAALAGLRPGDRIVAVDGEKVAS--WDDVRRLLVAAAGDVFNLLTILVIRLDGEAHAVAAEIIKSLGLTPV  209 (375)
T ss_pred             eeeecCCCCHHHHcCCCCCCEEEeECCEEccC--HHHHHHHHHhccCCcccceEEEEEeccceeeeccccceeeEeeecc
Confidence            45578999999999999999999999999999  9998888776 5555   6777777 2111        01111111


Q ss_pred             ----CCCCCe-----eeeeeeecCC-------CCCCCC-ccceecccccceeeeeeehhhhcccccc--------cchhH
Q psy2827         115 ----DDHSGY-----QQIDYTEKRS-------LPISIP-DYSYVNTEDESFVVFNIYMAGRHLCSRR--------LTEQQ  169 (373)
Q Consensus       115 ----~~~~~~-----~~iGi~~~~~-------~p~si~-~~~~~~~~~~~~~~~~i~~~g~l~~~~r--------l~i~q  169 (373)
                          ......     +.+|..+..+       .+.++. ........++.++..++.....+..+..        +++.+
T Consensus       210 ~~~~~~~~~~~~i~~~~i~~~p~~~~~~~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~l~Gpi~i~~  289 (375)
T COG0750         210 VIPLKPGDKIVAVDVGAIGLSPNGEPDVGKVLVKYGPLEAVGLAVEKTGRLVKLTLKMLKKLITGDLSLKNLSGPIGIAK  289 (375)
T ss_pred             eeccCCCCEEEEeeeeeeeeccCCCCccceeeeccCHHHHHHHHHHHHHHHHHHHHHHHHHheecccccccccCceehhh
Confidence                111111     1344443300       000000 0112233455555555556666666654        66777


Q ss_pred             H--HHHhhcHHHHHHHHhchhhhhhhHHHHHHHHHhcccCCCCCccceEEEEEcC----CCceE---EEEEEecCCHHHH
Q psy2827         170 L--DSRRRGLEIYLEKVCAVRVIAESELMQEFLTDALDENGTNISSPVDIKILLP----DREVI---TVSVRKSATADEV  240 (373)
Q Consensus       170 ~--~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~~~s~~~~~~~~~l~l~nlLP----DGg~i---~ie~~~~~~~~~~  240 (373)
                      .  +.++.|+..+++                |++.+ |+ +      ++++||||    ||||+   .+|.+++++.+.+
T Consensus       290 ~~~~~~~~~~~~~l~----------------~~~~l-si-~------lg~lNllP~p~LDGG~i~~~~~e~~~g~~~~~~  345 (375)
T COG0750         290 IAGAAASLGLINLLF----------------FLALL-SI-N------LGILNLLPIPPLDGGHLLFYLLEALRGKPLSER  345 (375)
T ss_pred             hhhHHHhhHHHHHHH----------------HHHHH-HH-H------HHHHhccCCCccCccHHHHHHHHHHhCCCCCHH
Confidence            7  566689999999                99999 88 8      99999999    99999   8888999999999


Q ss_pred             HHHhccccCCCchhhhchhheeeeec
Q psy2827         241 YASAVPKLYLQSPSSAAYFYLFEIVE  266 (373)
Q Consensus       241 ~~~~~~~igl~~~~~l~~f~lf~~~~  266 (373)
                      .+...+.+|++.+..+|++++|+|..
T Consensus       346 ~~~~~~~~g~~ll~~~~~~~~~~di~  371 (375)
T COG0750         346 VEAALYRIGLALLLLLMLLATFNDLL  371 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999864

>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

Probab=98.98  E-value=5.8e-09  Score=77.92  Aligned_cols=67  Identities=43%  Similarity=0.648  Sum_probs=57.5

Q ss_pred             CccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh-CCCeEEE
Q psy2827          20 GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS-GGDVLSL   98 (373)
Q Consensus        20 g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~-~g~~v~l   98 (373)
                      ++||++.+...              ++++|..|.+++||+.+||++||+|++|||.++.+++++++...++. .|+.+++
T Consensus         2 ~~G~~~~~~~~--------------~~~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l   67 (70)
T cd00136           2 GLGFSIRGGTE--------------GGVVVLSVEPGSPAERAGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTL   67 (70)
T ss_pred             CccEEEecCCC--------------CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEE
Confidence            57888877521              24589999999999999999999999999999999777999999998 5688888


Q ss_pred             EE
Q psy2827          99 TV  100 (373)
Q Consensus        99 ~V  100 (373)
                      ++
T Consensus        68 ~v   69 (70)
T cd00136          68 TV   69 (70)
T ss_pred             EE
Confidence            76

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos

>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C

Probab=98.96  E-value=6.7e-09  Score=80.52  Aligned_cols=59  Identities=36%  Similarity=0.545  Sum_probs=52.6

Q ss_pred             ceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecCcc
Q psy2827          46 LQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSPE  106 (373)
Q Consensus        46 ~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~~~  106 (373)
                      ++.|..|.++|||+++||++||.|++|||.++.+  +.++...+..  .|+.+++++.|....
T Consensus        15 g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~--~~~~~~~l~~~~~g~~v~l~v~R~g~~   75 (82)
T PF13180_consen   15 GVVVVSVIPGSPAAKAGLQPGDIILAINGKPVNS--SEDLVNILSKGKPGDTVTLTVLRDGEE   75 (82)
T ss_dssp             SEEEEEESTTSHHHHTTS-TTEEEEEETTEESSS--HHHHHHHHHCSSTTSEEEEEEEETTEE
T ss_pred             eEEEEEeCCCCcHHHCCCCCCcEEEEECCEEcCC--HHHHHHHHHhCCCCCEEEEEEEECCEE
Confidence            5689999999999999999999999999999988  9999999976  699999999996543

...

>KOG3209|consensus

Probab=98.92  E-value=3.6e-09  Score=107.98  Aligned_cols=86  Identities=33%  Similarity=0.546  Sum_probs=72.8

Q ss_pred             CCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHH
Q psy2827           5 QQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHK   83 (373)
Q Consensus         5 ~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~   83 (373)
                      +...-.+|+|.|+.+||||+|+|++.            |.-..+|-.+.+++||.+.| ++.||+|++|||++..+++|+
T Consensus       895 qn~~~~~VelErG~kGFGFSiRGGre------------ynM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~  962 (984)
T KOG3209|consen  895 QNGDLYTVELERGAKGFGFSIRGGRE------------YNMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHD  962 (984)
T ss_pred             ccCCeeEEEeeccccccceEeecccc------------cccceEEEEeccCCCccccCceeecceEEEecCcccCCCcHH
Confidence            34456789999999999999999843            22234899999999999999 999999999999999999999


Q ss_pred             HHHHHHHhCCCeEEEEEEe
Q psy2827          84 QVVELIKSGGDVLSLTVIS  102 (373)
Q Consensus        84 ~~~~~i~~~g~~v~l~V~r  102 (373)
                      .++++|++.|..+.+.+.+
T Consensus       963 rAIelIk~gg~~vll~Lr~  981 (984)
T KOG3209|consen  963 RAIELIKQGGRRVLLLLRR  981 (984)
T ss_pred             HHHHHHHhCCeEEEEEecc
Confidence            9999999977766555443

>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2

Probab=98.92  E-value=2.8e-08  Score=76.59  Aligned_cols=81  Identities=42%  Similarity=0.643  Sum_probs=66.9

Q ss_pred             EEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHH
Q psy2827          10 REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELI   89 (373)
Q Consensus        10 r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i   89 (373)
                      ..+++.+....+||.+......            .++++|..|.++|||+++||++||+|++|||.++.+++..+....+
T Consensus         3 ~~~~~~~~~~~~G~~~~~~~~~------------~~~~~i~~v~~~s~a~~~gl~~GD~I~~In~~~v~~~~~~~~~~~~   70 (85)
T smart00228        3 RLVELEKGGGGLGFSLVGGKDE------------GGGVVVSSVVPGSPAAKAGLKVGDVILEVNGTSVEGLTHLEAVDLL   70 (85)
T ss_pred             EEEEEEECCCcccEEEECCCCC------------CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            5677888887899998765211            1356899999999999999999999999999999998888888888


Q ss_pred             HhCCCeEEEEEEe
Q psy2827          90 KSGGDVLSLTVIS  102 (373)
Q Consensus        90 ~~~g~~v~l~V~r  102 (373)
                      +..+..+.+++.|
T Consensus        71 ~~~~~~~~l~i~r   83 (85)
T smart00228       71 KKAGGKVTLTVLR   83 (85)
T ss_pred             HhCCCeEEEEEEe
Confidence            7766688888766

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.

>KOG3209|consensus

Probab=98.90  E-value=4.2e-09  Score=107.47  Aligned_cols=86  Identities=33%  Similarity=0.656  Sum_probs=74.6

Q ss_pred             CCCCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCC
Q psy2827           4 TQQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGAT   81 (373)
Q Consensus         4 ~~~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s   81 (373)
                      ..+..|..|.|+|+. .||||.|.....             +|..-|+.+.+||||++.| |+.||+|++|||+.|.+++
T Consensus       749 ~~~~~~yDV~lhR~ENeGFGFVi~sS~~-------------kp~sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~~ls  815 (984)
T KOG3209|consen  749 AAPSGPYDVVLHRKENEGFGFVIMSSQN-------------KPESGIGRIIEGSPADRCGKLKVGDRILAVNGQSILNLS  815 (984)
T ss_pred             cCCCCCeeeEEecccCCceeEEEEeccc-------------CCCCCccccccCChhHhhccccccceEEEecCeeeeccC
Confidence            345668889999886 699999987643             2333499999999999999 9999999999999999999


Q ss_pred             HHHHHHHHHhCCCeEEEEEEe
Q psy2827          82 HKQVVELIKSGGDVLSLTVIS  102 (373)
Q Consensus        82 ~~~~~~~i~~~g~~v~l~V~r  102 (373)
                      |.+++++|+.+|-.|+|+|..
T Consensus       816 Hadiv~LIKdaGlsVtLtIip  836 (984)
T KOG3209|consen  816 HADIVSLIKDAGLSVTLTIIP  836 (984)
T ss_pred             chhHHHHHHhcCceEEEEEcC
Confidence            999999999999999999874

>KOG3549|consensus

Probab=98.90  E-value=3.8e-09  Score=100.05  Aligned_cols=87  Identities=30%  Similarity=0.567  Sum_probs=77.1

Q ss_pred             CCCCCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCC
Q psy2827           3 STQQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGA   80 (373)
Q Consensus         3 ~~~~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~   80 (373)
                      +|..++.|+|+|.|-+ +|+|++|.|+.++.           .|. +|+.+.++-.|+..| |-.||-|++|||..|..+
T Consensus        49 ~p~~s~eRtVtirRQ~vGGlGLSIKGGaEHn-----------~Pv-viSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c  116 (505)
T KOG3549|consen   49 PPMESKERTVTIRRQKVGGLGLSIKGGAEHN-----------LPV-VISKIYKDQAADITGQLFVGDAILQVNGIYVTAC  116 (505)
T ss_pred             CCccCCceeEEEEeeecCcceeeeccccccC-----------ccE-EeehhhhhhhhhhcCceEeeeeeEEeccEEeecC
Confidence            4566788999999987 67999999985442           343 799999999999999 789999999999999999


Q ss_pred             CHHHHHHHHHhCCCeEEEEEE
Q psy2827          81 THKQVVELIKSGGDVLSLTVI  101 (373)
Q Consensus        81 s~~~~~~~i~~~g~~v~l~V~  101 (373)
                      +|++++++++++|+.+++||.
T Consensus       117 ~HeevV~iLRNAGdeVtlTV~  137 (505)
T KOG3549|consen  117 PHEEVVNILRNAGDEVTLTVK  137 (505)
T ss_pred             ChHHHHHHHHhcCCEEEEEeH
Confidence            999999999999999999996

>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

Probab=98.71  E-value=1e-07  Score=73.89  Aligned_cols=57  Identities=35%  Similarity=0.578  Sum_probs=50.7

Q ss_pred             eEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh-CCCeEEEEEEec
Q psy2827          47 QHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS-GGDVLSLTVISV  103 (373)
Q Consensus        47 ~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~-~g~~v~l~V~r~  103 (373)
                      ++|..+.++|||+++||++||+|++|||.++.++++.++...++. .++.+.+++.|.
T Consensus        15 ~~V~~v~~~s~a~~~gl~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~   72 (85)
T cd00988          15 LVITSVLPGSPAAKAGIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG   72 (85)
T ss_pred             EEEEEecCCCCHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence            579999999999999999999999999999999555999888876 678899998774

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=98.66  E-value=1.8e-07  Score=71.99  Aligned_cols=58  Identities=26%  Similarity=0.451  Sum_probs=51.9

Q ss_pred             CceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecC
Q psy2827          45 PLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVS  104 (373)
Q Consensus        45 p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~  104 (373)
                      .++.|..|.++|||+++||++||.|++|||.++.+  |+++...+..  .++.+.+++.|.+
T Consensus        10 ~Gv~V~~V~~~spa~~aGL~~GDiI~~Ing~~v~~--~~d~~~~l~~~~~g~~v~l~v~r~g   69 (79)
T cd00991          10 AGVVIVGVIVGSPAENAVLHTGDVIYSINGTPITT--LEDFMEALKPTKPGEVITVTVLPST   69 (79)
T ss_pred             CcEEEEEECCCChHHhcCCCCCCEEEEECCEEcCC--HHHHHHHHhcCCCCCEEEEEEEECC
Confidence            35689999999999999999999999999999998  9999999986  3788999988744

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=98.66  E-value=2e-07  Score=71.17  Aligned_cols=56  Identities=34%  Similarity=0.588  Sum_probs=50.0

Q ss_pred             eEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh-CCCeEEEEEEecC
Q psy2827          47 QHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS-GGDVLSLTVISVS  104 (373)
Q Consensus        47 ~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~-~g~~v~l~V~r~~  104 (373)
                      +.|..|.++|||+++||++||+|++|||.++.+  ++++...+.. .+..+.+++.|..
T Consensus        14 ~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~--~~~~~~~l~~~~~~~~~l~v~r~~   70 (79)
T cd00989          14 PVIGEVVPGSPAAKAGLKAGDRILAINGQKIKS--WEDLVDAVQENPGKPLTLTVERNG   70 (79)
T ss_pred             cEEEeECCCCHHHHcCCCCCCEEEEECCEECCC--HHHHHHHHHHCCCceEEEEEEECC
Confidence            379999999999999999999999999999998  9999988887 4778888887743

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd06886 PX_SNX27 The phosphoinositide binding Phox Homology domain of Sorting Nexin 27

Probab=98.44  E-value=2.9e-07  Score=75.08  Aligned_cols=73  Identities=73%  Similarity=1.226  Sum_probs=59.2

Q ss_pred             CCCCCCCccceecccccceeeeeeehhhhcccccc------------------------------cchhHHHHHhhcHHH
Q psy2827         130 SLPISIPDYSYVNTEDESFVVFNIYMAGRHLCSRR------------------------------LTEQQLDSRRRGLEI  179 (373)
Q Consensus       130 ~~p~si~~~~~~~~~~~~~~~~~i~~~g~l~~~~r------------------------------l~i~q~~~rr~gl~~  179 (373)
                      ++++++|++......+..|++|+|++.|...+.+|                              .+...+++||.||+.
T Consensus         3 ~~~i~Ip~~~~~~~~~~~yvvY~I~~~~~~~v~rRyseF~~L~~~L~~~~~~~~~p~lP~K~~~~~~~~~ie~Rr~~Le~   82 (106)
T cd06886           3 SVPISIPDYKHVEQNGEKFVVYNIYMAGRQLCSRRYREFANLHQNLKKEFPDFQFPKLPGKWPFSLSEQQLDARRRGLEQ   82 (106)
T ss_pred             cceEecCCcceEcCCCCcEEEEEEEEcCCEEEEechHHHHHHHHHHHHHcCCCCCCCCCCCCcCCCCHHHHHHHHHHHHH
Confidence            34556677665555577999999998887777776                              244556999999999


Q ss_pred             HHHHHhchhhhhhhHHHHHHHHH
Q psy2827         180 YLEKVCAVRVIAESELMQEFLTD  202 (373)
Q Consensus       180 yl~~v~~~~~i~~s~~~~~FL~~  202 (373)
                      ||+.++++|.|.+|+.|++||..
T Consensus        83 fL~~l~~~p~l~~s~~~~~FL~~  105 (106)
T cd06886          83 YLEKVCSIRVIGESDIMQDFLSD  105 (106)
T ss_pred             HHHHHhcCcccccCHHHHHHhcc
Confidence            99999999999999999999963

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX27 contains an N-terminal PDZ domain followed by a PX domain and a Ras-Associated (RA) domain. It binds G protein-gated potassium (Kir3) channels, which play a role in neuronal excitability control, through its PDZ domain. SNX27 downregulates Kir3 channels by promoting their movement in the endosome, reducing surface

>KOG3651|consensus

Probab=98.44  E-value=8.3e-07  Score=82.98  Aligned_cols=84  Identities=27%  Similarity=0.476  Sum_probs=73.6

Q ss_pred             CcEEEEEEcCCCC-ccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHH
Q psy2827           8 GPREVQIAKSDTG-FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQV   85 (373)
Q Consensus         8 ~~r~v~l~r~~~g-~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~   85 (373)
                      .+.+|+|.|+.++ .|++|.|+            .||.|+.+|-.|..++||++.| ++.||.|++|||..|.+.+.-++
T Consensus         4 ~~~~v~ltKD~~nliGISIGGG------------apyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveV   71 (429)
T KOG3651|consen    4 QSETVELTKDEKNLIGISIGGG------------APYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEV   71 (429)
T ss_pred             ccCcEEEeeccccceeEEecCC------------CCcCCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHH
Confidence            4567999999876 79998764            6789999999999999999999 99999999999999999889999


Q ss_pred             HHHHHhCCCeEEEEEEec
Q psy2827          86 VELIKSGGDVLSLTVISV  103 (373)
Q Consensus        86 ~~~i~~~g~~v~l~V~r~  103 (373)
                      .++|+....++.+.+-..
T Consensus        72 AkmIQ~~~~eV~IhyNKL   89 (429)
T KOG3651|consen   72 AKMIQVSLNEVKIHYNKL   89 (429)
T ss_pred             HHHHHHhccceEEEehhc
Confidence            999998777888877543

>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

Probab=98.44  E-value=1.4e-06  Score=66.78  Aligned_cols=56  Identities=32%  Similarity=0.446  Sum_probs=45.9

Q ss_pred             ceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCeEEEEEEecC
Q psy2827          46 LQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVS  104 (373)
Q Consensus        46 ~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~~g~~v~l~V~r~~  104 (373)
                      ++.|..|.++|||+++||++||+|++|||.++.+  +.++.... ..++.+.+++.|..
T Consensus        13 ~~~V~~V~~~s~a~~aGl~~GD~I~~Ing~~v~~--~~~~l~~~-~~~~~v~l~v~r~g   68 (80)
T cd00990          13 LGKVTFVRDDSPADKAGLVAGDELVAVNGWRVDA--LQDRLKEY-QAGDPVELTVFRDD   68 (80)
T ss_pred             cEEEEEECCCChHHHhCCCCCCEEEEECCEEhHH--HHHHHHhc-CCCCEEEEEEEECC
Confidence            3579999999999999999999999999999987  66654433 25678888887743

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3551|consensus

Probab=98.39  E-value=4.2e-07  Score=87.46  Aligned_cols=81  Identities=33%  Similarity=0.558  Sum_probs=71.1

Q ss_pred             cEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHH
Q psy2827           9 PREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVV   86 (373)
Q Consensus         9 ~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~   86 (373)
                      .|.|++.|-. +|+|++|+|+.+...           | +.|+.+.+|-.|++.+ |..||.|++|||....+.+|++.+
T Consensus        85 ~R~V~V~K~d~gGLGISIKGGreNkM-----------P-IlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAV  152 (506)
T KOG3551|consen   85 ERRVRVVKQDAGGLGISIKGGRENKM-----------P-ILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAV  152 (506)
T ss_pred             cceeEEEEecCCcceEEeecCcccCC-----------c-eehhHhccccccccccceeeccEEEEecchhhhhcchHHHH
Confidence            4778888764 789999999965433           3 4799999999999999 999999999999999999999999


Q ss_pred             HHHHhCCCeEEEEEE
Q psy2827          87 ELIKSGGDVLSLTVI  101 (373)
Q Consensus        87 ~~i~~~g~~v~l~V~  101 (373)
                      +.+++.|+.|.+.|.
T Consensus       153 qaLKraGkeV~levK  167 (506)
T KOG3551|consen  153 QALKRAGKEVLLEVK  167 (506)
T ss_pred             HHHHhhCceeeeeee
Confidence            999999999988875

>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases

Probab=98.38  E-value=2.3e-06  Score=65.65  Aligned_cols=56  Identities=27%  Similarity=0.418  Sum_probs=48.9

Q ss_pred             ceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecC
Q psy2827          46 LQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVS  104 (373)
Q Consensus        46 ~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~  104 (373)
                      ++.|..|.++|||+. ||++||.|++|||.++.+  |+++...+..  .+..+.+++.|.+
T Consensus         9 Gv~V~~V~~~s~A~~-gL~~GD~I~~Ing~~v~~--~~~~~~~l~~~~~~~~v~l~v~r~g   66 (79)
T cd00986           9 GVYVTSVVEGMPAAG-KLKAGDHIIAVDGKPFKE--AEELIDYIQSKKEGDTVKLKVKREE   66 (79)
T ss_pred             CEEEEEECCCCchhh-CCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEEEEECC
Confidence            357999999999986 899999999999999998  9999999875  5788999988743

Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

Probab=98.38  E-value=2.4e-06  Score=66.70  Aligned_cols=57  Identities=35%  Similarity=0.440  Sum_probs=51.0

Q ss_pred             ceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecC
Q psy2827          46 LQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVS  104 (373)
Q Consensus        46 ~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~  104 (373)
                      ++.|..|.++|||+++|+++||.|++|||.++.+  +.++...+..  .+..+.+++.|.+
T Consensus        25 g~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~i~~--~~~~~~~l~~~~~~~~i~l~v~r~g   83 (90)
T cd00987          25 GVLVASVDPGSPAAKAGLKPGDVILAVNGKPVKS--VADLRRALAELKPGDKVTLTVLRGG   83 (90)
T ss_pred             EEEEEEECCCCHHHHcCCCcCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECC
Confidence            5689999999999999999999999999999998  9999988877  3788999987743

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PRK10139 serine endoprotease; Provisional

Probab=98.37  E-value=3.7e-06  Score=85.64  Aligned_cols=95  Identities=15%  Similarity=0.205  Sum_probs=67.8

Q ss_pred             CcEEEEEEcCCCCccEEEEecccCCCccccccccccC--------------CceEEEEecCCCHHHHcCCCCCCEEEEEC
Q psy2827           8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYA--------------PLQHVSAVLAGGAAEKAGIRKGDRILAVN   73 (373)
Q Consensus         8 ~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~--------------p~~~V~~V~~gspA~~aGL~~GD~Il~In   73 (373)
                      ..-.+++.|+++..-+++.............+..+..              .+++|..|.++|||+++||++||+|++||
T Consensus       339 ~~v~l~V~R~G~~~~l~v~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~Gv~V~~V~~~spA~~aGL~~GD~I~~In  418 (455)
T PRK10139        339 TKVKLGLLRNGKPLEVEVTLDTSTSSSASAEMITPALQGATLSDGQLKDGTKGIKIDEVVKGSPAAQAGLQKDDVIIGVN  418 (455)
T ss_pred             CEEEEEEEECCEEEEEEEEECCCCCcccccccccccccccEecccccccCCCceEEEEeCCCChHHHcCCCCCCEEEEEC
Confidence            3456777787765555554332111111222222211              24689999999999999999999999999


Q ss_pred             CEEcCCCCHHHHHHHHHhCCCeEEEEEEecC
Q psy2827          74 NVNVEGATHKQVVELIKSGGDVLSLTVISVS  104 (373)
Q Consensus        74 G~~v~~~s~~~~~~~i~~~g~~v~l~V~r~~  104 (373)
                      |+++.+  |+++.+.+++.++.+.+++.|..
T Consensus       419 g~~v~~--~~~~~~~l~~~~~~v~l~v~R~g  447 (455)
T PRK10139        419 RDRVNS--IAEMRKVLAAKPAIIALQIVRGN  447 (455)
T ss_pred             CEEcCC--HHHHHHHHHhCCCeEEEEEEECC
Confidence            999999  99999999885578889988754

>KOG3553|consensus

Probab=98.34  E-value=1.3e-06  Score=68.89  Aligned_cols=69  Identities=30%  Similarity=0.384  Sum_probs=55.3

Q ss_pred             ccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh
Q psy2827          21 FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS   91 (373)
Q Consensus        21 ~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~   91 (373)
                      .||.|.|+.++. +-.+.-..+ .-+++|.+|.+||||+.|||+.+|+|+.+||-...-.+|++++..|+.
T Consensus        37 ~GFkIGGGIDQD-p~k~Pf~yt-D~GiYvT~V~eGsPA~~AGLrihDKIlQvNG~DfTMvTHd~Avk~i~k  105 (124)
T KOG3553|consen   37 LGFKIGGGIDQD-PSKNPFSYT-DKGIYVTRVSEGSPAEIAGLRIHDKILQVNGWDFTMVTHDQAVKRITK  105 (124)
T ss_pred             EEEEeccccCCC-cccCCCCcC-CccEEEEEeccCChhhhhcceecceEEEecCceeEEEEhHHHHHHhhH
Confidence            899999986642 211111211 347899999999999999999999999999999988889999988876

>PLN00049 carboxyl-terminal processing protease; Provisional

Probab=98.17  E-value=9.5e-06  Score=81.13  Aligned_cols=59  Identities=32%  Similarity=0.452  Sum_probs=52.4

Q ss_pred             ceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh-CCCeEEEEEEecC
Q psy2827          46 LQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS-GGDVLSLTVISVS  104 (373)
Q Consensus        46 ~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~-~g~~v~l~V~r~~  104 (373)
                      ++.|..|.++|||+++||++||+|++|||+++.++++.++...++. .|..+.+++.|.+
T Consensus       103 g~~V~~V~~~SPA~~aGl~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~g  162 (389)
T PLN00049        103 GLVVVAPAPGGPAARAGIRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGP  162 (389)
T ss_pred             cEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEECC
Confidence            4579999999999999999999999999999998778898888876 6889999998743

>KOG3580|consensus

Probab=98.16  E-value=4.3e-06  Score=84.49  Aligned_cols=87  Identities=30%  Similarity=0.437  Sum_probs=72.1

Q ss_pred             cEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHH
Q psy2827           9 PREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVE   87 (373)
Q Consensus         9 ~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~   87 (373)
                      .+++||.|++ .|||+.|.|+.+.+.      +.-...-++|+.|.||+||+ .-|+.||+|+-|||+++++..|.-+++
T Consensus         9 QhTvTL~kdp~rGFGIAiSGGRDnPh------f~~getSiViSDVlpGGPAe-G~LQenDrvvMVNGvsMenv~haFAvQ   81 (1027)
T KOG3580|consen    9 QHTVTLQKDPKRGFGIAISGGRDNPH------FENGETSIVISDVLPGGPAE-GLLQENDRVVMVNGVSMENVLHAFAVQ   81 (1027)
T ss_pred             hheeeeecCCCCcceeEeecCCCCCC------ccCCceeEEEeeccCCCCcc-cccccCCeEEEEcCcchhhhHHHHHHH
Confidence            5899999998 489999999866432      11112346899999999998 449999999999999999988998999


Q ss_pred             HHHhCCCeEEEEEEe
Q psy2827          88 LIKSGGDVLSLTVIS  102 (373)
Q Consensus        88 ~i~~~g~~v~l~V~r  102 (373)
                      .++.+|+...++|.|
T Consensus        82 qLrksgK~A~ItvkR   96 (1027)
T KOG3580|consen   82 QLRKSGKVAAITVKR   96 (1027)
T ss_pred             HHHhhccceeEEecc
Confidence            999999988888865

>TIGR00225 prc C-terminal peptidase (prc)

Probab=98.14  E-value=9.3e-06  Score=79.54  Aligned_cols=58  Identities=33%  Similarity=0.580  Sum_probs=50.9

Q ss_pred             eEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh-CCCeEEEEEEecC
Q psy2827          47 QHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS-GGDVLSLTVISVS  104 (373)
Q Consensus        47 ~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~-~g~~v~l~V~r~~  104 (373)
                      +.|..|.++|||+++||++||+|++|||.++.+++..++...++. .|..+.+++.|.+
T Consensus        64 ~~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g  122 (334)
T TIGR00225        64 IVIVSPFEGSPAEKAGIKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAG  122 (334)
T ss_pred             EEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCC
Confidence            478999999999999999999999999999998666788777766 6889999998753

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=98.07  E-value=9.5e-06  Score=82.66  Aligned_cols=56  Identities=21%  Similarity=0.298  Sum_probs=50.5

Q ss_pred             EEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecCc
Q psy2827          48 HVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSP  105 (373)
Q Consensus        48 ~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~~  105 (373)
                      .|..|.++|||++|||++||+|++|||+++.+  |+++...+..  .++.+.+++.|.+.
T Consensus       129 lV~~V~~~SpA~kAGLk~GDvI~~vnG~~V~~--~~~l~~~v~~~~~g~~v~v~v~R~gk  186 (449)
T PRK10779        129 VVGEIAPNSIAAQAQIAPGTELKAVDGIETPD--WDAVRLALVSKIGDESTTITVAPFGS  186 (449)
T ss_pred             cccccCCCCHHHHcCCCCCCEEEEECCEEcCC--HHHHHHHHHhhccCCceEEEEEeCCc
Confidence            58999999999999999999999999999999  9999888765  57889999998654

>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous

Probab=98.05  E-value=3.8e-05  Score=65.51  Aligned_cols=86  Identities=28%  Similarity=0.327  Sum_probs=58.5

Q ss_pred             CCcEEEEEEcC-----CCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCC-CCEEEEECCEEcCCC
Q psy2827           7 TGPREVQIAKS-----DTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRK-GDRILAVNNVNVEGA   80 (373)
Q Consensus         7 ~~~r~v~l~r~-----~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~-GD~Il~InG~~v~~~   80 (373)
                      ...|.|.+.-.     .+.+|++++-...+..         ...+..|-.|.|+|||++|||++ .|.|+.+++....+ 
T Consensus         9 ~~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~~---------~~~~~~Vl~V~p~SPA~~AGL~p~~DyIig~~~~~l~~-   78 (138)
T PF04495_consen    9 QTTREVSIVPSKKWGGQGLLGISVRFESFEGA---------EEEGWHVLRVAPNSPAAKAGLEPFFDYIIGIDGGLLDD-   78 (138)
T ss_dssp             SSEEEEEE---SSSSSSSSS-EEEEEEE-TTG---------CCCEEEEEEE-TTSHHHHTT--TTTEEEEEETTCE--S-
T ss_pred             CeEEEEEEccCcccCCCCCCcEEEEEeccccc---------ccceEEEeEecCCCHHHHCCccccccEEEEccceecCC-
Confidence            45577777521     2449999987643211         13456899999999999999998 69999999998887 


Q ss_pred             CHHHHHHHHHh-CCCeEEEEEEec
Q psy2827          81 THKQVVELIKS-GGDVLSLTVISV  103 (373)
Q Consensus        81 s~~~~~~~i~~-~g~~v~l~V~r~  103 (373)
                       .+++.+.++. .++++.+.|-..
T Consensus        79 -~~~l~~~v~~~~~~~l~L~Vyns  101 (138)
T PF04495_consen   79 -EDDLFELVEANENKPLQLYVYNS  101 (138)
T ss_dssp             -TCHHHHHHHHTTTS-EEEEEEET
T ss_pred             -HHHHHHHHHHcCCCcEEEEEEEC
Confidence             7899999988 689999998753

GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=98.04  E-value=4.4e-05  Score=77.31  Aligned_cols=59  Identities=25%  Similarity=0.412  Sum_probs=53.1

Q ss_pred             CceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecCc
Q psy2827          45 PLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSP  105 (373)
Q Consensus        45 p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~~  105 (373)
                      .+++|..|.++|||+++||++||.|++|||+++.+  ++++.+++++  .++.+.+++.|...
T Consensus       362 ~Gv~V~~V~~~SpA~~aGL~~GDvI~~Ing~~V~s--~~d~~~~l~~~~~g~~v~l~v~R~g~  422 (428)
T TIGR02037       362 KGVVVTKVVSGSPAARAGLQPGDVILSVNQQPVSS--VAELRKVLDRAKKGGRVALLILRGGA  422 (428)
T ss_pred             CceEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            36789999999999999999999999999999998  9999999986  57899999988543

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>PRK10942 serine endoprotease; Provisional

Probab=98.04  E-value=4.9e-05  Score=77.88  Aligned_cols=96  Identities=21%  Similarity=0.184  Sum_probs=67.8

Q ss_pred             CCcEEEEEEcCCCCccEEEEecccC----CCcccccccccc-------CCceEEEEecCCCHHHHcCCCCCCEEEEECCE
Q psy2827           7 TGPREVQIAKSDTGFGFNVRGQVSE----GGQLRSINGELY-------APLQHVSAVLAGGAAEKAGIRKGDRILAVNNV   75 (373)
Q Consensus         7 ~~~r~v~l~r~~~g~Gfsi~g~~~~----~~~~~~~g~~~~-------~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~   75 (373)
                      ...-.+++.|+++..-+.+.-....    ......+|+...       ..+++|..|.++|||+++||++||+|++|||+
T Consensus       359 g~~v~l~v~R~G~~~~v~v~l~~~~~~~~~~~~~~lGl~g~~l~~~~~~~gvvV~~V~~~S~A~~aGL~~GDvIv~VNg~  438 (473)
T PRK10942        359 GSKLTLGLLRDGKPVNVNVELQQSSQNQVDSSNIFNGIEGAELSNKGGDKGVVVDNVKPGTPAAQIGLKKGDVIIGANQQ  438 (473)
T ss_pred             CCEEEEEEEECCeEEEEEEEeCcCcccccccccccccceeeecccccCCCCeEEEEeCCCChHHHcCCCCCCEEEEECCE
Confidence            3445677778776555554432110    011111332111       13568999999999999999999999999999


Q ss_pred             EcCCCCHHHHHHHHHhCCCeEEEEEEecC
Q psy2827          76 NVEGATHKQVVELIKSGGDVLSLTVISVS  104 (373)
Q Consensus        76 ~v~~~s~~~~~~~i~~~g~~v~l~V~r~~  104 (373)
                      ++.+  ++++.+.+++.+..+.++|.|..
T Consensus       439 ~V~s--~~dl~~~l~~~~~~v~l~V~R~g  465 (473)
T PRK10942        439 PVKN--IAELRKILDSKPSVLALNIQRGD  465 (473)
T ss_pred             EcCC--HHHHHHHHHhCCCeEEEEEEECC
Confidence            9999  99999999886678899998854

>KOG1892|consensus

Probab=98.04  E-value=1.3e-05  Score=84.63  Aligned_cols=82  Identities=28%  Similarity=0.517  Sum_probs=70.4

Q ss_pred             EEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHH
Q psy2827          10 REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVEL   88 (373)
Q Consensus        10 r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~~~   88 (373)
                      -+|+|.|. .|.|++|...++-++  +       .-|++|.+|.+|++|+..| |+.||++++|||+..-+.+.+.+.++
T Consensus       935 ~~vtL~Kn-nGmGLSIVAAkGaGq--~-------klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~l 1004 (1629)
T KOG1892|consen  935 ITVTLKKN-NGMGLSIVAAKGAGQ--R-------KLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARL 1004 (1629)
T ss_pred             EEEEEecc-CCceEEEEeeccCCc--c-------ccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHH
Confidence            45778777 899999987754322  1       3467899999999999988 99999999999999999999999999


Q ss_pred             HHhCCCeEEEEEE
Q psy2827          89 IKSGGDVLSLTVI  101 (373)
Q Consensus        89 i~~~g~~v~l~V~  101 (373)
                      +-+.|..|.+.|.
T Consensus      1005 mtrtg~vV~leVa 1017 (1629)
T KOG1892|consen 1005 MTRTGNVVHLEVA 1017 (1629)
T ss_pred             HhccCCeEEEehh
Confidence            9999999999985

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=98.03  E-value=1.9e-05  Score=79.97  Aligned_cols=59  Identities=31%  Similarity=0.452  Sum_probs=52.9

Q ss_pred             CceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecCc
Q psy2827          45 PLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSP  105 (373)
Q Consensus        45 p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~~  105 (373)
                      .+++|..|.++|||+++||++||+|++|||.++.+  +.++...+..  .++.+.+++.|...
T Consensus       257 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Vng~~i~~--~~~~~~~l~~~~~g~~v~l~v~R~g~  317 (428)
T TIGR02037       257 RGALVAQVLPGSPAEKAGLKAGDVILSVNGKPISS--FADLRRAIGTLKPGKKVTLGILRKGK  317 (428)
T ss_pred             CceEEEEccCCCChHHcCCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            46789999999999999999999999999999998  9999988876  58899999988544

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>TIGR01713 typeII_sec_gspC general secretion pathway protein C

Probab=97.98  E-value=2.8e-05  Score=73.38  Aligned_cols=58  Identities=19%  Similarity=0.215  Sum_probs=52.2

Q ss_pred             ceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecCc
Q psy2827          46 LQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSP  105 (373)
Q Consensus        46 ~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~~  105 (373)
                      |..|..+.+++||+++||++||.|++|||.++.+  ++++.+++.+  .++.++++|.|.+.
T Consensus       192 G~~v~~v~~~s~a~~aGLr~GDvIv~ING~~i~~--~~~~~~~l~~~~~~~~v~l~V~R~G~  251 (259)
T TIGR01713       192 GYRLNPGKDPSLFYKSGLQDGDIAVALNGLDLRD--PEQAFQALQMLREETNLTLTVERDGQ  251 (259)
T ss_pred             EEEEEecCCCCHHHHcCCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCeEEEEEEECCE
Confidence            5578899999999999999999999999999999  9999999887  56789999998654

This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.

>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]

Probab=97.97  E-value=2.9e-05  Score=77.92  Aligned_cols=57  Identities=32%  Similarity=0.572  Sum_probs=52.9

Q ss_pred             eEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh-CCCeEEEEEEec
Q psy2827          47 QHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS-GGDVLSLTVISV  103 (373)
Q Consensus        47 ~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~-~g~~v~l~V~r~  103 (373)
                      +.|.++.+++||++||+++||+|++|||.++.+.+.++++..++. .|..++|++.|.
T Consensus       114 ~~V~s~~~~~PA~kagi~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~  171 (406)
T COG0793         114 VKVVSPIDGSPAAKAGIKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRA  171 (406)
T ss_pred             cEEEecCCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEc
Confidence            468899999999999999999999999999999888999999988 799999999984

>PRK10139 serine endoprotease; Provisional

Probab=97.96  E-value=2.9e-05  Score=79.18  Aligned_cols=58  Identities=24%  Similarity=0.358  Sum_probs=52.6

Q ss_pred             ceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecCc
Q psy2827          46 LQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSP  105 (373)
Q Consensus        46 ~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~~  105 (373)
                      ++.|..|.++|||+++||++||+|++|||+++.+  |.++...+..  .|+.+.+++.|.+.
T Consensus       291 Gv~V~~V~~~SpA~~AGL~~GDvIl~InG~~V~s--~~dl~~~l~~~~~g~~v~l~V~R~G~  350 (455)
T PRK10139        291 GAFVSEVLPNSGSAKAGVKAGDIITSLNGKPLNS--FAELRSRIATTEPGTKVKLGLLRNGK  350 (455)
T ss_pred             ceEEEEECCCChHHHCCCCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            6689999999999999999999999999999999  9999988876  58889999988654

>KOG3605|consensus

Probab=97.92  E-value=2.5e-05  Score=79.81  Aligned_cols=136  Identities=18%  Similarity=0.280  Sum_probs=91.5

Q ss_pred             EEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHH
Q psy2827          10 REVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVE   87 (373)
Q Consensus        10 r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~~   87 (373)
                      +.|.+.|.. ..+|..|.-.          |+..-.|.++|.+...++||+++| |-.||+|++|||...-+++......
T Consensus       647 KEVvv~K~kGEiLGVViVES----------GWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs  716 (829)
T KOG3605|consen  647 KEVVLEKHKGEILGVVIVES----------GWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQS  716 (829)
T ss_pred             ceeeeecccCceeeEEEEec----------CccccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHH
Confidence            567777654 5799988754          122225777889999999999999 9999999999999999999999999


Q ss_pred             HHHh-C-CCeEEEEEEecCccccccCCCCCCCCCeeeeeeeecCCCCCCCCccceecccccceeeeeeehhhh
Q psy2827          88 LIKS-G-GDVLSLTVISVSPEEAERLEPPDDHSGYQQIDYTEKRSLPISIPDYSYVNTEDESFVVFNIYMAGR  158 (373)
Q Consensus        88 ~i~~-~-g~~v~l~V~r~~~~~~~~~~~~~~~~~~~~iGi~~~~~~p~si~~~~~~~~~~~~~~~~~i~~~g~  158 (373)
                      +|++ + ...|.++|.++.|-.+..+.-.   ...+.+|++....+-.+.-.-..+.+.|.+.---.|.+||.
T Consensus       717 ~Ik~~KnQT~VkltiV~cpPV~~V~I~RP---d~kyQLGFSVQNGiICSLlRGGIAERGGVRVGHRIIEINgQ  786 (829)
T KOG3605|consen  717 IIKGLKNQTAVKLNIVSCPPVTTVLIRRP---DLRYQLGFSVQNGIICSLLRGGIAERGGVRVGHRIIEINGQ  786 (829)
T ss_pred             HHhcccccceEEEEEecCCCceEEEeecc---cchhhccceeeCcEeehhhcccchhccCceeeeeEEEECCc
Confidence            9998 3 4679999999887654433221   23346777655433222211111234444444445555543

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=97.88  E-value=4.4e-05  Score=75.37  Aligned_cols=58  Identities=26%  Similarity=0.340  Sum_probs=52.3

Q ss_pred             CceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecC
Q psy2827          45 PLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVS  104 (373)
Q Consensus        45 p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~  104 (373)
                      .+++|..|.++|||+++||++||.|++|||+++.+  ++++.+.+.+  .|+.+.+++.|..
T Consensus       278 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s--~~dl~~~l~~~~~g~~v~l~v~R~g  337 (351)
T TIGR02038       278 RGIVITGVDPNGPAARAGILVRDVILKYDGKDVIG--AEELMDRIAETRPGSKVMVTVLRQG  337 (351)
T ss_pred             ccceEeecCCCChHHHCCCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECC
Confidence            36689999999999999999999999999999999  9999998875  5889999998854

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>PRK10898 serine endoprotease; Provisional

Probab=97.87  E-value=5.5e-05  Score=74.72  Aligned_cols=58  Identities=28%  Similarity=0.354  Sum_probs=52.1

Q ss_pred             CceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecC
Q psy2827          45 PLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVS  104 (373)
Q Consensus        45 p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~  104 (373)
                      .++.|..|.++|||+++||++||+|++|||+++.+  +.++.+.+..  .|+.+.+++.|..
T Consensus       279 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s--~~~l~~~l~~~~~g~~v~l~v~R~g  338 (353)
T PRK10898        279 QGIVVNEVSPDGPAAKAGIQVNDLIISVNNKPAIS--ALETMDQVAEIRPGSVIPVVVMRDD  338 (353)
T ss_pred             CeEEEEEECCCChHHHcCCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECC
Confidence            46789999999999999999999999999999999  9998888876  5788999998754

>TIGR02860 spore_IV_B stage IV sporulation protein B

Probab=97.86  E-value=7.4e-05  Score=74.20  Aligned_cols=72  Identities=29%  Similarity=0.469  Sum_probs=53.7

Q ss_pred             CCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh-CCCeEEEEEEecCccccccCCCC-CCCCCeeeeeeeec
Q psy2827          55 GGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS-GGDVLSLTVISVSPEEAERLEPP-DDHSGYQQIDYTEK  128 (373)
Q Consensus        55 gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~-~g~~v~l~V~r~~~~~~~~~~~~-~~~~~~~~iGi~~~  128 (373)
                      +|||++|||++||.|++|||.++.+  |+++.+.+++ .++.+.+++.|........+.|. ....+.+.+|+...
T Consensus       123 ~SPAa~AGLq~GDiIvsING~~V~s--~~DL~~iL~~~~g~~V~LtV~R~Ge~~tv~V~Pv~~~~d~~ykLGl~Vr  196 (402)
T TIGR02860       123 HSPGEEAGIQIGDRILKINGEKIKN--MDDLANLINKAGGEKLTLTIERGGKIIETVIKPVKDKEEGRYRIGLYIR  196 (402)
T ss_pred             CCHHHHcCCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCeEEEEEEECCEEEEEEEEEeeeCCCCCEEEEEEEE
Confidence            5899999999999999999999999  9999999988 67899999988654333233221 11123456776543

SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.

>PRK10942 serine endoprotease; Provisional

Probab=97.84  E-value=6.5e-05  Score=76.98  Aligned_cols=59  Identities=27%  Similarity=0.359  Sum_probs=52.9

Q ss_pred             CceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecCc
Q psy2827          45 PLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSP  105 (373)
Q Consensus        45 p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~~  105 (373)
                      .++.|..|.++|||+++||++||+|++|||+++.+  ++++...+..  .++.+.+++.|.+.
T Consensus       311 ~GvlV~~V~~~SpA~~AGL~~GDvIl~InG~~V~s--~~dl~~~l~~~~~g~~v~l~v~R~G~  371 (473)
T PRK10942        311 RGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISS--FAALRAQVGTMPVGSKLTLGLLRDGK  371 (473)
T ss_pred             CceEEEEECCCChHHHcCCCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECCe
Confidence            36789999999999999999999999999999999  9999988876  57889999987653

>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase

Probab=97.82  E-value=4.6e-05  Score=76.14  Aligned_cols=49  Identities=33%  Similarity=0.468  Sum_probs=43.0

Q ss_pred             EEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCeEEEEEE
Q psy2827          49 VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI  101 (373)
Q Consensus        49 V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~~g~~v~l~V~  101 (373)
                      |..|.|+|||+++||++||+|++|||+++.+  |.++...+.  ++.+.++|.
T Consensus         2 I~~V~pgSpAe~AGLe~GD~IlsING~~V~D--w~D~~~~l~--~e~l~L~V~   50 (433)
T TIGR03279         2 ISAVLPGSIAEELGFEPGDALVSINGVAPRD--LIDYQFLCA--DEELELEVL   50 (433)
T ss_pred             cCCcCCCCHHHHcCCCCCCEEEEECCEECCC--HHHHHHHhc--CCcEEEEEE
Confidence            5678999999999999999999999999999  999877774  466888886

Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.

>KOG3606|consensus

Probab=97.82  E-value=5.3e-05  Score=70.11  Aligned_cols=93  Identities=28%  Similarity=0.430  Sum_probs=72.8

Q ss_pred             cEEEEEEcCC--CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHH
Q psy2827           9 PREVQIAKSD--TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQV   85 (373)
Q Consensus         9 ~r~v~l~r~~--~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~   85 (373)
                      -|.|.|+|-+  +++||-|+.+.+-  ...--|+ ...|+++|+...||+-|+.-| |-.+|.+++|||..|.+.+.+++
T Consensus       159 HRRVRL~khG~ekPLGFYIRDG~SV--RVtp~Gl-ekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQV  235 (358)
T KOG3606|consen  159 HRRVRLHKHGSEKPLGFYIRDGTSV--RVTPHGL-EKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQV  235 (358)
T ss_pred             hhheehhhcCCCCCceEEEecCceE--Eeccccc-cccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHH
Confidence            3558888876  5799999876321  1111222 345899999999999999999 67899999999999999999999


Q ss_pred             HHHHHhCCCeEEEEEEecC
Q psy2827          86 VELIKSGGDVLSLTVISVS  104 (373)
Q Consensus        86 ~~~i~~~g~~v~l~V~r~~  104 (373)
                      .+++-.....+.+||....
T Consensus       236 TDMMvANshNLIiTVkPAN  254 (358)
T KOG3606|consen  236 TDMMVANSHNLIITVKPAN  254 (358)
T ss_pred             HHHHhhcccceEEEecccc
Confidence            9998876677888886543

>PRK11186 carboxy-terminal protease; Provisional

Probab=97.77  E-value=4.9e-05  Score=80.41  Aligned_cols=57  Identities=32%  Similarity=0.537  Sum_probs=49.2

Q ss_pred             eEEEEecCCCHHHHc-CCCCCCEEEEEC--CE---EcCCCCHHHHHHHHHh-CCCeEEEEEEec
Q psy2827          47 QHVSAVLAGGAAEKA-GIRKGDRILAVN--NV---NVEGATHKQVVELIKS-GGDVLSLTVISV  103 (373)
Q Consensus        47 ~~V~~V~~gspA~~a-GL~~GD~Il~In--G~---~v~~~s~~~~~~~i~~-~g~~v~l~V~r~  103 (373)
                      +.|..|.|||||+++ ||++||+|++||  |.   .+.+++.++++.+|+. .|..|.|+|.+.
T Consensus       257 ~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~  320 (667)
T PRK11186        257 TVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPA  320 (667)
T ss_pred             EEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeC
Confidence            478999999999998 899999999999  43   4556778899999987 689999999873

>cd06885 PX_SNX17_31 The phosphoinositide binding Phox Homology domain of Sorting Nexins 17 and 31

Probab=97.76  E-value=5.8e-05  Score=61.30  Aligned_cols=69  Identities=39%  Similarity=0.604  Sum_probs=55.0

Q ss_pred             CCcccee-cccccceeeeeeehhhhcccccc------------------------------cchhHHHHHhhcHHHHHHH
Q psy2827         135 IPDYSYV-NTEDESFVVFNIYMAGRHLCSRR------------------------------LTEQQLDSRRRGLEIYLEK  183 (373)
Q Consensus       135 i~~~~~~-~~~~~~~~~~~i~~~g~l~~~~r------------------------------l~i~q~~~rr~gl~~yl~~  183 (373)
                      +|++... +..+..|++|+|+..|...+.+|                              .+..-++.||.||+.||+.
T Consensus         4 I~~~~~~~~~~~~~y~~Y~I~v~~~~~~~rRYseF~~L~~~L~~~~~~~~~p~lP~K~~~~~~~~~ie~Rr~~Le~yL~~   83 (104)
T cd06885           4 IPDTQELSDEGGSTYVAYNIHINGVLHCSVRYSQLHGLNEQLKKEFGNRKLPPFPPKKLLPLTPAQLEERRLQLEKYLQA   83 (104)
T ss_pred             cCCcceeccCCCCcEEEEEEEECCcEEEEechHHHHHHHHHHHHHcCCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHH
Confidence            4444433 33677889998888888777766                              3444459999999999999


Q ss_pred             HhchhhhhhhHHHHHHHHHh
Q psy2827         184 VCAVRVIAESELMQEFLTDA  203 (373)
Q Consensus       184 v~~~~~i~~s~~~~~FL~~~  203 (373)
                      +++++.+.+|..+++||..+
T Consensus        84 l~~~~~l~~s~~~~~FL~~~  103 (104)
T cd06885          84 VVQDPRIANSDIFNSFLLNA  103 (104)
T ss_pred             HhcChhhccCHHHHHHHHhc
Confidence            99999999999999999875

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Members of this subfamily include sorting nexin 17 (SNX17), SNX31, and similar proteins. They contain an N-terminal PX domain followed by a truncated FERM (4.1, ezrin, radixin, and moesin) domain and a unique C-terminal region. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX17 is known to regulate the trafficking and processing of a number of proteins. It binds some me

>KOG3580|consensus

Probab=97.68  E-value=9.4e-05  Score=75.10  Aligned_cols=77  Identities=25%  Similarity=0.432  Sum_probs=63.9

Q ss_pred             EEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHH
Q psy2827          10 REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELI   89 (373)
Q Consensus        10 r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i   89 (373)
                      +.|...|+ +..|+.+.|+.+              -+++|..|.+|+||++-||+.||+|+.||.++..++..++++..+
T Consensus       409 k~VrF~KG-dSvGLRLAGGND--------------VGIFVaGvqegspA~~eGlqEGDQIL~VN~vdF~nl~REeAVlfL  473 (1027)
T KOG3580|consen  409 KMVRFKKG-DSVGLRLAGGND--------------VGIFVAGVQEGSPAEQEGLQEGDQILKVNTVDFRNLVREEAVLFL  473 (1027)
T ss_pred             eeEEeecC-CeeeeEeccCCc--------------eeEEEeecccCCchhhccccccceeEEeccccchhhhHHHHHHHH
Confidence            44555444 678999988743              357899999999999999999999999999999999999999988


Q ss_pred             Hh--CCCeEEEEEE
Q psy2827          90 KS--GGDVLSLTVI  101 (373)
Q Consensus        90 ~~--~g~~v~l~V~  101 (373)
                      -.  +|+.+++.-.
T Consensus       474 L~lPkGEevtilaQ  487 (1027)
T KOG3580|consen  474 LELPKGEEVTILAQ  487 (1027)
T ss_pred             hcCCCCcEEeehhh
Confidence            87  6887776543

>KOG3129|consensus

Probab=97.68  E-value=0.00016  Score=64.71  Aligned_cols=82  Identities=26%  Similarity=0.432  Sum_probs=57.7

Q ss_pred             CCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCC-CHHHHHHHHHh-CCCeEEEEEEecCccccccCCCCCCCCCee
Q psy2827          44 APLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGA-THKQVVELIKS-GGDVLSLTVISVSPEEAERLEPPDDHSGYQ  121 (373)
Q Consensus        44 ~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~-s~~~~~~~i~~-~g~~v~l~V~r~~~~~~~~~~~~~~~~~~~  121 (373)
                      .|-++|.+|.|+|||++|||+.||.|+++.++.-.+. +...+....+. .+..+.++|.|-+......+.| ...++.+
T Consensus       138 ~~Fa~V~sV~~~SPA~~aGl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~v~L~ltP-~~W~GrG  216 (231)
T KOG3129|consen  138 RPFAVVDSVVPGSPADEAGLCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQKVVLSLTP-KKWQGRG  216 (231)
T ss_pred             cceEEEeecCCCChhhhhCcccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCEEEEEeCc-ccccCCc
Confidence            4567899999999999999999999999988776551 12333344444 5889999998866544433333 2345666


Q ss_pred             eeeee
Q psy2827         122 QIDYT  126 (373)
Q Consensus       122 ~iGi~  126 (373)
                      .+|..
T Consensus       217 LLGC~  221 (231)
T KOG3129|consen  217 LLGCN  221 (231)
T ss_pred             ceeee
Confidence            77654

>KOG0606|consensus

Probab=97.56  E-value=0.00018  Score=78.04  Aligned_cols=84  Identities=32%  Similarity=0.515  Sum_probs=69.4

Q ss_pred             EEEEEcCCCCccEEEEecccCCCccccccc--cccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHH
Q psy2827          11 EVQIAKSDTGFGFNVRGQVSEGGQLRSING--ELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVEL   88 (373)
Q Consensus        11 ~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~--~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~   88 (373)
                      .+++.+++.+|||++..-       +...|  +.|.-.-.|.+|.++|||..+|+++||.|+.+||+++..+.|.+++++
T Consensus       629 pI~i~~~~~~yGft~~ai-------rVy~Gd~d~ytvhh~v~sv~egsPA~~agls~~DlIthvnge~v~gl~H~ev~~L  701 (1205)
T KOG0606|consen  629 PITIHFSGKKYGFTLRAI-------RVYMGDKDVYTVHHSVGSVEEGSPAFEAGLSAGDLITHVNGEPVHGLVHTEVMEL  701 (1205)
T ss_pred             ceeeeccccccCceeeeE-------EEecCCcccceeeeeeeeecCCCCccccCCCccceeEeccCcccchhhHHHHHHH
Confidence            489999999999998653       22222  234434468999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEEEEEE
Q psy2827          89 IKSGGDVLSLTVI  101 (373)
Q Consensus        89 i~~~g~~v~l~V~  101 (373)
                      +-+.|..+.+++.
T Consensus       702 ll~~gn~v~~~tt  714 (1205)
T KOG0606|consen  702 LLKSGNKVTLRTT  714 (1205)
T ss_pred             HHhcCCeeEEEee
Confidence            9988888877764

>TIGR00054 RIP metalloprotease RseP

Probab=97.53  E-value=0.00021  Score=72.19  Aligned_cols=58  Identities=24%  Similarity=0.275  Sum_probs=50.1

Q ss_pred             CceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCeEEEEEEecC
Q psy2827          45 PLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVS  104 (373)
Q Consensus        45 p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~~g~~v~l~V~r~~  104 (373)
                      .+..|..|.++|||++||+++||+|+++||.++.+  +.++...+.....++.+++.|..
T Consensus       128 ~g~~V~~V~~~SpA~~AGL~~GDvI~~vng~~v~~--~~dl~~~ia~~~~~v~~~I~r~g  185 (420)
T TIGR00054       128 VGPVIELLDKNSIALEAGIEPGDEILSVNGNKIPG--FKDVRQQIADIAGEPMVEILAER  185 (420)
T ss_pred             CCceeeccCCCCHHHHcCCCCCCEEEEECCEEcCC--HHHHHHHHHhhcccceEEEEEec
Confidence            34579999999999999999999999999999999  99998888773377888887743

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>KOG3571|consensus

Probab=97.52  E-value=0.00029  Score=70.45  Aligned_cols=83  Identities=29%  Similarity=0.456  Sum_probs=66.5

Q ss_pred             EEEEEcCCCC-ccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHH
Q psy2827          11 EVQIAKSDTG-FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVEL   88 (373)
Q Consensus        11 ~v~l~r~~~g-~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~~~   88 (373)
                      +|+|--..-. +|++|.|+....+          .-+++|+++.+||+-+..| +.+||.|++||.+..++++.++++..
T Consensus       252 TV~LnMe~vnfLGiSivgqsn~rg----------DggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrv  321 (626)
T KOG3571|consen  252 TVTLNMETVNFLGISIVGQSNARG----------DGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRV  321 (626)
T ss_pred             EEEecccccccceeEeecccCcCC----------CCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHH
Confidence            4445444444 8999999743321          2467999999999988888 99999999999999999999999999


Q ss_pred             HHh---CCCeEEEEEEec
Q psy2827          89 IKS---GGDVLSLTVISV  103 (373)
Q Consensus        89 i~~---~g~~v~l~V~r~  103 (373)
                      +++   ...+++++|..+
T Consensus       322 LREaV~~~gPi~ltvAk~  339 (626)
T KOG3571|consen  322 LREAVSRPGPIKLTVAKC  339 (626)
T ss_pred             HHHHhccCCCeEEEEeec
Confidence            997   467799998754

>KOG3542|consensus

Probab=97.49  E-value=0.0002  Score=73.68  Aligned_cols=83  Identities=30%  Similarity=0.498  Sum_probs=68.2

Q ss_pred             CCCcEEEEEEcCC--CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHH
Q psy2827           6 QTGPREVQIAKSD--TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHK   83 (373)
Q Consensus         6 ~~~~r~v~l~r~~--~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~   83 (373)
                      -.++|.|.|.|..  .++-|.+.|+.+.            .-+++|..|.||+.|+++|++.||+|++|||+..++.+..
T Consensus       533 KAK~RqviLtk~sre~pl~f~L~GGsEk------------GfgifV~~V~pgskAa~~GlKRgDqilEVNgQnfenis~~  600 (1283)
T KOG3542|consen  533 KAKPRQVILTKASREDPLMFRLVGGSEK------------GFGIFVAEVFPGSKAAREGLKRGDQILEVNGQNFENISAK  600 (1283)
T ss_pred             cccceeEEEecccccCCceeEeccCccc------------cceeEEeeecCCchHHHhhhhhhhhhhhccccchhhhhHH
Confidence            3578999999743  5788998887443            2346899999999999999999999999999999998888


Q ss_pred             HHHHHHHhCCCeEEEEEE
Q psy2827          84 QVVELIKSGGDVLSLTVI  101 (373)
Q Consensus        84 ~~~~~i~~~g~~v~l~V~  101 (373)
                      .+.+++++ +..++++|.
T Consensus       601 KA~eiLrn-nthLtltvK  617 (1283)
T KOG3542|consen  601 KAEEILRN-NTHLTLTVK  617 (1283)
T ss_pred             HHHHHhcC-CceEEEEEe
Confidence            88888876 355677765

>cd01768 RA RA (Ras-associating) ubiquitin domain

Probab=97.28  E-value=0.00069  Score=52.86  Aligned_cols=81  Identities=23%  Similarity=0.293  Sum_probs=62.8

Q ss_pred             EEEEcCC---CceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeecc-ceeeccCcCCCCceeeeccccC-CC
Q psy2827         217 IKILLPD---REVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEY-SFERKLEAKEFPHHLYIQNYST-AS  291 (373)
Q Consensus       217 l~nlLPD---Gg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~-~~~r~l~~~e~p~~~~~~~~~~-~~  291 (373)
                      |.++..|   |...++.+.+..++.++++.++.+.++ .. .-.-|+||..... ...|+|.++|.|+.++ +.+.. ..
T Consensus         2 ikV~~~~~~~~~~kti~V~~~~t~~~Vi~~~l~k~~l-~~-~~~~y~L~ev~~~~~~er~L~~~e~pl~~~-~~~~~~~~   78 (87)
T cd01768           2 LRVYPEDPSGGTYKTLRVSKDTTAQDVIQQLLKKFGL-DD-DPEDYALVEVLGDGGLERLLLPDECPLQIQ-LNAPRQRE   78 (87)
T ss_pred             EEEeCCcCCCccEEEEEECCCCCHHHHHHHHHHHhCC-cC-CcccEEEEEEECCceEEEEeCCCCChHHHH-HhcCCCCC
Confidence            3455555   888899999999999999999999999 33 7789999988764 6899999999998632 23333 23


Q ss_pred             CceEEEEee
Q psy2827         292 ATCLCIRKW  300 (373)
Q Consensus       292 ~~~~~lrk~  300 (373)
                      ..+++|||+
T Consensus        79 ~~~F~lr~~   87 (87)
T cd01768          79 DLRFLLRKR   87 (87)
T ss_pred             cEEEEEecC
Confidence            467888874

The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.

>KOG0609|consensus

Probab=96.91  E-value=0.0039  Score=63.25  Aligned_cols=81  Identities=26%  Similarity=0.505  Sum_probs=68.6

Q ss_pred             CcEEEEEEcC-CCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHH
Q psy2827           8 GPREVQIAKS-DTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQV   85 (373)
Q Consensus         8 ~~r~v~l~r~-~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~   85 (373)
                      ..|.|.+.|. +.++|.+++-...             .+ ++|..+..|+.+++.| |..||.|.+|||..+.+.+..++
T Consensus       122 ~vriv~i~k~~~eplG~Tik~~e~-------------~~-~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~  187 (542)
T KOG0609|consen  122 AVRIVRIVKNTGEPLGATIRVEED-------------TK-VVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEEL  187 (542)
T ss_pred             eeEEEEEeecCCCccceEEEeccC-------------Cc-cEEeeeccCCcchhccceeeccchheecCeecccCCHHHH
Confidence            4677888888 6789999987632             11 3799999999999999 78999999999999999889999


Q ss_pred             HHHHHhCCCeEEEEEEe
Q psy2827          86 VELIKSGGDVLSLTVIS  102 (373)
Q Consensus        86 ~~~i~~~g~~v~l~V~r  102 (373)
                      ..++++....+++.+..
T Consensus       188 q~~l~~~~G~itfkiiP  204 (542)
T KOG0609|consen  188 QELLRNSRGSITFKIIP  204 (542)
T ss_pred             HHHHHhCCCcEEEEEcc
Confidence            99999966888888763

>PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4

Probab=96.91  E-value=0.0016  Score=53.91  Aligned_cols=45  Identities=18%  Similarity=0.249  Sum_probs=38.2

Q ss_pred             ccCChHHHHHHHHHHHHHHhcCCccch-hhHHHHHHHHhccchHHhh
Q psy2827         311 VANDDRVATFMFWMAIDAVDRGQIRAE-DRLYELKALQDASRKHEIT  356 (373)
Q Consensus       311 ~~~d~~a~~~ly~Q~~~dv~~~~~~~~-~~~~~L~~lq~~~~~~~~l  356 (373)
                      +. |+++.+|+|.|++.||.+|.+.++ +...+|+||+-+-.-..|-
T Consensus         5 ~~-d~~~~~lly~Q~~~~vl~g~~~~~~e~a~~LAAl~~q~~~gd~~   50 (126)
T PF00373_consen    5 ID-DPITRHLLYLQARRDVLQGRLPCSEEDAIKLAALQLQAEYGDYN   50 (126)
T ss_dssp             TT-SHHHHHHHHHHHHHHHHTTSSTS-HHHHHHHHHHHHHHHHTSST
T ss_pred             cC-CHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHhcCCC
Confidence            45 899999999999999999999987 8999999999875554444

1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 4DXA_B 2EMS_A 2ZPY_A 1J19_A 2D10_B 2D11_B 1GC6_A 2D2Q_A 2EMT_A 2YVC_A ....

>smart00314 RA Ras association (RalGDS/AF-6) domain

Probab=96.89  E-value=0.0044  Score=48.59  Aligned_cols=75  Identities=24%  Similarity=0.309  Sum_probs=60.0

Q ss_pred             CCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeeccceeeccCcCCCCceeeeccccCCC-CceEEEEe
Q psy2827         222 PDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQNYSTAS-ATCLCIRK  299 (373)
Q Consensus       222 PDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~~~~r~l~~~e~p~~~~~~~~~~~~-~~~~~lrk  299 (373)
                      |++...++.+..+.++.++++.+++++++ ... ...|+||........|+|.+.|+|+.+. .++.... ...+.||+
T Consensus        13 ~~~~~kti~v~~~tTa~~Vi~~~l~k~~l-~~~-~~~y~L~e~~~~~~er~L~~~e~Pl~~~-~~~~~~~~~~~f~lr~   88 (90)
T smart00314       13 PGGTYKTLRVSSRTTARDVIQQLLEKFHL-TDD-PEEYVLVEVLPDGKERVLPDDENPLQLQ-KLWPRRGPNLRFVLRK   88 (90)
T ss_pred             CCCcEEEEEECCCCCHHHHHHHHHHHhCC-CCC-cccEEEEEEeCCcEEEEeCCCCcceEeh-hhCCCCCCcEEEEEEe
Confidence            66999999999999999999999999999 333 7889999998778899999999998732 3333332 34577775

RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)

>KOG3938|consensus

Probab=96.89  E-value=0.0018  Score=60.02  Aligned_cols=86  Identities=23%  Similarity=0.473  Sum_probs=71.2

Q ss_pred             CCCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCC
Q psy2827           3 STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGAT   81 (373)
Q Consensus         3 ~~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s   81 (373)
                      +-+...++.|.+.|+.+.||++|...           |.-   ..+|..+.+||.-.+.. ++.||.|-+|||+.+-++.
T Consensus       121 AHvkGq~kEv~v~KsedalGlTITDN-----------G~G---yAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~R  186 (334)
T KOG3938|consen  121 AHVKGQAKEVEVVKSEDALGLTITDN-----------GAG---YAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKR  186 (334)
T ss_pred             hhhcCcceeEEEEecccccceEEeeC-----------Ccc---eeeeEeecCCchhhhhhheeHHhHHHhhcCccccchh
Confidence            44556788999999999999999865           111   24799999999887766 8999999999999999999


Q ss_pred             HHHHHHHHHh--CCCeEEEEEEe
Q psy2827          82 HKQVVELIKS--GGDVLSLTVIS  102 (373)
Q Consensus        82 ~~~~~~~i~~--~g~~v~l~V~r  102 (373)
                      |.++..++++  .|++.++.+..
T Consensus       187 HYeVArmLKel~rge~ftlrLie  209 (334)
T KOG3938|consen  187 HYEVARMLKELPRGETFTLRLIE  209 (334)
T ss_pred             HHHHHHHHHhcccCCeeEEEeec
Confidence            9999999998  57877776653

>KOG3605|consensus

Probab=96.88  E-value=0.0013  Score=67.77  Aligned_cols=69  Identities=32%  Similarity=0.620  Sum_probs=57.2

Q ss_pred             CCCCcE-EEEEEcCCC--CccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCC
Q psy2827           5 QQTGPR-EVQIAKSDT--GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGAT   81 (373)
Q Consensus         5 ~~~~~r-~v~l~r~~~--g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s   81 (373)
                      +++.|. +|.|.|-..  -+||++..+                   +|-++..|+-|++.|++.|.+|++|||+.|-..+
T Consensus       732 V~cpPV~~V~I~RPd~kyQLGFSVQNG-------------------iICSLlRGGIAERGGVRVGHRIIEINgQSVVA~p  792 (829)
T KOG3605|consen  732 VSCPPVTTVLIRRPDLRYQLGFSVQNG-------------------IICSLLRGGIAERGGVRVGHRIIEINGQSVVATP  792 (829)
T ss_pred             ecCCCceEEEeecccchhhccceeeCc-------------------EeehhhcccchhccCceeeeeEEEECCceEEecc
Confidence            445554 455555543  489999776                   6889999999999999999999999999998888


Q ss_pred             HHHHHHHHHhC
Q psy2827          82 HKQVVELIKSG   92 (373)
Q Consensus        82 ~~~~~~~i~~~   92 (373)
                      |+.+++++.++
T Consensus       793 HekIV~lLs~a  803 (829)
T KOG3605|consen  793 HEKIVQLLSNA  803 (829)
T ss_pred             HHHHHHHHHHh
Confidence            99999999885

>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []

Probab=96.84  E-value=0.0032  Score=49.31  Aligned_cols=83  Identities=23%  Similarity=0.246  Sum_probs=64.6

Q ss_pred             eEEEEEcCCCc----eEEEEEEecCCHHHHHHHhccccCCCchhhhchhhee-eeeccceeeccCcCCCCceeeeccccC
Q psy2827         215 VDIKILLPDRE----VITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLF-EIVEYSFERKLEAKEFPHHLYIQNYST  289 (373)
Q Consensus       215 l~l~nlLPDGg----~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf-~~~~~~~~r~l~~~e~p~~~~~~~~~~  289 (373)
                      -.|.++.+|+.    ..++.+-...++.++++.++.+.++  .....-|+|+ .....+..|.|.++|+|+.+. ..+..
T Consensus         3 ~~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l--~~~~~~y~L~~~~~~~~~er~L~~~E~pl~i~-~~~~~   79 (93)
T PF00788_consen    3 GVLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGL--AEDPSDYCLVEVEESGGEERPLDDDECPLQIQ-LQWPK   79 (93)
T ss_dssp             EEEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTT--SSSGGGEEEEEEECTTTEEEEETTTSBHHHHH-HTTSS
T ss_pred             eEEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCC--CCCCCCEEEEEEEcCCCEEEEcCCCCchHHHH-HhCcc
Confidence            46788888888    8899999999999999999999999  4555667887 445678899999999998733 33333


Q ss_pred             CC-CceEEEEee
Q psy2827         290 AS-ATCLCIRKW  300 (373)
Q Consensus       290 ~~-~~~~~lrk~  300 (373)
                      .. ..+++||+.
T Consensus        80 ~~~~~~f~lr~~   91 (93)
T PF00788_consen   80 DSQNSRFVLRRK   91 (93)
T ss_dssp             GTTTEEEEEEEC
T ss_pred             ccCceEEEEEEc
Confidence            22 456888874

This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.77  E-value=0.0054  Score=60.33  Aligned_cols=59  Identities=36%  Similarity=0.441  Sum_probs=52.9

Q ss_pred             CceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecCc
Q psy2827          45 PLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSP  105 (373)
Q Consensus        45 p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~~  105 (373)
                      .++.|..|.+++||+++|++.||.|+++||.++.+  ..++...+..  .|..+.+++.|.+.
T Consensus       270 ~G~~V~~v~~~spa~~agi~~Gdii~~vng~~v~~--~~~l~~~v~~~~~g~~v~~~~~r~g~  330 (347)
T COG0265         270 AGAVVLGVLPGSPAAKAGIKAGDIITAVNGKPVAS--LSDLVAAVASNRPGDEVALKLLRGGK  330 (347)
T ss_pred             CceEEEecCCCChHHHcCCCCCCEEEEECCEEccC--HHHHHHHHhccCCCCEEEEEEEECCE
Confidence            45689999999999999999999999999999999  8999888877  48899999988643

>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A

Probab=96.73  E-value=0.0037  Score=49.09  Aligned_cols=47  Identities=30%  Similarity=0.442  Sum_probs=34.4

Q ss_pred             CCHHHHcC--CCCCCEEEEECCEEcCCCCHHHHHHHHHh-CCCeEEEEEEec
Q psy2827          55 GGAAEKAG--IRKGDRILAVNNVNVEGATHKQVVELIKS-GGDVLSLTVISV  103 (373)
Q Consensus        55 gspA~~aG--L~~GD~Il~InG~~v~~~s~~~~~~~i~~-~g~~v~l~V~r~  103 (373)
                      .||-.+.|  +++||.|++|||+++..  -.++..++.. +|+.+.|+|.+.
T Consensus        30 ~sPL~~pGv~v~~GD~I~aInG~~v~~--~~~~~~lL~~~agk~V~Ltv~~~   79 (88)
T PF14685_consen   30 RSPLAQPGVDVREGDYILAINGQPVTA--DANPYRLLEGKAGKQVLLTVNRK   79 (88)
T ss_dssp             B-GGGGGS----TT-EEEEETTEE-BT--TB-HHHHHHTTTTSEEEEEEE-S
T ss_pred             cCCccCCCCCCCCCCEEEEECCEECCC--CCCHHHHhcccCCCEEEEEEecC
Confidence            47888888  56999999999999987  5677788887 799999999864

>cd06862 PX_SNX9_18_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 9 and 18

Probab=96.64  E-value=0.0029  Score=53.12  Aligned_cols=38  Identities=29%  Similarity=0.587  Sum_probs=34.0

Q ss_pred             chhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHHh
Q psy2827         166 TEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDA  203 (373)
Q Consensus       166 ~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~~  203 (373)
                      +.+-++.||.||+.||+.++++|.+.+|..+++||..-
T Consensus        70 ~~~fie~Rr~~Le~fL~~I~~~p~l~~s~~~~~FL~~~  107 (125)
T cd06862          70 EEDFIEKRRERLELWMNRLARHPVLSQSEVFRHFLTCT  107 (125)
T ss_pred             CHHHHHHHHHHHHHHHHHHhcCHhhhcChHHHHHcCCc
Confidence            44456899999999999999999999999999999764

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX9, SNX18, and similar proteins. They contain an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is loca

>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]

Probab=96.49  E-value=0.0082  Score=57.33  Aligned_cols=79  Identities=19%  Similarity=0.253  Sum_probs=58.8

Q ss_pred             ceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEe-cCccc--cccCCCCCCCCCe
Q psy2827          46 LQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVIS-VSPEE--AERLEPPDDHSGY  120 (373)
Q Consensus        46 ~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r-~~~~~--~~~~~~~~~~~~~  120 (373)
                      ++++..|..++|+. .-|..||.|++|||+++.+  .+++.+++++  .|+.+++++.| .++..  ..++... +..+.
T Consensus       131 gvyv~~v~~~~~~~-gkl~~gD~i~avdg~~f~s--~~e~i~~v~~~k~Gd~VtI~~~r~~~~~~~~~~tl~~~-~~~g~  206 (342)
T COG3480         131 GVYVLSVIDNSPFK-GKLEAGDTIIAVDGEPFTS--SDELIDYVSSKKPGDEVTIDYERHNETPEIVTITLIKN-DDNGK  206 (342)
T ss_pred             eEEEEEccCCcchh-ceeccCCeEEeeCCeecCC--HHHHHHHHhccCCCCeEEEEEEeccCCCceEEEEEEee-ccCCc
Confidence            45688888899986 3399999999999999999  9999999987  69999999986 33322  2222222 23455


Q ss_pred             eeeeeeec
Q psy2827         121 QQIDYTEK  128 (373)
Q Consensus       121 ~~iGi~~~  128 (373)
                      ..||++..
T Consensus       207 ~giGIsl~  214 (342)
T COG3480         207 AGIGISLV  214 (342)
T ss_pred             ceeeeEee
Confidence            67888753

>cd07301 PX_SNX21 The phosphoinositide binding Phox Homology domain of Sorting Nexin 21

Probab=96.42  E-value=0.0059  Score=50.21  Aligned_cols=37  Identities=22%  Similarity=0.388  Sum_probs=33.5

Q ss_pred             cchhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827         165 LTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT  201 (373)
Q Consensus       165 l~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~  201 (373)
                      .+...++.||.||+.||+.+++++.+.+|..+++||.
T Consensus        74 ~~~~~ie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~  110 (112)
T cd07301          74 FTAETIAKRSRAFEQFLCHLHSLPELRASPAFLEFFY  110 (112)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcCHHHhcChHHHHHhC
Confidence            4555669999999999999999999999999999985

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX21, also called SNX-L, is distinctly and highly-expressed in fetal liver and may be involved in protein sorting and degradation during embryonic liver development.

>cd07279 PX_SNX20_21_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21

Probab=96.38  E-value=0.0063  Score=49.98  Aligned_cols=37  Identities=19%  Similarity=0.472  Sum_probs=33.3

Q ss_pred             cchhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827         165 LTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT  201 (373)
Q Consensus       165 l~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~  201 (373)
                      .+..-+++|+.||+.||+.++++|.+.+|..+++||.
T Consensus        74 ~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~  110 (112)
T cd07279          74 FSSELIAERSRAFEQFLGHILSIPNLRDSKAFLDFLQ  110 (112)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhCCHhhhcChHHHHHhC
Confidence            3555669999999999999999999999999999985

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX20, SNX21, and similar proteins. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. It may function in the sorting and cycling of PSGL-1 into endosomes. SNX21, also cal

>KOG3530|consensus

Probab=96.31  E-value=0.019  Score=58.92  Aligned_cols=144  Identities=17%  Similarity=0.119  Sum_probs=108.9

Q ss_pred             ccceEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeeccceeeccCcCCCCceeeeccccCCC
Q psy2827         212 SSPVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQNYSTAS  291 (373)
Q Consensus       212 ~~~l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~~~~r~l~~~e~p~~~~~~~~~~~~  291 (373)
                      ...+--.++|-||..+++.+-+...-...++.++..+.|   .=.-||+|--.- ..-.+.++|.--|..   ..-...+
T Consensus         8 k~~~~C~V~LLd~sdl~~~~pk~akGq~Lld~V~~~ldl---~E~DYFGLry~D-~~~~~hWLD~tK~I~---kqvK~gp   80 (616)
T KOG3530|consen    8 KKDVYCRVLLLDGSDLSINFPKTAKGQELLDYVFYHLDL---IEKDYFGLRYQD-SSKVRHWLDPTKSIK---KQVKIGP   80 (616)
T ss_pred             CcceEEEEEEecCccceeccCcccchHHHHHHHHHhhce---eeeeccceeeec-hhhcceecCcchhHH---HHhccCC
Confidence            344778889999999999988888889999999999977   666778775432 223455555555522   1112223


Q ss_pred             CceEEEEeeccCChhhhhcccCChHHHHHHHHHHHHHHhcCCccch-hhHHHHHHHHhccchHHhhhhccCCCcc
Q psy2827         292 ATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRAE-DRLYELKALQDASRKHEITTGSCNPNRA  365 (373)
Q Consensus       292 ~~~~~lrk~~~~~~~~~~l~~~d~~a~~~ly~Q~~~dv~~~~~~~~-~~~~~L~~lq~~~~~~~~l~l~~~~~~~  365 (373)
                      ..++.||.-|| |+++..|.+  +.+--.+|.|--.||..|++.|. +.+.+|.||--|.---+|=+--|-|+|.
T Consensus        81 pytL~~rVKfY-~sdP~~Lre--e~tRYqfflQlKqDll~GRL~Cp~~~AaeLaAl~lQsELGDYn~~~Ht~~yV  152 (616)
T KOG3530|consen   81 PYTLHLRVKFY-PSDPNNLRE--ENTRYQFFLQLKQDLLSGRLYCPFETAAELAALILQSELGDYNEEEHTGGYV  152 (616)
T ss_pred             CeEEEEEEEec-cCChhhhhc--hhhHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhcCCChhhccccce
Confidence            45788998888 888887766  88888999999999999999987 9999999998887777776666666654

>cd07300 PX_SNX20 The phosphoinositide binding Phox Homology domain of Sorting Nexin 20

Probab=96.31  E-value=0.007  Score=49.96  Aligned_cols=38  Identities=32%  Similarity=0.555  Sum_probs=33.7

Q ss_pred             cchhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHH
Q psy2827         165 LTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTD  202 (373)
Q Consensus       165 l~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~  202 (373)
                      .+.+-+++||.||+.||+.+++.+.+.+|..+++||..
T Consensus        74 ~~~~~ie~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~  111 (114)
T cd07300          74 FSEEIIAERRVALRDYLTLLYSLRFVRRSQAFQDFLTH  111 (114)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcCHhhhcChHHHHHhCC
Confidence            45555699999999999999999999999999999864

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. The PX dom

>cd06867 PX_SNX41_42 The phosphoinositide binding Phox Homology domain of fungal Sorting Nexins 41 and 42

Probab=96.29  E-value=0.0057  Score=50.21  Aligned_cols=33  Identities=21%  Similarity=0.463  Sum_probs=30.7

Q ss_pred             HHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827         169 QLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT  201 (373)
Q Consensus       169 q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~  201 (373)
                      -++.||.||+.||+.+++++.+.+|+.+++||.
T Consensus        78 ~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~  110 (112)
T cd06867          78 IIERRKRMLQRFLNRCLQHPILRNDIVFQKFLD  110 (112)
T ss_pred             HHHHHHHHHHHHHHHHhcChhhccCcHHHHhcC
Confidence            349999999999999999999999999999984

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX41 and SNX42 (also called Atg20p) form dimers with SNX4, and are required in protein recycling from the sorting endosome (post-Golgi endosome) back

>cd06870 PX_CISK The phosphoinositide binding Phox Homology Domain of Cytokine-Independent Survival Kinase

Probab=95.89  E-value=0.014  Score=47.65  Aligned_cols=37  Identities=16%  Similarity=0.355  Sum_probs=32.7

Q ss_pred             chhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHH
Q psy2827         166 TEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTD  202 (373)
Q Consensus       166 ~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~  202 (373)
                      +..-++.||.||+.||+.+++++.+.+|+.+++||..
T Consensus        72 ~~~~ie~Rr~~Le~fL~~ll~~p~l~~s~~~~~FL~~  108 (109)
T cd06870          72 DPDFIKQRRAGLDEFIQRLVSDPKLLNHPDVRAFLQM  108 (109)
T ss_pred             CHHHHHHHHHHHHHHHHHHhCCHhhhcChHHHHHhCc
Confidence            3444599999999999999999999999999999853

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Cytokine-independent survival kinase (CISK), also called Serum- and Glucocorticoid-induced Kinase 3 (SGK3), plays a role in cell growth and survival. It is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. CISK/SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. N-terminal to a catalytic kinase domain, CISK contains a PX domain which binds highly phosphorylated PIs, directs membrane localization, and regulates the enzyme's activity.

>cd06877 PX_SNX14 The phosphoinositide binding Phox Homology domain of Sorting Nexin 14

Probab=95.75  E-value=0.012  Score=49.04  Aligned_cols=37  Identities=30%  Similarity=0.433  Sum_probs=33.0

Q ss_pred             cchhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827         165 LTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT  201 (373)
Q Consensus       165 l~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~  201 (373)
                      .+..-+++||.||+.||+.+++++.+.+|+.+.+||.
T Consensus        81 ~~~~~ie~Rr~~Le~fL~~ll~~~~l~~s~~~~~FL~  117 (119)
T cd06877          81 KSYEFLESKREIFEEFLQKLLQKPELRGSELLYDFLS  117 (119)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhCCcccccCHHHHHhCC
Confidence            4445569999999999999999999999999999984

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX14 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. It is expressed in the embryonic nervous system of mice, and is co-expressed in the motoneurons and the anterior pituary with Islet-1. SNX14 shows a similar domain architecture as SNX13, containing an N

>PRK09681 putative type II secretion protein GspC; Provisional

Probab=95.71  E-value=0.027  Score=53.48  Aligned_cols=54  Identities=24%  Similarity=0.463  Sum_probs=44.1

Q ss_pred             EecCCCH---HHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecCcc
Q psy2827          51 AVLAGGA---AEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSPE  106 (373)
Q Consensus        51 ~V~~gsp---A~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~~~  106 (373)
                      .+.||..   -.++||++||.+++|||.++.+  .++..++++.  ....++++|+|.+..
T Consensus       210 rl~Pgkd~~lF~~~GLq~GDva~sING~dL~D--~~qa~~l~~~L~~~tei~ltVeRdGq~  268 (276)
T PRK09681        210 AVKPGADRSLFDASGFKEGDIAIALNQQDFTD--PRAMIALMRQLPSMDSIQLTVLRKGAR  268 (276)
T ss_pred             EECCCCcHHHHHHcCCCCCCEEEEeCCeeCCC--HHHHHHHHHHhccCCeEEEEEEECCEE
Confidence            4566643   3678999999999999999998  8888888876  468899999997653

>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]

Probab=95.53  E-value=0.029  Score=57.13  Aligned_cols=48  Identities=29%  Similarity=0.535  Sum_probs=36.0

Q ss_pred             eEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCeEEEEEEe
Q psy2827          47 QHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVIS  102 (373)
Q Consensus        47 ~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~~g~~v~l~V~r  102 (373)
                      ..|..|.++|||..|||.+||+|++|||..-.   +.+     -+.++.+.+++.+
T Consensus       464 ~~i~~V~~~gPA~~AGl~~Gd~ivai~G~s~~---l~~-----~~~~d~i~v~~~~  511 (558)
T COG3975         464 EKITFVFPGGPAYKAGLSPGDKIVAINGISDQ---LDR-----YKVNDKIQVHVFR  511 (558)
T ss_pred             eEEEecCCCChhHhccCCCccEEEEEcCcccc---ccc-----cccccceEEEEcc
Confidence            36899999999999999999999999999110   111     0256777777654

>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain

Probab=95.46  E-value=0.041  Score=41.85  Aligned_cols=79  Identities=20%  Similarity=0.143  Sum_probs=52.8

Q ss_pred             EEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeeccceeeccCcCCCCceeeeccccCCCCceEEEE
Q psy2827         219 ILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQNYSTASATCLCIR  298 (373)
Q Consensus       219 nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~~~~r~l~~~e~p~~~~~~~~~~~~~~~~~lr  298 (373)
                      +.||||..+.+++....+..+.++.++.++|+   .-..||+|+.....+-.....+.+.|..-  |.........+.||
T Consensus         1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l---~e~~~FgL~~~~~~~~~~~wL~~~k~l~~--q~~~~~~~~~l~fr   75 (80)
T PF09379_consen    1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGL---KEKEYFGLQYQVDKDGEHHWLDLDKKLKK--QLKKNNPPFTLYFR   75 (80)
T ss_dssp             EEESSEEEEEEEEETTSBHHHHHHHHHHHHTT---SSGGGEEEEE-EBTTSSEEEE-SSSBGGG--STBTSSSSEEEEEE
T ss_pred             CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCC---CCccEEEEEEeecCCCcceeccCcccHHH--HcCCCCCCEEEEEE
Confidence            46899999999999999999999999999999   45678888882222223344455555321  22121223458888


Q ss_pred             eecc
Q psy2827         299 KWLF  302 (373)
Q Consensus       299 k~~~  302 (373)
                      +-||
T Consensus        76 vkfy   79 (80)
T PF09379_consen   76 VKFY   79 (80)
T ss_dssp             ESS-
T ss_pred             EEEC
Confidence            8776

The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....

>cd06872 PX_SNX19_like_plant The phosphoinositide binding Phox Homology domain of uncharacterized SNX19-like plant proteins

Probab=95.42  E-value=0.016  Score=47.24  Aligned_cols=35  Identities=26%  Similarity=0.417  Sum_probs=32.2

Q ss_pred             hhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827         167 EQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT  201 (373)
Q Consensus       167 i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~  201 (373)
                      ...+++|+.||+.||+.+++.|.|++|+.+++||.
T Consensus        71 ~~fie~Rr~~Le~yL~~l~~~p~i~~s~~~~~FL~  105 (107)
T cd06872          71 GAFIEERCKLLDKYLKDLLVIEKVAESHEVWSFLS  105 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChhhhcCHHHHHHhc
Confidence            44569999999999999999999999999999985

The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized plant proteins containing an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some sorting nexins (SNXs). This is the same domain architecture found in SNX19. SNX13 and SNX14 also contain these three domains but also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction dom

>cd07280 PX_YPT35 The phosphoinositide binding Phox Homology domain of the fungal protein YPT35

Probab=95.41  E-value=0.031  Score=46.41  Aligned_cols=35  Identities=37%  Similarity=0.568  Sum_probs=31.7

Q ss_pred             hhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827         167 EQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT  201 (373)
Q Consensus       167 i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~  201 (373)
                      ..-++.|+.+|+.||+.+++.+.+.+|..+++||.
T Consensus        85 ~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~  119 (120)
T cd07280          85 KAWLEKRRRGLQYFLNCVLLNPVFGGSPVVKEFLL  119 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHhhccChHHHHhhC
Confidence            44459999999999999999999999999999984

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of YPT35 proteins from the fungal subkingdom Dikarya. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of YPT35 binds to phosphatidylinositol 3-phosphate (PI3P). It also serves as a protein interaction domain, binding to members of the Yip1p protein family, which localize to the ER and Golgi. YPT35 is mainly associated with endosomes and together with Yip1p proteins, may be involved in a specific function in the endocytic pathway.

>cd06861 PX_Vps5p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps5p

Probab=95.36  E-value=0.02  Score=46.96  Aligned_cols=36  Identities=25%  Similarity=0.395  Sum_probs=32.2

Q ss_pred             chhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827         166 TEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT  201 (373)
Q Consensus       166 ~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~  201 (373)
                      +..-++.||.||+.||+.++++|.+.+|..+++||.
T Consensus        75 ~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~  110 (112)
T cd06861          75 DDNFVEQRRAALEKMLRKIANHPVLQKDPDFRLFLE  110 (112)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCcccccCcHHHHhcC
Confidence            344459999999999999999999999999999985

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. The PX domain of Vps5p binds phosphatidylinositol-3-phosphate (PI3P

>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]

Probab=95.17  E-value=0.098  Score=48.17  Aligned_cols=50  Identities=28%  Similarity=0.460  Sum_probs=42.2

Q ss_pred             CCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecCcc
Q psy2827          55 GGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSPE  106 (373)
Q Consensus        55 gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~~~  106 (373)
                      ++.-+..||+.||..+++|+..+.+  .+++..+++.  .-..+.+||+|.+..
T Consensus       217 ~slF~~sglq~GDIavaiNnldltd--p~~m~~llq~l~~m~s~qlTv~R~G~r  268 (275)
T COG3031         217 GSLFYKSGLQRGDIAVAINNLDLTD--PEDMFRLLQMLRNMPSLQLTVIRRGKR  268 (275)
T ss_pred             cchhhhhcCCCcceEEEecCcccCC--HHHHHHHHHhhhcCcceEEEEEecCcc
Confidence            4556778999999999999999999  8999888887  457899999986653

>KOG3532|consensus

Probab=95.00  E-value=0.062  Score=56.02  Aligned_cols=53  Identities=28%  Similarity=0.424  Sum_probs=44.0

Q ss_pred             eEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCeEEEEEE
Q psy2827          47 QHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI  101 (373)
Q Consensus        47 ~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~~g~~v~l~V~  101 (373)
                      +.|..|.+++||.++.+++||.+++|||++|.+  ..++...++.....+...++
T Consensus       400 v~v~tv~~ns~a~k~~~~~gdvlvai~~~pi~s--~~q~~~~~~s~~~~~~~l~~  452 (1051)
T KOG3532|consen  400 VKVCTVEDNSLADKAAFKPGDVLVAINNVPIRS--ERQATRFLQSTTGDLTVLVE  452 (1051)
T ss_pred             EEEEEecCCChhhHhcCCCcceEEEecCccchh--HHHHHHHHHhcccceEEEEe
Confidence            457899999999999999999999999999998  88999999984333333333

>cd06866 PX_SNX8_Mvp1p_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p

Probab=94.99  E-value=0.032  Score=45.32  Aligned_cols=35  Identities=43%  Similarity=0.701  Sum_probs=31.6

Q ss_pred             hhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827         167 EQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT  201 (373)
Q Consensus       167 i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~  201 (373)
                      ..-+++||.||+.||+.++++|.+.+|..+++||.
T Consensus        69 ~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~  103 (105)
T cd06866          69 REFLEARRRGLSRFLNLVARHPVLSEDELVRTFLT  103 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChhhccChHHHhhcC
Confidence            33458999999999999999999999999999985

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles.

>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7

Probab=94.77  E-value=0.051  Score=42.18  Aligned_cols=82  Identities=22%  Similarity=0.264  Sum_probs=65.9

Q ss_pred             ceEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeee-ccceeeccCcCCCCceeeeccccCCCC
Q psy2827         214 PVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIV-EYSFERKLEAKEFPHHLYIQNYSTASA  292 (373)
Q Consensus       214 ~l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~-~~~~~r~l~~~e~p~~~~~~~~~~~~~  292 (373)
                      .+-+.++++||...++++..+-++.++.+.++.+.++   ..-...+|+.-. +..++|-+.|+|..-. +.+.+...+.
T Consensus         2 k~vvkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~---~~~~~W~LvE~~P~l~lER~~EDHE~vvd-vl~~W~~~~~   77 (85)
T cd01787           2 KQVVKVYSEDGASKSLEVDERMTARDVCQLLVDKNHC---QDDSSWTLVEHLPHLQLERLFEDHELVVE-VLSTWHSAGN   77 (85)
T ss_pred             ceEEEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCC---CCCCCeEEEEecchhhhhhhccchHHHHH-HHHhcccCCC
Confidence            3678999999999999999999999999999999998   445566777665 4678999999998754 3455555455


Q ss_pred             ceEEEEe
Q psy2827         293 TCLCIRK  299 (373)
Q Consensus       293 ~~~~lrk  299 (373)
                      +.+.|||
T Consensus        78 n~l~f~k   84 (85)
T cd01787          78 SVLFFRK   84 (85)
T ss_pred             cEEEEec
Confidence            6688887

Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.

>cd06893 PX_SNX19 The phosphoinositide binding Phox Homology domain of Sorting Nexin 19

Probab=94.72  E-value=0.029  Score=47.52  Aligned_cols=35  Identities=37%  Similarity=0.680  Sum_probs=32.1

Q ss_pred             hHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHH
Q psy2827         168 QQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTD  202 (373)
Q Consensus       168 ~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~  202 (373)
                      .-+++||.||+.||+.+++.+.+.+|+.+++||..
T Consensus        97 ~fie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~  131 (132)
T cd06893          97 DKIEARRGLLETFLRQLCSIPEISNSEEVQEFLAY  131 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHcCHhhhcCHHHHHHHcc
Confidence            34599999999999999999999999999999964

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX19 contains an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. These domains are also found in SNX13 and SNX14, which also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNX19 interacts with IA-2, a major autoantigen found

>cd01784 rasfadin_RA Ubiquitin-like domain of Rasfadin

Probab=94.52  E-value=0.11  Score=40.37  Aligned_cols=61  Identities=25%  Similarity=0.390  Sum_probs=53.1

Q ss_pred             EEcCC-CceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeeccceeeccCcCCCCce
Q psy2827         219 ILLPD-REVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHH  281 (373)
Q Consensus       219 nlLPD-Gg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~~~~r~l~~~e~p~~  281 (373)
                      .++|- |..-.+.+.+..++.+|++.+.++.-..  ..-.-|+||...+.+-.|||.+.|+|..
T Consensus         6 ~f~P~~gs~~~v~VsS~~tt~eVI~~LL~KFkv~--~~p~~FALy~vh~~Ge~rkL~d~E~PL~   67 (87)
T cd01784           6 VFTPAYGSVTNVRINSTMTTPQVLKLLLNKFKIE--NSAEEFALYIVHTSGEKRKLKATDYPLI   67 (87)
T ss_pred             EeCCCCCceeEEEEecCCCHHHHHHHHHHhcccc--CCHHHeEEEEEeeCCCEEECCCcCCCee
Confidence            57886 7777899999999999999999998773  6668899999988888999999999964

rasfadin_RA Rasfadin (RASSF2) belongs to a family of Ras effectors/tumor suppressors that includes RASSF1 and NORE1. RASSF2 binds directly to K-Ras in a GTP-dependent manner via its RA (RAS-associated) domain. RASSF2 promotes apoptosis and cell cycle arrest and is frequently down-regulated in lung tumor cell lines

>KOG1421|consensus

Probab=94.43  E-value=0.095  Score=54.83  Aligned_cols=55  Identities=31%  Similarity=0.447  Sum_probs=48.8

Q ss_pred             EEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh-CCCeEEEEEEecCc
Q psy2827          48 HVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS-GGDVLSLTVISVSP  105 (373)
Q Consensus        48 ~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~-~g~~v~l~V~r~~~  105 (373)
                      +|..|.++|||++. |++||.+++||+..+.+  +.++.+++.+ .|+.+.|+|.|.+.
T Consensus       306 vV~~vL~~gpa~k~-Le~GDillavN~t~l~d--f~~l~~iLDegvgk~l~LtI~Rggq  361 (955)
T KOG1421|consen  306 VVETVLPEGPAEKK-LEPGDILLAVNSTCLND--FEALEQILDEGVGKNLELTIQRGGQ  361 (955)
T ss_pred             EEEEeccCCchhhc-cCCCcEEEEEcceehHH--HHHHHHHHhhccCceEEEEEEeCCE
Confidence            68899999999955 99999999999999988  8888888877 69999999998654

>KOG1320|consensus

Probab=94.41  E-value=0.098  Score=53.18  Aligned_cols=54  Identities=31%  Similarity=0.426  Sum_probs=45.8

Q ss_pred             ceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhC--CCeEEEEEE
Q psy2827          46 LQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSG--GDVLSLTVI  101 (373)
Q Consensus        46 ~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~~--g~~v~l~V~  101 (373)
                      ++.+..|.+++++..+++.+||+|.+|||++|.+  ..++..+++.+  ++.+.+...
T Consensus       399 ~v~is~Vlp~~~~~~~~~~~g~~V~~vng~~V~n--~~~l~~~i~~~~~~~~v~vl~~  454 (473)
T KOG1320|consen  399 LVLVSQVLPGSINGGYGLKPGDQVVKVNGKPVKN--LKHLYELIEECSTEDKVAVLDR  454 (473)
T ss_pred             EEEEEEeccCCCcccccccCCCEEEEECCEEeec--hHHHHHHHHhcCcCceEEEEEe
Confidence            4578899999999999999999999999999999  89999999984  334544443

>cd07281 PX_SNX1 The phosphoinositide binding Phox Homology domain of Sorting Nexin 1

Probab=94.38  E-value=0.031  Score=46.73  Aligned_cols=32  Identities=31%  Similarity=0.567  Sum_probs=30.5

Q ss_pred             HHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827         170 LDSRRRGLEIYLEKVCAVRVIAESELMQEFLT  201 (373)
Q Consensus       170 ~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~  201 (373)
                      ++.||.||+.||+.++++|.+.+|..+++||.
T Consensus        91 ie~Rr~~Le~FL~~l~~~p~l~~s~~~~~FL~  122 (124)
T cd07281          91 LERRRAALERYLQRIVSHPSLLQDPDVREFLE  122 (124)
T ss_pred             HHHHHHHHHHHHHHHhcCcccccChHHHHHhC
Confidence            48999999999999999999999999999985

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX1 is both membrane associated and a cytosolic protein that exists as a tetramer in protein complexes. It can associate reversibly with membranes of the endosomal compartment, thereby coating these vesicles. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval

>cd06873 PX_SNX13 The phosphoinositide binding Phox Homology domain of Sorting Nexin 13

Probab=94.34  E-value=0.082  Score=43.93  Aligned_cols=38  Identities=29%  Similarity=0.434  Sum_probs=31.8

Q ss_pred             cchhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHH
Q psy2827         165 LTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTD  202 (373)
Q Consensus       165 l~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~  202 (373)
                      .+..-++.|+.||+.||+.+.+++.++++..+++++..
T Consensus        78 ~~~~~ie~Rr~~Le~fL~~ll~~~~l~~~~~~~~~l~~  115 (120)
T cd06873          78 LDRAFLEKRRKMLNQYLQSLLNPEVLDANPGLQEIVLD  115 (120)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhCCHhhccCHHHHHHHHH
Confidence            44556699999999999999999999999777766654

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX13, also called RGS-PX1, contains an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some SNXs. It specifically binds to the stimulatory subunit of the heterotrimeric G protein G(alpha)s, serving as its GTPase activating protein, throug

>cd06898 PX_SNX10 The phosphoinositide binding Phox Homology domain of Sorting Nexin 10

Probab=94.22  E-value=0.036  Score=45.62  Aligned_cols=34  Identities=26%  Similarity=0.484  Sum_probs=31.3

Q ss_pred             hHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827         168 QQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT  201 (373)
Q Consensus       168 ~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~  201 (373)
                      .-++.||.||+.||+.++++|.+.+|+.++.||.
T Consensus        78 ~fie~Rr~~L~~fL~~i~~~p~l~~s~~l~~FL~  111 (113)
T cd06898          78 GFIEERQQGLQDFLEKVLQTPLLLSDSRLHLFLQ  111 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHcChhhccChHHHHhcc
Confidence            3459999999999999999999999999999985

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX10 may be involved in the regulation of endosome homeostasis. Its expression induces the formation of giant vacuoles in mammalian cells.

>cd06879 PX_UP1_plant The phosphoinositide binding Phox Homology domain of uncharacterized plant proteins

Probab=94.17  E-value=0.045  Score=46.53  Aligned_cols=35  Identities=26%  Similarity=0.364  Sum_probs=32.1

Q ss_pred             hhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827         167 EQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT  201 (373)
Q Consensus       167 i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~  201 (373)
                      .+-+++||.||+.||+++.+++.+.+|..+++||.
T Consensus       102 ~~fiEeRR~gLE~fLq~Ll~~p~l~~s~~v~~FLe  136 (138)
T cd06879         102 RALLEERRHSLEEWMGKLLSDIDLSRSVPVASFLE  136 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCccccCCHHHHHHhC
Confidence            44569999999999999999999999999999985

The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.

>cd07295 PX_Grd19 The phosphoinositide binding Phox Homology domain of fungal Grd19

Probab=94.05  E-value=0.051  Score=44.93  Aligned_cols=37  Identities=30%  Similarity=0.668  Sum_probs=32.3

Q ss_pred             chhHHHHHhhcHHHHHHHHhchhhhh-hhHHHHHHHHH
Q psy2827         166 TEQQLDSRRRGLEIYLEKVCAVRVIA-ESELMQEFLTD  202 (373)
Q Consensus       166 ~i~q~~~rr~gl~~yl~~v~~~~~i~-~s~~~~~FL~~  202 (373)
                      +..-++.||.||+.||+.++++|.+. +|+.+.+||..
T Consensus        76 ~~~~ie~Rr~~Le~fL~~i~~~p~l~~~s~~~~~FL~~  113 (116)
T cd07295          76 SDEVIEERRQGLETFLQSVAGHPLLQTGSKVLAAFLQD  113 (116)
T ss_pred             CHHHHHHHHHHHHHHHHHHhcCHhhhhCCHHHHHhcCC
Confidence            34456999999999999999999998 69999999864

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor for the retromer.

>cd06864 PX_SNX4 The phosphoinositide binding Phox Homology domain of Sorting Nexin 4

Probab=93.92  E-value=0.048  Score=45.98  Aligned_cols=35  Identities=31%  Similarity=0.548  Sum_probs=31.8

Q ss_pred             hhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827         167 EQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT  201 (373)
Q Consensus       167 i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~  201 (373)
                      ..-++.||.||+.||+.++++|.+.+|+.+.+||.
T Consensus        93 ~~fie~Rr~~Le~fL~~i~~~p~l~~s~~l~~FL~  127 (129)
T cd06864          93 PDFVERRRAGLENFLLRVAGHPELCQDKIFLEFLT  127 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHcChhhhcCcHHHHhcC
Confidence            34459999999999999999999999999999985

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It shows a similar domain architecture as SNX1-2, among others, containing a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. SNX4 is implicated in the regulation of

>cd06868 PX_HS1BP3 The phosphoinositide binding Phox Homology domain of HS1BP3

Probab=93.84  E-value=0.063  Score=44.72  Aligned_cols=35  Identities=17%  Similarity=0.292  Sum_probs=31.7

Q ss_pred             hHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHH
Q psy2827         168 QQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTD  202 (373)
Q Consensus       168 ~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~  202 (373)
                      .-++.||.||+.||+.+++++.+.+|+.+.+||..
T Consensus        85 ~~ie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~  119 (120)
T cd06868          85 SDIRERRAAFNDFMRFISKDEKLANCPELLEFLGV  119 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHcChhhhcCHHHHHHhcC
Confidence            34589999999999999999999999999999853

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Hematopoietic lineage cell-specific protein-1 (HS1) binding protein 3 (HS1BP3) associates with HS1 proteins through their SH3 domains, suggesting a role in mediating signaling. It has been reported that HS1BP3 might affect the IL-2 signaling pathway in hematopoietic lineage cells. Mutations in HS1BP3 may also be associated with familial Parkinson disease and essential tremor. HS1BP3 contains a PX domain, a leucine zipper, motifs similar to immunoreceptor tyrosine-based inhibitory motif and proline-rich regions. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.

>cd07286 PX_SNX18 The phosphoinositide binding Phox Homology domain of Sorting Nexin 18

Probab=93.77  E-value=0.11  Score=43.78  Aligned_cols=37  Identities=32%  Similarity=0.636  Sum_probs=32.8

Q ss_pred             chhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHH
Q psy2827         166 TEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTD  202 (373)
Q Consensus       166 ~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~  202 (373)
                      ...=++.||.||+.||++|++.|.+..|..++.||..
T Consensus        70 ~~~FIe~Rr~~Lq~FL~ria~hp~L~~s~~~~~FL~~  106 (127)
T cd07286          70 EEDFISKRRKGLIWWMDHMCSHPVLARCDAFQHFLTC  106 (127)
T ss_pred             CHHHHHHHHHHHHHHHHHHHcCcccccChHHHHHhcC
Confidence            3333489999999999999999999999999999975

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX18, like SNX9, contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. The PX-BAR structural unit helps determine specific membrane localization. SNX18 is localized to peripheral endosomal structures, and acts in a trafficki

>cd06163 S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms

Probab=93.75  E-value=0.0013  Score=58.77  Aligned_cols=59  Identities=17%  Similarity=0.194  Sum_probs=49.6

Q ss_pred             HHHHhcccCCCCCccceEEEEEcC----CCceE---EEEEEecCCHHHHHHHhccccCCCchhhhchhheeeee
Q psy2827         199 FLTDALDENGTNISSPVDIKILLP----DREVI---TVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIV  265 (373)
Q Consensus       199 FL~~~~s~~~~~~~~~l~l~nlLP----DGg~i---~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~  265 (373)
                      ++..+ +. +      ++++||+|    |||++   .++..++++.+.......+..|+..+..++.+++++|.
T Consensus       115 ~~~~~-n~-~------l~~fNLlPippLDGg~il~~~~~~~~~~~~~~~~~~~~~~~g~~ill~l~~~~~~~d~  180 (182)
T cd06163         115 FLALL-SI-N------LGILNLLPIPALDGGHLLFLLIEAIRGRPLSEKVEEIIQTIGFALLLGLMLFVTFNDI  180 (182)
T ss_pred             HHHHH-HH-H------HHHHHcCCCCCCCHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44555 55 5      89999999    99999   77788889988888888999999888888999998874

In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA.

>cd06878 PX_SNX25 The phosphoinositide binding Phox Homology domain of Sorting Nexin 25

Probab=93.72  E-value=0.06  Score=45.28  Aligned_cols=36  Identities=25%  Similarity=0.436  Sum_probs=32.6

Q ss_pred             chhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827         166 TEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT  201 (373)
Q Consensus       166 ~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~  201 (373)
                      +...++.||.||+.||+.+.+++.+.+|+.+.+||.
T Consensus        90 ~~~fle~Rr~~Le~YLq~ll~~~~l~~s~~l~~FLs  125 (127)
T cd06878          90 DKKFLDKSKNQLQKYLQFILEDETLCQSEALYSFLS  125 (127)
T ss_pred             CHHHHHHHHHHHHHHHHHHhCChhhcCCHHHHHHcC
Confidence            445669999999999999999999999999999984

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. The function of SNX25 is not yet known. It has been found in exosomes from human malignant pleural effusions. SNX25 shows the same domain architecture as SNX13 and SNX14, containing an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some S

>cd06881 PX_SNX15_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 15-like proteins

Probab=93.68  E-value=0.07  Score=44.14  Aligned_cols=37  Identities=19%  Similarity=0.321  Sum_probs=33.1

Q ss_pred             chhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHH
Q psy2827         166 TEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTD  202 (373)
Q Consensus       166 ~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~  202 (373)
                      +..-+++||.||+.||+.|++++.+.+|+.|++||..
T Consensus        80 ~~~~IeeRr~~Le~fL~~i~~~p~l~~s~~~~~Fl~~  116 (117)
T cd06881          80 DAAVIEERRQAILELLDFVGNHPALYQSSAFQQFFEE  116 (117)
T ss_pred             CHHHHHHHHHHHHHHHHHHhCCHhhhcChHHHHHhcc
Confidence            4445699999999999999999999999999999853

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily have similarity to sorting nexin 15 (SNX15), which contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNX15 plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of the protein. Other members of this subfamily cont

>cd07282 PX_SNX2 The phosphoinositide binding Phox Homology domain of Sorting Nexin 2

Probab=93.31  E-value=0.063  Score=44.95  Aligned_cols=32  Identities=25%  Similarity=0.503  Sum_probs=30.4

Q ss_pred             HHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827         170 LDSRRRGLEIYLEKVCAVRVIAESELMQEFLT  201 (373)
Q Consensus       170 ~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~  201 (373)
                      ++.||.||+.||++++++|.+.+|..++.||.
T Consensus        91 ie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~  122 (124)
T cd07282          91 VEKRRAALERYLQRTVKHPTLLQDPDLRQFLE  122 (124)
T ss_pred             HHHHHHHHHHHHHHHhcCcccccChHHHHhhc
Confidence            48999999999999999999999999999985

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures efficient cargo sort

>PF12812 PDZ_1: PDZ-like domain

Probab=93.19  E-value=0.27  Score=37.65  Aligned_cols=42  Identities=29%  Similarity=0.305  Sum_probs=37.7

Q ss_pred             EEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh
Q psy2827          48 HVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS   91 (373)
Q Consensus        48 ~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~   91 (373)
                      ++.....|+++...|+..|-.|.+|||+++.+  .+++.+.+++
T Consensus        33 v~v~~~~g~~~~~~~i~~g~iI~~Vn~kpt~~--Ld~f~~vvk~   74 (78)
T PF12812_consen   33 VYVAVSGGSLAFAGGISKGFIITSVNGKPTPD--LDDFIKVVKK   74 (78)
T ss_pred             EEEEecCCChhhhCCCCCCeEEEeECCcCCcC--HHHHHHHHHh
Confidence            56677888999877799999999999999999  9999999987

>cd06897 PX_SNARE The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi

Probab=93.14  E-value=0.091  Score=42.58  Aligned_cols=36  Identities=28%  Similarity=0.438  Sum_probs=32.4

Q ss_pred             chhHHHHHhhcHHHHHHHHhchh--hhhhhHHHHHHHH
Q psy2827         166 TEQQLDSRRRGLEIYLEKVCAVR--VIAESELMQEFLT  201 (373)
Q Consensus       166 ~i~q~~~rr~gl~~yl~~v~~~~--~i~~s~~~~~FL~  201 (373)
                      +..-++.|+.+|+.||+.+++.+  .+.+|..+.+||.
T Consensus        69 ~~~~ie~Rr~~Le~yL~~l~~~~~~~l~~s~~~~~FL~  106 (108)
T cd06897          69 NPKLVEERRVGLEAFLRALLNDEDSRWRNSPAVKEFLN  106 (108)
T ss_pred             CHHHHHHHHHHHHHHHHHHHcCCccchhcCHHHHHHhC
Confidence            34456999999999999999999  9999999999985

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of fungal proteins similar to Saccharomyces cerevisiae Vam7p. They contain an N-terminal PX domain and a C-terminal SNARE domain. The SNARE (Soluble NSF attachment protein receptor) family of proteins are integral membrane proteins that serve as key factors for vesicular trafficking. Vam7p is anchored at the vacuolar membrane through the specific interaction of its PX domain with phosphatidylinositol-3-phosphate (PI3P) present in bilayers. It plays an essential role in vacuole fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction.

>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat

Probab=93.00  E-value=0.49  Score=38.25  Aligned_cols=62  Identities=26%  Similarity=0.286  Sum_probs=47.2

Q ss_pred             CCceE---EEEEEecCCHHHHHHHhccccCCC-chhhhchhheeeeeccceeeccCcCCCCceeeecc
Q psy2827         223 DREVI---TVSVRKSATADEVYASAVPKLYLQ-SPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQN  286 (373)
Q Consensus       223 DGg~i---~ie~~~~~~~~~~~~~~~~~igl~-~~~~l~~f~lf~~~~~~~~r~l~~~e~p~~~~~~~  286 (373)
                      .|+++   -|.+.+..++.+|++.+.++.-.- .+..--=|+||...+.+-.|||.+.|.|.+  ++.
T Consensus        31 ~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~d~~~~s~p~FALYevh~nGe~RKL~d~E~PL~--~RL   96 (112)
T cd01782          31 GGEKVATKCIRVSSTATTRDVIDTLSEKFRPDMRMLSNPTYSLYEVHENGEERRLLDDEKPLV--VQL   96 (112)
T ss_pred             CCCcEEEEEEEEecCCCHHHHHHHHHHHhcccccccCCcceEEEEEecCCceEEcCCcCCCeE--Eee
Confidence            45566   455556789999999999998741 123345899999998888999999999964  554

The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.

>cd07293 PX_SNX3 The phosphoinositide binding Phox Homology domain of Sorting Nexin 3

Probab=92.67  E-value=0.081  Score=44.24  Aligned_cols=36  Identities=25%  Similarity=0.517  Sum_probs=32.3

Q ss_pred             chhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827         166 TEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT  201 (373)
Q Consensus       166 ~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~  201 (373)
                      +..-++.||+||+.||+.+++.|.+.+|..+..||.
T Consensus        84 ~~~fie~Rr~~Le~FL~~i~~hP~l~~~~~l~~FL~  119 (123)
T cd07293          84 DDSFIEERKQGLEQFLNKVAGHPLAQNERCLHMFLQ  119 (123)
T ss_pred             CHHHHHHHHHHHHHHHHHHHcCcccccCcHHHhhcC
Confidence            344569999999999999999999999999999985

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX3 associates with early endosomes through a PX domain-mediated interaction with phosphatidylinositol-3-phosphate (PI3P). It associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor f

>cd01778 RASSF1_RA Ubiquitin-like domain of RASSF1 tumour supproessor protein

Probab=92.55  E-value=0.57  Score=37.23  Aligned_cols=62  Identities=24%  Similarity=0.339  Sum_probs=49.4

Q ss_pred             EEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeec---cceeeccCcCCCCce
Q psy2827         218 KILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVE---YSFERKLEAKEFPHH  281 (373)
Q Consensus       218 ~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~---~~~~r~l~~~e~p~~  281 (373)
                      -=+||-|..-.+.+.+..++.++++.+.+++.+  ...-.-||||....   ....|||.+.|+|..
T Consensus        10 sf~lp~~s~k~v~IsS~tTt~eVI~~LL~KF~v--~~nP~kFALYe~~h~~ge~~~rkL~d~E~PL~   74 (96)
T cd01778          10 SLPLPKDTAKHLHISSKTTVREVIEALLKKFLV--VDNPRKFALFEREHRTGQVYLRKLSDDECPLY   74 (96)
T ss_pred             EEeccCCceeEEEEecCCcHHHHHHHHHHhhee--ccCCcceEEEEEEecCCcEEEEECCCCCCCeE
Confidence            346788888889999999999999999999986  23345789997642   235799999999964

RASSF1 (also known as RASSF3 and NORE1) is a tumour suppressor protein with a C-terminal Ras-associating (RA) domain that binds Ras. RASSF1 also binds the proapoptotic protein kinase MST1 and is thus thought to regulate the proapoptotic signalling pathway. RASSF1 also associates with microtubule-associated proteins like MAP1B and regulates tubulin polymerization. RASSF1 also binds CDC20 and regulates mitosis by inhibiting the anaphase-promoting complex and preventing degradation of cyclin A and cyclin B until the spindle checkpoint becomes fully operational.

>cd06865 PX_SNX_like The phosphoinositide binding Phox Homology domain of SNX-like proteins

Probab=92.33  E-value=0.1  Score=43.43  Aligned_cols=35  Identities=37%  Similarity=0.520  Sum_probs=31.8

Q ss_pred             hHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHH
Q psy2827         168 QQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTD  202 (373)
Q Consensus       168 ~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~  202 (373)
                      +-++.||.||+.||+.++.++.+.+|..++.||..
T Consensus        85 ~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~  119 (120)
T cd06865          85 EFIEQRRVALEKYLNRLAAHPVIGLSDELRVFLTL  119 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHcCceeecCcHHHHhccC
Confidence            34599999999999999999999999999999853

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily is composed of uncharacterized proteins, predominantly from plants, with similarity to sorting nexins. A few members show a similar domain architectu

>cd06860 PX_SNX7_30_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30

Probab=92.24  E-value=0.12  Score=42.76  Aligned_cols=36  Identities=25%  Similarity=0.449  Sum_probs=32.3

Q ss_pred             chhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827         166 TEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT  201 (373)
Q Consensus       166 ~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~  201 (373)
                      +..-++.||.||+.||+.+++.|.+.+|..++.||.
T Consensus        79 ~~~fie~Rr~~Le~fL~~i~~hp~l~~s~~l~~FLt  114 (116)
T cd06860          79 SPEFVATRMRALHKFLNRIVEHPVLSFNEHLKVFLT  114 (116)
T ss_pred             CHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHhhc
Confidence            334459999999999999999999999999999985

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily consists of SNX7, SNX30, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal

>KOG2527|consensus

Probab=92.21  E-value=0.14  Score=42.82  Aligned_cols=34  Identities=29%  Similarity=0.640  Sum_probs=30.7

Q ss_pred             HHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHHh
Q psy2827         170 LDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDA  203 (373)
Q Consensus       170 ~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~~  203 (373)
                      +|+||+||+.||++|++.+.+-++.-+.-||...
T Consensus        97 IEeRrqgLe~fl~kVaghpL~q~~~~Lh~Flq~~  130 (144)
T KOG2527|consen   97 IEERRQGLEVFLRKVAGHPLLQNERCLHLFLQSE  130 (144)
T ss_pred             HHHHHHHHHHHHHHHhCchhhhccHHHHHHHHhh
Confidence            3999999999999999999999888888888764

>cd07288 PX_SNX15 The phosphoinositide binding Phox Homology domain of Sorting Nexin 15

Probab=92.16  E-value=0.13  Score=42.71  Aligned_cols=34  Identities=21%  Similarity=0.333  Sum_probs=31.3

Q ss_pred             hHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827         168 QQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT  201 (373)
Q Consensus       168 ~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~  201 (373)
                      .=+++||.||+.||+.++++|.+.+|..+.+||.
T Consensus        83 ~fIeeRR~~Le~fL~~i~~~p~l~~s~~~~~FL~  116 (118)
T cd07288          83 AVIEERRNAAEAMLLFTVNIPALYNSPQLKEFFR  116 (118)
T ss_pred             HHHHHHHHHHHHHHHHHhCChhhcCChHHHHHHh
Confidence            3459999999999999999999999999999985

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX15 contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. It plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of t

>KOG4407|consensus

Probab=92.00  E-value=0.24  Score=55.28  Aligned_cols=52  Identities=37%  Similarity=0.561  Sum_probs=41.8

Q ss_pred             EEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCeEEEE
Q psy2827          48 HVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLT   99 (373)
Q Consensus        48 ~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~~g~~v~l~   99 (373)
                      ++..|.+++||.-+.|+.||+++.||..++.++...+++..+++.--.+++.
T Consensus       146 ~~~eV~~n~~~~~a~LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~~~~~~~  197 (1973)
T KOG4407|consen  146 FIKEVQANGPAHYANLQTGDRVLMVNNQPIAGIAYSTIVSMIKQTPAVLTLH  197 (1973)
T ss_pred             hhhhhccCChhHHHhhhccceeEEeecCcccchhhhhhhhhhccCCCCCCce
Confidence            5677899999999999999999999999998888888888888743333333

>cd07285 PX_SNX9 The phosphoinositide binding Phox Homology domain of Sorting Nexin 9

Probab=91.99  E-value=0.11  Score=43.53  Aligned_cols=35  Identities=31%  Similarity=0.551  Sum_probs=32.1

Q ss_pred             HHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHHh
Q psy2827         169 QLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDA  203 (373)
Q Consensus       169 q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~~  203 (373)
                      =++.|+.||+.||++|++.|.+.+++.++.||..-
T Consensus        74 FIe~Rr~~Le~FL~ri~~hP~L~~~~~l~~FL~~~  108 (126)
T cd07285          74 FIKMRMERLQAWMTRMCRHPVISESEVFQQFLNFR  108 (126)
T ss_pred             HHHHHHHHHHHHHHHHHcCcCcCCCcHHHHHhCCC
Confidence            34899999999999999999999999999999764

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. T

>cd06863 PX_Atg24p The phosphoinositide binding Phox Homology domain of yeast Atg24p, an autophagic degradation protein

Probab=91.68  E-value=0.13  Score=42.50  Aligned_cols=36  Identities=19%  Similarity=0.511  Sum_probs=32.2

Q ss_pred             chhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827         166 TEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT  201 (373)
Q Consensus       166 ~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~  201 (373)
                      +..-++.||.||+.||+.++++|.+.+|..+..||.
T Consensus        81 ~~~~ie~Rr~~Le~fL~~i~~~p~l~~s~~l~~FL~  116 (118)
T cd06863          81 SPEFITRRAQSLQRFLRRISLHPVLSQSKILHQFLE  116 (118)
T ss_pred             CHHHHHHHHHHHHHHHHHHhcCcccccCcHHHhhcC
Confidence            344568999999999999999999999999999985

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The yeast Atg24p is a sorting nexin (SNX) which is involved in membrane fusion events at the vacuolar surface during pexophagy. This is facilitated via binding of Atg24p to phosphatidylinositol 3-phosphate (PI3P) through its PX domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway.

>cd07287 PX_RPK118_like The phosphoinositide binding Phox Homology domain of RPK118-like proteins

Probab=91.56  E-value=0.18  Score=41.82  Aligned_cols=36  Identities=19%  Similarity=0.353  Sum_probs=32.0

Q ss_pred             chhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827         166 TEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT  201 (373)
Q Consensus       166 ~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~  201 (373)
                      ...-+++||.||+.||+.+.+.|.+.+|..+++||.
T Consensus        81 d~~fIe~RR~~Le~fL~~i~~~p~l~~s~~~~~Fl~  116 (118)
T cd07287          81 DESVIEERRQCAEDLLQFSANIPALYNSSQLEDFFK  116 (118)
T ss_pred             CHHHHHHHHHHHHHHHHHHhcCccccCChHHHHHhc
Confidence            344559999999999999999999999999999984

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to human RPK118, which contains an N-terminal PX domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. It also binds the antioxidant peroxiredoxin-3 (PRDX3) and may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Members of this subfamily also show similarity to sorting nexin 15 (SNX15), which contains PX and MIT domains but does not contain a kinase doma

>cd07276 PX_SNX16 The phosphoinositide binding Phox Homology domain of Sorting Nexin 16

Probab=91.50  E-value=0.21  Score=40.79  Aligned_cols=36  Identities=28%  Similarity=0.513  Sum_probs=32.3

Q ss_pred             hhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHH
Q psy2827         167 EQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTD  202 (373)
Q Consensus       167 i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~  202 (373)
                      ..-++.|+.||+.||+.+++++.+.+|..+++||..
T Consensus        74 ~~fie~Rr~~Lq~fL~~ll~~~~l~~s~~~~~FL~~  109 (110)
T cd07276          74 PDFLEERQLGLQAFVNNIMAHKDIAKCKLVREFFCL  109 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHhhhcChHHHHHhcc
Confidence            344599999999999999999999999999999853

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX16 contains a central PX domain followed by a coiled-coil region. SNX16 is localized in early and recycling endosomes through the binding of its PX domain to phosphatidylinositol-3-phosphate (PI3P). It plays a role in epidermal growth factor (EGF) signaling by regulating EGF receptor membrane trafficking.

>cd07283 PX_SNX30 The phosphoinositide binding Phox Homology domain of Sorting Nexin 30

Probab=91.39  E-value=0.17  Score=41.82  Aligned_cols=34  Identities=26%  Similarity=0.546  Sum_probs=31.3

Q ss_pred             hHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827         168 QQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT  201 (373)
Q Consensus       168 ~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~  201 (373)
                      .-++.||+||+.||+.+++.|.+.+|..++.||.
T Consensus        81 ~fie~Rr~~Le~FL~~i~~hp~L~~s~~~~~FLt  114 (116)
T cd07283          81 EFVETRRKALDKFLKRIADHPVLSFNEHFNVFLT  114 (116)
T ss_pred             HHHHHHHHHHHHHHHHHHcCcccccCcHHHHhhc
Confidence            3458999999999999999999999999999985

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX30 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-8, and SNX32

>cd07294 PX_SNX12 The phosphoinositide binding Phox Homology domain of Sorting Nexin 12

Probab=91.37  E-value=0.14  Score=43.32  Aligned_cols=35  Identities=26%  Similarity=0.553  Sum_probs=31.9

Q ss_pred             HHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHHh
Q psy2827         169 QLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDA  203 (373)
Q Consensus       169 q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~~  203 (373)
                      =++.||+||+.||+++++.+.+.++..+..||..-
T Consensus        89 fie~Rr~~Le~FL~~i~~hp~l~~~~~l~~FL~~~  123 (132)
T cd07294          89 FIEERRQGLEQFINKIAGHPLAQNERCLHMFLQDE  123 (132)
T ss_pred             HHHHHHHHHHHHHHHHHcCcccccChHHHHhcCCC
Confidence            34999999999999999999999999999999753

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. The specific function of SNX12 has yet to be elucidated.

>cd06869 PX_UP2_fungi The phosphoinositide binding Phox Homology domain of uncharacterized fungal proteins

Probab=91.26  E-value=0.17  Score=42.02  Aligned_cols=31  Identities=35%  Similarity=0.498  Sum_probs=29.0

Q ss_pred             HHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827         171 DSRRRGLEIYLEKVCAVRVIAESELMQEFLT  201 (373)
Q Consensus       171 ~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~  201 (373)
                      +.||.+|+.||+.+++++.+.+|+.+.+||.
T Consensus        87 E~Rr~~Le~yL~~Ll~~p~l~~s~~~~~FL~  117 (119)
T cd06869          87 EKLRLSLRQYLRSLLKDPEVAHSSILQEFLT  117 (119)
T ss_pred             HHHHHHHHHHHHHHhcChhhhcChHHHHhhC
Confidence            6788899999999999999999999999985

The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.

>cd06894 PX_SNX3_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 and related proteins

Probab=90.91  E-value=0.18  Score=42.08  Aligned_cols=36  Identities=28%  Similarity=0.601  Sum_probs=32.2

Q ss_pred             hhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHH
Q psy2827         167 EQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTD  202 (373)
Q Consensus       167 i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~  202 (373)
                      ..-++.||.||+.||+.++++|.+.+|..+..||..
T Consensus        85 ~~fie~Rr~~L~~fL~~i~~hp~l~~s~~~~~FL~~  120 (123)
T cd06894          85 EEFIEERRKGLETFINKVAGHPLAQNEKCLHMFLQE  120 (123)
T ss_pred             HHHHHHHHHHHHHHHHHHHcChhhccCCHHHHhcCC
Confidence            334599999999999999999999999999999864

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily is composed of SNX3, SNX12, and fungal Grd19. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. SNX3/Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the

>cd06871 PX_MONaKA The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase

Probab=90.90  E-value=0.22  Score=41.42  Aligned_cols=37  Identities=22%  Similarity=0.416  Sum_probs=33.1

Q ss_pred             hhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHHh
Q psy2827         167 EQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDA  203 (373)
Q Consensus       167 i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~~  203 (373)
                      ..-++.||.||+.||+.+.+.+.+.+|..+.+||..-
T Consensus        74 ~~~ie~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~~  110 (120)
T cd06871          74 REFIAERQQGLQNYLNVILMNPILASCLPVKKFLDPN  110 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHcChhhccCHHHHHhcCcc
Confidence            4456999999999999999999999999999999644

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. MONaKA (Modulator of Na,K-ATPase) binds the plasma membrane ion transporter, Na,K-ATPase, and modulates its enzymatic and ion pump activities. It modulates brain Na,K-ATPase and may be involved in regulating electrical excitability and synaptic transmission. MONaKA contains an N-terminal PX domain and a C-terminal catalytic kinase domain. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.

>smart00455 RBD Raf-like Ras-binding domain

Probab=90.74  E-value=0.38  Score=36.04  Aligned_cols=34  Identities=35%  Similarity=0.415  Sum_probs=32.4

Q ss_pred             EEEEcCCCceEEEEEEecCCHHHHHHHhccccCC
Q psy2827         217 IKILLPDREVITVSVRKSATADEVYASAVPKLYL  250 (373)
Q Consensus       217 l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl  250 (373)
                      ..++||||.+..+.+..+.++.++++.++++-|+
T Consensus         2 ~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l   35 (70)
T smart00455        2 CKVHLPDNQRTVVKVRPGKTVRDALAKALKKRGL   35 (70)
T ss_pred             eEEECCCCCEEEEEECCCCCHHHHHHHHHHHcCC
Confidence            4678999999999999999999999999999999

>cd07284 PX_SNX7 The phosphoinositide binding Phox Homology domain of Sorting Nexin 7

Probab=90.68  E-value=0.2  Score=41.42  Aligned_cols=33  Identities=24%  Similarity=0.469  Sum_probs=30.7

Q ss_pred             HHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827         169 QLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT  201 (373)
Q Consensus       169 q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~  201 (373)
                      -++.||.||+.||+.++..|.+..|+.++.||.
T Consensus        82 fie~Rr~~Le~FL~ri~~hp~L~~s~~~~~FL~  114 (116)
T cd07284          82 FIETRRKALHKFLNRIADHPTLTFNEDFKIFLT  114 (116)
T ss_pred             HHHHHHHHHHHHHHHHHcCcccccChHHHHhhc
Confidence            348999999999999999999999999999985

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX7 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-6, SNX8, SNX30,

>cd06859 PX_SNX1_2_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2

Probab=90.62  E-value=0.16  Score=41.48  Aligned_cols=32  Identities=28%  Similarity=0.515  Sum_probs=30.2

Q ss_pred             HHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827         170 LDSRRRGLEIYLEKVCAVRVIAESELMQEFLT  201 (373)
Q Consensus       170 ~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~  201 (373)
                      ++.|+.+|+.||+.+++++.+.+|+.+..||.
T Consensus        81 ie~Rr~~L~~fL~~i~~~p~l~~s~~~~~Fl~  112 (114)
T cd06859          81 IEKRRAALERFLRRIAAHPVLRKDPDFRLFLE  112 (114)
T ss_pred             HHHHHHHHHHHHHHHhcChhhccCcHHHhhcC
Confidence            48999999999999999999999999999984

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX1, SNX2, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. Both domains have been shown to determine the specific membrane-targeting of SNX1. SNX1 and SNX2 are components of the retromer complex,

>KOG1738|consensus

Probab=90.57  E-value=0.45  Score=49.49  Aligned_cols=71  Identities=24%  Similarity=0.363  Sum_probs=54.8

Q ss_pred             CCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCe
Q psy2827          17 SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDV   95 (373)
Q Consensus        17 ~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~~~i~~~g~~   95 (373)
                      ...|+|+.|....+             .+. +|..+.+++||...+ +..||.++.||+..+-++.+.-++..++....-
T Consensus       211 p~eglg~~I~Ssyd-------------g~h-~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sg  276 (638)
T KOG1738|consen  211 PSEGLGLYIDSSYD-------------GPH-VTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAG  276 (638)
T ss_pred             cccCCceEEeeecC-------------Cce-eccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCccc
Confidence            34679999887743             122 688999999999988 899999999999998897777778777774344


Q ss_pred             EEEEEE
Q psy2827          96 LSLTVI  101 (373)
Q Consensus        96 v~l~V~  101 (373)
                      +.+++.
T Consensus       277 i~l~lk  282 (638)
T KOG1738|consen  277 IELTLK  282 (638)
T ss_pred             ceeeee
Confidence            555554

>cd06876 PX_MDM1p The phosphoinositide binding Phox Homology domain of yeast MDM1p

Probab=90.31  E-value=0.22  Score=42.12  Aligned_cols=32  Identities=31%  Similarity=0.657  Sum_probs=30.4

Q ss_pred             HHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827         170 LDSRRRGLEIYLEKVCAVRVIAESELMQEFLT  201 (373)
Q Consensus       170 ~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~  201 (373)
                      ++.|+.+|+.||+.++..+.+++|+.+.+||.
T Consensus       101 ie~Rr~~Le~yL~~Ll~~~~l~~s~~l~~FLs  132 (133)
T cd06876         101 VEERRKALEKYLQELLKIPEVCEDEEFRKFLS  132 (133)
T ss_pred             HHHHHHHHHHHHHHHHcCccccCChHHHHhhc
Confidence            58999999999999999999999999999984

The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Yeast MDM1p is a filament-like protein localized in punctate structures distributed throughout the cytoplasm. It plays an important role in nuclear and mitochondrial transmission to daughter buds. Members of this subfamily show similar domain architectures as some sorting nexins (SNXs). Some members are similar to SNX19 in that they contain an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. Others are similar to SNX13 and SNX14, which also harbor these three domains as well as a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regul

>cd06880 PX_SNX22 The phosphoinositide binding Phox Homology domain of Sorting Nexin 22

Probab=90.14  E-value=0.57  Score=38.28  Aligned_cols=36  Identities=28%  Similarity=0.487  Sum_probs=29.9

Q ss_pred             chhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHHh
Q psy2827         166 TEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDA  203 (373)
Q Consensus       166 ~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~~  203 (373)
                      ...-+++||.||+.||+.++..+.  .|..+.+||..-
T Consensus        67 ~~~~ie~Rr~~Le~yL~~ll~~~~--~s~~l~~FL~~~  102 (110)
T cd06880          67 NPKVLEQRRQGLEAYLQGLLKINE--LPKQLLDFLGVR  102 (110)
T ss_pred             CHHHHHHHHHHHHHHHHHHHcCcc--ccHHHHHHhCCC
Confidence            333459999999999999999998  588888898764

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX22 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. The biological function of SNX22 is not yet known.

>smart00312 PX PhoX homologous domain, present in p47phox and p40phox

Probab=90.12  E-value=0.31  Score=38.77  Aligned_cols=34  Identities=38%  Similarity=0.635  Sum_probs=30.9

Q ss_pred             hhHHHHHhhcHHHHHHHHhchhhhhh-hHHHHHHH
Q psy2827         167 EQQLDSRRRGLEIYLEKVCAVRVIAE-SELMQEFL  200 (373)
Q Consensus       167 i~q~~~rr~gl~~yl~~v~~~~~i~~-s~~~~~FL  200 (373)
                      ..-++.|+.+|+.||+.+++++.+.+ |+.+.+||
T Consensus        70 ~~~i~~R~~~L~~yL~~l~~~~~~~~~s~~~~~Fl  104 (105)
T smart00312       70 EEFIEKRRRGLERYLQSLLNHPELINESEVVLSFL  104 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCHhhhccChHHHHhc
Confidence            34558999999999999999999999 99999997

Eukaryotic domain of unknown function present in phox proteins, PLD isoforms, a PI3K isoform.

>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras

Probab=89.88  E-value=0.39  Score=36.05  Aligned_cols=34  Identities=26%  Similarity=0.332  Sum_probs=30.9

Q ss_pred             EEEEcCCCceEEEEEEecCCHHHHHHHhccccCC
Q psy2827         217 IKILLPDREVITVSVRKSATADEVYASAVPKLYL  250 (373)
Q Consensus       217 l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl  250 (373)
                      +.++||||++..+.+..+.++.+.+..++++-|+
T Consensus         3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L   36 (71)
T PF02196_consen    3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGL   36 (71)
T ss_dssp             EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT-
T ss_pred             EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCC
Confidence            6789999999999999999999999999999999

It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.

>cd06875 PX_IRAS The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected

Probab=89.73  E-value=0.34  Score=40.00  Aligned_cols=37  Identities=24%  Similarity=0.345  Sum_probs=33.7

Q ss_pred             hhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHHh
Q psy2827         167 EQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDA  203 (373)
Q Consensus       167 i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~~  203 (373)
                      ..-++.||.||+.||+.+++.+.+++|..+.+||...
T Consensus        69 ~~~ie~Rr~~Le~yL~~ll~~~~~~~s~~l~~FL~~~  105 (116)
T cd06875          69 PSFVEKRRKELEIYLQTLLSFFQKTMPRELAHFLDFH  105 (116)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHhCCC
Confidence            3445999999999999999999999999999999876

The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Imidazoline Receptor Antisera-Selected (IRAS), also called nischarin, contains an N-terminal PX domain, leucine rich repeats, and a predicted coiled coil domain. The PX domain of IRAS binds to phosphatidylinositol-3-phosphate in membranes. Together with the coiled coil domain, it is essential for the localization of IRAS to endosomes. IRAS has been shown to interact with integrin and inhibit cell migration. Its interaction with alpha5 integrin causes a redistribution of the receptor from the cell surface to endosomal structures, suggesting that IRAS may function as a sorting nexin (SNX) which regulates the endosomal trafficking of integrin. SNXs make up the largest group a

>KOG3834|consensus

Probab=89.23  E-value=0.85  Score=45.50  Aligned_cols=79  Identities=23%  Similarity=0.402  Sum_probs=52.7

Q ss_pred             EEEEecCCCHHHHcCCCC-CCEEEEECCEEcCCCCHHHHHHHHHhCCCeEEEEEEecCccccc--cCCCCCCCCCeeeee
Q psy2827          48 HVSAVLAGGAAEKAGIRK-GDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAE--RLEPPDDHSGYQQID  124 (373)
Q Consensus        48 ~V~~V~~gspA~~aGL~~-GD~Il~InG~~v~~~s~~~~~~~i~~~g~~v~l~V~r~~~~~~~--~~~~~~~~~~~~~iG  124 (373)
                      .|-.|.++|+|.+|||.+ -|-|++|||..+.. ..+.+..+++..-+.|+++|...+.....  .+.+.+...+. ++|
T Consensus        18 hvlkVqedSpa~~aglepffdFIvSI~g~rL~~-dnd~Lk~llk~~sekVkltv~n~kt~~~R~v~I~ps~~wggq-llG   95 (462)
T KOG3834|consen   18 HVLKVQEDSPAHKAGLEPFFDFIVSINGIRLNK-DNDTLKALLKANSEKVKLTVYNSKTQEVRIVEIVPSNNWGGQ-LLG   95 (462)
T ss_pred             EEEEeecCChHHhcCcchhhhhhheeCcccccC-chHHHHHHHHhcccceEEEEEecccceeEEEEeccccccccc-ccc
Confidence            688999999999999876 89999999999975 13455566666445599998754332211  12222232333 678


Q ss_pred             eeec
Q psy2827         125 YTEK  128 (373)
Q Consensus       125 i~~~  128 (373)
                      ++.+
T Consensus        96 vsvr   99 (462)
T KOG3834|consen   96 VSVR   99 (462)
T ss_pred             eEEE
Confidence            7653

>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases

Probab=88.96  E-value=0.6  Score=35.21  Aligned_cols=34  Identities=29%  Similarity=0.396  Sum_probs=32.5

Q ss_pred             EEEEcCCCceEEEEEEecCCHHHHHHHhccccCC
Q psy2827         217 IKILLPDREVITVSVRKSATADEVYASAVPKLYL  250 (373)
Q Consensus       217 l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl  250 (373)
                      ..++||||++-.+.+..+.++.++++.++.+-|+
T Consensus         2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l   35 (72)
T cd01760           2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGL   35 (72)
T ss_pred             EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCC
Confidence            4678999999999999999999999999999999

The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.

>KOG3834|consensus

Probab=88.74  E-value=1.5  Score=43.78  Aligned_cols=86  Identities=29%  Similarity=0.364  Sum_probs=59.3

Q ss_pred             CCCcEEEEEEcCC-CC---ccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCC-CCCEEEEECCEEcCCC
Q psy2827           6 QTGPREVQIAKSD-TG---FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIR-KGDRILAVNNVNVEGA   80 (373)
Q Consensus         6 ~~~~r~v~l~r~~-~g---~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~-~GD~Il~InG~~v~~~   80 (373)
                      ....|.+.|.... .+   +|.+|+-....+..         .-..+|-+|.++|||+.|||. -+|.|+.+-..-... 
T Consensus        75 t~~~R~v~I~ps~~wggqllGvsvrFcsf~~A~---------~~vwHvl~V~p~SPaalAgl~~~~DYivG~~~~~~~~-  144 (462)
T KOG3834|consen   75 TQEVRIVEIVPSNNWGGQLLGVSVRFCSFDGAV---------ESVWHVLSVEPNSPAALAGLRPYTDYIVGIWDAVMHE-  144 (462)
T ss_pred             cceeEEEEecccccccccccceEEEeccCccch---------hheeeeeecCCCCHHHhcccccccceEecchhhhccc-
Confidence            3455777776554 34   88888754221100         112368899999999999988 699999983333344 


Q ss_pred             CHHHHHHHHHh-CCCeEEEEEEe
Q psy2827          81 THKQVVELIKS-GGDVLSLTVIS  102 (373)
Q Consensus        81 s~~~~~~~i~~-~g~~v~l~V~r  102 (373)
                       .+|+..+|.. .++++.+-|..
T Consensus       145 -~eDl~~lIeshe~kpLklyVYN  166 (462)
T KOG3834|consen  145 -EEDLFTLIESHEGKPLKLYVYN  166 (462)
T ss_pred             -hHHHHHHHHhccCCCcceeEee
Confidence             6888888887 68999988864

>KOG4257|consensus

Probab=88.47  E-value=0.62  Score=48.95  Aligned_cols=128  Identities=16%  Similarity=0.137  Sum_probs=91.5

Q ss_pred             EEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeec----------cce-eeccCcCCCCceeeec
Q psy2827         217 IKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVE----------YSF-ERKLEAKEFPHHLYIQ  285 (373)
Q Consensus       217 l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~----------~~~-~r~l~~~e~p~~~~~~  285 (373)
                      ..+.+|+|....|.+...+++..++..++.-+|+ .--.+..|+.-....          ... -+-|..--.||. |  
T Consensus         5 ~rv~~p~~~~kaVr~dv~~t~~rvi~v~~~~~g~-~~~~~~~~acr~~t~i~~~~~~~~~S~~~~~~l~~i~lp~c-y--   80 (974)
T KOG4257|consen    5 ARVFLPGGASKAVRYDVQTTIERVIHVVARGIGI-SQVAVAHFACRLVTGISPQTAGSGDSLWLHPMLRIIQLPHC-Y--   80 (974)
T ss_pred             cccccCCCcceeeeecchhheeeeeeeeeeccCC-Cchhhhheeeeeccccchhhhhhccccccchhhhhcccccc-c--
Confidence            4577899999999999999999999999999999 566666666655543          111 122344445554 2  


Q ss_pred             cccCC----CCceEEEEeeccCChhhhhcccCChHHHHHHHHHHHHHHhcCCccc--hhhHHHHHHHHhc
Q psy2827         286 NYSTA----SATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRA--EDRLYELKALQDA  349 (373)
Q Consensus       286 ~~~~~----~~~~~~lrk~~~~~~~~~~l~~~d~~a~~~ly~Q~~~dv~~~~~~~--~~~~~~L~~lq~~  349 (373)
                      +....    ....+-||--| .|..=-+|..+|..++-|+|.|-++|.-+-....  ++.+.||..|.-.
T Consensus        81 ~~~lp~~~s~ewr~elr~Ry-~P~~~~El~~eD~st~~Y~~~Qv~~df~q~~a~~~s~evAlql~cL~vr  149 (974)
T KOG4257|consen   81 ARHLPIGVSDEWRLELRMRY-MPQSVYELQAEDSSTFVYLHEQVVDDFFQHVAWRSSVEVALQLACLKVR  149 (974)
T ss_pred             cccCCCCcchhheeeeeeee-CcHHHHHHHhcccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            11211    12345566555 4999899999999999999999999998876654  3899999998754

>PF00787 PX: PX domain; InterPro: IPR001683 The PX (phox) domain [] occurs in a variety of eukaryotic proteins and have been implicated in highly diverse functions such as cell signalling, vesicular trafficking, protein sorting and lipid modification [, , ]

Probab=85.80  E-value=0.97  Score=35.95  Aligned_cols=35  Identities=31%  Similarity=0.545  Sum_probs=31.7

Q ss_pred             hhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827         167 EQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT  201 (373)
Q Consensus       167 i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~  201 (373)
                      ...+++|+..|+.||+.+++.+.+.+|+.+.+||.
T Consensus        77 ~~~~~~R~~~L~~yL~~l~~~~~~~~s~~l~~FL~  111 (113)
T PF00787_consen   77 PEFIEERRQALEKYLQSLLSHPELRSSEALKEFLE  111 (113)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSCHHHHSHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHcChhhhCchHHHHhcC
Confidence            34459999999999999999999999999999985

PX domains are important phosphoinositide-binding modules that have varying lipid-binding specificities []. The PX domain is approximately 120 residues long [], and folds into a three-stranded beta-sheet followed by three -helices and a proline-rich region that immediately preceeds a membrane-interaction loop and spans approximately eight hydrophobic and polar residues. The PX domain of p47phox binds to the SH3 domain in the same protein []. Phosphorylation of p47(phox), a cytoplasmic activator of the microbicidal phagocyte oxidase (phox), elicits interaction of p47(phox) with phoinositides. The protein phosphorylation-driven conformational change of p47(phox) enables its PX domain to bind to phosphoinositides, the interaction of which plays a crucial role in recruitment of p47(phox) from the cytoplasm to membranes and subsequent activation of the phagocyte oxidase. The lipid-binding activity of this protein is normally suppressed by intramolecular interaction of the PX domain with the C-terminal Src homology 3 (SH3) domain []. The PX domain is conserved from yeast to human. A recent multiple alignment of representative PX domain sequences can be found in [], although showing relatively little sequence conservation, their structure appears to be highly conserved. Although phosphatidylinositol-3-phosphate (PtdIns(3)P) is the primary target of PX domains, binding to phosphatidic acid, phosphatidylinositol-3,4-bisphosphate (PtdIns(3,4)P2), phosphatidylinositol-3,5-bisphosphate (PtdIns(3,5)P2), phosphatidylinositol-4,5-bisphosphate (PtdIns(4,5)P2), and phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4,5)P3) has been reported as well. The PX-domain is also a protein-protein interaction domain [].; GO: 0005515 protein binding, 0035091 phosphatidylinositol binding, 0007154 cell communication; PDB: 2DYB_A 1H6H_A 2WWE_A 1XTN_B 1XTE_A 2CZO_A 2V6V_B 2V14_A 2I4K_A 3IQ2_A ....

>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p

Probab=85.75  E-value=0.84  Score=39.01  Aligned_cols=33  Identities=15%  Similarity=0.424  Sum_probs=30.1

Q ss_pred             HHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827         169 QLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT  201 (373)
Q Consensus       169 q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~  201 (373)
                      ..+.||.+|+.||+.||++|++..++.++.||.
T Consensus       106 ~~~~rr~~LqrfL~RV~~hP~L~~d~~l~~FLE  138 (140)
T cd06891         106 DARKLKANLQRWFNRVCSDPILIRDEELRFFIE  138 (140)
T ss_pred             HHHHHHHHHHHHHHHHhCChhhccCHHHHHHhc
Confidence            447889999999999999999999999999983

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur

>cd01781 AF6_RA_repeat2 Ubiquitin domain of AT-6, second repeat

Probab=84.72  E-value=1.9  Score=34.58  Aligned_cols=71  Identities=20%  Similarity=0.201  Sum_probs=51.3

Q ss_pred             EEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeecc----------ceeeccCcCCCCceeeeccccCCCCc-eE
Q psy2827         227 ITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEY----------SFERKLEAKEFPHHLYIQNYSTASAT-CL  295 (373)
Q Consensus       227 i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~----------~~~r~l~~~e~p~~~~~~~~~~~~~~-~~  295 (373)
                      .+|-+.+.+++++++..+..+.|| -..-.--|.|-.+.-.          --.|-|.++|+|.. +..++....+. .+
T Consensus        18 KSIlvt~~~~a~~vV~eALeKygL-~~e~p~~Y~LveV~~~~~~~~~~~r~~~eRil~d~E~Pl~-i~~~w~~~~g~~~f   95 (100)
T cd01781          18 KTILLSINDNADRIVGEALEKYGL-EKSDPDDYCLVEVSNDDDRKSSDLREIDERILDDDECPLF-IMTAGPGENGFDSF   95 (100)
T ss_pred             EEEEecCCccHHHHHHHHHHHhCC-CccCccceEEEEEecccccccccccceeEEeCCCCcCHHH-HHHhCCCccCceee
Confidence            377777889999999999999999 6666777777776432          35788999999976 33455544333 35


Q ss_pred             EEEe
Q psy2827         296 CIRK  299 (373)
Q Consensus       296 ~lrk  299 (373)
                      .|||
T Consensus        96 ~l~~   99 (100)
T cd01781          96 LAIR   99 (100)
T ss_pred             EEec
Confidence            5554

The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.

>cd06883 PX_PI3K_C2 The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases

Probab=84.71  E-value=1  Score=36.76  Aligned_cols=33  Identities=27%  Similarity=0.452  Sum_probs=29.5

Q ss_pred             HHHHHhhcHHHHHHHHhch-hhhhhhHHHHHHHH
Q psy2827         169 QLDSRRRGLEIYLEKVCAV-RVIAESELMQEFLT  201 (373)
Q Consensus       169 q~~~rr~gl~~yl~~v~~~-~~i~~s~~~~~FL~  201 (373)
                      .++.|+.+|+.||+.+.+. +.|.+|+.+.+|+.
T Consensus        74 ~~e~R~~~Le~YL~~Ll~~~~~i~~s~~v~~F~~  107 (109)
T cd06883          74 VAERRKIELNSYLKSLFNASPEVAESDLVYTFFH  107 (109)
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHhcCHHHHHhcC
Confidence            3488999999999999887 69999999999985

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They are also involved in the regulation of clathrin-mediated membrane trafficking as well as ATP-dependent priming of neurosecretory granule exocytosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and d

>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14

Probab=84.20  E-value=1.5  Score=33.00  Aligned_cols=39  Identities=15%  Similarity=0.310  Sum_probs=33.9

Q ss_pred             EEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhc
Q psy2827         218 KILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAA  257 (373)
Q Consensus       218 ~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~  257 (373)
                      .++||||++=.+.+..|-++.+.+..++++-|+ ......
T Consensus         3 rV~LPdg~~T~V~vrpG~ti~d~L~kllekRgl-~~~~~~   41 (73)
T cd01817           3 RVILPDGSTTVVPTRPGESIRDLLSGLCEKRGI-NYAAVD   41 (73)
T ss_pred             EEECCCCCeEEEEecCCCCHHHHHHHHHHHcCC-ChhHEE
Confidence            468999999999999999999999999999999 433333

RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.

>cd06882 PX_p40phox The phosphoinositide binding Phox Homology domain of the p40phox subunit of NADPH oxidase

Probab=83.65  E-value=1  Score=37.55  Aligned_cols=33  Identities=18%  Similarity=0.282  Sum_probs=29.8

Q ss_pred             HHHHhhcHHHHHHHHhchhh-hhhhHHHHHHHHH
Q psy2827         170 LDSRRRGLEIYLEKVCAVRV-IAESELMQEFLTD  202 (373)
Q Consensus       170 ~~~rr~gl~~yl~~v~~~~~-i~~s~~~~~FL~~  202 (373)
                      ++.||.+|+.||+.+++.+. |.+|+.++.||..
T Consensus        84 ~e~Rr~~Le~yl~~Ll~~p~~i~~~~~v~~Fl~~  117 (123)
T cd06882          84 AERRIPLLNRYMKELLSLPVWVLMDEDVRLFFYQ  117 (123)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHhcCCHHHHHHhCC
Confidence            38899999999999999875 9999999999975

The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p40phox contains an N-terminal PX domain, a central SH3 domain that binds p47phox, and a C-terminal PB1 domain that interacts with p67phox. It is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. The PX domain is a phospholipid-binding module involved in the membrane targeting of proteins. The p40phox

>cd07277 PX_RUN The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains

Probab=80.43  E-value=1.8  Score=35.90  Aligned_cols=34  Identities=24%  Similarity=0.448  Sum_probs=22.3

Q ss_pred             chhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHH
Q psy2827         166 TEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFL  200 (373)
Q Consensus       166 ~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL  200 (373)
                      ...-+++||.+|+.||+.+... .+..+..+.+++
T Consensus        70 ~~~~ie~Rr~~Le~yL~~ll~~-~~~~~~~~~~~~  103 (118)
T cd07277          70 DAKFVEERRKRLQVYLRRVVNT-LIQTSPELTACP  103 (118)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHH-HHHhCchhhcCC
Confidence            3344599999999999988763 444443343333

The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized proteins containing an N-terminal RUN domain and a C-terminal PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction. The RUN domain is found in GTPases in the Rap and Rab families and may play a role in Ras-like signaling pathways.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	373
3qdo_A	109	Crystal Structure Of Pdz Domain Of Sorting Nexin 27		1e-37
3qe1_A	107	Crystal Structure Of Pdz Domain Of Sorting Nexin 27		1e-37
3qgl_A	101	Crystal Structure Of Pdz Domain Of Sorting Nexin 27		5e-37
1ozi_A	99	The Alternatively Spliced Pdz2 Domain Of Ptp-Bl Len		4e-12
1q7x_A	108	Solution Structure Of The Alternatively Spliced Pdz		6e-12
1vj6_A	102	Pdz2 From Ptp-Bl In Complex With The C-Terminal Lig		1e-11
1d5g_A	96	Solution Structure Of The Pdz2 Domain From Human Ph		1e-11
3pdz_A	96	Solution Structure Of The Pdz2 Domain From Human Ph		1e-11
1gm1_A	94	Second Pdz Domain (Pdz2) Of Ptp-Bl Length = 94		1e-11
1um7_A	113	Solution Structure Of The Third Pdz Domain Of Synap		2e-10
3jxt_A	104	Crystal Structure Of The Third Pdz Domain Of Sap-10		3e-10
1q3o_A	109	Crystal Structure Of The Shank Pdz-ligand Complex R		8e-10
3qjm_A	115	Structural Flexibility Of Shank Pdz Domain Is Impor		1e-09
2xkx_A	721	Single Particle Analysis Of Psd-95 In Negative Stai		1e-09
1i92_A	91	Structural Basis Of The Nherf Pdz1-Cftr Interaction		3e-09
3l4f_D	132	Crystal Structure Of Betapix Coiled-Coil Domain And		4e-09
3k82_A	98	Crystal Structure Of The Third Pdz Domain Of Psd-95		5e-09
1g9o_A	91	First Pdz Domain Of The Human Na+H+ EXCHANGER REGUL		6e-09
3i4w_A	104	Crystal Structure Of The Third Pdz Domain Of Psd-95		7e-09
2kv8_A	83	Solution Structure Ofrgs12 Pdz Domain Length = 83		7e-09
1gq5_A	91	Structural Determinants Of The Nherf Interaction Wi		7e-09
3r68_A	95	Molecular Analysis Of The Pdz3 Domain Of Pdzk1 Leng		9e-09
2he2_A	102	Crystal Structure Of The 3rd Pdz Domain Of Human Di		1e-08
1tp3_A	119	Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv		1e-08
1be9_A	119	The Third Pdz Domain From The Synaptic Protein Psd-		1e-08
2krg_A	216	Solution Structure Of Human Sodium HYDROGEN EXCHANG		1e-08
2ocs_A	88	The Crystal Structure Of The First Pdz Domain Of Hu		2e-08
3r69_A	89	Molecular Analysis Of The Interaction Of The Hdl-Re		2e-08
2jxo_A	98	Structure Of The Second Pdz Domain Of Nherf-1 Lengt		2e-08
2dls_A	93	Solution Structure Of The Pdz Domain Of Human Rho G		3e-08
1gq4_A	90	Structural Determinants Of The Nherf Interaction Wi		3e-08
2kjd_A	128	Solution Structure Of Extended Pdz2 Domain From Nhe		6e-08
2dkr_A	93	Solution Structure Of The Pdz Domain From Human Lin		8e-08
2x7z_A	99	Crystal Structure Of The Sap97 Pdz2 I342w C378a Mut		9e-08
2ozf_A	92	The Crystal Structure Of The 2nd Pdz Domain Of The		1e-07
3rl8_A	105	Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc L		1e-07
2oqs_A	97	Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV		1e-07
2byg_A	117	2nd Pdz Domain Of Discs Large Homologue 2 Length =		1e-07
4g69_A	100	Structure Of The Human Discs Large 1 Pdz2 - Adenoma		1e-07
2fe5_A	94	The Crystal Structure Of The Second Pdz Domain Of H		2e-07
2v90_A	96	Crystal Structure Of The 3rd Pdz Domain Of Intestin		2e-07
3o5n_A	112	Tetrahydroquinoline Carboxylates Are Potent Inhibit		3e-07
3ngh_A	106	Molecular Analysis Of The Interaction Of The Hdl Re		3e-07
2aww_A	105	Synapse Associated Protein 97 Pdz2 Domain Variant C		3e-07
2awx_A	105	Synapse Associated Protein 97 Pdz2 Domain Variant C		3e-07
2awu_A	105	Synapse Associated Protein 97 Pdz2 Domain Variant C		4e-07
2edz_A	114	Solution Structures Of The Pdz Domain Of Mus Muscul		6e-07
4amh_A	106	Influence Of Circular Permutation On The Folding Pa		6e-07
2he4_A	90	The Crystal Structure Of The Second Pdz Domain Of H		6e-07
2g2l_A	105	Crystal Structure Of The Second Pdz Domain Of Sap97		6e-07
1qlc_A	95	Solution Structure Of The Second Pdz Domain Of Post		6e-07
2omj_A	89	Solution Structure Of Larg Pdz Domain Length = 89		8e-07
2i0l_A	84	X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The		1e-06
4f8k_A	109	Molecular Analysis Of The Interaction Between The P		1e-06
2eej_A	96	Solution Structure Of Fourth Pdz Domain Of Pdz Doma		2e-06
2d90_A	102	Solution Structure Of The Third Pdz Domain Of Pdz D		2e-06
3gsl_A	196	Crystal Structure Of Psd-95 Tandem Pdz Domains 1 An		3e-06
3zrt_A	199	Crystal Structure Of Human Psd-95 Pdz1-2 Length = 1		5e-06
2ka9_A	189	Solution Structure Of Psd-95 Pdz12 Complexed With C		8e-06
1pdr_A	99	Crystal Structure Of The Third Pdz Domain From The		1e-05
2i0i_A	85	X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The		1e-05
2kqf_A	96	Solution Structure Of Mast205-Pdz Complexed With Th		2e-05
2pnt_A	98	Crystal Structure Of The Pdz Domain Of Human Grasp		2e-05
3tmh_A	87	Crystal Structure Of Dual-Specific A-Kinase Anchori		3e-05
2fne_A	117	The Crystal Structure Of The 13th Pdz Domain Of Mpd		3e-05
2kom_A	121	Solution Structure Of Humar Par-3b Pdz2 (Residues 4		4e-05
2yuy_A	126	Solution Structure Of Pdz Domain Of Rho Gtpase Acti		4e-05
2egk_A	101	Crystal Structure Of Tamalin Pdz-Intrinsic Ligand F		4e-05
2vsp_A	91	Crystal Structure Of The Fourth Pdz Domain Of Pdz D		4e-05
2ego_A	96	Crystal Structure Of Tamalin Pdz Domain Length = 96		4e-05
2dmz_A	129	Solution Structure Of The Third Pdz Domain Of Human		5e-05
2koj_A	111	Solution Structure Of Mouse Par-3 Pdz2 (Residues 45		5e-05
2r4h_B	112	Crystal Structure Of A C1190s Mutant Of The 6th Pdz		5e-05
2z17_A	104	Crystal Sturcture Of Pdz Domain From Human Pleckstr		9e-05
2dlu_A	111	Solution Structure Of The Second Pdz Domain Of Huma		1e-04
2djt_A	104	Solution Structures Of The Pdz Domain Of Human Unna		1e-04
1wi2_A	104	Solution Structure Of The Pdz Domain From Riken Cdn		1e-04
3k1r_A	192	Structure Of Harmonin Npdz1 In Complex With The Sam		2e-04
3ps4_A	102	Pdz Domain From Human Microtubule-Associated Serine		2e-04
2iwo_A	120	12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz		3e-04
1wfv_A	103	Solution Structure Of The Fifth Pdz Domain Of Human		4e-04
2i04_A	85	X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The		6e-04
2w4f_A	97	Crystal Structure Of The First Pdz Domain Of Human		8e-04
1x5q_A	110	Solution Structure Of The First Pdz Domain Of Scrib		8e-04
1uew_A	114	Solution Structure Of The Forth Pdz Domain Of Human		8e-04
2kpk_A	129	Magi-1 Pdz1 Length = 129		8e-04
2fcf_A	103	The Crystal Structure Of The 7th Pdz Domain Of Mpdz		9e-04

>pdb|3QDO|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27 (Snx27) Fused To The Gly-Gly Linker Followed By C-Terminal (Eseskv) Of Girk3 Length = 109

Iteration: 1
 Score =  153 bits (387), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 76/103 (73%), Positives = 89/103 (86%)
Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
           PR V+I KS++G+GFNVRGQVSEGGQLRSINGELYAPLQHVSAVL GGAA++AG+RKGDR
Sbjct: 7   PRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDR 66
Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERL 111
           IL VN VNVEGATHKQVV+LI++G   L LTV+SV  E   ++
Sbjct: 67  ILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSVGGESESKV 109

>pdb|3QGL|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27 (Snx27) In Complex With The Eseskv Peptide Corresponding To The C-Terminal Tail Of Girk3 Length = 101

Iteration: 1
 Score =  151 bits (382), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 75/95 (78%), Positives = 86/95 (90%)
Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
           PR V+I KS++G+GFNVRGQVSEGGQLRSINGELYAPLQHVSAVL GGAA++AG+RKGDR
Sbjct: 7   PRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDR 66
Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISV 103
           IL VN VNVEGATHKQVV+LI++G   L LTV+SV
Sbjct: 67  ILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSV 101

>pdb|1OZI|A Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl Length = 99

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 41/90 (45%), Positives = 58/90 (64%), Gaps = 7/90 (7%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSI-NGELYAPLQHVSAVLAGGAAEKAG-IRKGDR 68
          EV++AK+D   G +V     +GG   S+ +G +Y     V A++  GAAE  G I KGDR
Sbjct: 7  EVELAKTDGSLGISVTVLFDKGGVNTSVRHGGIY-----VKAIIPKGAAESDGRIHKGDR 61
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSL 98
          +LAVN V++EGATHKQ VE +++ G V+ L
Sbjct: 62 VLAVNGVSLEGATHKQAVETLRNTGQVVHL 91

>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2 Domain (Pdz2b) Of Ptp-Bas (Hptp1e) Length = 108

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 42/90 (46%), Positives = 58/90 (64%), Gaps = 7/90 (7%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSI-NGELYAPLQHVSAVLAGGAAEKAG-IRKGDR 68
          EV++AK+D   G +V     +GG   S+ +G +Y     V AV+  GAAE  G I KGDR
Sbjct: 12 EVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIY-----VKAVIPQGAAESDGRIHKGDR 66
Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSL 98
          +LAVN V++EGATHKQ VE +++ G V+ L
Sbjct: 67 VLAVNGVSLEGATHKQAVETLRNTGQVVHL 96

>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand From The Apc Protein Length = 102

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/89 (44%), Positives = 57/89 (64%), Gaps = 10/89 (11%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
          EV++AK+D   G +V G V+   +    +G +Y     V A++  GAAE  G I KGDR+
Sbjct: 15 EVELAKTDGSLGISVTGGVNTSVR----HGGIY-----VKAIIPKGAAESDGRIHKGDRV 65
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSL 98
          LAVN V++EGATHKQ VE +++ G V+ L
Sbjct: 66 LAVNGVSLEGATHKQAVETLRNTGQVVHL 94

>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human Phosphatase Hptp1e Complexed With A Peptide Length = 96

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/89 (46%), Positives = 57/89 (64%), Gaps = 10/89 (11%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
          EV++AK+D   G +V G V+   +    +G +Y     V AV+  GAAE  G I KGDR+
Sbjct: 8  EVELAKNDNSLGISVTGGVNTSVR----HGGIY-----VKAVIPQGAAESDGRIHKGDRV 58
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSL 98
          LAVN V++EGATHKQ VE +++ G V+ L
Sbjct: 59 LAVNGVSLEGATHKQAVETLRNTGQVVHL 87

>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human Phosphatase Hptp1e Length = 96

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/89 (46%), Positives = 57/89 (64%), Gaps = 10/89 (11%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
          EV++AK+D   G +V G V+   +    +G +Y     V AV+  GAAE  G I KGDR+
Sbjct: 8  EVELAKNDNSLGISVTGGVNTSVR----HGGIY-----VKAVIPQGAAESDGRIHKGDRV 58
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSL 98
          LAVN V++EGATHKQ VE +++ G V+ L
Sbjct: 59 LAVNGVSLEGATHKQAVETLRNTGQVVHL 87

>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl Length = 94

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/89 (44%), Positives = 57/89 (64%), Gaps = 10/89 (11%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
          EV++AK+D   G +V G V+   +    +G +Y     V A++  GAAE  G I KGDR+
Sbjct: 7  EVELAKTDGSLGISVTGGVNTSVR----HGGIY-----VKAIIPKGAAESDGRIHKGDRV 57
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSL 98
          LAVN V++EGATHKQ VE +++ G V+ L
Sbjct: 58 LAVNGVSLEGATHKQAVETLRNTGQVVHL 86

>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse- Associated Protein 102 Length = 113

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 60/113 (53%), Gaps = 17/113 (15%)
Query: 9   PREVQIAKSDTGFGFN-VRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKG 66
           PR++ + K  TG GFN V G+  EG                VS +LAGG A+ +G +R+G
Sbjct: 16  PRKIILHKGSTGLGFNIVGGEDGEG--------------IFVSFILAGGPADLSGELRRG 61
Query: 67  DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSG 119
           DRIL+VN VN+  ATH+Q    +K  G  +++ V    PEE  R E     SG
Sbjct: 62  DRILSVNGVNLRNATHEQAAAALKRAGQSVTI-VAQYRPEEYSRFESSGPSSG 113

>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In Complex With A Fluorogenic Peptide-Based Ligand Length = 104

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 58/106 (54%), Gaps = 17/106 (16%)
Query: 9   PREVQIAKSDTGFGFN-VRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKG 66
           PR++ + K  TG GFN V G+  EG                VS +LAGG A+ +G +R+G
Sbjct: 13  PRKIILHKGSTGLGFNIVGGEDGEG--------------IFVSFILAGGPADLSGELRRG 58
Query: 67  DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLE 112
           DRIL+VN VN+  ATH+Q    +K  G  +++ V    PEE  R E
Sbjct: 59  DRILSVNGVNLRNATHEQAAAALKRAGQSVTI-VAQYRPEEYSRFE 103

>pdb|1Q3O|A Chain A, Crystal Structure Of The Shank Pdz-ligand Complex Reveals A Class I Pdz Interaction And A Novel Pdz-pdz Dimerization Length = 109

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 10  REVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
           + V + K D+ GFGF +RG  ++           +  LQ++ +V  GG A +AG+R GD 
Sbjct: 9   KTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDF 68
Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVS 104
           ++ VN  NV    H+QVV +I+ GG+ L + V+ V+
Sbjct: 69  LIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVT 104

>pdb|3QJM|A Chain A, Structural Flexibility Of Shank Pdz Domain Is Important For Its Binding To Different Ligands Length = 115

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 10  REVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
           + V + K D+ GFGF +RG  ++           +  LQ++ +V  GG A +AG+R GD 
Sbjct: 9   KTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDF 68
Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVS 104
           ++ VN  NV    H+QVV +I+ GG+ L + V+ V+
Sbjct: 69  LIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVT 104

>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain Length = 721

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 15/105 (14%)
Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
           PR + I +  TG GFN+ G     G               +S +LAGG A+ +G +RKGD
Sbjct: 308 PRRIVIHRGSTGLGFNIVGGEDGEGIF-------------ISFILAGGPADLSGELRKGD 354
Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLE 112
           +IL+VN V++  A+H+Q    +K+ G  +++ +    PEE  R E
Sbjct: 355 QILSVNGVDLRNASHEQAAIALKNAGQTVTI-IAQYKPEEYSRFE 398

>pdb|1I92|A Chain A, Structural Basis Of The Nherf Pdz1-Cftr Interaction Length = 91

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 15/103 (14%)
Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
           PR   + K   G+GF++ G+  + GQ             ++  V  G  AEKAG+  GDR
Sbjct: 4   PRLCCLEKGPNGYGFHLHGEKGKLGQ-------------YIRLVEPGSPAEKAGLLAGDR 50
Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERL 111
           ++ VN  NVE  TH+QVV  I++  + + L V  V PE+  RL
Sbjct: 51  LVEVNGENVEKETHQQVVSRIRAALNAVRLLV--VDPEQDTRL 91

>pdb|3L4F|D Chain D, Crystal Structure Of Betapix Coiled-Coil Domain And Shank Pdz Complex Length = 132

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 10  REVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
           + V + K D+ GFGF +RG  ++           +  LQ++ +V  GG A +AG+R GD 
Sbjct: 29  KTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDF 88
Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVS 104
           ++ VN  NV    H+QVV +I+ GG+ L + V+ V+
Sbjct: 89  LIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVT 124

>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95 Length = 98

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 17/106 (16%)
Query: 9   PREVQIAKSDTGFGFN-VRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKG 66
           PR + I +  TG GFN V G+  EG                +S +LAGG A+ +G +RKG
Sbjct: 7   PRRIVIHRGSTGLGFNIVGGEXGEG--------------IFISFILAGGPADLSGELRKG 52
Query: 67  DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLE 112
           D+IL+VN V++  A+H+Q    +K+ G  +++ +    PEE  R E
Sbjct: 53  DQILSVNGVDLRNASHEQAAIALKNAGQTVTI-IAQYKPEEYSRFE 97

>pdb|1G9O|A Chain A, First Pdz Domain Of The Human Na+H+ EXCHANGER REGULATORY Factor Length = 91

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 15/103 (14%)
Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
           PR   + K   G+GF++ G+  + GQ             ++  V  G  AEKAG+  GDR
Sbjct: 4   PRLCCLEKGPNGYGFHLHGEKGKLGQ-------------YIRLVEPGSPAEKAGLLAGDR 50
Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERL 111
           ++ VN  NVE  TH+QVV  I++  + + L V  V PE  E+L
Sbjct: 51  LVEVNGENVEKETHQQVVSRIRAALNAVRLLV--VDPETDEQL 91

>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95 Length = 104

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 17/106 (16%)
Query: 9   PREVQIAKSDTGFGFN-VRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKG 66
           PR + I +  TG GFN V G+  EG                +S +LAGG A+ +G +RKG
Sbjct: 12  PRRIVIHRGSTGLGFNIVGGEXGEG--------------IFISFILAGGPADLSGELRKG 57
Query: 67  DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLE 112
           D+IL+VN V++  A+H+Q    +K+ G  +++ +    PEE  R E
Sbjct: 58  DQILSVNGVDLRNASHEQAAIALKNAGQTVTI-IAQYKPEEYSRFE 102

>pdb|2KV8|A Chain A, Solution Structure Ofrgs12 Pdz Domain Length = 83

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 16/91 (17%)
Query: 10  REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRI 69
           R V++A+   G+GF + GQ               AP   +S V+ G  A+  G+R GD+I
Sbjct: 4   RSVEVARGRAGYGFTLSGQ---------------APCV-LSCVMRGSPADFVGLRAGDQI 47
Query: 70  LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           LAVN +NV+ A+H+ VV+LI     VL + +
Sbjct: 48  LAVNEINVKKASHEDVVKLIGKCSGVLHMVI 78

>pdb|1GQ5|A Chain A, Structural Determinants Of The Nherf Interaction With Beta2- Ar And Pdgfr Length = 91

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 15/99 (15%)
Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
           PR   + K   G+GF++ G+  + GQ             ++  V  G  AEKAG+  GDR
Sbjct: 4   PRLCCLEKGPNGYGFHLHGEKGKLGQ-------------YIRLVEPGSPAEKAGLLAGDR 50
Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEE 107
           ++ VN  NVE  TH+QVV  I++  + + L V  V PEE
Sbjct: 51  LVEVNGENVEKETHQQVVSRIRAALNAVRLLV--VDPEE 87

>pdb|3R68|A Chain A, Molecular Analysis Of The Pdz3 Domain Of Pdzk1 Length = 95

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
           PR V I K   G+GF +R    + GQ+             +  +  G  AE AG++  D 
Sbjct: 6   PRVVVIKKGSNGYGFYLRAGPEQKGQI-------------IKDIEPGSPAEAAGLKNNDL 52
Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAER 110
           ++AVN  +VE   H  VVE+I+ GGD  +L V+    E   R
Sbjct: 53  VVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKELERPHR 94

>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs Large Homologue 2, Dlg2 Length = 102

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 17/106 (16%)
Query: 9   PREVQIAKSDTGFGFN-VRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKG 66
           PR+V + K  TG GFN V G+  EG                VS +LAGG A+ +G +++G
Sbjct: 4   PRKVVLHKGSTGLGFNIVGGEDGEG--------------IFVSFILAGGPADLSGELQRG 49
Query: 67  DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLE 112
           D+IL+VN +++ GA+H+Q    +K  G  +++ +    PE+  R E
Sbjct: 50  DQILSVNGIDLRGASHEQAAAALKGAGQTVTI-IAQYQPEDYARFE 94

>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv Peptide Ligand Length = 119

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 17/106 (16%)
Query: 9   PREVQIAKSDTGFGFN-VRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKG 66
           PR + I +  TG GFN V G+  EG                +S +LAGG A+ +G +RKG
Sbjct: 15  PRRIVIHRGSTGLGFNIVGGEDGEG--------------IFISFILAGGPADLSGELRKG 60
Query: 67  DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLE 112
           D+IL+VN V++  A+H+Q    +K+ G  +++ +    PEE  R E
Sbjct: 61  DQILSVNGVDLRNASHEQAAIALKNAGQTVTI-IAQYKPEEYSRFE 105

>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In Complex With A C-Terminal Peptide Derived From Cript. Length = 119

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 58/105 (55%), Gaps = 15/105 (14%)
Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
           PR + I +  TG GFN+            I GE    +  +S +LAGG A+ +G +RKGD
Sbjct: 15  PRRIVIHRGSTGLGFNI------------IGGEDGEGI-FISFILAGGPADLSGELRKGD 61
Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLE 112
           +IL+VN V++  A+H+Q    +K+ G  +++ +    PEE  R E
Sbjct: 62  QILSVNGVDLRNASHEQAAIALKNAGQTVTI-IAQYKPEEYSRFE 105

>pdb|2KRG|A Chain A, Solution Structure Of Human Sodium HYDROGEN EXCHANGE Regulatory Factor 1(150-358) Length = 216

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 13/93 (13%)
Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
           PR   + K  +G+GFN+    S+ GQ              + +V     AE +G+R  DR
Sbjct: 10  PRLCTMKKGPSGYGFNLHSDKSKPGQF-------------IRSVDPDSPAEASGLRAQDR 56
Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
           I+ VN V +EG  H  VV  I++GGD   L V+
Sbjct: 57  IVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVV 89

>pdb|2OCS|A Chain A, The Crystal Structure Of The First Pdz Domain Of Human Nherf-2 (slc9a3r2) Length = 88

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 13/83 (15%)
Query: 9  PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
          PR  ++ + + G+GF++ G+    GQ              +  V  G  AE A +R GDR
Sbjct: 2  PRLCRLVRGEQGYGFHLHGEKGRRGQF-------------IRRVEPGSPAEAAALRAGDR 48
Query: 69 ILAVNNVNVEGATHKQVVELIKS 91
          ++ VN VNVEG TH QVV+ IK+
Sbjct: 49 LVEVNGVNVEGETHHQVVQRIKA 71

>pdb|3R69|A Chain A, Molecular Analysis Of The Interaction Of The Hdl-Receptor Sr-Bi With The Pdz3 Domain Of Its Adaptor Protein Pdzk1 Length = 89

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 13/93 (13%)
Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
           PR V I K   G+GF +R    + GQ+             +  +  G  AE AG++  D 
Sbjct: 3   PRVVVIKKGSNGYGFYLRAGPEQKGQI-------------IKDIEPGSPAEAAGLKNNDL 49
Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
           ++AVN  +VE   H  VVE+I+ GGD  +L V+
Sbjct: 50  VVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVL 82

>pdb|2JXO|A Chain A, Structure Of The Second Pdz Domain Of Nherf-1 Length = 98

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 15/100 (15%)
Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQ-LRSINGELYAPLQHVSAVLAGGAAEKAGIRKGD 67
           PR   + K  +G+GFN+    S+ GQ +RS++ +                AE +G+R  D
Sbjct: 10  PRLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPD--------------SPAEASGLRAQD 55
Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEE 107
           RI+ VN V +EG  H  VV  I++GGD   L V+    +E
Sbjct: 56  RIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETDE 95

>pdb|2DLS|A Chain A, Solution Structure Of The Pdz Domain Of Human Rho Guanine Nucleotide Exchange Factor 11 Length = 93

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/92 (40%), Positives = 50/92 (54%), Gaps = 17/92 (18%)
Query: 10  REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRI 69
           R V I K   GFGF V G                  +  V +V  GGAA KAG+++GDRI
Sbjct: 10  RCVIIQKDQHGFGFTVSGD----------------RIVLVQSVRPGGAAMKAGVKEGDRI 53
Query: 70  LAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
           + VN   V  ++H +VV+LIKSG  V +LT++
Sbjct: 54  IKVNGTMVTNSSHLEVVKLIKSGAYV-ALTLL 84

>pdb|1GQ4|A Chain A, Structural Determinants Of The Nherf Interaction With Beta2ar And Pdgfr Length = 90

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 15/98 (15%)
Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
           PR   + K   G+GF++ G+  + GQ             ++  V  G  AEKAG+  GDR
Sbjct: 3   PRLCCLEKGPNGYGFHLHGEKGKLGQ-------------YIRLVEPGSPAEKAGLLAGDR 49
Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPE 106
           ++ VN  NVE  TH+QVV  I++  + + L V  V PE
Sbjct: 50  LVEVNGENVEKETHQQVVSRIRAALNAVRLLV--VDPE 85

>pdb|2KJD|A Chain A, Solution Structure Of Extended Pdz2 Domain From Nherf1 (150- 270) Length = 128

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 13/93 (13%)
Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
           PR   + K  +G+GFN+    S+ GQ              + +V     AE +G+R  DR
Sbjct: 10  PRLCTMKKGPSGYGFNLHSDKSKPGQF-------------IRSVDPDSPAEASGLRAQDR 56
Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
           I+ VN V +EG  H  VV  I++GGD   L V+
Sbjct: 57  IVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVV 89

>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7 Homolog B Length = 93

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 52/81 (64%), Gaps = 13/81 (16%)
Query: 12 VQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEK-AGIRKGDRIL 70
          V++ K+D G GFN+ G             E  +P+ ++S V+ GG A++  G+++GD++L
Sbjct: 9  VELPKTDEGLGFNIMGGK-----------EQNSPI-YISRVIPGGVADRHGGLKRGDQLL 56
Query: 71 AVNNVNVEGATHKQVVELIKS 91
          +VN V+VEG  H++ VEL+K+
Sbjct: 57 SVNGVSVEGEQHEKAVELLKA 77

>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant Protein Domain Length = 99

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 8/91 (8%)
Query: 11  EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
           E+++ K   G GF++ G V  G Q    +  +Y     V+ ++ GGAA K G ++ GD++
Sbjct: 11  EIKLIKGPKGLGFSIAGGV--GNQHWPGDNSIY-----VTKIIEGGAAHKDGKLQIGDKL 63
Query: 70  LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           LAVNNV +E  TH++ V  +K+  D + L V
Sbjct: 64  LAVNNVALEEVTHEEAVTALKNTSDFVYLKV 94

>pdb|2OZF|A Chain A, The Crystal Structure Of The 2nd Pdz Domain Of The Human Nherf-1 (Slc9a3r1) Length = 92

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 15/94 (15%)
Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQ-LRSINGELYAPLQHVSAVLAGGAAEKAGIRKGD 67
           PR   + K  +G+GFN+    S+ GQ +RS++ +                AE +G+R  D
Sbjct: 5   PRLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPD--------------SPAEASGLRAQD 50
Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
           RI+ VN V +EG  H  VV  I++GGD   L V+
Sbjct: 51  RIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVV 84

>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc Length = 105

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 8/91 (8%)
Query: 11  EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
           E+++ K   G GF++ G V  G Q    +  +Y     V+ ++ GGAA K G ++ GD++
Sbjct: 14  EIKLIKGPKGLGFSIAGGV--GNQHIPGDNSIY-----VTKIIEGGAAHKDGKLQIGDKL 66
Query: 70  LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           LAVNNV +E  TH++ V  +K+  D + L V
Sbjct: 67  LAVNNVCLEEVTHEEAVTALKNTSDFVYLKV 97

>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18 Papillomavirus E6 Peptide Length = 97

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 8/91 (8%)
Query: 11  EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
           E+++ K   G GF++ G V  G Q    +  +Y     V+ ++ GGAA K G ++ GD++
Sbjct: 2   EIKLIKGPKGLGFSIAGGV--GNQHIPGDNSIY-----VTKIIEGGAAHKDGKLQIGDKL 54
Query: 70  LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           LAVNNV +E  TH++ V  +K+  D + L V
Sbjct: 55  LAVNNVCLEEVTHEEAVTALKNTSDFVYLKV 85

>pdb|2BYG|A Chain A, 2nd Pdz Domain Of Discs Large Homologue 2 Length = 117

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 55/91 (60%), Gaps = 8/91 (8%)
Query: 11  EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
           E+++ K   G GF++ G V  G Q    +  +Y     V+ ++ GGAA+K G ++ GDR+
Sbjct: 27  EIKLFKGPKGLGFSIAGGV--GNQHIPGDNSIY-----VTKIIDGGAAQKDGRLQVGDRL 79
Query: 70  LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           L VNN ++E  TH++ V ++K+  +V+ L V
Sbjct: 80  LMVNNYSLEEVTHEEAVAILKNTSEVVYLKV 110

>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous Polyposis Coli Cytoskeletal Polarity Complex Length = 100

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 8/91 (8%)
Query: 11  EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
           E+++ K   G GF++ G V  G Q    +  +Y     V+ ++ GGAA K G ++ GD++
Sbjct: 12  EIKLIKGPKGLGFSIAGGV--GNQHIPGDNSIY-----VTKIIEGGAAHKDGKLQIGDKL 64
Query: 70  LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           LAVNNV +E  TH++ V  +K+  D + L V
Sbjct: 65  LAVNNVCLEEVTHEEAVTALKNTSDFVYLKV 95

>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human Dlg3 Length = 94

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 53/91 (58%), Gaps = 8/91 (8%)
Query: 11  EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
           EV + K   G GF++ G +  G Q    +  +Y     ++ ++ GGAA+K G ++ GDR+
Sbjct: 6   EVNLLKGPKGLGFSIAGGI--GNQHIPGDNSIY-----ITKIIEGGAAQKDGRLQIGDRL 58
Query: 70  LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           LAVNN N++   H++ V  +K+  D++ L V
Sbjct: 59  LAVNNTNLQDVRHEEAVASLKNTSDMVYLKV 89

>pdb|2V90|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Intestine- And Kidney-enriched Pdz Domain Ikepp (pdzd3) Length = 96

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/102 (35%), Positives = 54/102 (52%), Gaps = 13/102 (12%)
Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
           PR + + K   GFGF +R +    G+          P Q +  V  G  A+KAG++ GDR
Sbjct: 4   PRCLHLEKGPQGFGFLLREEKGLDGR----------PGQFLWEVDPGLPAKKAGMQAGDR 53
Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAER 110
           ++AV   +VEG  H++ V  I+  G  +SLTV+     EA+R
Sbjct: 54  LVAVAGESVEGLGHEETVSRIQGQGSCVSLTVVD---PEADR 92

>pdb|3O5N|A Chain A, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of The Shank Pdz Domain, A Putative Target In Autism Disorders Length = 112

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 20  GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEG 79
           GFGF +RG  +E           +  LQ++ +V   G A +AG+R GD ++ VN VNV  
Sbjct: 23  GFGFVLRGAKAETPIEEFTPTPAFPALQYLESVDVEGVAWRAGLRTGDFLIEVNGVNVVK 82
Query: 80  ATHKQVVELIKSGGDVLSLTVISVS--PEE 107
             HKQVV LI+ GG+ L + V+SV+  PEE
Sbjct: 83  VGHKQVVGLIRQGGNRLVMKVVSVTRKPEE 112

>pdb|3NGH|A Chain A, Molecular Analysis Of The Interaction Of The Hdl Receptor Sr-Bi With The Adaptor Protein Pdzk1 Length = 106

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 14/95 (14%)
Query: 8   GPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKG 66
           GPRE +++K +   +GF +R +    G L             +  +  G  AEKAG+  G
Sbjct: 1   GPRESKLSKQEGQNYGFFLRIEKDTDGHL-------------IRVIEEGSPAEKAGLLDG 47
Query: 67  DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
           DR+L +N V V+   H QVVEL++  G+ ++L V+
Sbjct: 48  DRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVL 82

>pdb|2AWW|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g With C-Terminal Glur-A Peptide Length = 105

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 54/91 (59%), Gaps = 8/91 (8%)
Query: 11  EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
           E+++ K   G GF++ G V  G Q    +  +Y     V++++ GGAA K G ++ GD++
Sbjct: 6   EIKLIKGPKGLGFSIAGGV--GNQHIPGDNSIY-----VTSIVEGGAAHKDGKLQIGDKL 58
Query: 70  LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           LAVN+V +E  TH++ V  +K+  D + L V
Sbjct: 59  LAVNSVGLEEVTHEEAVTALKNTSDFVYLKV 89

>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s Length = 105

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 54/91 (59%), Gaps = 8/91 (8%)
Query: 11  EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
           E+++ K   G GF++ G V  G Q    +  +Y     V+ ++ GGAA K G ++ GD++
Sbjct: 6   EIKLIKGPKGLGFSIAGGV--GNQHIPGDNSIY-----VTKIIEGGAAHKDGKLQIGDKL 58
Query: 70  LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           LAVN+V++E  TH++ V  +K+  D + L V
Sbjct: 59  LAVNSVSLEEVTHEEAVTALKNTSDFVYLKV 89

>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g Length = 105

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 8/91 (8%)
Query: 11  EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
           E+++ K   G GF++ G V  G Q    +  +Y     V+ ++ GGAA K G ++ GD++
Sbjct: 6   EIKLIKGPKGLGFSIAGGV--GNQHIPGDNSIY-----VTKIIEGGAAHKDGKLQIGDKL 58
Query: 70  LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           LAVN+V +E  TH++ V  +K+  D + L V
Sbjct: 59  LAVNSVGLEEVTHEEAVTALKNTSDFVYLKV 89

>pdb|2EDZ|A Chain A, Solution Structures Of The Pdz Domain Of Mus Musculus Pdz Domain-Containing Protein 1 Length = 114

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 14/94 (14%)
Query: 9   PREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGD 67
           PRE +++K +   +GF +R +    G L             +  +  G  AEKAG+  GD
Sbjct: 14  PRECKLSKQEGQNYGFFLRIEKDTDGHL-------------IRVIEEGSPAEKAGLLDGD 60
Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
           R+L +N V V+   H QVVEL++  G+ ++L V+
Sbjct: 61  RVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVL 94

>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway Of A Pdz Domain Length = 106

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 10/99 (10%)
Query: 14  IAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAV 72
           + +   G GF++ G V  G Q    +  +Y     V+ ++ GGAA K G ++ GD++LAV
Sbjct: 8   VPRGSKGLGFSIAGGV--GNQHWPGDNSIY-----VTKIIEGGAAHKDGKLQIGDKLLAV 60
Query: 73  NNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERL 111
           NNV +E  TH++ V  +K+  D + L V    P   E++
Sbjct: 61  NNVALEEVTHEEAVTALKNTSDFVYLKV--AKPGSGEKI 97

>pdb|2HE4|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human Nherf-2 (Slc9a3r2) Interacting With A Mode 1 Pdz Binding Motif Length = 90

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 13/96 (13%)
Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
           PR   + K   G+GFN+    S              P Q++ +V  G  A ++G+R  DR
Sbjct: 5   PRLCHLRKGPQGYGFNLHSDKSR-------------PGQYIRSVDPGSPAARSGLRAQDR 51
Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVS 104
           ++ VN  NVEG  H +VV  IK+  D   L V+  S
Sbjct: 52  LIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 87

>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In Complex With A Glur-A C-Terminal Peptide Length = 105

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 8/91 (8%)
Query: 11  EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
           E+++ K   G GF++ G V  G Q    +  +Y     V+ ++ GGAA K G ++ GD++
Sbjct: 6   EIKLIKGPKGLGFSIAGGV--GNQHIPGDNSIY-----VTKIIEGGAAHKDGKLQIGDKL 58
Query: 70  LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           LAVN+V +E  TH++ V  +K+  D + L V
Sbjct: 59  LAVNSVCLEEVTHEEAVTALKNTSDFVYLKV 89

>pdb|1QLC|A Chain A, Solution Structure Of The Second Pdz Domain Of Postsynaptic Density-95 Length = 95

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 8/91 (8%)
Query: 11  EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
           E+++ K   G GF++ G V  G Q    +  +Y     V+ ++ GGAA K G ++ GD+I
Sbjct: 6   EIKLIKGPKGLGFSIAGGV--GNQHIPGDNSIY-----VTKIIEGGAAHKDGRLQIGDKI 58
Query: 70  LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           LAVN+V +E   H+  V  +K+  DV+ L V
Sbjct: 59  LAVNSVGLEDVMHEDAVAALKNTYDVVYLKV 89

>pdb|2OMJ|A Chain A, Solution Structure Of Larg Pdz Domain Length = 89

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/96 (39%), Positives = 48/96 (50%), Gaps = 17/96 (17%)
Query: 10  REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRI 69
           R V I K D GFG  V G                 P+  V +V   GAA +AG++ GDRI
Sbjct: 9   RCVIIQKDDNGFGLTVSGD---------------NPV-FVQSVKEDGAAMRAGVQTGDRI 52
Query: 70  LAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSP 105
           + VN   V  + H +VV+LIKSG  V +LTV    P
Sbjct: 53  IKVNGTLVTHSNHLEVVKLIKSGSYV-ALTVQGRPP 87

>pdb|2I0L|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C- Terminal Peptide Of Hpv18 E6. Length = 84

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 8/89 (8%)
Query: 11 EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
          E+++ K   G GF++ G V  G Q    +  +Y     V+ ++ GGAA K G ++ GD++
Sbjct: 1  EIKLIKGPKGLGFSIAGGV--GNQHIPGDNSIY-----VTKIIEGGAAHKDGKLQIGDKL 53
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSL 98
          LAVN+V +E  TH++ V  +K+  D + L
Sbjct: 54 LAVNSVCLEEVTHEEAVTALKNTSDFVYL 82

>pdb|4F8K|A Chain A, Molecular Analysis Of The Interaction Between The Prostacyclin Receptor And The First Pdz Domain Of Pdzk1 Length = 109

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 14/94 (14%)
Query: 9   PREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGD 67
           PRE +++K +   +GF +R +    G L             +  +  G  AEKAG+  GD
Sbjct: 3   PRESKLSKQEGQNYGFFLRIEKDTDGHL-------------IRVIEEGSPAEKAGLLDGD 49
Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
           R+L +N V V+   H QVVEL++  G+ ++L V+
Sbjct: 50  RVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVL 83

>pdb|2EEJ|A Chain A, Solution Structure Of Fourth Pdz Domain Of Pdz Domain Containing Protein 1 Length = 96

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 13/98 (13%)
Query: 3   STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG 62
           S+  +GP+  ++AK + G+GF+          L +I G    P   +  V  GG A+ AG
Sbjct: 2   SSGSSGPKLCRLAKGENGYGFH----------LNAIRG---LPGSFIKEVQKGGPADLAG 48
Query: 63  IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           +   D I+ VN VNV    +++VV+ I+S G  ++L V
Sbjct: 49  LEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLV 86

>pdb|2D90|A Chain A, Solution Structure Of The Third Pdz Domain Of Pdz Domain Containing Protein 1 Length = 102

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 13/105 (12%)
Query: 10  REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRI 69
           R V I K   G+GF +R    + GQ+             +  +  G  AE AG++  D +
Sbjct: 8   RVVVIKKGSNGYGFYLRAGPEQKGQI-------------IKDIEPGSPAEAAGLKNNDLV 54
Query: 70  LAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPP 114
           +AVN  +VE   H  VVE+I+ GGD  +L V+    E    L  P
Sbjct: 55  VAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKEAESIYSLSGP 99

>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2 Length = 196

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 56/102 (54%), Gaps = 10/102 (9%)
Query: 11  EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
           E+++ K   G GF++ G V  G Q    +  +Y     V+ ++ GGAA K G ++ GD+I
Sbjct: 103 EIKLIKGPKGLGFSIAGGV--GNQHIPGDNSIY-----VTKIIEGGAAHKDGRLQIGDKI 155
Query: 70  LAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERL 111
           LAVN+V +E   H+  V  +K+  DV+ L V    P  AE +
Sbjct: 156 LAVNSVGLEDVMHEDAVAALKNTYDVVYLKV--AKPSNAETM 195

>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2 Length = 199

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 8/91 (8%)
Query: 11  EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
           E+++ K   G GF++ G V  G Q    +  +Y     V+ ++ GGAA K G ++ GD+I
Sbjct: 110 EIKLIKGPKGLGFSIAGGV--GNQHIPGDNSIY-----VTKIIEGGAAHKDGRLQIGDKI 162
Query: 70  LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           LAVN+V +E   H+  V  +K+  DV+ L V
Sbjct: 163 LAVNSVGLEDVMHEDAVAALKNTYDVVYLKV 193

>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin Peptide Length = 189

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 8/91 (8%)
Query: 11  EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
           E+++ K   G GF++ G V  G Q    +  +Y     V+ ++ GGAA K G ++ GD+I
Sbjct: 100 EIKLIKGPKGLGFSIAGGV--GNQHIPGDNSIY-----VTKIIEGGAAHKDGRLQIGDKI 152
Query: 70  LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           LAVN+V +E   H+  V  +K+  DV+ L V
Sbjct: 153 LAVNSVGLEDVMHEDAVAALKNTYDVVYLKV 183

>pdb|1PDR|A Chain A, Crystal Structure Of The Third Pdz Domain From The Human Homolog Of Discs Large Protein Length = 99

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 59/104 (56%), Gaps = 17/104 (16%)
Query: 9   PREVQIAKSDTGFGFN-VRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKG 66
           PR+V + +  TG GFN V G+  EG                +S +LAGG A+ +G +RKG
Sbjct: 8   PRKVVLHRGSTGLGFNIVGGEDGEG--------------IFISFILAGGPADLSGELRKG 53
Query: 67  DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAER 110
           DRI++VN+V++  A+H+Q    +K+ G  +++ V    PEE  R
Sbjct: 54  DRIISVNSVDLRAASHEQAAAALKNAGQAVTI-VAQYRPEEYSR 96

>pdb|2I0I|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C- Terminal Peptide Of Hpv18 E6 Length = 85

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 14/91 (15%)
Query: 9  PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
          PR+V + +  TG GFN+ G     G               +S +LAGG A+ +G +RKGD
Sbjct: 5  PRKVVLHRGSTGLGFNIVGGEDGEGIF-------------ISFILAGGPADLSGELRKGD 51
Query: 68 RILAVNNVNVEGATHKQVVELIKSGGDVLSL 98
          RI++VN+V++  A+H+Q    +K+ G  +++
Sbjct: 52 RIISVNSVDLRAASHEQAAAALKNAGQAVTI 82

>pdb|2KQF|A Chain A, Solution Structure Of Mast205-Pdz Complexed With The C-Terminus Of A Rabies Virus G Protein Length = 96

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/96 (37%), Positives = 49/96 (51%), Gaps = 12/96 (12%)
Query: 14  IAKSDTGFGFNVRG-QVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAV 72
           I ++   +GF +R  +V  G      + ++Y     V  V  GG A +AG+R+GD I  V
Sbjct: 10  IHRAGKKYGFTLRAIRVYMG------DSDVYTVHHMVWHVEDGGPASEAGLRQGDLITHV 63
Query: 73  NNVNVEGATHKQVVELI-KSGGDVLSLTVISVSPEE 107
           N   V G  H +VVELI KSG  V     IS +P E
Sbjct: 64  NGEPVHGLVHTEVVELILKSGNKV----AISTTPLE 95

>pdb|2PNT|A Chain A, Crystal Structure Of The Pdz Domain Of Human Grasp (Grp1) In Complex With The C-Terminal Peptide Of The Metabotropic Glutamate Receptor Type 1 Length = 98

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 31/41 (75%)
Query: 58 AEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSL 98
          A+ AG+  GD I +VN +NVEG  H+++V++IK+ G+VL L
Sbjct: 50 AQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRL 90

>pdb|3TMH|A Chain A, Crystal Structure Of Dual-Specific A-Kinase Anchoring Protein 2 In Complex With Camp-Dependent Protein Kinase A Type Ii Alpha And Pdzk1 Length = 87

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 13/92 (14%)
Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
           P+  ++AK + G+GF+          L +I G    P   +  V  GG A+ AG+   D 
Sbjct: 4   PKLCRLAKGENGYGFH----------LNAIRG---LPGSFIKEVQKGGPADLAGLEDEDV 50
Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           I+ VN VNV    +++VV+ I+S G  ++L V
Sbjct: 51  IIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLV 82

>pdb|2FNE|A Chain A, The Crystal Structure Of The 13th Pdz Domain Of Mpdz Length = 117

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 55/94 (58%), Gaps = 10/94 (10%)
Query: 10  REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDR 68
           + + + +   G GF++ G         S +G+L  P+ +V  V A GAA + G +++GD+
Sbjct: 27  KSITLERGPDGLGFSIVGGYG------SPHGDL--PI-YVKTVFAKGAASEDGRLKRGDQ 77
Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVIS 102
           I+AVN  ++EG TH++ V ++K     ++L V+S
Sbjct: 78  IIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLS 111

>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues 451-549) Length = 121

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 55/93 (59%), Gaps = 13/93 (13%)
Query: 2   YSTQQTGPR-EVQIAKSDTGFGFNVRGQ-VSEGGQLRSINGELYAPLQHVSAVLAGGAAE 59
           Y+T++ G R  +Q+ K   G GF++  + V+ GG          AP+ +V  +L  GAA 
Sbjct: 23  YNTKKIGKRLNIQLKKGTEGLGFSITSRDVTIGGS---------API-YVKNILPRGAAI 72
Query: 60  KAG-IRKGDRILAVNNVNVEGATHKQVVELIKS 91
           + G ++ GDR++ VN V++ G + ++VV L++S
Sbjct: 73  QDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRS 105

>pdb|2YUY|A Chain A, Solution Structure Of Pdz Domain Of Rho Gtpase Activating Protein 21 Length = 126

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 24/113 (21%)
Query: 9   PREVQIAKSDTGFGFNVRGQV------------------SEGGQLRSINGELYAPLQ--H 48
           P+ V + ++  GFGF +R  +                  + GG+ R+       P+    
Sbjct: 9   PKTVTLKRTSQGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRN----RLEPMDTIF 64
Query: 49  VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
           V  V  GG A +AG+  GDRI+ VN  +V G T+ QV+ LI++    L L+V+
Sbjct: 65  VKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVM 117

>pdb|2EGK|A Chain A, Crystal Structure Of Tamalin Pdz-Intrinsic Ligand Fusion Protein Length = 101

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 32/44 (72%)
Query: 58  AEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
           A+ AG+  GD I +VN +NVEG  H+++V++IK+ G+VL L  +
Sbjct: 50  AQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLETL 93

>pdb|2VSP|A Chain A, Crystal Structure Of The Fourth Pdz Domain Of Pdz Domain- Containing Protein 1 Length = 91

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 13/92 (14%)
Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
           P+  ++AK + G+GF+          L +I G    P   +  V  GG A+ AG+   D 
Sbjct: 4   PKLCRLAKGENGYGFH----------LNAIRG---LPGSFIKEVQKGGPADLAGLEDEDV 50
Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           I+ VN VNV    +++VV+ I+S G  ++L V
Sbjct: 51  IIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLV 82

>pdb|2EGO|A Chain A, Crystal Structure Of Tamalin Pdz Domain Length = 96

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 31/41 (75%)
Query: 58 AEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSL 98
          A+ AG+  GD I +VN +NVEG  H+++V++IK+ G+VL L
Sbjct: 50 AQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRL 90

>pdb|2DMZ|A Chain A, Solution Structure Of The Third Pdz Domain Of Human Inad- Like Protein Length = 129

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 12/76 (15%)
Query: 48  HVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI----- 101
           +V +V+ G AA   G I+  D+I+AV+ VN++G  +  VVE++++ G V+ LT++     
Sbjct: 49  YVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVRRKTS 108
Query: 102 -SVSPEEAERLEPPDD 116
            S SP     LEPP D
Sbjct: 109 SSTSP-----LEPPSD 119

>pdb|2KOJ|A Chain A, Solution Structure Of Mouse Par-3 Pdz2 (Residues 450-558) Length = 111

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 56/94 (59%), Gaps = 13/94 (13%)
Query: 1  MYSTQQTGPR-EVQIAKSDTGFGFNVRGQ-VSEGGQLRSINGELYAPLQHVSAVLAGGAA 58
          +Y+T++ G R  +Q+ K   G GF++  + V+ GG          AP+ +V  +L  GAA
Sbjct: 3  VYNTKKVGKRLNIQLKKGTEGLGFSITSRDVTIGGS---------API-YVKNILPRGAA 52
Query: 59 EKAG-IRKGDRILAVNNVNVEGATHKQVVELIKS 91
           + G ++ GDR++ VN V++ G + ++VV L++S
Sbjct: 53 IQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRS 86

>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain Of Human Membrane Associated Guanylate Kinase Length = 112

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 13/83 (15%)
Query: 12 VQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRIL 70
          V++ +   GFGF++RG        R  N +LY     V  +   G AE++G +R GD IL
Sbjct: 28 VELERGAKGFGFSLRGG-------REYNMDLY-----VLRLAEDGPAERSGKMRIGDEIL 75
Query: 71 AVNNVNVEGATHKQVVELIKSGG 93
           +N    +   H + +ELIK+GG
Sbjct: 76 EINGETTKNMKHSRAIELIKNGG 98

>pdb|2Z17|A Chain A, Crystal Sturcture Of Pdz Domain From Human Pleckstrin Homology, Sec7 Length = 104

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 32/44 (72%)
Query: 58  AEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
           A  AG++ GD +  +N V+ EG T+KQVV+LI+S G++L++  +
Sbjct: 61  AHCAGLQAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIETL 104

>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Inad- Like Protein Length = 111

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 23/107 (21%)
Query: 3   STQQTGPR--------EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLA 54
           S+  +GP         EV++    +G GF + G  + G  +R+I              + 
Sbjct: 2   SSGSSGPETVCWGHVEEVELINDGSGLGFGIVGGKTSGVVVRTI--------------VP 47
Query: 55  GGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           GG A++ G ++ GD IL +   NV+G T +QV +++++ G+ + + V
Sbjct: 48  GGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLV 94

>pdb|2DJT|A Chain A, Solution Structures Of The Pdz Domain Of Human Unnamed Protein Product Length = 104

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 11/90 (12%)
Query: 12  VQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRIL 70
           V++ +   GFG  + G        R + G+   PL  V  +L  G A++ G +  GD +L
Sbjct: 15  VELVRGYAGFGLTLGGG-------RDVAGD--TPLA-VRGLLKDGPAQRCGRLEVGDLVL 64
Query: 71  AVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
            +N  + +G TH Q VE I++GG  L L +
Sbjct: 65  HINGESTQGLTHAQAVERIRAGGPQLHLVI 94

>pdb|1WI2|A Chain A, Solution Structure Of The Pdz Domain From Riken Cdna 2700099c19 Length = 104

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 13/88 (14%)
Query: 9  PREVQIAKSDTG-FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGD 67
          PR V + K      GFN+RG   +  QL             +S V+    A +AG+++GD
Sbjct: 16 PRIVTLKKPPGAQLGFNIRG--GKASQLGIF----------ISKVIPDSDAHRAGLQEGD 63
Query: 68 RILAVNNVNVEGATHKQVVELIKSGGDV 95
          ++LAVN+V+ +   H + VE++K+  ++
Sbjct: 64 QVLAVNDVDFQDIEHSKAVEILKTAREI 91

>pdb|3K1R|A Chain A, Structure Of Harmonin Npdz1 In Complex With The Sam-Pbm Of Sans Length = 192

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 17/106 (16%)
Query: 20  GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEG 79
           G G +VRG +  G  L             +S ++ GG A+  G++ GD I+ +N  ++  
Sbjct: 97  GLGLSVRGGLEFGCGL------------FISHLIKGGQADSVGLQVGDEIVRINGYSISS 144
Query: 80  ATHKQVVELIKSGGDV-LSLTVISVSPEEAERLEPPDDHSGYQQID 124
            TH++V+ LI++   V + +  I + P ++     PD+   +Q +D
Sbjct: 145 CTHEEVINLIRTEKTVSIKVRHIGLIPVKSS----PDEPLTWQYVD 186

>pdb|3PS4|A Chain A, Pdz Domain From Human Microtubule-Associated SerineTHREONINE-Protein Kinase 1 Length = 102

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 12 VQIAKSDTGFGFNVRGQVSEGGQLRSINGE--LYAPLQHVSAVLAGGAAEKAGIRKGDRI 69
          + I +S   +GF +R        +R   G+  +Y+    V  V  GG A++AG+  GD I
Sbjct: 9  ITIQRSGKKYGFTLRA-------IRVYMGDTDVYSVHHIVWHVEEGGPAQEAGLCAGDLI 61
Query: 70 LAVNNVNVEGATHKQVVELIKSGGDVLSLT 99
            VN   V G  H +VVELI   G+ +++T
Sbjct: 62 THVNGEPVHGMVHPEVVELILKSGNKVAVT 91

>pdb|2IWO|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp Target) Length = 120

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 5   QQTGPREVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGI 63
           Q  G R V++ K  T   G ++ G V  G  L  +   ++  + H + V    AA+   +
Sbjct: 21  QSMGLRTVEMKKGPTDSLGISIAGGV--GSPLGDV--PIFIAMMHPTGV----AAQTQKL 72
Query: 64  RKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVIS 102
           R GDRI+ +   + EG TH Q V L+K+    + + V++
Sbjct: 73  RVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVA 111

>pdb|1WFV|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Human Membrane Associated Guanylate Kinase Inverted-2 (Kiaa0705 Protein) Length = 103

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 13/83 (15%)
Query: 12 VQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRIL 70
          V + K   GFGF++RG            G  Y    +V  +   G A + G +R GD+I+
Sbjct: 15 VDMEKGAKGFGFSIRG------------GREYKMDLYVLRLAEDGPAIRNGRMRVGDQII 62
Query: 71 AVNNVNVEGATHKQVVELIKSGG 93
           +N  +    TH + +ELIKSGG
Sbjct: 63 EINGESTRDMTHARAIELIKSGG 85

>pdb|2I04|A Chain A, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C- Terminal Peptide Of Hpv18 E6 Length = 85

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 39/79 (49%), Gaps = 11/79 (13%)
Query: 13 QIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAV 72
          ++ KS  GFGF V G             E    LQ  S VL G AA    +  GD I++V
Sbjct: 5  KLRKSSRGFGFTVVG-----------GDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSV 53
Query: 73 NNVNVEGATHKQVVELIKS 91
          N+  V G TH QVV++ +S
Sbjct: 54 NDTCVLGHTHAQVVKIFQS 72

>pdb|2W4F|A Chain A, Crystal Structure Of The First Pdz Domain Of Human Scrib1 Length = 97

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 56  GAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           G A +AG+R GD++L VN V ++GA H + VE ++  G  + + V
Sbjct: 45  GPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRV 89

>pdb|1X5Q|A Chain A, Solution Structure Of The First Pdz Domain Of Scribble Homolog Protein (Hscrib) Length = 110

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 56  GAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           G A +AG+R GD++L VN V ++GA H + VE ++  G  + + V
Sbjct: 57  GPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRV 101

>pdb|1UEW|A Chain A, Solution Structure Of The Forth Pdz Domain Of Human Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein) Length = 114

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 10/105 (9%)
Query: 16  KSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEK-AGIRKGDRILAVNN 74
           K + GFGF +   ++     R  +G        +  ++ G  A++ A ++ GDRILAVN 
Sbjct: 19  KENEGFGFVIISSLN-----RPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNG 73
Query: 75  VNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSG 119
            ++    H  +V+LIK  G  ++L +I   P+E E   P    SG
Sbjct: 74  QSIINMPHADIVKLIKDAGLSVTLRII---PQE-ELNSPSGPSSG 114

>pdb|2KPK|A Chain A, Magi-1 Pdz1 Length = 129

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 39/79 (49%), Gaps = 11/79 (13%)
Query: 13 QIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAV 72
          ++ KS  GFGF V G             E    LQ  S VL G AA    +  GD I++V
Sbjct: 23 KLRKSSRGFGFTVVG-----------GDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSV 71
Query: 73 NNVNVEGATHKQVVELIKS 91
          N+  V G TH QVV++ +S
Sbjct: 72 NDTCVLGHTHAQVVKIFQS 90

>pdb|2FCF|A Chain A, The Crystal Structure Of The 7th Pdz Domain Of Mpdz (Mupp-1) Length = 103

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
Query: 5   QQTGPREVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG- 62
           Q   PR V++ +  +   G ++ G    G +L   NGE+   +  +  VL    A K G 
Sbjct: 1   QSMQPRRVELWREPSKSLGISIVGGRGMGSRLS--NGEVMRGI-FIKHVLEDSPAGKNGT 57
Query: 63  IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISV 103
           ++ GDRI+ V+ +++  A+H+Q VE I+  G+ +   V S+
Sbjct: 58  LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSI 98

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	373
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	2e-43
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	2e-35
2d90_A	102	PDZ domain containing protein 1; structural genomi	2e-35
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	5e-35
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	6e-35
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	8e-35
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	2e-34
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	3e-34
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	3e-34
3khf_A	99	Microtubule-associated serine/threonine-protein ki	1e-33
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	1e-33
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	4e-33
2ego_A	96	General receptor for phosphoinositides 1- associat	7e-33
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	3e-32
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	6e-32
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	6e-32
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	8e-32
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	9e-31
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	2e-30
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	2e-30
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	4e-30
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	1e-29
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	7e-29
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	1e-28
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	8e-28
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	1e-27
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	2e-27
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	1e-26
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	1e-26
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	2e-26
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	2e-26
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	6e-26
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	7e-26
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	3e-25
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	3e-25
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	4e-25
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	5e-25
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	5e-25
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	8e-25
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	1e-24
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	3e-24
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	3e-24
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	7e-24
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	8e-24
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	1e-23
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	3e-23
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	3e-23
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	4e-23
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	9e-23
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	1e-22
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	1e-22
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	1e-22
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	3e-22
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	4e-22
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	5e-22
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	7e-22
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	2e-21
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	3e-21
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	3e-21
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	5e-21
2opg_A	98	Multiple PDZ domain protein; structural protein, s	5e-21
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	5e-21
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	6e-21
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	7e-21
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	7e-21
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	8e-21
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	8e-21
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	8e-21
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	9e-18
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	1e-20
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	1e-20
2fne_A	117	Multiple PDZ domain protein; structural protein, s	1e-20
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	1e-20
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	2e-20
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	2e-20
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	2e-20
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	2e-20
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	7e-20
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	2e-20
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	3e-20
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	3e-20
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	3e-20
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	3e-20
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	3e-20
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	3e-20
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	5e-20
2awx_A	105	Synapse associated protein 97; membrane protein, s	6e-20
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	6e-20
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	6e-20
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	7e-20
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	7e-20
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	8e-20
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	9e-20
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	1e-19
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	1e-19
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	1e-19
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	1e-19
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	2e-19
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	2e-19
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	2e-19
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	2e-19
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	3e-19
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	3e-19
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	3e-19
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	4e-19
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	5e-19
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	6e-19
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	6e-19
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	6e-19
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	7e-19
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	8e-19
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	9e-19
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	1e-18
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	1e-18
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	9e-17
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	1e-18
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	1e-18
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	1e-18
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	2e-18
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	2e-18
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	2e-18
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	2e-18
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	2e-18
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	3e-18
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	3e-18
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	4e-18
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	4e-18
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	4e-18
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	5e-18
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	5e-18
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	7e-18
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	1e-17
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	1e-17
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	1e-17
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	2e-17
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	1e-14
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	3e-17
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	6e-17
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	1e-16
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	3e-16
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	3e-16
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	4e-16
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	6e-16
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	7e-16
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	8e-16
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	1e-15
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	1e-15
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	2e-15
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	2e-15
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	3e-15
3lui_A	115	Sorting nexin-17, SNX17; PX domain, endosome, phos	3e-15
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	4e-15
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	5e-15
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	7e-15
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	8e-15
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	9e-15
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	2e-06
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	9e-15
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	1e-10
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	5e-14
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	4e-11
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	3e-12
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	4e-12
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	9e-12
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	3e-11
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	9e-11
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	3e-09
2ett_A	128	Sorting nexin-22; PX domain, BC019655, SNX22_human	4e-09
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	5e-09
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	2e-08
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	4e-08
2v14_A	134	Kinesin-like motor protein C20ORF23; plus-END kine	5e-08
1xte_A	154	Serine/threonine-protein kinase SGK3; CISK, PX dom	5e-08
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	1e-07
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	3e-07
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	4e-07
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	7e-07
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	3e-05
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	8e-07
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	3e-05
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	1e-06
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	3e-05
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	3e-06
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	5e-06
2kl1_A	94	YLBL protein; structure genomics, structural genom	6e-06
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	9e-06
3k50_A	403	Putative S41 protease; structural genomics, joint	1e-05
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	2e-05
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	2e-05
4fgm_A	597	Aminopeptidase N family protein; structural genomi	3e-05
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	4e-05
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	5e-05
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	6e-05
3p0c_A	130	Nischarin; structural genomics, structural genomic	2e-04
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	3e-04
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	3e-04
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	4e-04
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	8e-04

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A* Length = 109

 Score =  124 bits (313), Expect = 2e-35
 Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 1/98 (1%)

Query: 9   PREVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGD 67
            + V + K D+ GFGF +RG  ++           +  LQ++ +V  GG A +AG+R GD
Sbjct: 8   EKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGD 67

Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSP 105
            ++ VN  NV    H+QVV +I+ GG+ L + V+ V+ 
Sbjct: 68  FLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR 105

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 102

 Score =  124 bits (313), Expect = 2e-35
 Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 13/111 (11%)

Query: 4   TQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGI 63
           +  +  R V I K   G+GF +R    + GQ+             +  +  G  AE AG+
Sbjct: 2   SSGSSGRVVVIKKGSNGYGFYLRAGPEQKGQI-------------IKDIEPGSPAEAAGL 48

Query: 64  RKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPP 114
           +  D ++AVN  +VE   H  VVE+I+ GGD  +L V+    E    L  P
Sbjct: 49  KNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKEAESIYSLSGP 99

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens} Length = 96

 Score =  123 bits (310), Expect = 5e-35
 Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 10/103 (9%)

Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
           PR + + K   GFGF +R +    G+          P Q +  V  G  A+KAG++ GDR
Sbjct: 4   PRCLHLEKGPQGFGFLLREEKGLDGR----------PGQFLWEVDPGLPAKKAGMQAGDR 53

Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERL 111
           ++AV   +VEG  H++ V  I+  G  +SLTV+    +    +
Sbjct: 54  LVAVAGESVEGLGHEETVSRIQGQGSCVSLTVVDPEADRETSV 96

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 106

 Score =  123 bits (310), Expect = 6e-35
 Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 13/111 (11%)

Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
           PR   + K    +GF+++    + G              +++ +   G A +AG+   D 
Sbjct: 9   PRLCYLVKEGGSYGFSLKTVQGKKGV-------------YMTDITPQGVAMRAGVLADDH 55

Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSG 119
           ++ VN  NVE A+H++VVE +K  G  +   ++    ++    +     SG
Sbjct: 56  LIEVNGENVEDASHEEVVEKVKKSGSRVMFLLVDKETDKRHVEQKSGPSSG 106

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens} Length = 98

 Score =  122 bits (308), Expect = 8e-35
 Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 13/101 (12%)

Query: 7   TGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKG 66
             PR   + K  +G+GFN+    S+ GQ              + +V     AE +G+R  
Sbjct: 8   LRPRLCTMKKGPSGYGFNLHSDKSKPGQF-------------IRSVDPDSPAEASGLRAQ 54

Query: 67  DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEE 107
           DRI+ VN V +EG  H  VV  I++GGD   L V+    +E
Sbjct: 55  DRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETDE 95

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus} Length = 132

 Score =  123 bits (309), Expect = 2e-34
 Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 1/104 (0%)

Query: 3   STQQTGPREVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA 61
           S      + V + K D+ GFGF +RG  ++           +  LQ++ +V  GG A +A
Sbjct: 22  SDYIIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRA 81

Query: 62  GIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSP 105
           G+R GD ++ VN  NV    H+QVV +I+ GG+ L + V+ V+ 
Sbjct: 82  GLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR 125

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} PDB: 3r69_A* Length = 95

 Score =  121 bits (305), Expect = 3e-34
 Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 13/102 (12%)

Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
           PR V I K   G+GF +R    + GQ+             +  +  G  AE AG++  D 
Sbjct: 6   PRVVVIKKGSNGYGFYLRAGPEQKGQI-------------IKDIEPGSPAEAAGLKNNDL 52

Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAER 110
           ++AVN  +VE   H  VVE+I+ GGD  +L V+    E   R
Sbjct: 53  VVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKELERPHR 94

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A Length = 91

 Score =  120 bits (304), Expect = 3e-34
 Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 15/106 (14%)

Query: 6   QTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRK 65
           +  PR   + K   G+GF++ G+  + GQ             ++  V  G  AEKAG+  
Sbjct: 1   RMLPRLCCLEKGPNGYGFHLHGEKGKLGQ-------------YIRLVEPGSPAEKAGLLA 47

Query: 66  GDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERL 111
           GDR++ VN  NVE  TH+QVV  I++  + + L V  V PE  E+L
Sbjct: 48  GDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLV--VDPETDEQL 91

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A Length = 99

 Score =  119 bits (301), Expect = 1e-33
 Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 5/98 (5%)

Query: 10  REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRI 69
             + I  S   +GF++R      G     + ++Y     V +V  G  A++AG+R GD I
Sbjct: 4   PPIVIHSSGKKYGFSLRAIRVYMG-----DSDVYTVHHVVWSVEDGSPAQEAGLRAGDLI 58

Query: 70  LAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEE 107
             +N  +V G  H  VVEL+   G+ +SL   ++   E
Sbjct: 59  THINGESVLGLVHMDVVELLLKSGNKISLRTTALENTE 96

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A Length = 90

 Score =  118 bits (299), Expect = 1e-33
 Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 13/98 (13%)

Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
           PR   + K   G+GFN+    S              P Q++ +V  G  A ++G+R  DR
Sbjct: 5   PRLCHLRKGPQGYGFNLHSDKSR-------------PGQYIRSVDPGSPAARSGLRAQDR 51

Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPE 106
           ++ VN  NVEG  H +VV  IK+  D   L V+  S  
Sbjct: 52  LIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPSTR 89

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A Length = 91

 Score =  117 bits (296), Expect = 4e-33
 Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 13/100 (13%)

Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
           P+  ++AK + G+GF++       G               +  V  GG A+ AG+   D 
Sbjct: 4   PKLCRLAKGENGYGFHLNAIRGLPGS-------------FIKEVQKGGPADLAGLEDEDV 50

Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEA 108
           I+ VN VNV    +++VV+ I+S G  ++L V     ++ 
Sbjct: 51  IIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCGKKAQDT 90

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A Length = 96

 Score =  117 bits (295), Expect = 7e-33
 Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 6/97 (6%)

Query: 9   PREVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGD 67
            + + + K D   FGF ++              +    +  V+ V     A+ AG+  GD
Sbjct: 5   RKVLTLEKGDNQTFGFEIQTYGLHHR-----EEQRVEMVTFVARVHESSPAQLAGLTPGD 59

Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVS 104
            I +VN +NVEG  H+++V++IK+ G+VL L  +  +
Sbjct: 60  TIASVNGLNVEGIRHREIVDIIKASGNVLRLETLYGT 96

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens} Length = 128

 Score =  116 bits (293), Expect = 3e-32
 Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 16/113 (14%)

Query: 8   GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGD 67
            PR   + K  +G+GFN+    S+ GQ              + +V     AE +G+R  D
Sbjct: 9   RPRLCTMKKGPSGYGFNLHSDKSKPGQF-------------IRSVDPDSPAEASGLRAQD 55

Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEA---ERLEPPDDH 117
           RI+ VN V +EG  H  VV  I++GGD   L V+    +E     R+ P  +H
Sbjct: 56  RIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETDEFFKKCRVIPSQEH 108

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} Length = 106

 Score =  115 bits (289), Expect = 6e-32
 Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 14/109 (12%)

Query: 8   GPREVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKG 66
           GPRE +++K +   +GF +R +    G L             +  +  G  AEKAG+  G
Sbjct: 1   GPRESKLSKQEGQNYGFFLRIEKDTDGHL-------------IRVIEEGSPAEKAGLLDG 47

Query: 67  DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPD 115
           DR+L +N V V+   H QVVEL++  G+ ++L V+     E       D
Sbjct: 48  DRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDGDSYEKAVKNQVD 96

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score =  116 bits (291), Expect = 6e-32
 Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 16/122 (13%)

Query: 3   STQQTGPREVQIAKSDTGFGFNVRG--------------QVSEGGQLRSINGELYAPL-- 46
           S    GP+ V + ++  GFGF +R               +  E G           P+  
Sbjct: 3   SGSSGGPKTVTLKRTSQGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDT 62

Query: 47  QHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPE 106
             V  V  GG A +AG+  GDRI+ VN  +V G T+ QV+ LI++    L L+V+     
Sbjct: 63  IFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVMPKDSG 122

Query: 107 EA 108
            +
Sbjct: 123 PS 124

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens} Length = 104

 Score =  114 bits (288), Expect = 8e-32
 Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 6/96 (6%)

Query: 7   TGPREVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRK 65
           +  + V + K D   FGF ++    +       N         +  +     A  AG++ 
Sbjct: 14  SQRKLVTVEKQDNETFGFEIQSYRPQNQ-----NACSSEMFTLICKIQEDSPAHCAGLQA 68

Query: 66  GDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
           GD +  +N V+ EG T+KQVV+LI+S G++L++  +
Sbjct: 69  GDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIETL 104

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A Length = 93

 Score =  111 bits (280), Expect = 9e-31
 Identities = 38/100 (38%), Positives = 52/100 (52%), Gaps = 17/100 (17%)

Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
            R V I K   GFGF V G                  +  V +V  GGAA KAG+++GDR
Sbjct: 9   QRCVIIQKDQHGFGFTVSGD----------------RIVLVQSVRPGGAAMKAGVKEGDR 52

Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEA 108
           I+ VN   V  ++H +VV+LIKSG  V +LT++  S   +
Sbjct: 53  IIKVNGTMVTNSSHLEVVKLIKSGAYV-ALTLLGSSSGPS 91

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens} Length = 83

 Score =  110 bits (278), Expect = 2e-30
 Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 16/94 (17%)

Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
            R V++A+   G+GF + GQ               AP   +S V+ G  A+  G+R GD+
Sbjct: 3   VRSVEVARGRAGYGFTLSGQ---------------AP-CVLSCVMRGSPADFVGLRAGDQ 46

Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVIS 102
           ILAVN +NV+ A+H+ VV+LI     VL + +  
Sbjct: 47  ILAVNEINVKKASHEDVVKLIGKCSGVLHMVIAE 80

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 216

 Score =  114 bits (286), Expect = 2e-30
 Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 16/115 (13%)

Query: 8   GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGD 67
            PR   + K  +G+GFN+    S+ GQ              + +V     AE +G+R  D
Sbjct: 9   RPRLCTMKKGPSGYGFNLHSDKSKPGQF-------------IRSVDPDSPAEASGLRAQD 55

Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEA---ERLEPPDDHSG 119
           RI+ VN V +EG  H  VV  I++GGD   L V+    +E     R+ P  +H  
Sbjct: 56  RIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETDEFFKKCRVIPSQEHLN 110

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus} Length = 114

 Score =  110 bits (277), Expect = 4e-30
 Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 14/113 (12%)

Query: 4   TQQTGPREVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG 62
                PRE +++K +   +GF +R +    G L             +  +  G  AEKAG
Sbjct: 9   ASTFNPRECKLSKQEGQNYGFFLRIEKDTDGHL-------------IRVIEEGSPAEKAG 55

Query: 63  IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPD 115
           +  GDR+L +N V V+   H QVVEL++  G+ ++L V+     E       D
Sbjct: 56  LLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDGDSYEKAVKNQVD 108

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1 Length = 91

 Score =  108 bits (272), Expect = 1e-29
 Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 16/98 (16%)

Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
            R++ I +   GFGF +                  +P++ V AV +GG AE+AG+++ D 
Sbjct: 4   YRQITIPRGKDGFGFTICCD---------------SPVR-VQAVDSGGPAERAGLQQLDT 47

Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPE 106
           +L +N   VE     ++   I+S    + L V  + P+
Sbjct: 48  VLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRMVPQ 85

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1 Length = 111

 Score =  107 bits (269), Expect = 7e-29
 Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 17/118 (14%)

Query: 3   STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG 62
           S + + PR +     +   GF +RG                 P+Q V  +    +A  AG
Sbjct: 10  SKRWSPPRGIHFTVEEGDLGFTLRGN---------------TPVQ-VHFLDPHCSASLAG 53

Query: 63  IRKGDRILAVNNVNVEGATHKQVVELIKS-GGDVLSLTVISVSPEEAERLEPPDDHSG 119
            ++GD I+++  V+ +  T  +V++L+KS GG+ + + V+S+    +         SG
Sbjct: 54  AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVSLLDSTSSMHNKSGPSSG 111

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 113

 Score =  106 bits (267), Expect = 1e-28
 Identities = 41/118 (34%), Positives = 57/118 (48%), Gaps = 15/118 (12%)

Query: 3   STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG 62
                 PR++ + K  TG GFN+ G     G               VS +LAGG A+ +G
Sbjct: 10  GGDAREPRKIILHKGSTGLGFNIVGGEDGEGIF-------------VSFILAGGPADLSG 56

Query: 63  -IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSG 119
            +R+GDRIL+VN VN+  ATH+Q    +K  G  +++      PEE  R E     SG
Sbjct: 57  ELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVA-QYRPEEYSRFESSGPSSG 113

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens} Length = 109

 Score =  104 bits (261), Expect = 8e-28
 Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 17/104 (16%)

Query: 6   QTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRK 65
           Q+ PR ++    +   GF +RG                AP+Q V  +    +A  AG R+
Sbjct: 21  QSMPRSIRFTAEEGDLGFTLRGN---------------APVQ-VHFLDPYCSASVAGARE 64

Query: 66  GDRILAVNNVNVEGATHKQVVELIKS-GGDVLSLTVISVSPEEA 108
           GD I+++  V+ +  T  +V++L+KS G D + + V+S+  E  
Sbjct: 65  GDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVVSLLDEVT 108

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score =  104 bits (261), Expect = 1e-27
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 6/92 (6%)

Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
              + I +   G G ++ G            G ++     +S V   G A +AG+R GD+
Sbjct: 16  ELTLTILRQTGGLGISIAGGKGSTPYKGDDEG-IF-----ISRVSEEGPAARAGVRVGDK 69

Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           +L VN V ++GA H + VE ++  G  + + V
Sbjct: 70  LLEVNGVALQGAEHHEAVEALRGAGTAVQMRV 101

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1 Length = 100

 Score =  102 bits (257), Expect = 2e-27
 Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 16/106 (15%)

Query: 3   STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG 62
             +     ++ I +   GFGF +                  +P   V AV +GG AE+AG
Sbjct: 10  DPENGEKLQITIRRGKDGFGFTICCD---------------SP-VRVQAVDSGGPAERAG 53

Query: 63  IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEA 108
           +++ D +L +N   VE     ++   I+S    + L V  VS   +
Sbjct: 54  LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRVSGPSS 99

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A Length = 104

 Score =  101 bits (253), Expect = 1e-26
 Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 15/105 (14%)

Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
           PR + I +  TG GFN+ G            GE    +  +S +LAGG A+ +G +RKGD
Sbjct: 12  PRRIVIHRGSTGLGFNIVG------------GEXGEGI-FISFILAGGPADLSGELRKGD 58

Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLE 112
           +IL+VN V++  A+H+Q    +K+ G  +++      PEE  R E
Sbjct: 59  QILSVNGVDLRNASHEQAAIALKNAGQTVTIIA-QYKPEEYSRFE 102

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens} Length = 97

 Score =  100 bits (252), Expect = 1e-26
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 6/92 (6%)

Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
              + I +   G G ++ G            G ++     +S V   G A +AG+R GD+
Sbjct: 4   ELTLTILRQTGGLGISIAGGKGSTPYKGDDEG-IF-----ISRVSEEGPAARAGVRVGDK 57

Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           +L VN V ++GA H + VE ++  G  + + V
Sbjct: 58  LLEVNGVALQGAEHHEAVEALRGAGTAVQMRV 89

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A Length = 139

 Score =  102 bits (254), Expect = 2e-26
 Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 5/110 (4%)

Query: 6   QTGPREVQIAKSDTG----FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA 61
           Q+  + V+I K   G     GF++ G + +       + +      +V+ V  GG AE A
Sbjct: 21  QSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIA 80

Query: 62  GIRKGDRILAVNNVNVEGATHKQVVELIK-SGGDVLSLTVISVSPEEAER 110
           G++ GD+I+ VN  ++   TH Q  + +     +V+ L V   S ++A +
Sbjct: 81  GLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQKAVQ 130

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A Length = 119

 Score =  100 bits (252), Expect = 2e-26
 Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 17/119 (14%)

Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
           PR + I +  TG GFN+ G     G               +S +LAGG A+ +G +RKGD
Sbjct: 15  PRRIVIHRGSTGLGFNIVGGEDGEGIF-------------ISFILAGGPADLSGELRKGD 61

Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLE--PPDDHSGYQQID 124
           +IL+VN V++  A+H+Q    +K+ G  +++      PEE  R E     D SG    D
Sbjct: 62  QILSVNGVDLRNASHEQAAIALKNAGQTVTIIA-QYKPEEYSRFEANSRVDSSGRIVTD 119

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 114

 Score = 99.4 bits (248), Expect = 6e-26
 Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 9/114 (7%)

Query: 3   STQQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA 61
           S+      +V I + +  GFGF +          R  +G        +  ++ G  A++ 
Sbjct: 5   SSGSLQTSDVVIHRKENEGFGFVIIS-----SLNRPESGSTITVPHKIGRIIDGSPADRC 59

Query: 62  G-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPP 114
             ++ GDRILAVN  ++    H  +V+LIK  G  ++L +  +  EE      P
Sbjct: 60  AKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRI--IPQEELNSPSGP 111

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 117

 Score = 99.5 bits (248), Expect = 7e-26
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 5/105 (4%)

Query: 3   STQQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA 61
            +    PR V+I +      G ++ G  +   +L+  NGE    +  +  VL    A K 
Sbjct: 10  FSHWGPPRIVEIFREPNVSLGISIVGGQTVIKRLK--NGEELKGI-FIKQVLEDSPAGKT 66

Query: 62  G-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSP 105
             ++ GD+IL V+ V+++ A+H + VE IK+ G+ +   V S+S 
Sbjct: 67  NALKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQSLSS 111

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A Length = 114

 Score = 97.6 bits (243), Expect = 3e-25
 Identities = 25/118 (21%), Positives = 51/118 (43%), Gaps = 14/118 (11%)

Query: 3   STQQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA 61
             ++   ++V I+     G G ++              G +  P   +S V  G  + + 
Sbjct: 10  GNRENKEKKVFISLVGSRGLGCSISS------------GPIQKPGIFISHVKPGSLSAEV 57

Query: 62  GIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSG 119
           G+  GD+I+ VN V+     HK+ V ++KS    L++++++ +  E    +     SG
Sbjct: 58  GLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRS-LTISIVAAAGRELFMTDRSGPSSG 114

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens} Length = 88

 Score = 96.6 bits (241), Expect = 3e-25
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 17/94 (18%)

Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
              V I K   GFGF +      GGQ              V  ++   +    G+++GD 
Sbjct: 4   LITVHIVKGPMGFGFTIADSPGGGGQ-------------RVKQIV--DSPRSRGLKEGDL 48

Query: 69  ILAVNNVNVEGATHKQVVELIKSG--GDVLSLTV 100
           I+ VN  NV+  TH QVV+++     G  ++L V
Sbjct: 49  IVEVNKKNVQALTHNQVVDMLVESPKGSEVTLLV 82

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 108

 Score = 97.0 bits (242), Expect = 4e-25
 Identities = 42/98 (42%), Positives = 60/98 (61%), Gaps = 7/98 (7%)

Query: 5   QQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSI-NGELYAPLQHVSAVLAGGAAEKAG- 62
           +     EV++AK+D   G +V     +GG   S+ +G +Y     V AV+  GAAE  G 
Sbjct: 6   KPGDIFEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIY-----VKAVIPQGAAESDGR 60

Query: 63  IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           I KGDR+LAVN V++EGATHKQ VE +++ G V+ L +
Sbjct: 61  IHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLL 98

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A Length = 128

 Score = 97.6 bits (243), Expect = 5e-25
 Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 6/101 (5%)

Query: 8   GPREVQIAK--SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IR 64
             R V++ K  ++   GF +R   S      + +G    P   +S ++ GG A+  G + 
Sbjct: 29  THRRVRLCKYGTEKPLGFYIRDGSSVRV---TPHGLEKVPGIFISRLVPGGLAQSTGLLA 85

Query: 65  KGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSP 105
             D +L VN + V G +  QV +++ +    L +TV   + 
Sbjct: 86  VNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQ 126

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 97.5 bits (243), Expect = 5e-25
 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 14/92 (15%)

Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
           PR V++ K     G ++     +GG               VS V  G  A +AG+  GD+
Sbjct: 20  PRHVKVQKGSEPLGISIVSG-EKGGIY-------------VSKVTVGSIAHQAGLEYGDQ 65

Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           +L  N +N+  AT +Q   +I    D +++  
Sbjct: 66  LLEFNGINLRSATEQQARLIIGQQCDTITILA 97

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 93

 Score = 95.8 bits (239), Expect = 8e-25
 Identities = 31/95 (32%), Positives = 54/95 (56%), Gaps = 13/95 (13%)

Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
              V++ K+D G GFN+ G   +   +            ++S V+ GG A++ G +++GD
Sbjct: 6   SGVVELPKTDEGLGFNIMGGKEQNSPI------------YISRVIPGGVADRHGGLKRGD 53

Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVIS 102
           ++L+VN V+VEG  H++ VEL+K+    + L V S
Sbjct: 54  QLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRS 88

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 91

 Score = 95.5 bits (238), Expect = 1e-24
 Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 15/94 (15%)

Query: 9   PREVQIAKSDT--GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKG 66
             +V + K      FGF             S+   L     +V  +   G  +  G++  
Sbjct: 7   LHKVTLYKDSGMEDFGF-------------SVADGLLEKGVYVKNIRPAGPGDLGGLKPY 53

Query: 67  DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           DR+L VN+V         VV LI   G+ L L +
Sbjct: 54  DRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVI 87

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A Length = 82

 Score = 93.9 bits (234), Expect = 3e-24
 Identities = 18/94 (19%), Positives = 40/94 (42%), Gaps = 20/94 (21%)

Query: 9   PREVQIAKSDTG-FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGD 67
           PR + + K  TG  GF  +                      +++++   +A + G+    
Sbjct: 5   PRTITMHKDSTGHVGFIFKNGK-------------------ITSIVKDSSAARNGLLTEH 45

Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
            I  +N  NV G    Q+ +++ + G V+++T++
Sbjct: 46  NICEINGQNVIGLKDSQIADILSTSGTVVTITIM 79

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A Length = 96

 Score = 94.2 bits (235), Expect = 3e-24
 Identities = 42/111 (37%), Positives = 61/111 (54%), Gaps = 18/111 (16%)

Query: 5   QQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-I 63
           +     EV++AK+D   G +V G V+   +   I         +V AV+  GAAE  G I
Sbjct: 2   KPGDIFEVELAKNDNSLGISVTGGVNTSVRHGGI---------YVKAVIPQGAAESDGRI 52

Query: 64  RKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPP 114
            KGDR+LAVN V++EGATHKQ VE +++ G V+ L +        E+ + P
Sbjct: 53  HKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLL--------EKGQSP 95

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 93.6 bits (233), Expect = 7e-24
 Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 14/104 (13%)

Query: 3   STQQTGPREVQIAKSDTG-FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA 61
           S+       V++ KS  G  GF+VRG    G  +             VS V  G +AE+A
Sbjct: 5   SSGSDIIHSVRVEKSPAGRLGFSVRGGSEHGLGI------------FVSKVEEGSSAERA 52

Query: 62  GIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSP 105
           G+  GD+I  VN +++E  T    V+++ S   +  + V  +  
Sbjct: 53  GLCVGDKITEVNGLSLESTTMGSAVKVLTSSSRL-HMMVRRMGS 95

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A Length = 192

 Score = 96.2 bits (239), Expect = 8e-24
 Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 16/125 (12%)

Query: 1   MYSTQQTGPREVQIAKS-DTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAE 59
           +   +    +EV++ +    G G +VRG +  G  L             +S ++ GG A+
Sbjct: 77  LTPRRSRKLKEVRLDRLHPEGLGLSVRGGLEFGCGL------------FISHLIKGGQAD 124

Query: 60  KAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSG 119
             G++ GD I+ +N  ++   TH++V+ LI++   V S+ V  +          PD+   
Sbjct: 125 SVGLQVGDEIVRINGYSISSCTHEEVINLIRTEKTV-SIKVRHIGL--IPVKSSPDEPLT 181

Query: 120 YQQID 124
           +Q +D
Sbjct: 182 WQYVD 186

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 92.8 bits (231), Expect = 1e-23
 Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 5/103 (4%)

Query: 5   QQTGPREVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG- 62
           Q   PR V++ +  +   G ++ G    G +L   NGE+   +  +  VL    A K G 
Sbjct: 1   QSMQPRRVELWREPSKSLGISIVGGRGMGSRLS--NGEVMRGI-FIKHVLEDSPAGKNGT 57

Query: 63  IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSP 105
           ++ GDRI+ V+ +++  A+H+Q VE I+  G+ +   V S+  
Sbjct: 58  LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIIS 100

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens} Length = 123

 Score = 92.5 bits (230), Expect = 3e-23
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 5/105 (4%)

Query: 3   STQQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA 61
             Q   PR V++ +      G ++ G    G   R  NGE+   +  +  VL    A K 
Sbjct: 19  YFQSMQPRRVELWREPSKSLGISIVG--GRGMGSRLSNGEVMRGI-FIKHVLEDSPAGKN 75

Query: 62  G-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSP 105
           G ++ GDRI+ V+ +++  A+H+Q VE I+  G+ +   V S+  
Sbjct: 76  GTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIIS 120

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 92.0 bits (229), Expect = 3e-23
 Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 11/110 (10%)

Query: 11  EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
            V++ +  +G G  +   +        +         ++  +L G  A   G +  GDRI
Sbjct: 11  TVELERGPSGLGMGLIDGMHTHLGAPGL---------YIQTLLPGSPAAADGRLSLGDRI 61

Query: 70  LAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSG 119
           L VN  ++ G  + + V+LI+ GG  +   V     E A+++      SG
Sbjct: 62  LEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDVETAKKIHSGPS-SG 110

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 105

 Score = 91.6 bits (228), Expect = 4e-23
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 15/118 (12%)

Query: 3   STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG 62
           S+  +G     +A+S+ G GF++ G     G+  +      A +  VS +  GGAA +AG
Sbjct: 2   SSGSSGRHVACLARSERGLGFSIAG-----GKGSTPYRAGDAGI-FVSRIAEGGAAHRAG 55

Query: 63  -IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSG 119
            ++ GDR+L++N V+V  A H   V L+ +    ++L +        ER       SG
Sbjct: 56  TLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLL--------EREAGSGPSSG 105

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 101

 Score = 90.5 bits (225), Expect = 9e-23
 Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 15/105 (14%)

Query: 3   STQQTGPREVQIAK--SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEK 60
           S      R V + +  +  G GF++RG    G  +            +VS V  G  AEK
Sbjct: 3   SGSSGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGI------------YVSLVEPGSLAEK 50

Query: 61  AGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSP 105
            G+R GD+IL VN+ ++   TH + V+ +K    +  L+V S   
Sbjct: 51  EGLRVGDQILRVNDKSLARVTHAEAVKALKGSKKL-VLSVYSAGR 94

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 90

 Score = 90.2 bits (224), Expect = 1e-22
 Identities = 17/107 (15%), Positives = 43/107 (40%), Gaps = 22/107 (20%)

Query: 1   MYSTQQTGPREVQIAK---SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGA 57
            +  +  G     + +        GF+V+  +                   + +++ GG 
Sbjct: 3   HHHLETMGNVTTVLIRRPDLRYQLGFSVQNGI-------------------ICSLMRGGI 43

Query: 58  AEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVS 104
           AE+ G+R G RI+ +N  +V    H+++V ++ +    + +  +  +
Sbjct: 44  AERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPAA 90

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} Length = 93

 Score = 90.1 bits (224), Expect = 1e-22
 Identities = 20/100 (20%), Positives = 46/100 (46%), Gaps = 14/100 (14%)

Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
            + +++ K+    G  ++     G  +             V+ ++ GGAA+++G I  GD
Sbjct: 5   VKIIRLVKNREPLGATIKKDEQTGAII-------------VARIMRGGAADRSGLIHVGD 51

Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEE 107
            +  VN + VE    +++++++      ++  +I  S EE
Sbjct: 52  ELREVNGIPVEDKRPEEIIQILAQSQGAITFKIIPGSKEE 91

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 90.4 bits (225), Expect = 1e-22
 Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 11/99 (11%)

Query: 3   STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG 62
           S Q +G   V++ +   GFG  + G     G+  + +  L      V  +L  G A++ G
Sbjct: 6   SGQASGHFSVELVRGYAGFGLTLGG-----GRDVAGDTPLA-----VRGLLKDGPAQRCG 55

Query: 63  -IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
            +  GD +L +N  + +G TH Q VE I++GG  L L +
Sbjct: 56  RLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVI 94

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 89.7 bits (223), Expect = 3e-22
 Identities = 23/110 (20%), Positives = 46/110 (41%), Gaps = 15/110 (13%)

Query: 11  EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
            V++ K + G G ++ G            G ++     V  V  GGAA++ G I+  D+I
Sbjct: 12  PVELEKDEDGLGISIIGMGVGADAGLEKLG-IF-----VKTVTEGGAAQRDGRIQVNDQI 65

Query: 70  LAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSG 119
           + V+ +++ G T      ++++    +   +         R +P    SG
Sbjct: 66  VEVDGISLVGVTQNFAATVLRNTKGNVRFVI--------GREKPSGPSSG 107

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 88.5 bits (220), Expect = 4e-22
 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 13/92 (14%)

Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
           P  V +    + +GF + G     G+      +  APL  +S V AG  A  A +  GD 
Sbjct: 9   PHSVTLRG-PSPWGFRLVG-----GR------DFSAPLT-ISRVHAGSKAALAALCPGDL 55

Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           I A+N  + E  TH +    IK   D L+L+V
Sbjct: 56  IQAINGESTELMTHLEAQNRIKGCHDHLTLSV 87

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 128

 Score = 89.5 bits (222), Expect = 5e-22
 Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 14/116 (12%)

Query: 1   MYSTQQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAE 59
           ++  Q    ++V +   D    G  +RG            G  Y    +++ V  G  AE
Sbjct: 13  LHLLQGGDEKKVNLVLGDGRSLGLTIRG------------GAEYGLGIYITGVDPGSEAE 60

Query: 60  KAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPD 115
            +G++ GD+IL VN  +     H + V L+KS   +  LTV  V      R    +
Sbjct: 61  GSGLKVGDQILEVNGRSFLNILHDEAVRLLKSSRHL-ILTVKDVGRLPHARTTVDE 115

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 88.7 bits (220), Expect = 7e-22
 Identities = 20/117 (17%), Positives = 46/117 (39%), Gaps = 14/117 (11%)

Query: 4   TQQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG 62
              +GP  V+I K+  +  G ++            I          +  +      +++G
Sbjct: 11  ANASGPLMVEIVKTPGSALGISLTTTSLRNKS--VI---------TIDRIKPASVVDRSG 59

Query: 63  -IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHS 118
            +  GD IL+++  ++E  +  +  +L+ S  + + L ++   P+    L P    S
Sbjct: 60  ALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEILP-VPQSQRPLRPSSGPS 115

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 104

 Score = 87.0 bits (216), Expect = 2e-21
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 14/96 (14%)

Query: 6   QTGPREVQIAK-SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIR 64
           Q  PR V + K      GFN+RG            G+       +S V+    A +AG++
Sbjct: 13  QFLPRIVTLKKPPGAQLGFNIRG------------GKASQLGIFISKVIPDSDAHRAGLQ 60

Query: 65  KGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           +GD++LAVN+V+ +   H + VE++K+  ++ S+ V
Sbjct: 61  EGDQVLAVNDVDFQDIEHSKAVEILKTAREI-SMRV 95

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 86.7 bits (215), Expect = 3e-21
 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 12/100 (12%)

Query: 20  GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEG 79
            +GF ++G     G+      +   PL  +S++  GG A +A +R GD +L+++ ++ +G
Sbjct: 16  PWGFRLQG-----GK------DFNMPLT-ISSLKDGGKASQAHVRIGDVVLSIDGISAQG 63

Query: 80  ATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSG 119
            TH +    IK+    L++T+   S             SG
Sbjct: 64  MTHLEAQNKIKACTGSLNMTLQRASAAAKSEPVSSGPSSG 103

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 86.7 bits (215), Expect = 3e-21
 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 7/94 (7%)

Query: 9   PREVQIAKSDTGFGFNVRG-QVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKG 66
              + + +     GFN+ G + S      S +  ++     VS ++  G A K G ++  
Sbjct: 9   SLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIF-----VSKIVDSGPAAKEGGLQIH 63

Query: 67  DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           DRI+ VN  ++  ATH Q VE  K+  + + + V
Sbjct: 64  DRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQV 97

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens} Length = 103

 Score = 85.9 bits (213), Expect = 5e-21
 Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 15/112 (13%)

Query: 1   MYSTQQTGP-REVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAA 58
           M  +Q  GP R+V + K D  G G ++ G    G  +             +S +  G  A
Sbjct: 1   MKKSQGVGPIRKVLLLKEDHEGLGISITGGKEHGVPIL------------ISEIHPGQPA 48

Query: 59  EKAG-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAE 109
           ++ G +  GD ILAVN VN+    HK+ V ++      +   V+ V+ E   
Sbjct: 49  DRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVYVALEHHH 100

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens} Length = 98

 Score = 85.8 bits (213), Expect = 5e-21
 Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 13/105 (12%)

Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
              ++I+K  TG G ++ G         ++ G +      +  V   GAA K G +  GD
Sbjct: 5   ETTIEISKGRTGLGLSIVGGSD------TLLGAII-----IHEVYEEGAACKDGRLWAGD 53

Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI-SVSPEEAERL 111
           +IL VN +++  ATH + + +++     + LT+    +P ++ RL
Sbjct: 54  QILEVNGIDLRKATHDEAINVLRQTPQRVRLTLYRDEAPYKSTRL 98

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 85.8 bits (213), Expect = 5e-21
 Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 13/99 (13%)

Query: 3   STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG 62
           S Q      V + K   GFGF++RG       L            +V  +   G A + G
Sbjct: 6   SGQDFDYFTVDMEKGAKGFGFSIRGGREYKMDL------------YVLRLAEDGPAIRNG 53

Query: 63  -IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
            +R GD+I+ +N  +    TH + +ELIKSGG  + L +
Sbjct: 54  RMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLL 92

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens} Length = 112

 Score = 85.9 bits (213), Expect = 6e-21
 Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 13/99 (13%)

Query: 3   STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG 62
             Q      V++ +   GFGF++RG       L            +V  +   G AE++G
Sbjct: 19  YFQSMDFYTVELERGAKGFGFSLRGGREYNMDL------------YVLRLAEDGPAERSG 66

Query: 63  -IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
            +R GD IL +N    +   H + +ELIK+GG  + L +
Sbjct: 67  KMRIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLFL 105

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A Length = 85

 Score = 85.0 bits (211), Expect = 7e-21
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 13/92 (14%)

Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
              V +      +GF ++G             +   PL  +S +  G  A ++ + +GD 
Sbjct: 2   AYSVTLTG-PGPWGFRLQGGK-----------DFNMPLT-ISRITPGSKAAQSQLSQGDL 48

Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           ++A++ VN +  TH +    IKS    LSLT+
Sbjct: 49  VVAIDGVNTDTMTHLEAQNKIKSASYNLSLTL 80

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 86.0 bits (213), Expect = 7e-21
 Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 8/107 (7%)

Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
             E+ + +  +G GFN+ G      Q  S +  +Y     VS +   GAA   G +++GD
Sbjct: 18  EEEINLTRGPSGLGFNIVGGT--DQQYVSNDSGIY-----VSRIKENGAAALDGRLQEGD 70

Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPP 114
           +IL+VN  +++   H+  V+L ++ G  +SL V      +   +  P
Sbjct: 71  KILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQVQNGPISGP 117

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A Length = 101

 Score = 85.5 bits (212), Expect = 8e-21
 Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 8/93 (8%)

Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
             E+ + +  +G GFN+ G      Q  S +  +Y     VS +   GAA   G +++GD
Sbjct: 8   EEEINLTRGPSGLGFNIVGGT--DQQYVSNDSGIY-----VSRIKENGAAALDGRLQEGD 60

Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           +IL+VN  +++   H+  V+L ++ G  +SL V
Sbjct: 61  KILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRV 93

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A Length = 97

 Score = 85.1 bits (211), Expect = 8e-21
 Identities = 21/99 (21%), Positives = 44/99 (44%), Gaps = 13/99 (13%)

Query: 4   TQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG- 62
           +       V++ +     G  + G       +             +S++  GG AE+ G 
Sbjct: 1   SSGAIIYTVELKRYGGPLGITISGTEEPFDPII------------ISSLTKGGLAERTGA 48

Query: 63  IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
           I  GDRILA+N+ +++G    + + L++  G+ ++L + 
Sbjct: 49  IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIK 87

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 88.3 bits (219), Expect = 8e-21
 Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 8/93 (8%)

Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
             E+ + + ++G GF++ G           +  ++     ++ ++ GGAA + G +R  D
Sbjct: 6   YEEITLERGNSGLGFSIAGGT--DNPHIGDDPSIF-----ITKIIPGGAAAQDGRLRVND 58

Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
            IL VN V+V   TH   VE +K  G ++ L V
Sbjct: 59  SILFVNEVDVREVTHSAAVEALKEAGSIVRLYV 91

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 79.8 bits (197), Expect = 9e-18
 Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 8/100 (8%)

Query: 2   YSTQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA 61
                    E+++ K   G GF++ G    G Q    +  +Y     V+ ++ GGAA K 
Sbjct: 94  RKPPAEKVMEIKLIKGPKGLGFSIAG--GVGNQHIPGDNSIY-----VTKIIEGGAAHKD 146

Query: 62  G-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           G ++ GD+ILAVN+V +E   H+  V  +K+  DV+ L V
Sbjct: 147 GRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKV 186

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 129

 Score = 85.9 bits (213), Expect = 1e-20
 Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 14/115 (12%)

Query: 9   PREVQIAKSDT-GFGFNVRGQV--SEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IR 64
              V++ + D    G  + G V  S  G+   I         +V +V+ G AA   G I+
Sbjct: 16  TYNVELVRKDGQSLGIRIVGYVGTSHTGEASGI---------YVKSVIPGSAAYHNGHIQ 66

Query: 65  KGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI-SVSPEEAERLEPPDDHS 118
             D+I+AV+ VN++G  +  VVE++++ G V+ LT++   +      LEPP D  
Sbjct: 67  VNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVRRKTSSSTSPLEPPSDRG 121

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 119

 Score = 85.7 bits (212), Expect = 1e-20
 Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 17/122 (13%)

Query: 3   STQQTGPREVQIAKSDTG-FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA 61
                    +++   + G FGFNV+G   +   +             VS V  G  A+  
Sbjct: 10  GIPHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVI------------VSRVAPGTPADLC 57

Query: 62  --GIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI-SVSPEEAER-LEPPDDH 117
              + +GD+++ +N  ++   TH QVV  IK+  +  S  ++  V P      +E     
Sbjct: 58  VPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNAVYDVVEESGPS 117

Query: 118 SG 119
           SG
Sbjct: 118 SG 119

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 85.5 bits (212), Expect = 1e-20
 Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 10/103 (9%)

Query: 1   MYSTQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEK 60
           +Y       + + + +   G GF++ G          I         +V  V A GAA +
Sbjct: 18  LYFQSMPQCKSITLERGPDGLGFSIVGGYGSPHGDLPI---------YVKTVFAKGAASE 68

Query: 61  AG-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVIS 102
            G +++GD+I+AVN  ++EG TH++ V ++K     ++L V+S
Sbjct: 69  DGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLS 111

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 84.7 bits (210), Expect = 1e-20
 Identities = 22/104 (21%), Positives = 35/104 (33%), Gaps = 12/104 (11%)

Query: 16  KSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNV 75
                +GF + G +           +   PL  ++ +  G  A  A +  GD ILA++  
Sbjct: 12  PGPAPWGFRLSGGI-----------DFNQPLV-ITRITPGSKAAAANLCPGDVILAIDGF 59

Query: 76  NVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSG 119
             E  TH    + IK+    L L +                 SG
Sbjct: 60  GTESMTHADAQDRIKAASYQLCLKIDRAETRLWSPQVSSGPSSG 103

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 116

 Score = 85.1 bits (211), Expect = 2e-20
 Identities = 21/107 (19%), Positives = 44/107 (41%), Gaps = 12/107 (11%)

Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
              ++I+K  +G G ++ G         +    +      +  V   GAA + G +  GD
Sbjct: 18  EMIIEISKGRSGLGLSIVGGKD------TPLNAIV-----IHEVYEEGAAARDGRLWAGD 66

Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPP 114
           +IL VN V++  ++H++ +  ++     + L V        +    P
Sbjct: 67  QILEVNGVDLRNSSHEEAITALRQTPQKVRLVVYRDEAHYRDEESGP 113

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A Length = 114

 Score = 84.8 bits (210), Expect = 2e-20
 Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 14/103 (13%)

Query: 5   QQTGPREVQIAKSDTGF-GFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG- 62
           Q   P +V + K      G ++ G            G  Y P  ++  V     A   G 
Sbjct: 21  QSMVPGKVTLQKDAQNLIGISIGG------------GAQYCPCLYIVQVFDNTPAALDGT 68

Query: 63  IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSP 105
           +  GD I  VN  +++G T  +V ++I+     +++    +  
Sbjct: 69  VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 111

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 84.7 bits (209), Expect = 2e-20
 Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 16/111 (14%)

Query: 8   GPREVQIAKSDT---GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIR 64
             + + I KSDT    +GF++     +G +       LY     V++V   G A K G++
Sbjct: 15  VTQSIHIEKSDTAADTYGFSLSSVEEDGIR------RLY-----VNSVKETGLASKKGLK 63

Query: 65  KGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPD 115
            GD IL +NN   +      + + +      L L V +    E      P 
Sbjct: 64  AGDEILEINNRAADALNSSMLKDFLSQPS--LGLLVRTYPELEEGVESGPS 112

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 87.1 bits (216), Expect = 2e-20
 Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 14/112 (12%)

Query: 8   GPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRK 65
           G   V++ K + T  G  V G + + G+ R            VS +  GG A ++  +  
Sbjct: 7   GSTVVELMKKEGTTLGLTVSGGIDKDGKPR------------VSNLRQGGIAARSDQLDV 54

Query: 66  GDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDH 117
           GD I AVN +N+    H +++ L+K+ G+ + L V    P  + +       
Sbjct: 55  GDYIKAVNGINLAKFRHDEIISLLKNVGERVVLEVEYELPPVSIQGSSVMFR 106

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 85.6 bits (212), Expect = 7e-20
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 9/97 (9%)

Query: 5   QQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-I 63
                 EV + K    FGF +RG     G     N         ++ V  GG A++ G I
Sbjct: 103 VMFRTVEVTLHKEGNTFGFVIRG-----GAHDDRNKS---RPVVITCVRPGGPADREGTI 154

Query: 64  RKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           + GDR+L+V+ + + G TH + + ++K  G   +L +
Sbjct: 155 KPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLI 191

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 96

 Score = 84.0 bits (208), Expect = 2e-20
 Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 19/105 (18%)

Query: 3   STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG 62
           S+ Q     + I K   GFGF +    S  GQ              V  +L        G
Sbjct: 5   SSGQAELMTLTIVKGAQGFGFTIAD--SPTGQ-------------RVKQILDIQGC--PG 47

Query: 63  IRKGDRILAVNNVNVEGATHKQVVELIKSG--GDVLSLTVISVSP 105
           + +GD I+ +N  NV+  +H +VV+++K    G   SL +   S 
Sbjct: 48  LCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGSG 92

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 111

 Score = 84.3 bits (209), Expect = 3e-20
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 15/99 (15%)

Query: 3   STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG 62
           +       EV++    +G GF + G  + G         +      V  ++ GG A++ G
Sbjct: 10  TVCWGHVEEVELINDGSGLGFGIVGGKTSG---------VV-----VRTIVPGGLADRDG 55

Query: 63  -IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
            ++ GD IL +   NV+G T +QV +++++ G+ + + V
Sbjct: 56  RLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLV 94

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens} Length = 97

 Score = 83.8 bits (208), Expect = 3e-20
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 9/91 (9%)

Query: 11  EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
           EV + K    FGF +RG     G     N     P+  +++V  GG A++ G I+ GDR+
Sbjct: 6   EVTLHKEGNTFGFVIRG-----GAHDDRNKSR--PV-VITSVRPGGPADREGTIKPGDRL 57

Query: 70  LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           L+V+ + + G TH + + ++K  G   +L +
Sbjct: 58  LSVDGIRLLGTTHAEAMSILKQCGQEAALLI 88

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 83.6 bits (207), Expect = 3e-20
 Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 19/94 (20%)

Query: 9   PREVQIAK--SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKG 66
              V+I K      +GF++                   PL  V AV AGG+A    +  G
Sbjct: 9   RHTVKIDKDTLLQDYGFHISES---------------LPL-TVVAVTAGGSAH-GKLFPG 51

Query: 67  DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           D+IL +NN   E  + ++ V++++   D LS+TV
Sbjct: 52  DQILQMNNEPAEDLSWERAVDILREAEDSLSITV 85

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens} Length = 97

 Score = 83.5 bits (207), Expect = 3e-20
 Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 9/91 (9%)

Query: 11  EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
           +V++ K+  G G  + G +   G  +     ++     V ++    A E  G I+ GD+I
Sbjct: 7   DVELTKNVQGLGITIAGYI---GDKKLEPSGIF-----VKSITKSSAVEHDGRIQIGDQI 58

Query: 70  LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           +AV+  N++G T++Q VE+++  G  + LT+
Sbjct: 59  IAVDGTNLQGFTNQQAVEVLRHTGQTVLLTL 89

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus} Length = 113

 Score = 84.0 bits (208), Expect = 3e-20
 Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 7/103 (6%)

Query: 11  EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
            V++ K   G G ++ G  +         G ++     V  V  GGAA + G I+  D +
Sbjct: 7   PVELEKDSEGLGISIIGMGAGADMGLEKLG-IF-----VKTVTEGGAAHRDGRIQVNDLL 60

Query: 70  LAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLE 112
           + V+  ++ G T      ++++    +   +    P E   + 
Sbjct: 61  VEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRERPGEQSEVA 103

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A Length = 120

 Score = 84.3 bits (209), Expect = 3e-20
 Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 11/107 (10%)

Query: 3   STQQTGPREVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA 61
             Q  G R V++ K  T   G ++ G V        I          ++ +   G A + 
Sbjct: 19  YFQSMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPI---------FIAMMHPTGVAAQT 69

Query: 62  G-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEE 107
             +R GDRI+ +   + EG TH Q V L+K+    + + V++     
Sbjct: 70  QKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAGGDVS 116

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 94

 Score = 82.7 bits (205), Expect = 5e-20
 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 13/96 (13%)

Query: 6   QTGPREVQIAKS-DTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIR 64
            +G   + +  +    +GF + G     G+      + + P+  V+ V   G AE A +R
Sbjct: 2   SSGSSGLTVDVAGPAPWGFRISG-----GR------DFHTPII-VTKVTERGKAEAADLR 49

Query: 65  KGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
            GD I+A+N  + E   H +    I+     L L +
Sbjct: 50  PGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQL 85

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A Length = 105

 Score = 83.2 bits (206), Expect = 6e-20
 Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 8/92 (8%)

Query: 10  REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDR 68
            E+++ K   G GF++ G V  G Q    +  +Y     V+ ++ GGAA K G ++ GD+
Sbjct: 5   MEIKLIKGPKGLGFSIAGGV--GNQHIPGDNSIY-----VTKIIEGGAAHKDGKLQIGDK 57

Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           +LAVN+V++E  TH++ V  +K+  D + L V
Sbjct: 58  LLAVNSVSLEEVTHEEAVTALKNTSDFVYLKV 89

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 130

 Score = 84.1 bits (208), Expect = 6e-20
 Identities = 25/115 (21%), Positives = 49/115 (42%), Gaps = 11/115 (9%)

Query: 3   STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG 62
           ST +     V + K   G GF++ G    G      +  L      ++ +  G A+E++ 
Sbjct: 24  STAEATVCTVTLEKMSAGLGFSLEG----GKGSLHGDKPLT-----INRIFKGAASEQSE 74

Query: 63  -IRKGDRILAVNNVNVEGATHKQVVELIKSGGD-VLSLTVISVSPEEAERLEPPD 115
            ++ GD IL +    ++G T  +   +IK+  D  +++ +   S +  E     D
Sbjct: 75  TVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQSKETTAAGD 129

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A Length = 94

 Score = 82.7 bits (205), Expect = 6e-20
 Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 8/92 (8%)

Query: 10  REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDR 68
            EV + K   G GF++ G +  G Q    +  +Y     ++ ++ GGAA+K G ++ GDR
Sbjct: 5   MEVNLLKGPKGLGFSIAGGI--GNQHIPGDNSIY-----ITKIIEGGAAQKDGRLQIGDR 57

Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           +LAVNN N++   H++ V  +K+  D++ L V
Sbjct: 58  LLAVNNTNLQDVRHEEAVASLKNTSDMVYLKV 89

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens} Length = 88

 Score = 82.3 bits (204), Expect = 7e-20
 Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 12/83 (14%)

Query: 18  DTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNV 77
              +GF ++G     G+      +   PL  +S++  GG A +A +R GD +L+++ +N 
Sbjct: 12  PAPWGFRLQG-----GK------DFNMPLT-ISSLKDGGKAAQANVRIGDVVLSIDGINA 59

Query: 78  EGATHKQVVELIKSGGDVLSLTV 100
           +G TH +    IK     L++T+
Sbjct: 60  QGMTHLEAQNKIKGCTGSLNMTL 82

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 111

 Score = 83.2 bits (206), Expect = 7e-20
 Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 9/102 (8%)

Query: 3   STQQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGEL--YAPLQHVSAVLAGGAAE 59
            +   G RE+ I K+     G ++RG             +   +     +S V   GAA 
Sbjct: 4   GSSGPGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIF-----ISKVSPTGAAG 58

Query: 60  KAG-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           + G +R G R+L VN  ++ G TH + V+L++S GD L++ V
Sbjct: 59  RDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLV 100

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 122

 Score = 83.4 bits (206), Expect = 8e-20
 Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 11/114 (9%)

Query: 3   STQQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA 61
               T   EV +     TGFG  ++G V     L S       PL  +S + A   AE+ 
Sbjct: 10  QVVHTETTEVVLTADPVTGFGIQLQGSVFATETLSS------PPL--ISYIEADSPAERC 61

Query: 62  G-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPP 114
           G ++ GDR++A+N +  E +T ++  +L++       +T+  +  + AE + P 
Sbjct: 62  GVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTL-EIEFDVAESVIPS 114

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} PDB: 3nfl_A 2vph_A Length = 107

 Score = 82.6 bits (204), Expect = 9e-20
 Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 15/102 (14%)

Query: 3   STQQTGPREVQIAKSDTG-FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA 61
                    +++   + G FGFNV+G   +   +             VS V  G  A+  
Sbjct: 12  GIPHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVI------------VSRVAPGTPADLC 59

Query: 62  --GIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
              + +GD+++ +N  ++   TH QVV  IK+  +  S  ++
Sbjct: 60  VPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELM 101

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 82.4 bits (204), Expect = 1e-19
 Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 15/94 (15%)

Query: 10  REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDR 68
            +V + + ++GFGF + G    G  +             + AV+A G+A++ G +  GD 
Sbjct: 11  LDVHLRRMESGFGFRILGGDEPGQPIL------------IGAVIAMGSADRDGRLHPGDE 58

Query: 69  ILAVNNVNVEGATHKQVVELIKSGG--DVLSLTV 100
           ++ V+ + V G TH+ V++L+        ++LTV
Sbjct: 59  LVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTV 92

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A Length = 87

 Score = 81.5 bits (202), Expect = 1e-19
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 13/92 (14%)

Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
              V +      +GF + G             + + P+  V+ V   G A+ A +R GD 
Sbjct: 3   ALTVDV-AGPAPWGFRITGGR-----------DFHTPIM-VTKVAERGKAKDADLRPGDI 49

Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           I+A+N  + EG  H +    I+     L L +
Sbjct: 50  IVAINGESAEGMLHAEAQSKIRQSPSPLRLQL 81

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 82.8 bits (205), Expect = 1e-19
 Identities = 32/91 (35%), Positives = 55/91 (60%), Gaps = 8/91 (8%)

Query: 11  EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
           E+++ K   G GF++ G V  G Q    +  +Y     V+ ++ GGAA+K G ++ GDR+
Sbjct: 27  EIKLFKGPKGLGFSIAGGV--GNQHIPGDNSIY-----VTKIIDGGAAQKDGRLQVGDRL 79

Query: 70  LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           L VNN ++E  TH++ V ++K+  +V+ L V
Sbjct: 80  LMVNNYSLEEVTHEEAVAILKNTSEVVYLKV 110

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens} Length = 90

 Score = 81.7 bits (202), Expect = 1e-19
 Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 15/84 (17%)

Query: 17  SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVN 76
               FGF ++                  P   V++V AG  AE + ++  D I+A+NN  
Sbjct: 15  KSLDFGFTIKWD---------------IPGIFVASVEAGSPAEFSQLQVDDEIIAINNTK 59

Query: 77  VEGATHKQVVELIKSGGDVLSLTV 100
                 K+  E +    +   L +
Sbjct: 60  FSYNDSKEWEEAMAKAQETGHLVM 83

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A Length = 111

 Score = 82.0 bits (203), Expect = 2e-19
 Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 11/117 (9%)

Query: 1   MYSTQQTGPR-EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAE 59
           +Y+T++ G R  +Q+ K   G GF++  +    G    I         +V  +L  GAA 
Sbjct: 3   VYNTKKVGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPI---------YVKNILPRGAAI 53

Query: 60  KAG-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPD 115
           + G ++ GDR++ VN V++ G + ++VV L++S     +++++    EEA      +
Sbjct: 54  QDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQEEAFHPREMN 110

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1 Length = 98

 Score = 81.6 bits (202), Expect = 2e-19
 Identities = 20/100 (20%), Positives = 44/100 (44%), Gaps = 10/100 (10%)

Query: 10  REVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
             V + K+    FG  +       G+++         +  +  ++    A   G ++ GD
Sbjct: 7   HMVTLDKTGKKSFGICIVR-----GEVKDSPNTKTTGI-FIKGIVPDSPAHLCGRLKVGD 60

Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEE 107
           RIL++N  +V  +T + V++LIK     + L +   + ++
Sbjct: 61  RILSLNGKDVRNSTEQAVIDLIKEADFKIELEI--QTFDK 98

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens} Length = 89

 Score = 81.2 bits (201), Expect = 2e-19
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 12/85 (14%)

Query: 16  KSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNV 75
           +    +GF ++G             +   PL  +S +  GG A +AG+  GD +L+++  
Sbjct: 10  EGPAPWGFRLQGGK-----------DFNVPLS-ISRLTPGGKAAQAGVAVGDWVLSIDGE 57

Query: 76  NVEGATHKQVVELIKSGGDVLSLTV 100
           N    TH +    I++ G+ LSL +
Sbjct: 58  NAGSLTHIEAQNKIRACGERLSLGL 82

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A Length = 102

 Score = 81.2 bits (201), Expect = 2e-19
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 8/91 (8%)

Query: 11  EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
           E+ + + ++G GF++ G +         +  ++     ++ ++ GGAA   G +   D +
Sbjct: 7   EIVLERGNSGLGFSIAGGI--DNPHVPDDPGIF-----ITKIIPGGAAAMDGRLGVNDCV 59

Query: 70  LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           L VN V+V    H + VE +K  G V+ L V
Sbjct: 60  LRVNEVDVSEVVHSRAVEALKEAGPVVRLVV 90

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 81.7 bits (202), Expect = 3e-19
 Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 8/86 (9%)

Query: 16  KSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNN 74
            S  G G  + G    G ++   +GE+ A   +++ +L GG+AE+ G + +G ++L  N 
Sbjct: 27  VSGNGLGIRIVG----GKEIPGHSGEIGA---YIAKILPGGSAEQTGKLMEGMQVLEWNG 79

Query: 75  VNVEGATHKQVVELIKSGGDVLSLTV 100
           + +   T+++V  +I        + V
Sbjct: 80  IPLTSKTYEEVQSIISQQSGEAEICV 105

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens} Length = 113

 Score = 81.4 bits (201), Expect = 3e-19
 Identities = 30/123 (24%), Positives = 47/123 (38%), Gaps = 21/123 (17%)

Query: 1   MYSTQQTGPR--EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAA 58
           M +  +       + + K   GFGF +           S  G      Q V  +L     
Sbjct: 3   MATLYKKAGLLVTIPLIKGPKGFGFAIAD---------SPTG------QKVKMILDSQWC 47

Query: 59  EKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSPEEAERLEPPDD 116
              G++KGD I  + + NV+  TH QVVE++K    G  + L ++   P    +      
Sbjct: 48  --QGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGPPSPTKTAKMGS 105

Query: 117 HSG 119
            SG
Sbjct: 106 GSG 108

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic} Length = 108

 Score = 81.2 bits (201), Expect = 3e-19
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 8/91 (8%)

Query: 11  EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
           E+   K  +  G ++ G              +Y     V +++ G AA   G I   D+I
Sbjct: 17  ELFREKDTSSLGISISGMR--DQSTTGEATGIY-----VKSLIPGSAAALDGRIEPNDKI 69

Query: 70  LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           L V++VNV+G     VVE++++ G+ + L +
Sbjct: 70  LRVDDVNVQGMAQSDVVEVLRNAGNPVRLLL 100

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 127

 Score = 81.8 bits (202), Expect = 4e-19
 Identities = 30/139 (21%), Positives = 58/139 (41%), Gaps = 17/139 (12%)

Query: 3   STQQTGPREVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA 61
              +     V++ K    G GF V+ +VS+          +      +S ++ GGAAE++
Sbjct: 3   HMIEPNVISVRLFKRKVGGLGFLVKERVSKPP--------VI-----ISDLIRGGAAEQS 49

Query: 62  G-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGY 120
           G I+ GD ILAVN+  +   ++   +E+++       + +I   PE        +     
Sbjct: 50  GLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGF--TTHLETTFTG 107

Query: 121 QQIDYTEKRSLPISIPDYS 139
                T + + P+  P  +
Sbjct: 108 DGTPKTIRVTQPLGPPTKA 126

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens} Length = 118

 Score = 80.9 bits (200), Expect = 5e-19
 Identities = 25/103 (24%), Positives = 38/103 (36%), Gaps = 11/103 (10%)

Query: 5   QQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG- 62
           Q    + V I K      G  V G  S       I         +V +V  GG   + G 
Sbjct: 21  QSMHEKVVNIQKDPGESLGMTVAGGASHREWDLPI---------YVISVEPGGVISRDGR 71

Query: 63  IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSP 105
           I+ GD +L V+ V +   +  + V L+K     + L  + V  
Sbjct: 72  IKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALEVKE 114

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A Length = 90

 Score = 80.0 bits (198), Expect = 6e-19
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 14/94 (14%)

Query: 9   PREVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKG 66
            R V + K+D  G G +++G       +             +S +  G AA++   +  G
Sbjct: 5   RRRVTVRKADAGGLGISIKGGRENKMPIL------------ISKIFKGLAADQTEALFVG 52

Query: 67  DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           D IL+VN  ++  ATH + V+ +K  G  + L V
Sbjct: 53  DAILSVNGEDLSSATHDEAVQALKKTGKEVVLEV 86

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens} Length = 112

 Score = 80.6 bits (199), Expect = 6e-19
 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 14/100 (14%)

Query: 3   STQQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA 61
           +    G R+V + K D  G G ++ G    G  +             +S +  G  A++ 
Sbjct: 22  NLYFQGIRKVLLLKEDHEGLGISITGGKEHGVPIL------------ISEIHPGQPADRC 69

Query: 62  G-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           G +  GD ILAVN VN+    HK+ V ++      +   V
Sbjct: 70  GGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEV 109

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A Length = 129

 Score = 81.0 bits (200), Expect = 6e-19
 Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 15/110 (13%)

Query: 10  REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDR 68
              ++ KS  GFGF V G                  LQ + +++  G A   G +  GD 
Sbjct: 20  IHTKLRKSSRGFGFTVVGGDEPDE-----------FLQ-IKSLVLDGPAALDGKMETGDV 67

Query: 69  ILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSPEEAERLEPPDD 116
           I++VN+  V G TH QVV++ +S   G  + L +    P   +  +P   
Sbjct: 68  IVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGYPLPFDPDDPNTS 117

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 124

 Score = 80.6 bits (199), Expect = 7e-19
 Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 12/114 (10%)

Query: 2   YSTQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA 61
           Y+        +++ K   G G ++ G              ++     V  +   G A   
Sbjct: 19  YADLPGELHIIELEKDKNGLGLSLAGNKDRS------RMSIF-----VVGINPEGPAAAD 67

Query: 62  G-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPP 114
           G +R GD +L +NN  + G +H+    +IK+    + L  I       +    P
Sbjct: 68  GRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLVFIRNEDAVNQMASGP 121

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A Length = 170

 Score = 81.9 bits (202), Expect = 8e-19
 Identities = 18/91 (19%), Positives = 38/91 (41%), Gaps = 7/91 (7%)

Query: 11  EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
            V++ K   G G ++ G  +         G ++     V  V  GGAA + G I+  D +
Sbjct: 83  PVELEKDSEGLGISIIGMGAGADMGLEKLG-IF-----VKTVTEGGAAHRDGRIQVNDLL 136

Query: 70  LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           + V+  ++ G T      ++++    +   +
Sbjct: 137 VEVDGTSLVGVTQSFAASVLRNTKGRVRFMI 167

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 123

 Score = 80.5 bits (199), Expect = 9e-19
 Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 15/109 (13%)

Query: 10  REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDR 68
               + KS+ GFGF + G                  LQ V +V+  G A + G +  GD 
Sbjct: 21  LSTTLKKSNMGFGFTIIGGDEPDE-----------FLQ-VKSVIPDGPAAQDGKMETGDV 68

Query: 69  ILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSPEEAERLEPPD 115
           I+ +N V V G TH  VV+L +S   G  ++L +    P   +  +P +
Sbjct: 69  IVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYPLPFDPEDPAN 117

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A* Length = 91

 Score = 78.9 bits (195), Expect = 1e-18
 Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 12/83 (14%)

Query: 18  DTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNV 77
              +GF + G             +   PL  +S V  G  A  A +  GD I A++  N 
Sbjct: 12  PGPWGFRLVGGK-----------DFEQPLA-ISRVTPGSKAALANLCIGDVITAIDGENT 59

Query: 78  EGATHKQVVELIKSGGDVLSLTV 100
              TH +    IK   D L+LTV
Sbjct: 60  SNMTHLEAQNRIKGCTDNLTLTV 82

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 82.1 bits (203), Expect = 1e-18
 Identities = 27/129 (20%), Positives = 54/129 (41%), Gaps = 12/129 (9%)

Query: 9   PREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKG 66
             EV +     TGFG  ++G V     L   +         +S + A   AE+ G ++ G
Sbjct: 7   TTEVVLTADPVTGFGIQLQGSVFATETL---SSPPL-----ISYIEADSPAERCGVLQIG 58

Query: 67  DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQQIDYT 126
           DR++A+N +  E +T ++  +L++       +T+      +      P   + + ++   
Sbjct: 59  DRVMAINGIPTEDSTFEEANQLLRDSSITSKVTL--EIEFDVAESVIPSSGTFHVKLPKK 116

Query: 127 EKRSLPISI 135
               L I+I
Sbjct: 117 HSVELGITI 125

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 76.7 bits (189), Expect = 9e-17
 Identities = 17/93 (18%), Positives = 40/93 (43%), Gaps = 12/93 (12%)

Query: 10  REVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
             V++ K      G  +          R     L      +S +  G  A + G +  GD
Sbjct: 109 FHVKLPKKHSVELGITISS-----PSSRKPGDPLV-----ISDIKKGSVAHRTGTLELGD 158

Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           ++LA++N+ ++  + +  V++++   D++ L +
Sbjct: 159 KLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKI 191

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A Length = 106

 Score = 79.3 bits (196), Expect = 1e-18
 Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 11/102 (10%)

Query: 1   MYSTQQTGPREVQIA-KSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAE 59
              +    P  + +  K   G G ++      G     I         +V +V+ GGAA+
Sbjct: 2   PLGSDHKEPEIITVTLKKQNGMGLSIVAAKGAGQDKLGI---------YVKSVVKGGAAD 52

Query: 60  KAG-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
             G +  GD++L+V+  ++ G + ++  EL+     V++L V
Sbjct: 53  VDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEV 94

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A Length = 95

 Score = 79.0 bits (195), Expect = 1e-18
 Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 8/95 (8%)

Query: 8   GPREVQIAKS-DTGFGFNVRGQV-SEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRK 65
           G  E+++    D   GF++ G V   G   R  +  ++     V+ V   G A K  ++ 
Sbjct: 1   GSMEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIF-----VTRVQPEGPASKL-LQP 54

Query: 66  GDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           GD+I+  N  +     H Q V L+K+  + + L +
Sbjct: 55  GDKIIQANGYSFINIEHGQAVSLLKTFQNTVELII 89

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 119

 Score = 79.8 bits (197), Expect = 1e-18
 Identities = 23/112 (20%), Positives = 48/112 (42%), Gaps = 14/112 (12%)

Query: 11  EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
            +   +   G GF++ G      + + I          V  V   G A + G I+KG+ +
Sbjct: 19  TILHKEEGAGLGFSLAG--GADLENKVI---------TVHRVFPNGLASQEGTIQKGNEV 67

Query: 70  LAVNNVNVEGATHKQVVELIKSGGDVLSLTVIS--VSPEEAERLEPPDDHSG 119
           L++N  +++G TH   + +++   +     +++  ++PE    L      SG
Sbjct: 68  LSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKLTPEAMPDLNSSGPSSG 119

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B Length = 112

 Score = 79.4 bits (196), Expect = 2e-18
 Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 16/113 (14%)

Query: 10  REVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
             V++ K    G GF V+ +VS+   +             +S ++ GGAAE++G I+ GD
Sbjct: 3   ISVRLFKRKVGGLGFLVKERVSKPPVI-------------ISDLIRGGAAEQSGLIQAGD 49

Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEA-ERLEPPDDHSG 119
            ILAVN+  +   ++   +E+++       + +I   PE     LE      G
Sbjct: 50  IILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTGDG 102

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 79.0 bits (195), Expect = 2e-18
 Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 12/95 (12%)

Query: 10  REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDR 68
             V++ KS    G  + G     G           PL  +  +  GG+A   G ++ G  
Sbjct: 8   TLVRVKKSAATLGIAIEG-----GA------NTRQPLPRIVTIQRGGSAHNCGQLKVGHV 56

Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISV 103
           IL VN + + G  H++   +I           I  
Sbjct: 57  ILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDF 91

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus} Length = 85

 Score = 78.5 bits (194), Expect = 2e-18
 Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 15/93 (16%)

Query: 11  EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
             ++ KS  GFGF V G                  LQ + +++  G A   G +  GD I
Sbjct: 3   HTKLRKSSRGFGFTVVGGDEPDE-----------FLQ-IKSLVLDGPAALDGKMETGDVI 50

Query: 70  LAVNNVNVEGATHKQVVELIKS--GGDVLSLTV 100
           ++VN+  V G TH QVV++ +S   G  + L +
Sbjct: 51  VSVNDTCVLGHTHAQVVKIFQSIPIGASVDLEL 83

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 113

 Score = 79.0 bits (195), Expect = 2e-18
 Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 17/94 (18%)

Query: 10  REVQIAKS-DTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
           + V+I K+ D   G  VR +             +      +S ++ GGAAEK+G + +GD
Sbjct: 27  KIVRIEKARDIPLGATVRNE----------MDSVI-----ISRIVKGGAAEKSGLLHEGD 71

Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
            +L +N + + G    +V +L+      L+  +I
Sbjct: 72  EVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLI 105

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 126

 Score = 79.5 bits (196), Expect = 2e-18
 Identities = 23/112 (20%), Positives = 46/112 (41%), Gaps = 18/112 (16%)

Query: 11  EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
           + ++   + G G  V                   P   +S ++  GAA   G ++ GD +
Sbjct: 30  QTKLTVGNLGLGLVVIQN---------------GPYLQISHLINKGAAASDGILQPGDVL 74

Query: 70  LAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSPEEAERLEPPDDHSG 119
           ++V + NV G T ++ ++L+++   G VL +       E  +  +     SG
Sbjct: 75  ISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRGFLEIPQEWQDSGPSSG 126

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A Length = 107

 Score = 78.6 bits (194), Expect = 3e-18
 Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 8/93 (8%)

Query: 9   PREVQIAK-SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGD 67
              V + +    GFG  + G   +    +S    +      +S VL GG AE   +++ D
Sbjct: 8   QHTVTLHRAPGFGFGIAISGGR-DNPHFQSGETSIV-----ISDVLKGGPAE-GQLQEND 60

Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           R+  VN V+++   H   V+ ++  G    +T+
Sbjct: 61  RVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITI 93

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1 Length = 118

 Score = 78.6 bits (194), Expect = 3e-18
 Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 18/116 (15%)

Query: 1   MYSTQQTGPREVQI--AKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAA 58
           M+S +Q   ++V++   K +      +     EGG   S  G++      VSAV  GGAA
Sbjct: 8   MFSPEQIAGKDVRLLRIKKEGSLDLAL-----EGGV-DSPVGKVV-----VSAVYEGGAA 56

Query: 59  EKAG-IRKGDRILAVNNVNVEGATHKQVVELIK----SGGDVLSLTVISVSPEEAE 109
           E+ G + KGD I+A+N   V   T  +    ++     GGD + L V    P+E +
Sbjct: 57  ERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPPKEYD 112

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens} Length = 92

 Score = 77.7 bits (192), Expect = 4e-18
 Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 15/93 (16%)

Query: 10  REVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
             + + K    G G ++ G+ ++ G        ++     VS ++ GG A+  G + +GD
Sbjct: 6   LTIGLQKKPGKGLGLSIVGKRNDTG--------VF-----VSDIVKGGIADADGRLMQGD 52

Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           +IL VN  +V  AT + V  L+K     ++L V
Sbjct: 53  QILMVNGEDVRNATQEAVAALLKCSLGTVTLEV 85

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens} Length = 90

 Score = 77.7 bits (192), Expect = 4e-18
 Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 13/91 (14%)

Query: 10 REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDR 68
          +++ + + +TGFGF + G    G  +            ++  ++  GAA+  G +R GD 
Sbjct: 4  QDIFLWRKETGFGFRILGGNEPGEPI------------YIGHIVPLGAADTDGRLRSGDE 51

Query: 69 ILAVNNVNVEGATHKQVVELIKSGGDVLSLT 99
          +++V+   V G +H+ VV+L++       + 
Sbjct: 52 LISVDGTPVIGKSHQLVVQLMQQAAKQGHVN 82

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens} Length = 121

 Score = 78.2 bits (193), Expect = 4e-18
 Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 13/104 (12%)

Query: 1   MYSTQQTGPR-EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAE 59
            Y+T++ G R  +Q+ K   G GF++  +    G    I         +V  +L  GAA 
Sbjct: 22  SYNTKKIGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPI---------YVKNILPRGAAI 72

Query: 60  KAG-IRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTV 100
           + G ++ GDR++ VN V++ G + ++VV L++S      +SL V
Sbjct: 73  QDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLV 116

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} Length = 101

 Score = 77.9 bits (192), Expect = 5e-18
 Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 12/105 (11%)

Query: 3   STQQTGPREVQIAKS-DTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA 61
            +     REV + K    G G  +           S+          ++ +L GG AE++
Sbjct: 4   GSSGDNCREVHLEKRRGEGLGVALVE-----SGWGSLLPTAV-----IANLLHGGPAERS 53

Query: 62  G-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSP 105
           G +  GDR+ A+N  ++ G         ++      S+T+  V  
Sbjct: 54  GALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVHC 98

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens} Length = 92

 Score = 77.4 bits (191), Expect = 5e-18
 Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 19/108 (17%)

Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
           P +V + KS     + +            +   ++     V  +     A + G I++GD
Sbjct: 3   PTKVTLVKSAKNEEYGL-----------RLASHIF-----VKEISQDSLAARDGNIQEGD 46

Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPD 115
            +L +N    E  +      LI+     L + V     E A  L  PD
Sbjct: 47  VVLKINGTVTENMSLTDAKTLIERSKGKLKMVV--QRDERATLLNVPD 92

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A Length = 124

 Score = 77.9 bits (192), Expect = 7e-18
 Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 15/102 (14%)

Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
            + V+  K D   G  + G    G         ++     V+ VL    A K G+ +GD+
Sbjct: 30  MKLVKFRKGD-SVGLRLAGGNDVG---------IF-----VAGVLEDSPAAKEGLEEGDQ 74

Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAER 110
           IL VNNV+      ++ V  +        +T+++   ++  R
Sbjct: 75  ILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYR 116

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A Length = 125

 Score = 77.5 bits (191), Expect = 1e-17
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 14/94 (14%)

Query: 9   PREVQIAKSDTGF-GFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKG 66
           P +V + K      G ++ G            G  Y P  ++  V     A   G +  G
Sbjct: 20  PGKVTLQKDAQNLIGISIGG------------GAQYCPCLYIVQVFDNTPAALDGTVAAG 67

Query: 67  DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           D I  VN  +++G T  +V ++I+     +++  
Sbjct: 68  DEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHY 101

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A Length = 103

 Score = 76.3 bits (188), Expect = 1e-17
 Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 8/99 (8%)

Query: 4   TQQTGPREVQIAKS-DTGFGFNVR-GQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA 61
             +   +E+++    D   GF++  G    G   R  +  ++     V+ V   G A K 
Sbjct: 5   GHELAKQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIF-----VTRVQPEGPASKL 59

Query: 62  GIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
            ++ GD+I+  N  +     H Q V L+K+  + + L +
Sbjct: 60  -LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELII 97

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} Length = 95

 Score = 76.2 bits (188), Expect = 1e-17
 Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 16/103 (15%)

Query: 10  REVQIAKSDTG--FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKG 66
            +V + K D+G   G  +  +  E G        ++     +  +L GG A + G +   
Sbjct: 5   LQVALHKRDSGEQLGIKLVRRTDEPG--------VF-----ILDLLEGGLAAQDGRLSSN 51

Query: 67  DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAE 109
           DR+LA+N  +++  T +   ++I++ G+ ++LT+      E E
Sbjct: 52  DRVLAINGHDLKYGTPELAAQIIQASGERVNLTIARPGKPEIE 94

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 77.9 bits (192), Expect = 2e-17
 Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 17/94 (18%)

Query: 9   PREVQIAK-SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGD 67
           PREV + K  D   G  ++           I+  ++     V  V A   A   G+R GD
Sbjct: 5   PREVILCKDQDGKIGLRLKS----------IDNGIF-----VQLVQANSPASLVGLRFGD 49

Query: 68  RILAVNNVNVEGATHKQVVELIK-SGGDVLSLTV 100
           ++L +N  N  G +  +  +++K + G+ +++T+
Sbjct: 50  QVLQINGENCAGWSSDKAHKVLKQAFGEKITMTI 83

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 69.9 bits (171), Expect = 1e-14
 Identities = 15/97 (15%), Positives = 40/97 (41%), Gaps = 5/97 (5%)

Query: 5   QQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIR 64
           +Q    ++ +   D  F   +       G +             +++++   +A + G+ 
Sbjct: 72  KQAFGEKITMTIRDRPFERTITMHKDSTGHV-----GFIFKNGKITSIVKDSSAARNGLL 126

Query: 65  KGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
               I  +N  NV G    Q+ +++ + G V+++T++
Sbjct: 127 TEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIM 163

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 108

 Score = 75.9 bits (187), Expect = 3e-17
 Identities = 20/100 (20%), Positives = 47/100 (47%), Gaps = 10/100 (10%)

Query: 3   STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG 62
           +      + V++ K   G GF++         L      +      + +++A G AE++G
Sbjct: 10  ALWSPEVKIVELVKDCKGLGFSILDY---QDPLDPTRSVIV-----IRSLVADGVAERSG 61

Query: 63  -IRKGDRILAVNNVNVEGATHKQVVELIKS-GGDVLSLTV 100
            +  GDR+++VN   ++  +  + VE++K+    ++ L +
Sbjct: 62  GLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGI 101

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1 Length = 117

 Score = 75.2 bits (185), Expect = 6e-17
 Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 8/107 (7%)

Query: 9   PREVQIAK-SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGD 67
              V + K S  GFG  V G     G+           +  +S VL GG A+   +++ D
Sbjct: 15  QYTVTLQKDSKRGFGIAVSG-----GRDNPHFENGETSI-VISDVLPGGPAD-GLLQEND 67

Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPP 114
           R++ VN   +E   H   V+ ++  G + ++ V      +   L  P
Sbjct: 68  RVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKRPRKVQVAPLSGP 114

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens} Length = 128

 Score = 74.8 bits (184), Expect = 1e-16
 Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 12/110 (10%)

Query: 10  REVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
             + I +  T G GF+V    S+      I          V  V  G  A++   +++ D
Sbjct: 27  EYIDIERPSTGGLGFSVVALRSQNLGKVDI---------FVKDVQPGSVADRDQRLKEND 77

Query: 68  RILAVNNVNV-EGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDD 116
           +ILA+N+  + +  +H+Q + L++     L L V             P  
Sbjct: 78  QILAINHTPLDQNISHQQAIALLQQTTGSLRLIVAREPVHTKSSTSGPSS 127

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A Length = 94

 Score = 72.7 bits (178), Expect = 3e-16
 Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 16/96 (16%)

Query: 10  REVQIAKSDT---GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKG 66
             + I KSDT    +GF++     +G +       LY     V++V   G A K G++ G
Sbjct: 8   HSIHIEKSDTAADTYGFSLSSVEEDGIR------RLY-----VNSVKETGLASKKGLKAG 56

Query: 67  DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVIS 102
           D IL +NN   +      + + +      L L V +
Sbjct: 57  DEILEINNRAADALNSSMLKDFLSQ--PSLGLLVRT 90

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens} Length = 88

 Score = 72.4 bits (178), Expect = 3e-16
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 17/91 (18%)

Query: 11  EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
            V + KS     + +R              +++     V  +   G A K G + +GD I
Sbjct: 3   GVLLMKSRANEEYGLRLG-----------SQIF-----VKEMTRTGLATKDGNLHEGDII 46

Query: 70  LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           L +N    E  +     +LI+     L L V
Sbjct: 47  LKINGTVTENMSLTDARKLIEKSRGKLQLVV 77

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens} Length = 95

 Score = 72.5 bits (178), Expect = 4e-16
 Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 15/101 (14%)

Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
            +EV + KS+   G  +             NG  YA    +  +  GG  +    I  GD
Sbjct: 6   EKEVNVYKSEDSLGLTITD-----------NGVGYA---FIKRIKDGGVIDSVKTICVGD 51

Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEA 108
            I ++N  N+ G  H  V + +K        T+  + P+++
Sbjct: 52  HIESINGENIVGWRHYDVAKKLKELKKEELFTMKLIEPKKS 92

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 117

 Score = 72.4 bits (178), Expect = 6e-16
 Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 12/101 (11%)

Query: 3   STQQTGPREVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA 61
             Q       ++ K  + G GF+V G  SE      I          V  +  G  A + 
Sbjct: 15  MAQGRHVEVFELLKPPSGGLGFSVVGLRSENRGELGI---------FVQEIQEGSVAHRD 65

Query: 62  G-IRKGDRILAVNNVNV-EGATHKQVVELIKSGGDVLSLTV 100
           G +++ D+ILA+N   + +  TH+Q + +++   D + L +
Sbjct: 66  GRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVI 106

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1 Length = 109

 Score = 72.1 bits (177), Expect = 7e-16
 Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 11/92 (11%)

Query: 10  REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDR 68
             V     +TG G  + G     G  R+    +Y     +  V+ GG   K G ++ GD+
Sbjct: 16  FRVITVTKETGLGLKILG-----GINRNEGPLVY-----IHEVIPGGDCYKDGRLKPGDQ 65

Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           ++++N  ++ G + ++   +I           
Sbjct: 66  LVSINKESMIGVSFEEAKSIITRAKLRSESPW 97

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A Length = 97

 Score = 71.2 bits (175), Expect = 8e-16
 Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 16/94 (17%)

Query: 10  REVQIAK-SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
           R +Q  K ++   G  ++   +E                 V+ +L GG   + G +  GD
Sbjct: 14  RLIQFEKVTEEPMGICLKL--NEKQSC------------TVARILHGGMIHRQGSLHVGD 59

Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
            IL +N  NV   +  Q+ + +K    ++SL VI
Sbjct: 60  EILEINGTNVTNHSVDQLQKAMKETKGMISLKVI 93

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Length = 96

 Score = 71.2 bits (175), Expect = 1e-15
 Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 17/101 (16%)

Query: 10  REVQIAK-SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
             V + K +    G ++    +E G               ++ ++ G   E    +++GD
Sbjct: 10  FNVDLMKKAGKELGLSLSP--NEIG--------CT-----IADLIQGQYPEIDSKLQRGD 54

Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEA 108
            I   N   +EG   +    L K     +S+ V    P  A
Sbjct: 55  IITKFNGDALEGLPFQVSYALFKGANGKVSMEVTRPKPAAA 95

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A Length = 127

 Score = 71.8 bits (176), Expect = 1e-15
 Identities = 21/104 (20%), Positives = 46/104 (44%), Gaps = 12/104 (11%)

Query: 3   STQQTGPREVQIAKSDT-GFGFNVRGQV-SEGGQLRSINGELYAPLQHVSAVLAGGAAEK 60
            + +    E+ +  S + G G +++G    E G    I          + +++ GGAA K
Sbjct: 20  ESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGI---------FIKSIIHGGAAFK 70

Query: 61  AG-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISV 103
            G +R  D+++AVN   + G ++ + +E ++    +       +
Sbjct: 71  DGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMI 114

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A Length = 108

 Score = 70.5 bits (173), Expect = 2e-15
 Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 13/109 (11%)

Query: 11  EVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDR 68
            V +        G ++ GQ +E G    I         ++ +++ GGA    G I  GD 
Sbjct: 8   TVTLNMEKYNFLGISIVGQSNERGDG-GI---------YIGSIMKGGAVAADGRIEPGDM 57

Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVS-PEEAERLEPPDD 116
           +L VN++N E  ++   V +++         V++V+        E   D
Sbjct: 58  LLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKSGGGSGNEVWID 106

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster} Length = 106

 Score = 70.5 bits (173), Expect = 2e-15
 Identities = 21/113 (18%), Positives = 38/113 (33%), Gaps = 25/113 (22%)

Query: 11  EVQIAK-SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDR 68
            V + K +    G ++    +E G               ++ ++ G   E    +++GD 
Sbjct: 5   NVDLMKKAGKELGLSLSP--NEIG--------CT-----IADLIQGQYPEIDSKLQRGDI 49

Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQ 121
           I   N   +EG   +    L K     +S+ V         R +P    SG  
Sbjct: 50  ITKFNGDALEGLPFQVCYALFKGANGKVSMEVT--------RPKPGSGGSGSL 94

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A Length = 81

 Score = 69.6 bits (171), Expect = 3e-15
 Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 17/91 (18%)

Query: 11  EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
           +V + KS     + +            +   ++     V  +     A + G I++GD +
Sbjct: 3   KVTLVKSRKNEEYGL-----------RLASHIF-----VKEISQDSLAARDGNIQEGDVV 46

Query: 70  LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           L +N    E  +      LI+     L + V
Sbjct: 47  LKINGTVTENMSLTDAKTLIERSKGKLKMVV 77

>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A Length = 115

 Score = 70.5 bits (173), Expect = 3e-15
 Identities = 22/106 (20%), Positives = 39/106 (36%), Gaps = 32/106 (30%)

Query: 130 SLPISIPDYSYVNTED--ESFVVFNIYMAGRHLCSRR----------------------- 164
           ++  SIP+    + +    ++V +NI++ G   C  R                       
Sbjct: 3   AMHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAF 62

Query: 165 -------LTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDA 203
                  LT  +++ RR  LE Y++ V    ++  SE    FL  A
Sbjct: 63  PPKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRA 108

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A Length = 131

 Score = 70.2 bits (172), Expect = 4e-15
 Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 11/96 (11%)

Query: 8   GPREVQIAK-SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRK 65
             ++  + + S    G  V G     G+  + +G L A    ++ V  G  A+  G +R 
Sbjct: 36  RLKDGSVPRDSGAMLGLKVVG-----GK-MTESGRLCA---FITKVKKGSLADTVGHLRP 86

Query: 66  GDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
           GD +L  N   ++GAT ++V  +I        + ++
Sbjct: 87  GDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELV 122

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1 Length = 88

 Score = 68.9 bits (169), Expect = 5e-15
 Identities = 18/94 (19%), Positives = 40/94 (42%), Gaps = 16/94 (17%)

Query: 10  REVQIAKS-DTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
           R VQ  K+ D   G  ++   +E                 V+ ++ GG   + G +  GD
Sbjct: 3   RLVQFQKNTDEPMGITLKM--NELNHC------------IVARIMHGGMIHRQGTLHVGD 48

Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
            I  +N ++V   T +Q+ ++++     ++  ++
Sbjct: 49  EIREINGISVANQTVEQLQKMLREMRGSITFKIV 82

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 68.9 bits (169), Expect = 7e-15
 Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 17/102 (16%)

Query: 3   STQQTGP--REVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAE 59
           S+  +G   + V +       +GF ++G     G       E   PL  VS +  GG A 
Sbjct: 2   SSGSSGGSFQYVPVQLQGGAPWGFTLKG-----GL------EHCEPLT-VSKIEDGGKAA 49

Query: 60  KAG-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
            +  +R GD ++ +N   + G + ++ + LIK    +L L V
Sbjct: 50  LSQKMRTGDELVNINGTPLYG-SRQEALILIKGSFRILKLIV 90

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 74.9 bits (183), Expect = 8e-15
 Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 8/115 (6%)

Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
             E+ + + ++G GF++ G           +  ++     ++ ++ GGAA + G +R  D
Sbjct: 60  YEEITLERGNSGLGFSIAGGTDN--PHIGDDPSIF-----ITKIIPGGAAAQDGRLRVND 112

Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQQ 122
            IL VN V+V   TH   VE +K  G ++ L V+   P   + +E          
Sbjct: 113 SILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGL 167

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 74.6 bits (182), Expect = 9e-15
 Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 14/112 (12%)

Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
           PR + I +  TG GFN+ G     G               +S +LAGG A+ +G +RKGD
Sbjct: 308 PRRIVIHRGSTGLGFNIVGGEDGEGIF-------------ISFILAGGPADLSGELRKGD 354

Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSG 119
           +IL+VN V++  A+H+Q    +K+ G  +++       E +       D   
Sbjct: 355 QILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAKIHDLRE 406

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 48.4 bits (114), Expect = 2e-06
 Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 8/109 (7%)

Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRK-GD 67
             E+++ K   G GF++ G V      + I G+      +V+ ++ GGAA K G  + GD
Sbjct: 155 VMEIKLIKGPKGLGFSIAGGVGN----QHIPGD---NSIYVTKIIEGGAAHKDGRLQIGD 207

Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDD 116
           +ILAVN+V +E   H+  V  +K+  DV+ L V   S         P D
Sbjct: 208 KILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSNAYLSDSYAPPD 256

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 73.9 bits (180), Expect = 9e-15
 Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 3/63 (4%)

Query: 49  VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEA 108
           + +++ GG AE+ G+R G RI+ +N  +V    H+++V+ + +    + +  +   P   
Sbjct: 319 ICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTM---PAAM 375

Query: 109 ERL 111
            RL
Sbjct: 376 FRL 378

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 61.1 bits (147), Expect = 1e-10
 Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 3/92 (3%)

Query: 32  GGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVELIK 90
           G  +         P   ++ ++ GG A ++G +  GD+I+++N  ++ G        +IK
Sbjct: 219 GVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIK 278

Query: 91  S--GGDVLSLTVISVSPEEAERLEPPDDHSGY 120
                  + L ++S  P     ++ PD     
Sbjct: 279 GLKNQTQVKLNIVSCPPVTTVLIKRPDLKYQL 310

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 69.5 bits (170), Expect = 5e-14
 Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 49  VSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEE 107
           ++ ++ G   E    +++GD I   N   +EG   +    L K     +S+ V    P  
Sbjct: 140 IADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTRPKPTL 199

Query: 108 AERLEP 113
                 
Sbjct: 200 RTEAPK 205

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 61.1 bits (148), Expect = 4e-11
 Identities = 17/128 (13%), Positives = 39/128 (30%), Gaps = 20/128 (15%)

Query: 11  EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
            +++       G  V G     G+   +          ++ V   G       ++  D I
Sbjct: 21  LIELKVEKKPMGVIVCG-----GKNNHVTTGCV-----ITHVYPEGQVAADKRLKIFDHI 70

Query: 70  LAVNNVNVEGA--THKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQQIDYTE 127
             +N   +     T  +V +L  +  +      +        R +PP+       +    
Sbjct: 71  CDINGTPIHVGSMTTLKVHQLFHTTYEKAVTLTVF-------RADPPELEKFNVDLMKKA 123

Query: 128 KRSLPISI 135
            + L +S+
Sbjct: 124 GKELGLSL 131

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A Length = 391

 Score = 66.4 bits (161), Expect = 3e-12
 Identities = 26/140 (18%), Positives = 45/140 (32%), Gaps = 26/140 (18%)

Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
            + V+  K D   G  + G     G    I          V+ VL    A K G+ +GD+
Sbjct: 10  MKLVKFRKGD-SVGLRLAG-----GNDVGI---------FVAGVLEDSPAAKEGLEEGDQ 54

Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQQIDYTEK 128
           IL VNNV+      ++ V  +        +T++                  Y++I  ++ 
Sbjct: 55  ILRVNNVDFTNIIREEAVLFLLDLPKGEEVTIL-----------AQKKKDVYRRIVESDV 103

Query: 129 RSLPISIPDYSYVNTEDESF 148
                    + Y        
Sbjct: 104 GDSFYIRTHFEYEKESPYGL 123

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 124

 Score = 61.8 bits (150), Expect = 4e-12
 Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 14/109 (12%)

Query: 10  REVQIAK--SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKG 66
            EV + +  S    G  V  +  +       +  +Y     +S +     A K G IR+G
Sbjct: 21  EEVDLYRMNSQDKLGLTVCYRTDDED-----DIGIY-----ISEIDPNSIAAKDGRIREG 70

Query: 67  DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPD 115
           DRI+ +N + V+       +   +   +  SL +     +  E     D
Sbjct: 71  DRIIQINGIEVQNREEAVALLTSEENKNF-SLLIARPELQLDEGWMDDD 118

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} Length = 263

 Score = 63.6 bits (154), Expect = 9e-12
 Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 15/118 (12%)

Query: 3   STQQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA 61
                  R V + K+D  G G +++G       +             +S +  G AA++ 
Sbjct: 72  EALLLQRRRVTVRKADAGGLGISIKGGRENKMPIL------------ISKIFKGLAADQT 119

Query: 62  G-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHS 118
             +  GD IL+VN  ++  ATH + V+ +K  G  +    +    E +   +     +
Sbjct: 120 EALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVV-LEVKYMKEVSPYFKNSAGGT 176

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 91

 Score = 58.6 bits (142), Expect = 3e-11
 Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 19/101 (18%)

Query: 10  REVQIAKS-DTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
           R V I K+     G   R +           GEL      ++ +L GG   + G +  GD
Sbjct: 8   RMVGIRKTAGEHLGVTFRVE----------GGELV-----IARILHGGMVAQQGLLHVGD 52

Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEA 108
            I  VN   V G+  + + EL+++    + L ++S  P   
Sbjct: 53  IIKEVNGQPV-GSDPRALQELLRNASGSVILKILS-GPSSG 91

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens} Length = 468

 Score = 62.2 bits (150), Expect = 9e-11
 Identities = 26/139 (18%), Positives = 45/139 (32%), Gaps = 26/139 (18%)

Query: 10  REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRI 69
           + V+  K D   G  + G     G    I          V+ VL    A K G+ +GD+I
Sbjct: 3   KLVKFRKGD-SVGLRLAG-----GNDVGI---------FVAGVLEDSPAAKEGLEEGDQI 47

Query: 70  LAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQQIDYTEKR 129
           L VNNV+      ++ V  +        +T++                  Y++I  ++  
Sbjct: 48  LRVNNVDFTNIIREEAVLFLLDLPKGEEVTIL-----------AQKKKDVYRRIVESDVG 96

Query: 130 SLPISIPDYSYVNTEDESF 148
                   + Y        
Sbjct: 97  DSFYIRTHFEYEKESPYGL 115

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A Length = 195

 Score = 55.3 bits (132), Expect = 3e-09
 Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 7/118 (5%)

Query: 20  GFGFNVR-GQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVE 78
             GF++  G    G   R  +  ++     V+ V   G A K  ++ GD+I+  N  +  
Sbjct: 3   ELGFSISGGVGGRGNPFRPDDDGIF-----VTRVQPEGPASKL-LQPGDKIIQANGYSFI 56

Query: 79  GATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQQIDYTEKRSLPISIP 136
              H Q V L+K+  + + L ++      A++               +   +    + 
Sbjct: 57  NIEHGQAVSLLKTFQNTVELIIVREVGNGAKQEIRVRVEKDGGSGGVSSVPTNLEVVA 114

>2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607, structural genomics,protein structure initiative PSI; NMR {Homo sapiens} Length = 128

 Score = 53.3 bits (128), Expect = 4e-09
 Identities = 22/112 (19%), Positives = 35/112 (31%), Gaps = 36/112 (32%)

Query: 124 DYTEKRSLPISIPDYSYVNTEDE-----SFVVFNIYMA---GRHLCSRR----------- 164
            +     L + IP               S +VF + +     RH   RR           
Sbjct: 3   HHHHHLELEVHIPSVGPEAEGPRQSPEKSHMVFRVEVLCSGRRHTVPRRYSEFHALHKRI 62

Query: 165 ----------------LTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFL 200
                              + L+ RR+GLE Y++ +  +      EL+ EFL
Sbjct: 63  KKLYKVPDFPSKRLPNWRTRGLEQRRQGLEAYIQGILYLNQEVPKELL-EFL 113

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4 Length = 113

 Score = 52.7 bits (127), Expect = 5e-09
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 11/69 (15%)

Query: 49  VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV-------- 100
           +  V+ G  A +AG+R GD ILA+    V+ A    V E +++    L++ +        
Sbjct: 39  IHKVILGSPAHRAGLRPGDVILAIGEQMVQNAE--DVYEAVRT-QSQLAVQIRRGRETLT 95

Query: 101 ISVSPEEAE 109
           + V+PE  E
Sbjct: 96  LYVTPEVTE 104

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1 Length = 325

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 11/69 (15%)

Query: 49  VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV-------- 100
           +  V+ G  A +AG+R GD ILA+    V+ A  + V E +++    L++ +        
Sbjct: 260 IHKVILGSPAHRAGLRPGDVILAIGEQMVQNA--EDVYEAVRT-QSQLAVQIRRGRETLT 316

Query: 101 ISVSPEEAE 109
           + V+PE  E
Sbjct: 317 LYVTPEVTE 325

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 3nwu_A 2ytw_A 2joa_A Length = 332

 Score = 53.4 bits (129), Expect = 4e-08
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 11/77 (14%)

Query: 49  VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV-------- 100
           +  V+    AE  G+++ D I+++N  +V  A    V ++IK     L++ V        
Sbjct: 258 IIEVIPDTPAEAGGLKENDVIISINGQSVVSAN--DVSDVIKR-ESTLNMVVRRGNEDIM 314

Query: 101 ISVSPEEAERLEPPDDH 117
           I+V PEE + LE    H
Sbjct: 315 ITVIPEEIDPLEHHHHH 331

>2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex, transport protein, phosphatidylinositol 3-phosphate binding, nucleotide-binding; 2.20A {Homo sapiens} Length = 134

 Score = 50.6 bits (121), Expect = 5e-08
 Identities = 17/109 (15%), Positives = 29/109 (26%), Gaps = 34/109 (31%)

Query: 128 KRSLPISIPDYSYVNTEDESFVVFNIYMA---GRHLCSRR-------------------- 164
           K  + ISIP Y       ++   F + +          RR                    
Sbjct: 3   KDPIKISIPRYVLCGQGKDAHFEFEVKITVLDETWTVFRRYSRFREMHKTLKLKYAELAA 62

Query: 165 -----------LTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTD 202
                        E+ +  RR  LE YL    +V + + +  +      
Sbjct: 63  LEFPPKKLFGNKDERVIAERRSHLEKYLRDFFSVMLQSATSPLHINKVG 111

>1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase; 1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A Length = 154

 Score = 50.7 bits (121), Expect = 5e-08
 Identities = 16/132 (12%), Positives = 37/132 (28%), Gaps = 35/132 (26%)

Query: 128 KRSLP-ISIPDYSYVNTEDESFVVFNIYMA------------------------------ 156
           K S P +SIP       + + F V+ + ++                              
Sbjct: 4   KESCPSVSIPSSDEHREKKKRFTVYKVLVSVGRSEWFVFRRYAEFDKLYNSLKKQFPAMA 63

Query: 157 ----GRHLCSRRLTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDALDENGTNIS 212
                + +         +  RR GL  +++ +     +     ++ FL      + ++ S
Sbjct: 64  LKIPAKRIFGDNFDPDFIKQRRAGLNEFIQNLVRYPELYNHPDVRAFLQMDSPRHQSDPS 123

Query: 213 SPVDIKILLPDR 224
              D +      
Sbjct: 124 EDEDERSTSKPH 135

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens} Length = 112

 Score = 48.4 bits (116), Expect = 1e-07
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 11/67 (16%)

Query: 49  VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV-------- 100
           V  V     +++ GI+ GD I+ VN   +  +   ++ E + +    L L V        
Sbjct: 39  VQEVAPNSPSQRGGIQDGDIIVKVNGRPLVDS--SELQEAVLT-ESPLLLEVRRGNDDLL 95

Query: 101 ISVSPEE 107
            S++PE 
Sbjct: 96  FSIAPEV 102

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A Length = 91

 Score = 46.7 bits (111), Expect = 3e-07
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 11/70 (15%)

Query: 49  VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIK-SGGDVLSLTV------- 100
           +  V    AA  AG++ GDRI+ V+   +        V L++ + G  L+L +       
Sbjct: 8   LENVQPNSAASXAGLQAGDRIVXVDGQPLT--QWVTFVMLVRDNPGXSLALEIERQGSPL 65

Query: 101 -ISVSPEEAE 109
            +++ PE   
Sbjct: 66  SLTLIPESXP 75

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A Length = 324

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 49  VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
           +  V+AGGAA  AG+ KG  +  V++  +  A         K+ G  ++LT  
Sbjct: 246 IVEVVAGGAAANAGVPKGVVVTKVDDRPINSADALVAAVRSKAPGATVALTFQ 298

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A Length = 436

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 12/53 (22%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 49  VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
           +  V+ G  A +AG++K D I+ VN   V      ++ +++ +   +++L ++
Sbjct: 367 IDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSI--AEMRKVLAAKPAIIALQIV 417

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A Length = 436

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 49  VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATH-KQVVELIKSGGDVLSLTVI 101
           VS VL G  + KAG++ GD I ++N   +      +  +   + G  V  L ++
Sbjct: 267 VSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKV-KLGLL 319

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A Length = 448

 Score = 49.6 bits (119), Expect = 8e-07
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 49  VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           V+ V  G  A + G++KGD I+  N   V+     ++ +++ S   VL+L +
Sbjct: 387 VNNVKTGTPAAQIGLKKGDVIIGANQQAVKNI--AELRKVLDSKPSVLALNI 436

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A Length = 448

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 49  VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATH-KQVVELIKSGGDVLSLTVI 101
           VS VL   +A KAGI+ GD I ++N   +      +  V  +  G  + +L ++
Sbjct: 290 VSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKL-TLGLL 342

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A Length = 451

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 49  VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
           V       A  +AGIR GD I++ N   V     K +  + +     L + V+
Sbjct: 390 VVGASENSAGWRAGIRPGDIIISANKKPVTDV--KSLQTIAQEKKKELLVQVL 440

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A Length = 451

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 49  VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATH-KQVVELIKSGGDVLSLTVI 101
           VS V     AE AG++ GD I  +N+  +  AT  K  + L++ G  V  + V 
Sbjct: 286 VSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLLRVGSTV-KIIVE 338

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 118

 Score = 45.6 bits (107), Expect = 2e-06
 Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 13/109 (11%)

Query: 10  REVQIAKSDTG-FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEK--AGIRKG 66
             + +  +     GF+V  + +            YA    V  V     +      I  G
Sbjct: 17  TLISMPATTECRRGFSVTVESA---------SSNYATTVQVKEVNRMHISPNNRNAIHPG 67

Query: 67  DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI-SVSPEEAERLEPP 114
           DRIL +N   V     ++V + IK     L L +     P+  ++  P 
Sbjct: 68  DRILEINGTPVRTLRVEEVEDAIKQTSQTLQLLIEHDPVPQRLDQSGPS 116

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 2e-06
 Identities = 35/257 (13%), Positives = 72/257 (28%), Gaps = 95/257 (36%)

Query: 122 QIDYTEKRSLPISIP----DYSYVNTEDESFVVF------NIYMAGRHLCSRRLTEQQLD 171
           +  Y  K  L +       ++   + +D    +       +I M+               
Sbjct: 13  EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD-------AVSGT- 64

Query: 172 SRRRGLEIYLEKVCAVRVIAESELMQEFLTDALDENGTNISSPVDIKILLPDREVITVSV 231
              R     L K        + E++Q+F+ + L  N   + SP  IK       ++T   
Sbjct: 65  --LRLFWTLLSK--------QEEMVQKFVEEVLRINYKFLMSP--IKTEQRQPSMMT--- 109

Query: 232 RKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQNYSTAS 291
                   +Y     +LY  +             +Y+  R           Y++      
Sbjct: 110 -------RMYIEQRDRLYNDNQV---------FAKYNVSRL--------QPYLK------ 139

Query: 292 ATCLCIRKWLFSAPLERSL----------------VANDDRVATFM----FWMAIDAVDR 331
                +R+ L      +++                V    +V   M    FW+ +     
Sbjct: 140 -----LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL----- 189

Query: 332 GQIRAEDRLYELKALQD 348
               + + +  L+ LQ 
Sbjct: 190 KNCNSPETV--LEMLQK 204

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 50/262 (19%), Positives = 84/262 (32%), Gaps = 68/262 (25%)

Query: 99  TVISVSPEEAERLEPPDDHSGYQQIDYTEKRSLPISIPDYSYVNTEDESFVVFNIYMAGR 158
           T+I  S      LEP +    + ++      S  I     S +  +     V  + +   
Sbjct: 357 TIIESS---LNVLEPAEYRKMFDRLSVFPP-SAHIPTILLSLIWFDVIKSDVMVV-VN-- 409

Query: 159 HLCSRRLTEQQLDSRRRGL-EIYLEKVCAVRVIAESELMQEFLTDALDENGTNISSPVDI 217
            L    L E+Q       +  IYLE    +    E  L +  +      +  NI    D 
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLE--NEYALHRSIV------DHYNIPKTFDS 461

Query: 218 KILLPDREVITVSVRKSATADEVYASAVPKLY-LQSPSSAAYFYLFEIV--EYSFERKLE 274
             L+P               D+ + S +   + L++        LF +V  ++ F   LE
Sbjct: 462 DDLIPPYL------------DQYFYSHIG--HHLKNIEHPERMTLFRMVFLDFRF---LE 504

Query: 275 AKEFPHHLYIQNYSTASATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQI 334
            K       I++ STA         W  S  +        + +    F+       +  I
Sbjct: 505 QK-------IRHDSTA---------WNASGSIL-------NTLQQLKFY-------KPYI 534

Query: 335 RAEDRLYE--LKALQDASRKHE 354
              D  YE  + A+ D   K E
Sbjct: 535 CDNDPKYERLVNAILDFLPKIE 556

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 8e-04
 Identities = 44/308 (14%), Positives = 88/308 (28%), Gaps = 104/308 (33%)

Query: 94  DVLSLTVISVSPEEAERL--EPPDDH--------------SGYQ-------QIDY----- 125
           DV  +    +S EE + +                         Q       +I+Y     
Sbjct: 37  DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96

Query: 126 ---TEKRSLPISIPDYSYVNTEDESF---VVFNIYMAGRHLCSRRLTE--QQLDSRRRGL 177
              TE+R  P S+    Y+   D  +    VF  Y   R     +L +   +L   R   
Sbjct: 97  PIKTEQRQ-P-SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL---RPAK 151

Query: 178 EIYLE------KVC-AVRVIAESELMQEFLTDALDENGTNISSPVDIKILLPDREVITVS 230
            + ++      K   A+ V    ++  +                        D ++  ++
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKM-----------------------DFKIFWLN 188

Query: 231 VRKSATADEV-------YASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLY 283
           ++   + + V            P    +S  S+        ++    R L++K + + L 
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248

Query: 284 I----QNYSTASA---TCLCIRKWLFSAPLERSLV-ANDDRVATFMFWMAIDAVDRGQIR 335
           +    QN    +A   +C             + L+     +V  F     + A     I 
Sbjct: 249 VLLNVQNAKAWNAFNLSC-------------KILLTTRFKQVTDF-----LSAATTTHIS 290

Query: 336 AEDRLYEL 343
            +     L
Sbjct: 291 LDHHSMTL 298

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A Length = 95

 Score = 44.6 bits (105), Expect = 3e-06
 Identities = 12/52 (23%), Positives = 23/52 (44%)

Query: 49  VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           V  + A   A +A I  G  + AV+ +        ++  + K G +  ++TV
Sbjct: 6   VGEIAANSIAAEAQIAPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTITV 57

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A Length = 318

 Score = 46.8 bits (112), Expect = 5e-06
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 13/83 (15%)

Query: 25  VRGQ-----VSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEG 79
           + G+      ++GG +  + G +      V+ V   G A  AGI+  D I++V+N     
Sbjct: 225 IGGREIAPLHAQGGGIDQLQGIV------VNEVSPDGPAANAGIQVNDLIISVDNKPAIS 278

Query: 80  ATH-KQVVELIKSGGDVLSLTVI 101
           A      V  I+ G  +  + V+
Sbjct: 279 ALETMDQVAEIRPGSVI-PVVVM 300

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans} Length = 94

 Score = 43.4 bits (103), Expect = 6e-06
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 5/55 (9%)

Query: 49  VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELI--KSGGDVLSLTVI 101
           V +VL    A    +  GDRI A++   +   T +Q+V  +  K  GD + +T I
Sbjct: 9   VMSVLPNMPA-AGRLEAGDRIAAIDGQPIN--TSEQIVSYVREKQAGDRVRVTFI 60

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis} Length = 91

 Score = 42.6 bits (101), Expect = 9e-06
 Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 5/55 (9%)

Query: 49  VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSG--GDVLSLTVI 101
            S+V+    A K  I  GD+I++ +  N +  + +++++ I S   GD ++L + 
Sbjct: 5   ASSVVENMPA-KGKIEVGDKIISADGKNYQ--SAEKLIDYISSKKAGDKVTLKIE 56

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343} Length = 403

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 16/124 (12%)

Query: 17  SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVN 76
              GF +               N   Y  L  +S V+ G  AE+AG+++G  I+ +N   
Sbjct: 72  PSYGFDY--------TLYKVLDNDTAYNAL--ISYVVPGSPAEEAGLQRGHWIMMMNGDY 121

Query: 77  VEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSGYQQIDYTEKRSLPISIP 136
           +      ++++     G    L +        E  E         +      RSL +  P
Sbjct: 122 ITKKVESELLQ-----GSTRQLQIGVYKEVVGEDGEVTGGVVPIGETTMPASRSL-VDKP 175

Query: 137 DYSY 140
            + +
Sbjct: 176 VHRF 179

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6 Length = 125

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 13/72 (18%)

Query: 49  VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSG--GDVLSLTV------ 100
           + +V+ G  A K  +  G  I ++N +             +K+   G+V+++T       
Sbjct: 29  IDSVVPGSPASKV-LTPGLVIESINGMPTS--NLTTYSAALKTISVGEVINITTDQGTFH 85

Query: 101 --ISVSPEEAER 110
                +P  + R
Sbjct: 86  LKTGRNPNNSSR 97

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A Length = 388

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 49  VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELI--KSGGDVLSLTVI 101
           V     GG AEKAG R GD I+ V+   V+G +   V +L+  ++   V  + + 
Sbjct: 103 VLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQV-EVVLH 156

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR} Length = 597

 Score = 45.0 bits (105), Expect = 3e-05
 Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 48  HVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
            V  V    +A  AG+  GD+I+A++++     + K+++E     GD +++   
Sbjct: 499 DVLNVYHDESAYHAGLSAGDKIIAIDHLQATEQSVKRILERYI-PGDTVTIHAF 551

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli} Length = 345

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 49  VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATH-KQVVELIKSGGDVLSLTVI 101
           VS VL G  + KAG++ GD I ++N   +      +  +   + G  V  L ++
Sbjct: 267 VSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKV-KLGLL 319

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A Length = 100

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 5/55 (9%)

Query: 49  VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELI--KSGGDVLSLTVI 101
           V +V     A    +  GD I  ++    + +   + ++ I  K  GD + +   
Sbjct: 11  VMSVKDDVPAADV-LHAGDLITEIDGNAFKSSQ--EFIDYIHSKKVGDTVKINYK 62

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae} Length = 134

 Score = 41.4 bits (98), Expect = 6e-05
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 49  VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
           V +V +   A    + K D I  V++  +  +T  Q      S GD + +T  
Sbjct: 61  VRSVQSNMPA-NGHLEKYDVITKVDDKEIASSTDLQSALYNHSIGDTIKITYY 112

>3p0c_A Nischarin; structural genomics, structural genomics consortium, SGC, PX signaling protein; 2.27A {Homo sapiens} Length = 130

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 163 RRLTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT-DALDENG 208
            + +   ++ R + LE+YL+K+ A        ++  FL     + NG
Sbjct: 84  GKNSRSLVEKREKDLEVYLQKLLAAFPGVTPRVLAHFLHFHFYEING 130

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5 Length = 105

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 49  VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVI 101
           VS        E  G++ GD  +A+N +++       +  L +S      +SLTV 
Sbjct: 41  VSPGKDPVLFESIGLQDGDMAVALNGLDLTDPN--VMNTLFQSMNEMTEMSLTVE 93

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} Length = 209

 Score = 40.8 bits (95), Expect = 3e-04
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 7/103 (6%)

Query: 1   MYSTQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEK 60
           +YS++    RE  +  S+   G  + G           N  ++    HV  V +   A  
Sbjct: 72  IYSSKTLELRETSVTPSNLWGGQGLLGVSIRFCSFDGANENVW----HVLEVESNSPAAL 127

Query: 61  AGIR-KGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVIS 102
           AG+R   D I+  + V  E      ++E        L L V +
Sbjct: 128 AGLRPHSDYIIGADTVMNESEDLFSLIE--THEAKPLKLYVYN 168

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} Length = 209

 Score = 40.1 bits (93), Expect = 4e-04
 Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 3/79 (3%)

Query: 48  HVSAVLAGGAAEKAGIR-KGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPE 106
           HV  V       +AG+    D I+++N   +          L  +    + + + S    
Sbjct: 19  HVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIYSSKTL 78

Query: 107 EAERLE--PPDDHSGYQQI 123
           E       P +   G   +
Sbjct: 79  ELRETSVTPSNLWGGQGLL 97

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5 Length = 87

 Score = 37.1 bits (86), Expect = 8e-04
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 49  VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVI 101
           VS        E  G++ GD  +A+N +++       +  L +S      +SLTV 
Sbjct: 23  VSPGKDPVLFESIGLQDGDMAVALNGLDLTDPN--VMNTLFQSMNEMTEMSLTVE 75

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	373
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	99.65
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	99.61
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	99.57
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	99.54
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	99.53
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	99.53
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	99.53
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	99.52
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	99.51
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	99.51
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.5
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	99.49
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	99.49
2ego_A	96	General receptor for phosphoinositides 1- associat	99.48
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	99.48
2fne_A	117	Multiple PDZ domain protein; structural protein, s	99.48
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	99.48
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	99.48
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	99.48
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	99.48
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	99.47
2awx_A	105	Synapse associated protein 97; membrane protein, s	99.47
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	99.46
2d90_A	102	PDZ domain containing protein 1; structural genomi	99.46
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	99.46
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	99.46
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	99.46
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	99.46
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	99.45
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	99.45
4e34_A	87	Golgi-associated PDZ and coiled-coil motif-contai	99.45
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	99.45
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	99.45
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	99.45
2opg_A	98	Multiple PDZ domain protein; structural protein, s	99.44
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	99.44
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	99.44
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	99.43
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	99.43
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	99.43
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	99.43
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	99.42
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	99.42
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	99.42
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	99.42
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	99.42
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	99.42
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	99.41
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	99.41
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	99.41
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	99.41
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	99.4
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	99.4
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	99.4
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	99.4
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	99.4
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	99.4
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	99.4
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	99.39
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	99.39
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	99.39
3khf_A	99	Microtubule-associated serine/threonine-protein ki	99.39
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	99.39
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	99.39
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	99.39
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	99.39
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	99.38
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	99.38
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	99.38
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	99.38
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	99.37
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	99.37
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	99.37
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	99.37
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	99.37
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	99.36
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	99.36
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	99.36
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	99.36
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	99.36
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	99.36
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	99.36
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	99.36
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	99.36
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	99.36
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	99.35
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	99.35
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	99.35
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	99.35
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	99.34
3sfj_A	104	TAX1-binding protein 3; PDZ:peptide complex, signa	99.34
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	99.34
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	99.34
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	99.34
4amh_A	106	Disks large homolog 1; permutation, protein foldin	99.33
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	99.33
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	99.33
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	99.33
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	99.33
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	99.33
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	99.32
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	99.32
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	99.32
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	99.32
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	99.32
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	99.31
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	99.31
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	99.31
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	99.31
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	99.3
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	99.3
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	99.3
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	99.29
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	99.29
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.29
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	99.29
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	99.28
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	99.28
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	99.28
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	99.27
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.27
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	99.27
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	99.27
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	99.27
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	99.26
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	99.26
3qik_A	101	Phosphatidylinositol 3,4,5-trisphosphate-dependen	99.26
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	99.26
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	99.25
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	99.25
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	99.25
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	99.24
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	99.24
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	99.23
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	99.22
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	99.22
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	99.22
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	99.2
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	99.2
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	99.19
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	99.19
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	99.18
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	99.17
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	99.16
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	99.16
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	99.15
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	99.15
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	99.14
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	99.14
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	98.75
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	99.12
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	99.12
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	99.11
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	99.1
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	99.06
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	99.05
4eku_A	392	Protein-tyrosine kinase 2-beta; proline-rich tyros	99.02
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	99.02
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	99.01
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	99.01
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	99.0
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	99.0
1ef1_A	294	Moesin; membrane, FERM domain, tail domain, membra	99.0
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	99.0
4dxa_B	322	KREV interaction trapped protein 1; GTPase, FERM,	98.98
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	98.97
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	98.96
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	98.95
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	98.93
1h4r_A	314	Merlin; FERM, neurofibromatosis, NF2, structural p	98.93
3au4_A	555	Myosin-X; protein-protein complex, motor protein c	98.92
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	98.87
3qij_A	296	Protein 4.1; cytoskeleton, structural genomics, st	98.82
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	98.81
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	98.77
2al6_A	375	Focal adhesion kinase 1; transferase; 2.35A {Gallu	98.77
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	98.75
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	98.74
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	98.72
2kl1_A	94	YLBL protein; structure genomics, structural genom	98.7
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	98.67
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	98.66
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	98.66
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	98.65
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	98.63
3pvl_A	655	Myosin VIIA isoform 1; protein complex, novel fold	98.62
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	98.57
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	98.53
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	98.47
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	98.39
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	98.37
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	98.33
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	98.28
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	98.25
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	98.25
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	98.24
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	98.24
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	98.23
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	98.23
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	98.21
4fgm_A	597	Aminopeptidase N family protein; structural genomi	98.2
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	98.18
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	98.1
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	98.08
3k50_A	403	Putative S41 protease; structural genomics, joint	98.03
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	98.0
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	97.89
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	97.58
3lui_A	115	Sorting nexin-17, SNX17; PX domain, endosome, phos	97.37
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	97.36
1k32_A	1045	Tricorn protease; protein degradation, substrate g	97.15
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	97.08
2wwe_A	127	Phosphoinositide-3-kinase, class 2, gamma polypept	96.9
1wgr_A	100	Growth factor receptor-bound protein 7; RA domain,	96.76
1mix_A	206	Talin; focal adhesion, integrin binding, FERM doma	96.7
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	96.19
4f7g_A	222	Talin-1; alpha-helix bundle, integrin activation,	96.02
3iq2_A	138	Sorting nexin-7; SNX7, PHOX, protein signalling, S	94.16
4az9_A	129	Sorting nexin-24; protein transport; 1.75A {Homo s	92.88
3p0c_A	130	Nischarin; structural genomics, structural genomic	92.59
2csk_A	146	Sorting nexin 12; SNX12, PX domain, structural gen	92.19
2i4k_A	128	Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 al	92.04
1ocs_A	162	Sorting nexin GRD19; sorting protein, PX-domain, y	91.83
4gmv_A	281	RAS-associated and pleckstrin homology domains-CO	91.61
1xte_A	154	Serine/threonine-protein kinase SGK3; CISK, PX dom	91.17
1kmd_A	117	VAM7P, vacuolar morphogenesis protein VAM7; PX dom	90.7
1wxa_A	116	Afadin, AF-6 protein; RAS-binding domain, ubiquiti	90.16
3ddc_B	163	RAS association domain-containing family protein;	89.41
1h6h_A	143	Neutrophil cytosol factor 4; PX domain; HET: PIB;	87.81
2ett_A	128	Sorting nexin-22; PX domain, BC019655, SNX22_human	85.7
2ar5_A	121	Phosphoinositide 3-kinase; PX domain, transferase;	84.79
3dyt_A	366	Sorting nexin-9; 3-helix bundle, BAR domain, PX do	83.91
2iwl_X	140	Phosphatidylinositol-4-phosphate 3-kinase C2 domai	83.27
3hpc_X	161	SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosph	81.05
4akv_A	386	Sorting nexin-33; transport protein, organelle bio	80.75
2v14_A	134	Kinesin-like motor protein C20ORF23; plus-END kine	80.16

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=99.61  E-value=6.4e-15  Score=113.47  Aligned_cols=78  Identities=22%  Similarity=0.508  Sum_probs=71.5

Q ss_pred             CCCcEEEEEEcCCC-CccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHH
Q psy2827           6 QTGPREVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQ   84 (373)
Q Consensus         6 ~~~~r~v~l~r~~~-g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~   84 (373)
                      +..||+|+|.|++. +|||+++++                   .|..+.++|||+++||++||+|++|||+++.++++++
T Consensus         2 ~~~~r~v~l~k~~~g~~Gf~i~~g-------------------~I~~v~~gspA~~aGl~~GD~Il~VNG~~v~~~~~~e   62 (82)
T 1r6j_A            2 AMDPRTITMHKDSTGHVGFIFKNG-------------------KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQ   62 (82)
T ss_dssp             TTCCEEEEEECCTTSCCCEEEETT-------------------EEEEECTTSHHHHHTCCSSEEEEEETTEECTTCCHHH
T ss_pred             CCceEEEEEEECCCCCeEEEEECC-------------------EEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHH
Confidence            46789999999986 699999865                   4789999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCeEEEEEEe
Q psy2827          85 VVELIKSGGDVLSLTVIS  102 (373)
Q Consensus        85 ~~~~i~~~g~~v~l~V~r  102 (373)
                      ++++|++++..++|+|..
T Consensus        63 vv~llr~~g~~V~L~v~p   80 (82)
T 1r6j_A           63 IADILSTSGTVVTITIMP   80 (82)
T ss_dssp             HHHHHHHSCSEEEEEEEE
T ss_pred             HHHHHhcCCCEEEEEEEe
Confidence            999999989999999864

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=99.57  E-value=3.9e-14  Score=110.65  Aligned_cols=86  Identities=36%  Similarity=0.558  Sum_probs=76.5

Q ss_pred             CCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHH
Q psy2827           5 QQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQ   84 (373)
Q Consensus         5 ~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~   84 (373)
                      +.++||+|+|.|+..+|||++.+...             .++++|..|.++|||+++||++||+|++|||.++.++++.+
T Consensus         1 s~~~~r~v~l~k~~~g~G~~~~~~~~-------------~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~   67 (90)
T 2he4_A            1 SMLRPRLCHLRKGPQGYGFNLHSDKS-------------RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAE   67 (90)
T ss_dssp             CTTCCEEEEEECBTTBCCEEEEECSS-------------SSSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTSCHHH
T ss_pred             CCCCcEEEEEEECCCCccEEEEccCC-------------CCCEEEEEECCCChHHHCCCCCCCEEEEECCEECCCCCHHH
Confidence            35689999999999999999988632             23568999999999999999999999999999999988899


Q ss_pred             HHHHHHhCCCeEEEEEEec
Q psy2827          85 VVELIKSGGDVLSLTVISV  103 (373)
Q Consensus        85 ~~~~i~~~g~~v~l~V~r~  103 (373)
                      +..+++..+..+.++|.|.
T Consensus        68 ~~~~l~~~~~~v~l~v~r~   86 (90)
T 2he4_A           68 VVASIKAREDEARLLVVGP   86 (90)
T ss_dssp             HHHHHTTSSSEEEEEEECC
T ss_pred             HHHHHHcCCCcEEEEEEcc
Confidence            9999988889999999874

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}

Probab=99.54  E-value=6.9e-14  Score=117.50  Aligned_cols=104  Identities=34%  Similarity=0.497  Sum_probs=82.7

Q ss_pred             CCCCCCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCC
Q psy2827           2 YSTQQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGA   80 (373)
Q Consensus         2 ~~~~~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~   80 (373)
                      +|+...++|+|+|.|.+ .+|||+|.++..............+.++++|..|.++|||+++||++||+|++|||+++.++
T Consensus        21 ~s~~~~~~r~v~l~r~~~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~  100 (132)
T 3l4f_D           21 GSDYIIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKV  100 (132)
T ss_dssp             SCCCCCCCCEEEEECCTTSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTTSGGGGGTCCTTCEEEEESSSBCTTS
T ss_pred             CCCcCCCCEEEEEEECCCCcEeEEEeccCCCCccccccccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCC
Confidence            35566789999999965 78999999985432111001112234467999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhCCCeEEEEEEecCc
Q psy2827          81 THKQVVELIKSGGDVLSLTVISVSP  105 (373)
Q Consensus        81 s~~~~~~~i~~~g~~v~l~V~r~~~  105 (373)
                      ++.++...++..+..+.++|.+...
T Consensus       101 ~~~~~~~~l~~~g~~v~l~v~~~~~  125 (132)
T 3l4f_D          101 GHRQVVNMIRQGGNTLMVKVVMVTR  125 (132)
T ss_dssp             CHHHHHHHHHHTTTEEEEEEECCCC
T ss_pred             CHHHHHHHHHcCCCEEEEEEEECCC
Confidence            9999999999988999999987644

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A

Probab=99.53  E-value=1.8e-14  Score=112.82  Aligned_cols=86  Identities=31%  Similarity=0.517  Sum_probs=72.7

Q ss_pred             CCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHH
Q psy2827           6 QTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQV   85 (373)
Q Consensus         6 ~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~   85 (373)
                      +++||+|+|.|++.+|||++.+...             .++++|..|.++|||+++||++||+|++|||+++.+++++++
T Consensus         1 ~~~pr~v~l~k~~~~~G~~l~~~~~-------------~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~   67 (91)
T 2vsp_A            1 SMKPKLCRLAKGENGYGFHLNAIRG-------------LPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKV   67 (91)
T ss_dssp             -CCEEEEEEECBTTBTSCCCBCCTT-------------CSCCBC-CCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHH
T ss_pred             CCCcEEEEEEeCCCcccEEEEeccC-------------CCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHH
Confidence            4689999999999999999976532             123479999999999999999999999999999997779999


Q ss_pred             HHHHHhCCCeEEEEEEecC
Q psy2827          86 VELIKSGGDVLSLTVISVS  104 (373)
Q Consensus        86 ~~~i~~~g~~v~l~V~r~~  104 (373)
                      ..+++..++.+.++|.|..
T Consensus        68 ~~~l~~~g~~v~l~v~r~~   86 (91)
T 2vsp_A           68 VDRIQSSGKNVTLLVCGKK   86 (91)
T ss_dssp             HHHHTTSCSEEEEEEEC--
T ss_pred             HHHHHcCCCEEEEEEEeCC
Confidence            9999887899999998743

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*

Probab=99.53  E-value=7.8e-14  Score=109.88  Aligned_cols=86  Identities=36%  Similarity=0.580  Sum_probs=75.2

Q ss_pred             CCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHH
Q psy2827           5 QQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQ   84 (373)
Q Consensus         5 ~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~   84 (373)
                      +|+.||+++|.|+..+|||++.+....             .+++|..|.++|||+++||++||+|++|||.++.++++++
T Consensus         2 sp~~~r~v~l~~~~~~~G~~l~~~~~~-------------~~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~   68 (95)
T 3r68_A            2 SPHQPRVVVIKKGSNGYGFYLRAGPEQ-------------KGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDG   68 (95)
T ss_dssp             CCCCCEEEEEECBTTBCSCEEEEC--C-------------CSEEEECCCTTSHHHHHTCCTTEEEEEETTEECTTCCHHH
T ss_pred             CCCCcEEEEEecCCCcccEEEEecCCC-------------CCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHH
Confidence            578999999999999999999876321             2458999999999999999999999999999999988899


Q ss_pred             HHHHHHhCCCeEEEEEEec
Q psy2827          85 VVELIKSGGDVLSLTVISV  103 (373)
Q Consensus        85 ~~~~i~~~g~~v~l~V~r~  103 (373)
                      +..+++..+..+.+++.+.
T Consensus        69 ~~~~l~~~~~~~~~~~~r~   87 (95)
T 3r68_A           69 VVEMIRKGGDQTTLLVLDK   87 (95)
T ss_dssp             HHHHHHTTTTEEEEEEEEC
T ss_pred             HHHHHHhCCCeEEEEEECC
Confidence            9999999778888887763

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=99.53  E-value=1.2e-13  Score=109.13  Aligned_cols=88  Identities=36%  Similarity=0.532  Sum_probs=76.4

Q ss_pred             CCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHH
Q psy2827           7 TGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVV   86 (373)
Q Consensus         7 ~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~   86 (373)
                      ++||+|+|.|++.+|||++.+..+.+          ...+++|..|.++|||+++||++||+|++|||.++.++++.++.
T Consensus         2 ~~~r~v~l~k~~~~~G~~l~~~~~~~----------~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~   71 (96)
T 2v90_A            2 MKPRCLHLEKGPQGFGFLLREEKGLD----------GRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETV   71 (96)
T ss_dssp             CCCEEEEEECBTTBSCEEEEEEECTT----------SCEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHH
T ss_pred             CCCEEEEEEeCCCcccEEEEeccCCC----------CCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHH
Confidence            47899999999999999998753211          12346899999999999999999999999999999999999999


Q ss_pred             HHHHhCCCeEEEEEEecC
Q psy2827          87 ELIKSGGDVLSLTVISVS  104 (373)
Q Consensus        87 ~~i~~~g~~v~l~V~r~~  104 (373)
                      ..++..++.+.++|.|..
T Consensus        72 ~~l~~~g~~v~l~v~r~~   89 (96)
T 2v90_A           72 SRIQGQGSCVSLTVVDPE   89 (96)
T ss_dssp             HHHHTTTTEEEEEEECCC
T ss_pred             HHHHcCCCEEEEEEECCC
Confidence            999988899999998854

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A

Probab=99.52  E-value=1.6e-13  Score=109.97  Aligned_cols=88  Identities=34%  Similarity=0.591  Sum_probs=78.2

Q ss_pred             CCCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCC
Q psy2827           3 STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGAT   81 (373)
Q Consensus         3 ~~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s   81 (373)
                      .+.+..+++|+|.|++.+|||++.++.+             .++++|..|.++|||+++| |++||+|++|||.++.+++
T Consensus         6 ~~~~~~~~~v~l~k~~~glG~~~~~~~~-------------~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~   72 (104)
T 3i4w_A            6 EDIPREPRRIVIHRGSTGLGFNIVGGEX-------------GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNAS   72 (104)
T ss_dssp             CCCCSSCEEEEEECBTTBTSEEEEECC--------------CCCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCC
T ss_pred             CCCCCccEEEEEEeCCCccCEEEECCCC-------------CCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCC
Confidence            4678899999999999999999988632             2356899999999999999 9999999999999999888


Q ss_pred             HHHHHHHHHhCCCeEEEEEEec
Q psy2827          82 HKQVVELIKSGGDVLSLTVISV  103 (373)
Q Consensus        82 ~~~~~~~i~~~g~~v~l~V~r~  103 (373)
                      +.++...++..++.+.++|.|.
T Consensus        73 ~~~~~~~~~~~~~~v~l~v~r~   94 (104)
T 3i4w_A           73 HEQAAIALKNAGQTVTIIAQYK   94 (104)
T ss_dssp             HHHHHHHHHTSCSEEEEEEEEC
T ss_pred             HHHHHHHHHcCCCeEEEEEEEC
Confidence            9999999988889999999874

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1

Probab=99.51  E-value=1.7e-13  Score=107.35  Aligned_cols=84  Identities=31%  Similarity=0.482  Sum_probs=73.4

Q ss_pred             CCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHH
Q psy2827           7 TGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVV   86 (373)
Q Consensus         7 ~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~   86 (373)
                      .++|+|++.|+..+|||++.+.               .+ ++|..|.++|||+++||++||+|++|||.++.++++.++.
T Consensus         2 ~~~r~v~l~~~~~g~G~~l~~~---------------~~-~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~   65 (91)
T 2f5y_A            2 MRYRQITIPRGKDGFGFTICCD---------------SP-VRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELA   65 (91)
T ss_dssp             CEEEEEEEECBTTBTSEEEECS---------------SS-CEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHH
T ss_pred             CceEEEEEEeCCCCccEEEecC---------------CC-EEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHH
Confidence            4679999999999999999764               12 4799999999999999999999999999999988899999


Q ss_pred             HHHHhCCCeEEEEEEecCcc
Q psy2827          87 ELIKSGGDVLSLTVISVSPE  106 (373)
Q Consensus        87 ~~i~~~g~~v~l~V~r~~~~  106 (373)
                      ..++..+..+.++|.|..+.
T Consensus        66 ~~l~~~~~~v~l~v~R~~~~   85 (91)
T 2f5y_A           66 HEIRSCPSEIILLVWRMVPQ   85 (91)
T ss_dssp             HHHHTCSSEEEEEEEECC--
T ss_pred             HHHHcCCCeEEEEEEeCCCC
Confidence            99988778899999986654

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A

Probab=99.51  E-value=2.7e-13  Score=105.96  Aligned_cols=83  Identities=37%  Similarity=0.550  Sum_probs=71.4

Q ss_pred             CCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHH
Q psy2827           7 TGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVV   86 (373)
Q Consensus         7 ~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~   86 (373)
                      ..||+|+|.|++.+|||++.++.+             .++++|..|.++|||+++||++||+|++|||+++.++++.++.
T Consensus         2 ~~~r~v~l~r~~~g~G~~~~~~~~-------------~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~   68 (91)
T 1g9o_A            2 MLPRLCCLEKGPNGYGFHLHGEKG-------------KLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVV   68 (91)
T ss_dssp             CCCEEEEEECBTTBCCEEEEECTT-------------CSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHH
T ss_pred             CccEEEEEEeCCCcccEEEEecCC-------------CCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHH
Confidence            468999999999999999988632             1345899999999999999999999999999999999999999


Q ss_pred             HHHHhCCCeEEEEEEe
Q psy2827          87 ELIKSGGDVLSLTVIS  102 (373)
Q Consensus        87 ~~i~~~g~~v~l~V~r  102 (373)
                      ..++..+..+.+.+.+
T Consensus        69 ~~l~~~~~~~~~~~~~   84 (91)
T 1g9o_A           69 SRIRAALNAVRLLVVD   84 (91)
T ss_dssp             HHHHTCSSEEEEEEEC
T ss_pred             HHHHcCCCcEEEEEEc
Confidence            9999865666555543

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A

Probab=99.50  E-value=1.5e-13  Score=113.57  Aligned_cols=94  Identities=27%  Similarity=0.411  Sum_probs=73.0

Q ss_pred             CCCCCCcEEEEEEcCCC-CccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHc-CCCCCCEEEEECCEEcCCC
Q psy2827           3 STQQTGPREVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA-GIRKGDRILAVNNVNVEGA   80 (373)
Q Consensus         3 ~~~~~~~r~v~l~r~~~-g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~a-GL~~GD~Il~InG~~v~~~   80 (373)
                      .+.+..+++|+|.|++. +|||++.++.+.+.         ...+++|..|.++|||+++ ||++||+|++|||+++.++
T Consensus        19 ~s~~~~~~~v~l~k~~~~~lGf~i~gg~~~~~---------~~~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~   89 (120)
T 2iwo_A           19 YFQSMGLRTVEMKKGPTDSLGISIAGGVGSPL---------GDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGM   89 (120)
T ss_dssp             ------CEEEEEEC----CCCEEEEEEEEETT---------EEEEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTC
T ss_pred             CCCCCCcEEEEEEcCCCCCCCEEEecccCCCC---------CCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCC
Confidence            45677889999999985 99999998743210         1224589999999999999 8999999999999999999


Q ss_pred             CHHHHHHHHHhCCCeEEEEEEecCc
Q psy2827          81 THKQVVELIKSGGDVLSLTVISVSP  105 (373)
Q Consensus        81 s~~~~~~~i~~~g~~v~l~V~r~~~  105 (373)
                      ++.++..+++..+..++|+|.|...
T Consensus        90 ~~~~~~~~l~~~~~~v~l~v~r~g~  114 (120)
T 2iwo_A           90 THTQAVNLLKNASGSIEMQVVAGGD  114 (120)
T ss_dssp             BHHHHHHHHHHCCSEEEEEEECCTT
T ss_pred             CHHHHHHHHHcCCCeEEEEEEECCc
Confidence            9999999999988889999988543

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=2.8e-13  Score=106.24  Aligned_cols=87  Identities=36%  Similarity=0.634  Sum_probs=74.8

Q ss_pred             CCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHH
Q psy2827           5 QQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHK   83 (373)
Q Consensus         5 ~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~   83 (373)
                      +...+|+|+|.|+..+|||++.++.+.            ..+++|..|.++|||+++| |++||+|++|||+++.++++.
T Consensus         2 ~~~~~r~v~l~k~~~glG~~l~~~~~~------------~~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~   69 (93)
T 2dkr_A            2 SSGSSGVVELPKTDEGLGFNIMGGKEQ------------NSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHE   69 (93)
T ss_dssp             CSSCSCEEEEECCTTCCCEEEECSSSS------------SCCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHH
T ss_pred             CCCCCEEEEEEeCCCCccEEEecccCC------------CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHH
Confidence            356789999999999999999876322            1235899999999999996 999999999999999988899


Q ss_pred             HHHHHHHhCCCeEEEEEEec
Q psy2827          84 QVVELIKSGGDVLSLTVISV  103 (373)
Q Consensus        84 ~~~~~i~~~g~~v~l~V~r~  103 (373)
                      ++...++..+..+.++|.|.
T Consensus        70 ~~~~~~~~~~~~v~l~v~r~   89 (93)
T 2dkr_A           70 KAVELLKAAQGSVKLVVRSG   89 (93)
T ss_dssp             HHHHHHHHCCSEEEEEECCC
T ss_pred             HHHHHHHhCCCcEEEEEEeC
Confidence            99999988777889988764

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A

Probab=99.49  E-value=6.3e-13  Score=104.91  Aligned_cols=91  Identities=43%  Similarity=0.569  Sum_probs=77.4

Q ss_pred             CCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHH
Q psy2827           5 QQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHK   83 (373)
Q Consensus         5 ~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~   83 (373)
                      .+..+++|+|.|++.+|||++.++.+...         ...+++|..|.++|||+++| |++||+|++|||+++.++++.
T Consensus         2 ~~g~~~~v~l~k~~~~lG~~i~~g~~~~~---------~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~   72 (96)
T 1d5g_A            2 KPGDIFEVELAKNDNSLGISVTGGVNTSV---------RHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHK   72 (96)
T ss_dssp             CTTCEEEEEEECSSSSCCEEEECCSSSCS---------SSSCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHH
T ss_pred             CCCCEEEEEEEeCCCCCCEEEECCCCCCC---------CcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHH
Confidence            46678999999999999999998643211         12345899999999999999 999999999999999988899


Q ss_pred             HHHHHHHhCCCeEEEEEEecC
Q psy2827          84 QVVELIKSGGDVLSLTVISVS  104 (373)
Q Consensus        84 ~~~~~i~~~g~~v~l~V~r~~  104 (373)
                      ++...++..++.+.++|.|..
T Consensus        73 ~~~~~l~~~g~~v~l~v~R~~   93 (96)
T 1d5g_A           73 QAVETLRNTGQVVHLLLEKGQ   93 (96)
T ss_dssp             HHHHHHHSCCSEEEEEEECCS
T ss_pred             HHHHHHHcCCCeEEEEEEcCC
Confidence            999999888899999998743

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A

Probab=99.48  E-value=4.2e-13  Score=106.09  Aligned_cols=92  Identities=29%  Similarity=0.496  Sum_probs=73.4

Q ss_pred             CCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHH
Q psy2827           6 QTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQ   84 (373)
Q Consensus         6 ~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~   84 (373)
                      ++.+|+|+|.|++ .+|||++.+....     .-....+..+++|..|.++|||+++||++||+|++|||+++.++++++
T Consensus         2 ~~~~r~v~l~k~~~~~~Gf~l~~~g~~-----~~~~~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~   76 (96)
T 2ego_A            2 SQQRKVLTLEKGDNQTFGFEIQTYGLH-----HREEQRVEMVTFVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHRE   76 (96)
T ss_dssp             CCCEEEEEEECCTTCCCSEEEEEEEC------------CCEEEEEEEECTTCHHHHTTCCTTCEEEEETTEECTTCCHHH
T ss_pred             CCccEEEEEEeCCCCCccEEEEecccc-----ccCCCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHH
Confidence            4678999999998 5899999872100     000111233568999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCeEEEEEEe
Q psy2827          85 VVELIKSGGDVLSLTVIS  102 (373)
Q Consensus        85 ~~~~i~~~g~~v~l~V~r  102 (373)
                      +..+++..+..+.++|.+
T Consensus        77 ~~~~l~~~~~~v~l~v~~   94 (96)
T 2ego_A           77 IVDIIKASGNVLRLETLY   94 (96)
T ss_dssp             HHHHHHHTTTEEEEEEEC
T ss_pred             HHHHHHhCCCeEEEEEEE
Confidence            999999877789998865

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.48  E-value=3.5e-13  Score=109.05  Aligned_cols=93  Identities=22%  Similarity=0.370  Sum_probs=77.2

Q ss_pred             CCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCH
Q psy2827           4 TQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATH   82 (373)
Q Consensus         4 ~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~   82 (373)
                      .....+++|+|.|++.+|||++.++.+..        .+..++++|..|.++|||+++| |++||+|++|||+++.+++|
T Consensus        11 ~~~~~~~~v~l~k~~~glG~~i~~~~~~~--------~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~   82 (108)
T 2d92_A           11 LWSPEVKIVELVKDCKGLGFSILDYQDPL--------DPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSL   82 (108)
T ss_dssp             SSCSSCEEEEEEECSSCCSEEEEEEECSS--------CTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCH
T ss_pred             ccCCceEEEEEEECCCccCEEEecccccC--------CCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCH
Confidence            34456799999999999999999864310        0112456899999999999999 99999999999999999999


Q ss_pred             HHHHHHHHh-CCCeEEEEEEecC
Q psy2827          83 KQVVELIKS-GGDVLSLTVISVS  104 (373)
Q Consensus        83 ~~~~~~i~~-~g~~v~l~V~r~~  104 (373)
                      +++..+++. .+..+.|+|.|..
T Consensus        83 ~~~~~~l~~~~~~~v~l~v~R~~  105 (108)
T 2d92_A           83 AEAVEILKAVPPGLVHLGICSGP  105 (108)
T ss_dssp             HHHHHHHHHSCSEEEEEEEECCC
T ss_pred             HHHHHHHHhCCCCeEEEEEEcCC
Confidence            999999998 5678999998743

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1

Probab=99.48  E-value=2e-13  Score=112.25  Aligned_cols=91  Identities=29%  Similarity=0.495  Sum_probs=76.3

Q ss_pred             CCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHH
Q psy2827           5 QQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHK   83 (373)
Q Consensus         5 ~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~   83 (373)
                      ..+.+++|+|.|++.+|||++.++.+.+.         ...+++|..|.++|||+++| |++||+|++|||.++.++++.
T Consensus        22 ~~~~~~~v~L~k~~~glGf~l~~g~~~~~---------~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~   92 (117)
T 2fne_A           22 SMPQCKSITLERGPDGLGFSIVGGYGSPH---------GDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHE   92 (117)
T ss_dssp             -CCEEEEEEECCBTTBTSEEEEEEEEETT---------EEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHH
T ss_pred             CCCccEEEEEEeCCCcccEEEecccCCCC---------CCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHH
Confidence            45677899999999999999998743210         01245899999999999999 999999999999999988899


Q ss_pred             HHHHHHHhCCCeEEEEEEecC
Q psy2827          84 QVVELIKSGGDVLSLTVISVS  104 (373)
Q Consensus        84 ~~~~~i~~~g~~v~l~V~r~~  104 (373)
                      ++...++..+..+.++|.|..
T Consensus        93 ~~~~~l~~~~~~v~l~v~R~g  113 (117)
T 2fne_A           93 EAVAILKRTKGTVTLMVLSSD  113 (117)
T ss_dssp             HHHHHHHHCCSSEEEEEEECS
T ss_pred             HHHHHHHcCCCeEEEEEEeCC
Confidence            999999987677999998754

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.48  E-value=6e-13  Score=107.36  Aligned_cols=99  Identities=23%  Similarity=0.348  Sum_probs=79.9

Q ss_pred             CCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHc-CCCCCCEEEEECCEEcCCCCH
Q psy2827           4 TQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA-GIRKGDRILAVNNVNVEGATH   82 (373)
Q Consensus         4 ~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~a-GL~~GD~Il~InG~~v~~~s~   82 (373)
                      .....+++|+|.|+..+|||++.++.+..+.    .......+++|..|.++|||+++ ||++||+|++|||+++.++++
T Consensus         4 ~~~~~~~~v~l~k~~~~lG~~i~g~~~~~~~----~~~~~~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~   79 (107)
T 1uhp_A            4 GSSGKSLTLVLHRDSGSLGFNIIGGRPSVDN----HDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATH   79 (107)
T ss_dssp             CCSSEEEEEEECCSSSCCSEEEECCCSCCCC----TTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCH
T ss_pred             CcCcEEEEEEEEeCCCccCEEEEcCCCCccc----ccccCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            3456789999999989999999987432110    00111345689999999999999 899999999999999999999


Q ss_pred             HHHHHHHHhCCCeEEEEEEecCcc
Q psy2827          83 KQVVELIKSGGDVLSLTVISVSPE  106 (373)
Q Consensus        83 ~~~~~~i~~~g~~v~l~V~r~~~~  106 (373)
                      .++...++..++.+.++|.|..+.
T Consensus        80 ~~~~~~~~~~~~~v~l~v~R~~~~  103 (107)
T 1uhp_A           80 DQAVEAFKTAKEPIVVQVLRRTSG  103 (107)
T ss_dssp             HHHHHHHHHCCSSEEEEEEECCSS
T ss_pred             HHHHHHHHcCCCcEEEEEEeCCCC
Confidence            999999998888999999886553

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.48  E-value=6.4e-13  Score=103.80  Aligned_cols=87  Identities=26%  Similarity=0.369  Sum_probs=75.2

Q ss_pred             CCCCCCcEEEEEEcCC--CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCC
Q psy2827           3 STQQTGPREVQIAKSD--TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGA   80 (373)
Q Consensus         3 ~~~~~~~r~v~l~r~~--~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~   80 (373)
                      ||.|...++|++.|.+  .+|||++.++..             ..+++|..|.++|||+++||++||+|++|||+++.++
T Consensus         1 ~p~~~~~~~v~l~k~~~~~~~G~~~~~~~~-------------~~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~   67 (91)
T 1m5z_A            1 SPTPVELHKVTLYKDSGMEDFGFSVADGLL-------------EKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDF   67 (91)
T ss_dssp             CCSCCEEEEEEEECCTTCSSSSEEEEECTT-------------SSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTC
T ss_pred             CCCCcceEEEEEEECCCCCCccEEEEeccC-------------CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCC
Confidence            5677888999999976  479999988632             1346899999999999999999999999999999998


Q ss_pred             CHHHHHHHHHhCCCeEEEEEEe
Q psy2827          81 THKQVVELIKSGGDVLSLTVIS  102 (373)
Q Consensus        81 s~~~~~~~i~~~g~~v~l~V~r  102 (373)
                      ++.++...++..++.+.++|.|
T Consensus        68 ~~~~~~~~~~~~g~~v~l~v~R   89 (91)
T 1m5z_A           68 DCCLVVPLIAESGNKLDLVISR   89 (91)
T ss_dssp             CHHHHHHHHHTSTTEEEEEEEE
T ss_pred             CHHHHHHHHHcCCCEEEEEEEe
Confidence            8888888888888899999876

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A

Probab=99.48  E-value=3.8e-13  Score=107.26  Aligned_cols=93  Identities=27%  Similarity=0.431  Sum_probs=77.7

Q ss_pred             CCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHH
Q psy2827           6 QTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQ   84 (373)
Q Consensus         6 ~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~   84 (373)
                      ++.+++|+|.|++.+|||++.++.+.+.       .+...+++|..|.++|||+++| |++||+|++|||+++.++++.+
T Consensus         5 ~~~~~~v~l~~~~~~lG~~l~~g~~~~~-------~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~   77 (101)
T 2jik_A            5 LVTEEEINLTRGPSGLGFNIVGGTDQQY-------VSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQD   77 (101)
T ss_dssp             GEEEEEEEEECCTTCCCEEEEECTTSCS-------BTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHH
T ss_pred             CCccEEEEEEeCCCCCCEEEeccccCCC-------ccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHH
Confidence            4567899999999999999998744211       0012356899999999999999 9999999999999999988999


Q ss_pred             HHHHHHhCCCeEEEEEEecCc
Q psy2827          85 VVELIKSGGDVLSLTVISVSP  105 (373)
Q Consensus        85 ~~~~i~~~g~~v~l~V~r~~~  105 (373)
                      +...++..++.+.++|.|..+
T Consensus        78 ~~~~~~~~g~~v~l~v~R~~~   98 (101)
T 2jik_A           78 AVDLFRNAGYAVSLRVQHRLE   98 (101)
T ss_dssp             HHHHHHTCCSEEEEEEEEESC
T ss_pred             HHHHHHhCCCeEEEEEEeCCC
Confidence            999998888899999987543

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A

Probab=99.48  E-value=5.1e-13  Score=104.21  Aligned_cols=86  Identities=29%  Similarity=0.456  Sum_probs=74.3

Q ss_pred             CCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHc-CCCCCCEEEEECCEEcCCCCHH
Q psy2827           6 QTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA-GIRKGDRILAVNNVNVEGATHK   83 (373)
Q Consensus         6 ~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~a-GL~~GD~Il~InG~~v~~~s~~   83 (373)
                      ...+++|++.|.+ .+|||++.++.+.            ..+++|..|.++|||+++ ||++||+|++|||+++.++++.
T Consensus         2 ~~~~~~v~l~k~~~~~lG~~i~~~~~~------------~~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~   69 (90)
T 1qav_A            2 SLQRRRVTVRKADAGGLGISIKGGREN------------KMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHD   69 (90)
T ss_dssp             CSSCEEEEEECCTTTCCCEEEEEEGGG------------TEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHH
T ss_pred             CCccEEEEEEeCCCCCcCEEEEcccCC------------CCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHH
Confidence            3578999999964 7899999886331            134589999999999999 8999999999999999999999


Q ss_pred             HHHHHHHhCCCeEEEEEEec
Q psy2827          84 QVVELIKSGGDVLSLTVISV  103 (373)
Q Consensus        84 ~~~~~i~~~g~~v~l~V~r~  103 (373)
                      ++...++..+..+.++|.|.
T Consensus        70 ~~~~~~~~~~~~v~l~v~r~   89 (90)
T 1qav_A           70 EAVQALKKTGKEVVLEVKYM   89 (90)
T ss_dssp             HHHHHHHTCCSEEEEEEEEC
T ss_pred             HHHHHHHhCCCeEEEEEEEe
Confidence            99999998888999998764

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}

Probab=99.47  E-value=3.5e-13  Score=110.99  Aligned_cols=91  Identities=25%  Similarity=0.403  Sum_probs=77.2

Q ss_pred             CCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHH
Q psy2827           6 QTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHK   83 (373)
Q Consensus         6 ~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~   83 (373)
                      +..+++|++.|++ .+|||++.++.+..         ....+++|..|.++|||+++| |++||+|++|||+++.++++.
T Consensus        22 ~~~~~~v~l~k~~~~~lGf~i~gg~~~~---------~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~   92 (118)
T 3b76_A           22 SMHEKVVNIQKDPGESLGMTVAGGASHR---------EWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRS   92 (118)
T ss_dssp             EEEEEEEEEECCTTCCCCEEEEECSCST---------TCCCCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHH
T ss_pred             CCCcEEEEEEeCCCCccCEEEecCCCCC---------CCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHH
Confidence            4567889999986 78999999874321         113456899999999999999 999999999999999988899


Q ss_pred             HHHHHHHhCCCeEEEEEEecCc
Q psy2827          84 QVVELIKSGGDVLSLTVISVSP  105 (373)
Q Consensus        84 ~~~~~i~~~g~~v~l~V~r~~~  105 (373)
                      ++..+++..+..+.|+|.|..+
T Consensus        93 ~~~~~l~~~~~~v~L~v~R~~~  114 (118)
T 3b76_A           93 EAVALLKRTSSSIVLKALEVKE  114 (118)
T ss_dssp             HHHHHHHSCCSEEEEEEEEEEE
T ss_pred             HHHHHHHcCCCeEEEEEEECCC
Confidence            9999999988999999988543

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=99.47  E-value=7.9e-13  Score=106.26  Aligned_cols=92  Identities=32%  Similarity=0.500  Sum_probs=76.8

Q ss_pred             CCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHH
Q psy2827           7 TGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQV   85 (373)
Q Consensus         7 ~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~   85 (373)
                      .+.++|+|.|++.+|||++.++.+.+..       +...+++|..|.++|||+++| |++||+|++|||+++.+.++.++
T Consensus         2 e~~~~v~l~k~~~glG~~i~gg~~~~~~-------~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~   74 (105)
T 2awx_A            2 EKIMEIKLIKGPKGLGFSIAGGVGNQHI-------PGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEA   74 (105)
T ss_dssp             -CEEEEEEECBTTBSSEEEEECBTSCSB-------TTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHH
T ss_pred             CeEEEEEEEECCCCCCEEEeCccCCCCC-------CCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHH
Confidence            3567899999999999999987543210       112356899999999999999 99999999999999998889999


Q ss_pred             HHHHHhCCCeEEEEEEecCc
Q psy2827          86 VELIKSGGDVLSLTVISVSP  105 (373)
Q Consensus        86 ~~~i~~~g~~v~l~V~r~~~  105 (373)
                      ...++..+..+.++|.|...
T Consensus        75 ~~~~~~~~~~v~l~v~R~~~   94 (105)
T 2awx_A           75 VTALKNTSDFVYLKVAKPTS   94 (105)
T ss_dssp             HHHHHSCCSEEEEEEECCCC
T ss_pred             HHHHHcCCCeEEEEEEcCCC
Confidence            99998888999999988543

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A

Probab=99.46  E-value=9.7e-13  Score=103.33  Aligned_cols=89  Identities=31%  Similarity=0.512  Sum_probs=74.6

Q ss_pred             CcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHH
Q psy2827           8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVV   86 (373)
Q Consensus         8 ~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~   86 (373)
                      ..++|+|.|++.+|||++.++.+.+.       .+...+++|..|.++|||+++| |++||+|++|||+++.++++.++.
T Consensus         3 ~~~~v~l~k~~~g~G~~i~gg~~~~~-------~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~   75 (94)
T 2fe5_A            3 TIMEVNLLKGPKGLGFSIAGGIGNQH-------IPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAV   75 (94)
T ss_dssp             CEEEEEEECCTTCSCEEEEECBTSCS-------BTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHH
T ss_pred             EEEEEEEEECCCCCCEEEEcccCCCC-------CCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHH
Confidence            46889999999999999998754221       0112356899999999999999 999999999999999998899999


Q ss_pred             HHHHhCCCeEEEEEEec
Q psy2827          87 ELIKSGGDVLSLTVISV  103 (373)
Q Consensus        87 ~~i~~~g~~v~l~V~r~  103 (373)
                      ..++..+..+.++|.|.
T Consensus        76 ~~~~~~~~~v~l~v~R~   92 (94)
T 2fe5_A           76 ASLKNTSDMVYLKVAKP   92 (94)
T ss_dssp             HHHHTCCSEEEEEEECC
T ss_pred             HHHHcCCCeEEEEEEcC
Confidence            99988777899998763

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.46  E-value=2.3e-13  Score=108.82  Aligned_cols=87  Identities=34%  Similarity=0.546  Sum_probs=76.8

Q ss_pred             CCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHH
Q psy2827           4 TQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHK   83 (373)
Q Consensus         4 ~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~   83 (373)
                      .++..||+|+|.|+..+|||++.+..+             ..+++|..|.++|||+++||++||+|++|||+++.++++.
T Consensus         2 s~~~~~r~v~l~k~~~g~G~~l~~~~~-------------~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~   68 (102)
T 2d90_A            2 SSGSSGRVVVIKKGSNGYGFYLRAGPE-------------QKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHD   68 (102)
T ss_dssp             CSCSSSEEEEEECCSSSSSCEEEECSS-------------SSSEEEECCCTTSTTTTTTCCTTCEEEEESSCBCTTSCHH
T ss_pred             CCCCCCEEEEEeeCCCCccEEEEeecC-------------CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHH
Confidence            467789999999999999999987532             1245899999999999999999999999999999998899


Q ss_pred             HHHHHHHhCCCeEEEEEEec
Q psy2827          84 QVVELIKSGGDVLSLTVISV  103 (373)
Q Consensus        84 ~~~~~i~~~g~~v~l~V~r~  103 (373)
                      ++...++..++.+.+++.|.
T Consensus        69 ~~~~~l~~~g~~v~l~v~r~   88 (102)
T 2d90_A           69 GVVEMIRKGGDQTTLLVLDK   88 (102)
T ss_dssp             HHHHHHHHSTTEEEEEECST
T ss_pred             HHHHHHHcCCCEEEEEEEEC
Confidence            99999988889999999764

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}

Probab=99.46  E-value=3.6e-13  Score=105.05  Aligned_cols=84  Identities=30%  Similarity=0.570  Sum_probs=72.3

Q ss_pred             CcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHH
Q psy2827           8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVV   86 (373)
Q Consensus         8 ~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~   86 (373)
                      .+++|+|.|+..+|||++.++.+.+           .| ++|..|.++|||+++| |++||+|++|||.++.+.++.++.
T Consensus         2 ~~~~v~l~~~~~g~G~~~~~g~~~~-----------~~-~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~   69 (90)
T 2q9v_A            2 MEQDIFLWRKETGFGFRILGGNEPG-----------EP-IYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVV   69 (90)
T ss_dssp             EEEEEEEECBTTBCCEEEEECSSTT-----------SC-EEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHH
T ss_pred             CcEEEEEEECCCccCEEEEccccCC-----------CC-EEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHH
Confidence            5789999999999999999863321           23 5899999999999999 999999999999999888899999


Q ss_pred             HHHHhC--CCeEEEEEEec
Q psy2827          87 ELIKSG--GDVLSLTVISV  103 (373)
Q Consensus        87 ~~i~~~--g~~v~l~V~r~  103 (373)
                      ..++..  +..+.++|.|.
T Consensus        70 ~~l~~~~~~~~v~l~v~R~   88 (90)
T 2q9v_A           70 QLMQQAAKQGHVNLTVRQT   88 (90)
T ss_dssp             HHHHHHHHHTEEEEEEEEC
T ss_pred             HHHHhCCCCCeEEEEEEec
Confidence            999874  45899998763

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*

Probab=99.46  E-value=1.1e-12  Score=106.12  Aligned_cols=97  Identities=34%  Similarity=0.557  Sum_probs=76.3

Q ss_pred             CcEEEEEEcC-CCCccEEEEecccCCCccccccc-cccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHH
Q psy2827           8 GPREVQIAKS-DTGFGFNVRGQVSEGGQLRSING-ELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQV   85 (373)
Q Consensus         8 ~~r~v~l~r~-~~g~Gfsi~g~~~~~~~~~~~g~-~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~   85 (373)
                      .+++++|.|. ..+|||++.++...+... .... ..+.++++|..|.++|||+++||++||+|++|||+++.++++.++
T Consensus         7 ~~~~v~l~~~~~~g~G~~l~~~~~~~~~~-~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~   85 (109)
T 1q3o_A            7 KEKTVLLQKKDSEGFGFVLRGAKAQTPIE-EFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQV   85 (109)
T ss_dssp             EEEEEEEECCTTSCCSEEEEESSCCCTTS-CCCCCSSCCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHH
T ss_pred             CcEEEEEEECCCCCCcEEEEeccCCCCcc-cccccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHH
Confidence            5788999855 468999999875421110 0111 112346789999999999999999999999999999999888999


Q ss_pred             HHHHHhCCCeEEEEEEecCc
Q psy2827          86 VELIKSGGDVLSLTVISVSP  105 (373)
Q Consensus        86 ~~~i~~~g~~v~l~V~r~~~  105 (373)
                      ..+++..++.+.++|.+..+
T Consensus        86 ~~~l~~~~~~v~l~v~~~~~  105 (109)
T 1q3o_A           86 VNMIRQGGNTLMVKVVMVTR  105 (109)
T ss_dssp             HHHHHHTTTEEEEEEEEEEC
T ss_pred             HHHHHhCCCEEEEEEEECCC
Confidence            99998888899999988654

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.46  E-value=6.3e-13  Score=107.68  Aligned_cols=95  Identities=26%  Similarity=0.374  Sum_probs=81.1

Q ss_pred             CCCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCC
Q psy2827           3 STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGAT   81 (373)
Q Consensus         3 ~~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s   81 (373)
                      |..+...++|+|.|++.+|||++.++...+.         ..++++|..|.++|||+++| |++||+|++|||+++.+.+
T Consensus         3 s~~~~~~~~v~l~~~~~glG~~l~~g~~~~~---------~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~   73 (110)
T 1um1_A            3 SGSSGYVFTVELERGPSGLGMGLIDGMHTHL---------GAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLG   73 (110)
T ss_dssp             CCSCCCEEEEEEECCTTCCCEEEEETTTSTT---------CCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCC
T ss_pred             CCCCCcEEEEEEEECCCccCEEEeCCcCCCC---------CCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCC
Confidence            5667788999999999999999998643210         13456899999999999999 9999999999999999888


Q ss_pred             HHHHHHHHHhCCCeEEEEEEecCcc
Q psy2827          82 HKQVVELIKSGGDVLSLTVISVSPE  106 (373)
Q Consensus        82 ~~~~~~~i~~~g~~v~l~V~r~~~~  106 (373)
                      +.++...++..++.+.|+|.|....
T Consensus        74 ~~~~~~~~~~~~~~v~l~v~R~~~~   98 (110)
T 1um1_A           74 YLRAVDLIRHGGKKMRFLVAKSDVE   98 (110)
T ss_dssp             HHHHHHHHHTCCSEEEEEEECCCHH
T ss_pred             HHHHHHHHHcCCCeEEEEEEeCCcc
Confidence            9999999998889999999986543

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.46  E-value=4.7e-13  Score=107.51  Aligned_cols=89  Identities=24%  Similarity=0.491  Sum_probs=76.1

Q ss_pred             CCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHH
Q psy2827           6 QTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQ   84 (373)
Q Consensus         6 ~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~   84 (373)
                      ....+.|++.|+..+|||++.++.+..           .|.++|..|.+++||+++| |++||+|++|||+++.+++|++
T Consensus         4 g~~~~~v~l~k~~~glG~~i~gg~~~~-----------~~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~   72 (103)
T 1ufx_A            4 GSSGTLVRVKKSAATLGIAIEGGANTR-----------QPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHRE   72 (103)
T ss_dssp             CSSSEEEEEECCSSSCCEEEECBTTSS-----------CSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHH
T ss_pred             CCceEEEEEEcCCCcCCeEEECCCCCC-----------CCcEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHH
Confidence            345788999999999999999875421           2555899999999999999 9999999999999999999999


Q ss_pred             HHHHHHh-----CCCeEEEEEEecCc
Q psy2827          85 VVELIKS-----GGDVLSLTVISVSP  105 (373)
Q Consensus        85 ~~~~i~~-----~g~~v~l~V~r~~~  105 (373)
                      ++++++.     .+++++++|.|...
T Consensus        73 ~~~~l~~~~~~~~~~~i~l~v~r~~~   98 (103)
T 1ufx_A           73 AARIIAEAFKTKDRDYIDFLVTEFNS   98 (103)
T ss_dssp             HHHHHHHHHHCSSCSEEEEEECCCCC
T ss_pred             HHHHHHHhcccCCCCeEEEEEEEccc
Confidence            9999987     57889999887643

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=99.45  E-value=8.9e-13  Score=104.23  Aligned_cols=90  Identities=28%  Similarity=0.499  Sum_probs=75.6

Q ss_pred             CcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHH
Q psy2827           8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVV   86 (373)
Q Consensus         8 ~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~   86 (373)
                      +..+|++.|++.+|||++.++.+.+.        ....+++|..|.++|||+++| |++||+|++|||+++.+++++++.
T Consensus         3 ~~~~v~l~k~~~~lG~~i~~~~~~~~--------~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~   74 (97)
T 2jil_A            3 RTVEVTLHKEGNTFGFVIRGGAHDDR--------NKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAM   74 (97)
T ss_dssp             EEEEEEEECBTTBCSEEEEEECCSCC----------CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHH
T ss_pred             eEEEEEEEeCCCccCEEEeCcccCCC--------CCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHH
Confidence            45778999988999999998743210        012345899999999999999 999999999999999999999999


Q ss_pred             HHHHhCCCeEEEEEEecCc
Q psy2827          87 ELIKSGGDVLSLTVISVSP  105 (373)
Q Consensus        87 ~~i~~~g~~v~l~V~r~~~  105 (373)
                      .+++..++.+.++|.|...
T Consensus        75 ~~l~~~g~~v~l~v~R~~~   93 (97)
T 2jil_A           75 SILKQCGQEAALLIEYDVS   93 (97)
T ss_dssp             HHHHHSCSEEEEEEEEECC
T ss_pred             HHHHcCCCeEEEEEEeCCC
Confidence            9999888999999988543

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A

Probab=99.45  E-value=6.1e-13  Score=104.58  Aligned_cols=86  Identities=43%  Similarity=0.648  Sum_probs=74.7

Q ss_pred             CCCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCH
Q psy2827           3 STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATH   82 (373)
Q Consensus         3 ~~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~   82 (373)
                      +..+..+|+|++.|+..+|||++.+.                .+++|..|.++|||+++||++||+|++|||+++.+.++
T Consensus         3 ~~~~~~~r~v~l~~~~~~~G~~l~~~----------------~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~   66 (93)
T 2dls_A            3 SGSSGVQRCVIIQKDQHGFGFTVSGD----------------RIVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSH   66 (93)
T ss_dssp             CCCCCCEEEEEEECSSSSCCEEEECS----------------SSCEEEEECSSSTTTTTTCCSSCEEEEETTEECSSSCH
T ss_pred             CCCCCCCEEEEEEeCCCceeEEEeCC----------------CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCH
Confidence            46778899999999999999999764                12479999999999999999999999999999999888


Q ss_pred             HHHHHHHHhCCCeEEEEEEecCc
Q psy2827          83 KQVVELIKSGGDVLSLTVISVSP  105 (373)
Q Consensus        83 ~~~~~~i~~~g~~v~l~V~r~~~  105 (373)
                      .++...++ .++.+.++|.|..+
T Consensus        67 ~~~~~~~~-~g~~v~l~v~R~~~   88 (93)
T 2dls_A           67 LEVVKLIK-SGAYVALTLLGSSS   88 (93)
T ss_dssp             HHHHHHHT-SSSEEEEEEECCCC
T ss_pred             HHHHHhhc-CCCEEEEEEEECCC
Confidence            88777776 58999999988543

>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A

Probab=99.45  E-value=1.1e-12  Score=101.64  Aligned_cols=83  Identities=29%  Similarity=0.500  Sum_probs=71.7

Q ss_pred             CcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHH-cCCCCCCEEEEECCEEcCCCCHHHH
Q psy2827           8 GPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEK-AGIRKGDRILAVNNVNVEGATHKQV   85 (373)
Q Consensus         8 ~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~-aGL~~GD~Il~InG~~v~~~s~~~~   85 (373)
                      .+++|+|.|++ .+|||++.++...            ..+++|..|.++|||++ +||++||+|++|||+++.+++|.++
T Consensus         2 ~~~~v~l~~~~~~~lG~~i~~~~~~------------~~~~~V~~V~~gspA~~~agl~~GD~I~~vng~~v~~~~~~~~   69 (87)
T 4e34_A            2 PIRKVLLLKEDHEGLGISITGGKEH------------GVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEA   69 (87)
T ss_dssp             CCEEEEEECCTTBCCCEEEEEEGGG------------TEEEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHH
T ss_pred             CEEEEEEEECCCCcccEEEEccCCC------------CCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHH
Confidence            57899999986 5899999886432            12358999999999999 6999999999999999999889999


Q ss_pred             HHHHHhCCCeEEEEEEe
Q psy2827          86 VELIKSGGDVLSLTVIS  102 (373)
Q Consensus        86 ~~~i~~~g~~v~l~V~r  102 (373)
                      ...++.+++.+.++|..
T Consensus        70 ~~~~~~~~~~v~l~v~~   86 (87)
T 4e34_A           70 VTILSQQRGEIEFEVVY   86 (87)
T ss_dssp             HHHHHHCCSEEEEEEEE
T ss_pred             HHHHHcCCCeEEEEEEE
Confidence            99999888889988864

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A

Probab=99.45  E-value=1.3e-12  Score=104.25  Aligned_cols=91  Identities=29%  Similarity=0.509  Sum_probs=76.9

Q ss_pred             CcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHH
Q psy2827           8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVV   86 (373)
Q Consensus         8 ~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~   86 (373)
                      ..++|+|.|++.+|||++.++.+.+.       ....++++|..|.++|||+++| |++||+|++|||.++.+.++.++.
T Consensus         4 ~~~~v~l~k~~~glG~~i~~g~~~~~-------~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~   76 (102)
T 2i1n_A            4 KYEEIVLERGNSGLGFSIAGGIDNPH-------VPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAV   76 (102)
T ss_dssp             EEEEEEEECBTTBTSEEEEECTTSCS-------STTCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHH
T ss_pred             eEEEEEEEECCCcCCEEEEcccCCCC-------cCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHH
Confidence            45789999999999999998744211       0113456899999999999999 999999999999999999999999


Q ss_pred             HHHHhCCCeEEEEEEecCc
Q psy2827          87 ELIKSGGDVLSLTVISVSP  105 (373)
Q Consensus        87 ~~i~~~g~~v~l~V~r~~~  105 (373)
                      ..++..+..+.++|.|...
T Consensus        77 ~~~~~~g~~v~l~v~R~~~   95 (102)
T 2i1n_A           77 EALKEAGPVVRLVVRRRQP   95 (102)
T ss_dssp             HHHHHSCSEEEEEEEEECC
T ss_pred             HHHHcCCCeEEEEEEeCCC
Confidence            9998888999999988553

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}

Probab=99.45  E-value=5.6e-13  Score=108.22  Aligned_cols=83  Identities=30%  Similarity=0.470  Sum_probs=71.2

Q ss_pred             CCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHH
Q psy2827           7 TGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVV   86 (373)
Q Consensus         7 ~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~   86 (373)
                      ..||+|+|.|++.+|||++.+.               .| ++|..|.++|||++|||++||+|++|||+++.+++++++.
T Consensus        22 ~~~r~v~l~k~~~~~G~~l~~~---------------~~-v~V~~V~~gspA~~AGL~~GD~Il~VnG~~v~~~~~~dv~   85 (109)
T 2vsv_A           22 SMPRSIRFTAEEGDLGFTLRGN---------------AP-VQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWLTLSEVM   85 (109)
T ss_dssp             HSCEEEEECCGGGCCCEEEESS---------------SS-CEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHH
T ss_pred             CCCEEEEEEeCCCceeEEEeCC---------------CC-eEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHH
Confidence            4689999999989999999754               22 3799999999999999999999999999999987799999


Q ss_pred             HHHHhC-CCeEEEEEEecCc
Q psy2827          87 ELIKSG-GDVLSLTVISVSP  105 (373)
Q Consensus        87 ~~i~~~-g~~v~l~V~r~~~  105 (373)
                      ++++.. +.++.++|.+..+
T Consensus        86 ~~i~~~~~~~v~l~V~~~~~  105 (109)
T 2vsv_A           86 KLLKSFGEDEIEMKVVSLLD  105 (109)
T ss_dssp             HHHHTTTTSCEEEEEESCC-
T ss_pred             HHHHhCCCCeEEEEEEECCC
Confidence            999885 4469999987543

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=2.5e-13  Score=109.25  Aligned_cols=89  Identities=26%  Similarity=0.424  Sum_probs=77.0

Q ss_pred             CCCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCH
Q psy2827           3 STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATH   82 (373)
Q Consensus         3 ~~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~   82 (373)
                      ++..++||+|+|.|+..+|||++.+...             ..+++|..|.++|||+++||++||+|++|||+++.++++
T Consensus         3 ~~~~~~~r~v~l~k~~~~~G~~l~~~~~-------------~~g~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~   69 (106)
T 2eei_A            3 SGSSGQPRLCYLVKEGGSYGFSLKTVQG-------------KKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASH   69 (106)
T ss_dssp             SCCCSSSEEEEEECCSSSCSCCEECCSS-------------CCSCEECCCCTTSHHHHHTCCSSEEEEEETTEECTTCCH
T ss_pred             CCCCCCCEEEEEEECCCCCCEEEEeccC-------------CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCH
Confidence            4567899999999998999999986532             134579999999999999999999999999999998889


Q ss_pred             HHHHHHHHhCCCeEEEEEEecC
Q psy2827          83 KQVVELIKSGGDVLSLTVISVS  104 (373)
Q Consensus        83 ~~~~~~i~~~g~~v~l~V~r~~  104 (373)
                      .++...++..++.+.+++.|..
T Consensus        70 ~~~~~~~~~~~~~v~l~v~r~~   91 (106)
T 2eei_A           70 EEVVEKVKKSGSRVMFLLVDKE   91 (106)
T ss_dssp             HHHHHHHHHHCSEEEEEECCTT
T ss_pred             HHHHHHHHhCCCeEEEEEEcCc
Confidence            9999999877888999987643

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=99.44  E-value=1.6e-12  Score=102.93  Aligned_cols=88  Identities=26%  Similarity=0.418  Sum_probs=76.0

Q ss_pred             CCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHH
Q psy2827           7 TGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQV   85 (373)
Q Consensus         7 ~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~   85 (373)
                      ..+++|++.|+..+|||++.++.+.+           ..+++|..|.++|||+++| |++||+|++|||.++.++++.++
T Consensus         3 g~~~~v~l~~~~~~lG~~l~~~~~~~-----------~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~   71 (98)
T 2opg_A            3 GCETTIEISKGRTGLGLSIVGGSDTL-----------LGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEA   71 (98)
T ss_dssp             CEEEEEEEECBTTBTCEEEEECTTST-----------TCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHH
T ss_pred             CCEEEEEEEECCCcccEEEecCCCCC-----------CCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHH
Confidence            46789999999999999999864321           1356899999999999999 99999999999999999889999


Q ss_pred             HHHHHhCCCeEEEEEEecCc
Q psy2827          86 VELIKSGGDVLSLTVISVSP  105 (373)
Q Consensus        86 ~~~i~~~g~~v~l~V~r~~~  105 (373)
                      ...++..++.+.++|.|...
T Consensus        72 ~~~~~~~~~~v~l~v~R~~~   91 (98)
T 2opg_A           72 INVLRQTPQRVRLTLYRDEA   91 (98)
T ss_dssp             HHHHHTCCSEEEEEEEECSS
T ss_pred             HHHHHhCCCeEEEEEEcCCC
Confidence            99998877999999988543

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.44  E-value=9.7e-13  Score=106.71  Aligned_cols=89  Identities=21%  Similarity=0.486  Sum_probs=75.1

Q ss_pred             CCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHH
Q psy2827           5 QQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHK   83 (373)
Q Consensus         5 ~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~   83 (373)
                      .+...++|++.|+ .+|||++.++.+...          .++++|..|.+++||+++| |++||+|++|||+++.+++|+
T Consensus        12 ~~~~~~~v~l~k~-~glG~~i~gg~~~~~----------~~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~   80 (109)
T 1wi4_A           12 RDPAFRVITVTKE-TGLGLKILGGINRNE----------GPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFE   80 (109)
T ss_dssp             CCTTEEEEEECCS-SCCCEEEEECSSSSS----------CSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHH
T ss_pred             CCCcEEEEEEeCC-CccCEEEEeccCCCC----------CCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHH
Confidence            3446688999887 899999998754211          2346899999999999999 999999999999999999999


Q ss_pred             HHHHHHHh-C---CCeEEEEEEecC
Q psy2827          84 QVVELIKS-G---GDVLSLTVISVS  104 (373)
Q Consensus        84 ~~~~~i~~-~---g~~v~l~V~r~~  104 (373)
                      +++++++. .   +..+++++.|..
T Consensus        81 ~~~~~l~~~~~r~~~~~~l~v~R~~  105 (109)
T 1wi4_A           81 EAKSIITRAKLRSESPWEIAFIRSG  105 (109)
T ss_dssp             HHHHHHHHSCCSSSSCEEEEEECCC
T ss_pred             HHHHHHHccccCCCceEEEEEEeCC
Confidence            99999998 5   688999888743

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}

Probab=99.44  E-value=9.9e-13  Score=105.46  Aligned_cols=90  Identities=28%  Similarity=0.456  Sum_probs=73.8

Q ss_pred             CCCCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHc-CCCCCCEEEEECCEEcCCCC
Q psy2827           4 TQQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA-GIRKGDRILAVNNVNVEGAT   81 (373)
Q Consensus         4 ~~~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~a-GL~~GD~Il~InG~~v~~~s   81 (373)
                      ..+..+++|++.|.+ .+|||++.++.+.            ..+++|..|.++|||+++ ||++||+|++|||.++.+++
T Consensus         5 ~~~~~~~~v~l~~~~~~~lG~~l~~g~~~------------~~~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~~   72 (103)
T 2dc2_A            5 QGVGPIRKVLLLKEDHEGLGISITGGKEH------------GVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTK   72 (103)
T ss_dssp             ----CEEEEEEECCSSSCCCEEEEEEGGG------------TEEEEEEEECTTSHHHHHTCCCSSEEEEEETTEESTTSC
T ss_pred             CCCCCcEEEEEEeCCCCccCEEEEeccCC------------CCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCC
Confidence            456678999999876 6899999987432            123589999999999995 99999999999999999999


Q ss_pred             HHHHHHHHHhCCCeEEEEEEecCc
Q psy2827          82 HKQVVELIKSGGDVLSLTVISVSP  105 (373)
Q Consensus        82 ~~~~~~~i~~~g~~v~l~V~r~~~  105 (373)
                      +.++..+++..+..++|++.+...
T Consensus        73 ~~~~~~~l~~~~~~v~l~v~~~~~   96 (103)
T 2dc2_A           73 HKEAVTILSQQRGEIEFEVVYVAL   96 (103)
T ss_dssp             HHHHHHHHHHCCSEEEEEEEECC-
T ss_pred             HHHHHHHHHhCCCcEEEEEEecCC
Confidence            999999999987899999987543

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}

Probab=99.43  E-value=1.5e-12  Score=100.38  Aligned_cols=81  Identities=32%  Similarity=0.523  Sum_probs=69.6

Q ss_pred             EEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHH
Q psy2827          10 REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVEL   88 (373)
Q Consensus        10 r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~~~   88 (373)
                      .++++.|+..+|||++.++...            .++++|..|.++|||+++| |++||+|++|||+++.++++.++.++
T Consensus         2 ~~v~l~k~~~g~G~~i~~~~~~------------~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~   69 (85)
T 2i04_A            2 IHTKLRKSSRGFGFTVVGGDEP------------DEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKI   69 (85)
T ss_dssp             EEEEEECBTTBSSEEEEECCST------------TBCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             EEEEEEECCCCCCEEEEcccCC------------CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            4688999999999999885321            2345899999999999999 99999999999999998889999999


Q ss_pred             HHhC--CCeEEEEEEe
Q psy2827          89 IKSG--GDVLSLTVIS  102 (373)
Q Consensus        89 i~~~--g~~v~l~V~r  102 (373)
                      ++..  ++.+.++|.|
T Consensus        70 l~~~~~g~~v~l~v~R   85 (85)
T 2i04_A           70 FQSIPIGASVDLELCR   85 (85)
T ss_dssp             HHTSCTTCEEEEEEEC
T ss_pred             HHhCCCCCeEEEEEEC
Confidence            9873  8889988864

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}

Probab=99.43  E-value=9.2e-13  Score=104.41  Aligned_cols=86  Identities=35%  Similarity=0.533  Sum_probs=73.6

Q ss_pred             CCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHH
Q psy2827           5 QQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQ   84 (373)
Q Consensus         5 ~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~   84 (373)
                      ....+|.+++.|+..+|||++.+...             .++++|..|.++|||+++||++||+|++|||+++.++++.+
T Consensus         6 ~~~~~~~~~l~~~~~g~G~~~~~~~~-------------~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~   72 (98)
T 2jxo_A            6 TMLRPRLCTMKKGPSGYGFNLHSDKS-------------KPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGD   72 (98)
T ss_dssp             CSSCCEEEEEECTTTCCCEEEECCCS-------------SSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHH
T ss_pred             ccCCcEEEEEEeCCCcccEEEEecCC-------------CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHH
Confidence            45678999999999999999987632             23458999999999999999999999999999999999999


Q ss_pred             HHHHHHh-CCCeEEEEEEec
Q psy2827          85 VVELIKS-GGDVLSLTVISV  103 (373)
Q Consensus        85 ~~~~i~~-~g~~v~l~V~r~  103 (373)
                      +..+++. .+..+.++|.|.
T Consensus        73 ~~~~l~~~~~~~~~l~v~R~   92 (98)
T 2jxo_A           73 VVSAIRAGGDETKLLVVDRE   92 (98)
T ss_dssp             HHHHHHTTTTEEEEEECCHH
T ss_pred             HHHHHHhCCCcEEEEEEECC
Confidence            9999998 456666777653

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=99.43  E-value=1.5e-12  Score=101.05  Aligned_cols=83  Identities=25%  Similarity=0.409  Sum_probs=70.7

Q ss_pred             CcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHH
Q psy2827           8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVE   87 (373)
Q Consensus         8 ~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~   87 (373)
                      .+.+|++ +++.+|||++.++.+.            ..+++|..|.++|||+++||++||+|++|||.++.++++.++..
T Consensus         3 ~~~~v~l-~~~~~~G~~l~~g~~~------------~~~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~   69 (88)
T 2uzc_A            3 SNYSVSL-VGPAPWGFRLQGGKDF------------NMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQN   69 (88)
T ss_dssp             CEEEEEE-ESSSCCCEEEEEEGGG------------TEEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHH
T ss_pred             cEEEEEE-cCCCcccEEEECcCCC------------CCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            3567888 6778999999986432            12358999999999999999999999999999999988899999


Q ss_pred             HHHhCCCeEEEEEEec
Q psy2827          88 LIKSGGDVLSLTVISV  103 (373)
Q Consensus        88 ~i~~~g~~v~l~V~r~  103 (373)
                      .++..++.+.++|.|.
T Consensus        70 ~~~~~g~~v~l~v~R~   85 (88)
T 2uzc_A           70 KIKGCTGSLNMTLQRE   85 (88)
T ss_dssp             HHHTCCSEEEEEEECC
T ss_pred             HHHhCCCeEEEEEEeC
Confidence            9988889999999874

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}

Probab=99.43  E-value=1.7e-12  Score=105.61  Aligned_cols=87  Identities=31%  Similarity=0.484  Sum_probs=74.5

Q ss_pred             CCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHH
Q psy2827           5 QQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHK   83 (373)
Q Consensus         5 ~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~   83 (373)
                      .+..+++|++.|+..+|||++.++.+.            ..+++|..|.++|||+++| |++||+|++|||+++.++++.
T Consensus        21 ~~~~~~~v~l~~~~~glG~~l~~~~~~------------~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~   88 (112)
T 2r4h_A           21 QSMDFYTVELERGAKGFGFSLRGGREY------------NMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHS   88 (112)
T ss_dssp             --CCEEEEEEECBTTBTSEEEEECGGG------------TCCEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHH
T ss_pred             CCCceEEEEEEcCCCccCEEEeccccC------------CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHH
Confidence            345678999999999999999876321            2345899999999999999 999999999999999998899


Q ss_pred             HHHHHHHhCCCeEEEEEEec
Q psy2827          84 QVVELIKSGGDVLSLTVISV  103 (373)
Q Consensus        84 ~~~~~i~~~g~~v~l~V~r~  103 (373)
                      ++...++..+..+.++|.|.
T Consensus        89 ~~~~~l~~~g~~v~l~v~R~  108 (112)
T 2r4h_A           89 RAIELIKNGGRRVRLFLKRG  108 (112)
T ss_dssp             HHHHHHHTTTTEEEEEEECC
T ss_pred             HHHHHHHcCCCeEEEEEEeC
Confidence            99999988888999999763

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0

Probab=99.42  E-value=1.9e-12  Score=101.68  Aligned_cols=83  Identities=19%  Similarity=0.442  Sum_probs=72.2

Q ss_pred             CcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHH
Q psy2827           8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVV   86 (373)
Q Consensus         8 ~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~   86 (373)
                      ..|+|++.|++.+|||++.+...             ..+++|..|.++|||+++| |++||+|++|||.++.+.+|+++.
T Consensus         4 ~~r~v~l~k~~~~lG~~i~~~~~-------------~~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~   70 (93)
T 3o46_A            4 SVKIIRLVKNREPLGATIKKDEQ-------------TGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEII   70 (93)
T ss_dssp             CCEEEEEEESSSCCCEEEEECTT-------------TCCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHH
T ss_pred             cEEEEEEEeCCCCccEEEEecCC-------------CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHH
Confidence            46899999999999999987521             2345899999999999999 999999999999999888899999


Q ss_pred             HHHHhCCCeEEEEEEec
Q psy2827          87 ELIKSGGDVLSLTVISV  103 (373)
Q Consensus        87 ~~i~~~g~~v~l~V~r~  103 (373)
                      .+++..+..++++|.+.
T Consensus        71 ~~l~~~~~~v~l~v~~~   87 (93)
T 3o46_A           71 QILAQSQGAITFKIIPG   87 (93)
T ss_dssp             HHHHHCCEEEEEEEECC
T ss_pred             HHHHhCCCeEEEEEEeC
Confidence            99998766899988763

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=1.6e-12  Score=104.16  Aligned_cols=92  Identities=32%  Similarity=0.521  Sum_probs=77.4

Q ss_pred             CCCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCC
Q psy2827           3 STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGAT   81 (373)
Q Consensus         3 ~~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s   81 (373)
                      ++....++++++.|+..+|||++.+..+..+          ..+++|..|.++|||+++| |++||+|++|||+++.+++
T Consensus         6 ~~~~~~~~~v~l~~~~~g~G~~l~~~~~~~~----------~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~   75 (104)
T 2djt_A            6 SGQASGHFSVELVRGYAGFGLTLGGGRDVAG----------DTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLT   75 (104)
T ss_dssp             CCSCCCCEEEEEECCSSSCCEEEECCEETTE----------ECCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCC
T ss_pred             CCCCCceEEEEEEeCCCCccEEEEeccCCCC----------CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC
Confidence            4556678999999999999999988643210          1234899999999999999 9999999999999999988


Q ss_pred             HHHHHHHHHhCCCeEEEEEEecC
Q psy2827          82 HKQVVELIKSGGDVLSLTVISVS  104 (373)
Q Consensus        82 ~~~~~~~i~~~g~~v~l~V~r~~  104 (373)
                      +.++...++..+..+.|+|.|..
T Consensus        76 ~~~~~~~~~~~g~~v~l~v~R~g   98 (104)
T 2djt_A           76 HAQAVERIRAGGPQLHLVIRRPL   98 (104)
T ss_dssp             HHHHHHHHHHTCSEEEEEECCCC
T ss_pred             HHHHHHHHHcCCCeEEEEEEECC
Confidence            99999999888899999997743

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}

Probab=99.42  E-value=1.6e-13  Score=105.46  Aligned_cols=81  Identities=41%  Similarity=0.691  Sum_probs=71.0

Q ss_pred             CCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHH
Q psy2827           7 TGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVV   86 (373)
Q Consensus         7 ~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~   86 (373)
                      +++|+|+|.|+..+|||++.+.               .+ ++|..|.++|||+++||++||+|++|||+++.++++.++.
T Consensus         1 ~~~r~v~l~~~~~g~G~~~~~~---------------~~-~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~   64 (83)
T 2kv8_A            1 PRVRSVEVARGRAGYGFTLSGQ---------------AP-CVLSCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVV   64 (83)
T ss_dssp             CCEEEEEECCCSSCCSCBCCCS---------------SS-CBCCBCCTTSTTTTTTCCTTCEEEEETTEECSSCCHHHHH
T ss_pred             CCcEEEEEEeCCCcccEEEEcC---------------CC-eEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHH
Confidence            4789999999999999988664               12 3689999999999999999999999999999998889999


Q ss_pred             HHHHhCCCeEEEEEEec
Q psy2827          87 ELIKSGGDVLSLTVISV  103 (373)
Q Consensus        87 ~~i~~~g~~v~l~V~r~  103 (373)
                      ..++..++.+.++|.|.
T Consensus        65 ~~l~~~~~~v~l~v~R~   81 (83)
T 2kv8_A           65 KLIGKCSGVLHMVIAEG   81 (83)
T ss_dssp             HHHTTCSSCEEEEEECC
T ss_pred             HHHHhCCCeEEEEEEcC
Confidence            99987777899998763

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1

Probab=99.42  E-value=1.7e-12  Score=106.63  Aligned_cols=91  Identities=32%  Similarity=0.500  Sum_probs=76.4

Q ss_pred             CCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHH
Q psy2827           7 TGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQV   85 (373)
Q Consensus         7 ~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~   85 (373)
                      ...++|++.|++.+|||++.++.+.+..       +...+++|..|.++|||+++| |++||+|++|||+++.++++.++
T Consensus        23 ~~~~~v~l~k~~~glG~~i~gg~~~~~~-------~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~   95 (117)
T 2byg_A           23 MTVVEIKLFKGPKGLGFSIAGGVGNQHI-------PGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEA   95 (117)
T ss_dssp             EEEEEEEEECBTTBSSEEEEECTTSCSB-------TTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHH
T ss_pred             CceEEEEEEeCCCCcCEEEEcccCCCCc-------cCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHH
Confidence            3567899999999999999987542210       112356899999999999999 99999999999999998889999


Q ss_pred             HHHHHhCCCeEEEEEEecC
Q psy2827          86 VELIKSGGDVLSLTVISVS  104 (373)
Q Consensus        86 ~~~i~~~g~~v~l~V~r~~  104 (373)
                      ...++..+..+.|+|.|..
T Consensus        96 ~~~l~~~g~~v~l~v~R~~  114 (117)
T 2byg_A           96 VAILKNTSEVVYLKVGKPT  114 (117)
T ss_dssp             HHHHHTCCSEEEEEEEEEE
T ss_pred             HHHHHcCCCeEEEEEEeCC
Confidence            9999988899999998743

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1

Probab=99.42  E-value=2.1e-12  Score=102.20  Aligned_cols=90  Identities=21%  Similarity=0.340  Sum_probs=74.6

Q ss_pred             CcEEEEEEc-CCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHH
Q psy2827           8 GPREVQIAK-SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQV   85 (373)
Q Consensus         8 ~~r~v~l~r-~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~   85 (373)
                      .+++|+|.| +..+|||++.++.+.+..      .+...+++|..|.++|||+++| |++||+|++|||+++.++++.++
T Consensus         5 ~~~~v~l~k~~~~glG~~i~~~~~~~~~------~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~   78 (98)
T 1ihj_A            5 LIHMVTLDKTGKKSFGICIVRGEVKDSP------NTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAV   78 (98)
T ss_dssp             EEEEEEEECTTSSSCCEEEEEEEECCSS------SCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHH
T ss_pred             eEEEEEEEeCCCCCcCEEEeccccCCcc------ccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHH
Confidence            468899999 567999999887542210      0112356899999999999999 99999999999999999888999


Q ss_pred             HHHHHhCCCeEEEEEEec
Q psy2827          86 VELIKSGGDVLSLTVISV  103 (373)
Q Consensus        86 ~~~i~~~g~~v~l~V~r~  103 (373)
                      ..+++..++.+.++|.|.
T Consensus        79 ~~~l~~~g~~v~l~v~R~   96 (98)
T 1ihj_A           79 IDLIKEADFKIELEIQTF   96 (98)
T ss_dssp             HHHHHHSCSEEEEEEEEC
T ss_pred             HHHHhcCCCeEEEEEEeC
Confidence            999988899999999874

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.42  E-value=2e-12  Score=103.81  Aligned_cols=85  Identities=33%  Similarity=0.536  Sum_probs=74.3

Q ss_pred             CCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHH
Q psy2827           6 QTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQ   84 (373)
Q Consensus         6 ~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~   84 (373)
                      +..||+|+|.|++ .+|||++.++...            ..+++|..|.++|||+++||++||+|++|||+++.++++++
T Consensus        13 ~~~~~~v~l~k~~~~~lG~~~~~~~~~------------~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~   80 (104)
T 1wi2_A           13 QFLPRIVTLKKPPGAQLGFNIRGGKAS------------QLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSK   80 (104)
T ss_dssp             SSCCEEEEECCCTTCCCSEEEECCSSS------------CCCCEEEEECTTSHHHHHTCCTTCEEEEETTEECSSCCHHH
T ss_pred             CCCCEEEEEEeCCCCCccEEEEcccCC------------CCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHH
Confidence            4578999999997 7899999886321            13458999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCeEEEEEEec
Q psy2827          85 VVELIKSGGDVLSLTVISV  103 (373)
Q Consensus        85 ~~~~i~~~g~~v~l~V~r~  103 (373)
                      +..+++. ++.+.++|.|.
T Consensus        81 ~~~~l~~-~~~v~l~v~r~   98 (104)
T 1wi2_A           81 AVEILKT-AREISMRVRFF   98 (104)
T ss_dssp             HHHHHHH-SSSEEEEEECC
T ss_pred             HHHHHhC-CCEEEEEEEEC
Confidence            9999998 78899999874

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=1.4e-12  Score=102.60  Aligned_cols=87  Identities=30%  Similarity=0.336  Sum_probs=73.1

Q ss_pred             CCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHH
Q psy2827           4 TQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHK   83 (373)
Q Consensus         4 ~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~   83 (373)
                      .+...+++|++ +++.+|||++.++.+.            ..+++|..|.++|||+++||++||+|++|||+++.++++.
T Consensus         4 ~s~~~~~~v~l-~~~~~~G~~l~gg~~~------------~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~   70 (94)
T 2eeg_A            4 GSSGMPHSVTL-RGPSPWGFRLVGGRDF------------SAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHL   70 (94)
T ss_dssp             CCCCCCEEEEE-CCSSCCSCCEECCTTT------------TSCCEECCCCSSSHHHHTTCCTTCEEEEETTEETTTCCHH
T ss_pred             CCcCceEEEEE-eCCCccCEEEECccCC------------CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHH
Confidence            44556788998 5567999999986432            1234799999999999999999999999999999998889


Q ss_pred             HHHHHHHhCCCeEEEEEEec
Q psy2827          84 QVVELIKSGGDVLSLTVISV  103 (373)
Q Consensus        84 ~~~~~i~~~g~~v~l~V~r~  103 (373)
                      ++...++..++.+.++|.|.
T Consensus        71 ~~~~~~~~~g~~v~l~v~R~   90 (94)
T 2eeg_A           71 EAQNRIKGCHDHLTLSVSSG   90 (94)
T ss_dssp             HHHHHHHTCCSCEEEEEECC
T ss_pred             HHHHHHHcCCCeEEEEEEeC
Confidence            99988888888899999874

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.41  E-value=9.6e-13  Score=105.78  Aligned_cols=96  Identities=29%  Similarity=0.485  Sum_probs=78.8

Q ss_pred             CCCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCC
Q psy2827           3 STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGAT   81 (373)
Q Consensus         3 ~~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s   81 (373)
                      ++.+....+++|.|+..+|||++.++.+.+..      ....++++|..|.++|||+++| |++||+|++|||+++.+++
T Consensus         2 s~~~~~~~~v~l~~~~~glG~~l~~g~~~~~~------~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~   75 (105)
T 1wha_A            2 SSGSSGRHVACLARSERGLGFSIAGGKGSTPY------RAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEAR   75 (105)
T ss_dssp             CCCCCEEEEEEECCCTTCCSCEEECCTTSCCS------STTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCC
T ss_pred             CCCCCeeEEEEEEeCCCccCEEEEeccCCCcc------cCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCC
Confidence            45566778899999999999999987532100      0012356899999999999999 9999999999999999999


Q ss_pred             HHHHHHHHHhCCCeEEEEEEecC
Q psy2827          82 HKQVVELIKSGGDVLSLTVISVS  104 (373)
Q Consensus        82 ~~~~~~~i~~~g~~v~l~V~r~~  104 (373)
                      +.++...++..+..+.|+|.|..
T Consensus        76 ~~~~~~~l~~~g~~v~l~v~R~~   98 (105)
T 1wha_A           76 HDHAVSLLTAASPTIALLLEREA   98 (105)
T ss_dssp             HHHHHHHHTSCCSCEEEEEEECC
T ss_pred             HHHHHHHHHcCCCeEEEEEEECC
Confidence            99999999888889999998853

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0

Probab=99.41  E-value=1.6e-12  Score=104.52  Aligned_cols=84  Identities=36%  Similarity=0.627  Sum_probs=73.7

Q ss_pred             CcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHH
Q psy2827           8 GPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVV   86 (373)
Q Consensus         8 ~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~   86 (373)
                      +||+|+|.|.+ .+|||.+.....             ..+++|..|.++|||+++||++||+|++|||.++.++++.++.
T Consensus         1 g~r~v~l~~~~~~~~G~~l~~~~~-------------~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~   67 (106)
T 3ngh_A            1 GPRESKLSKQEGQNYGFFLRIEKD-------------TDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVV   67 (106)
T ss_dssp             CCEEEEEECCTTCCCCCEEECCTT-------------CCSCEEECCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHH
T ss_pred             CCEEEEEEeCCCCeeCEEEEEEeC-------------CCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHH
Confidence            47999999998 679999987632             2345799999999999999999999999999999998899999


Q ss_pred             HHHHhCCCeEEEEEEecC
Q psy2827          87 ELIKSGGDVLSLTVISVS  104 (373)
Q Consensus        87 ~~i~~~g~~v~l~V~r~~  104 (373)
                      ..++..++.+.++|.|..
T Consensus        68 ~~l~~~g~~v~l~v~r~~   85 (106)
T 3ngh_A           68 ELVRKSGNSVTLLVLDGD   85 (106)
T ss_dssp             HHHHHTTTEEEEEEECHH
T ss_pred             HHHHhCCCEEEEEEEECC
Confidence            999888899999998753

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.41  E-value=2.1e-12  Score=106.99  Aligned_cols=93  Identities=23%  Similarity=0.396  Sum_probs=79.5

Q ss_pred             CCCCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCC
Q psy2827           2 YSTQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGA   80 (373)
Q Consensus         2 ~~~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~   80 (373)
                      +...+...++|+|.|+..+|||++.++.+.+           ..+++|..|.++|||+++| |++||+|++|||+++.+.
T Consensus        19 ~~~~~~~~~~v~l~k~~~glG~~l~~~~~~~-----------~~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~   87 (124)
T 2daz_A           19 YADLPGELHIIELEKDKNGLGLSLAGNKDRS-----------RMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGR   87 (124)
T ss_dssp             STTSSSEEEEEEEECCSSCCCEEEECBSSTT-----------SCCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTS
T ss_pred             hccCCCceEEEEEEeCCCccCEEEeccCCCC-----------cCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCC
Confidence            3455677889999999999999999874321           2356899999999999999 999999999999999998


Q ss_pred             CHHHHHHHHHhCCCeEEEEEEecCc
Q psy2827          81 THKQVVELIKSGGDVLSLTVISVSP  105 (373)
Q Consensus        81 s~~~~~~~i~~~g~~v~l~V~r~~~  105 (373)
                      ++.++...++..+..+.|+|.|...
T Consensus        88 ~~~~~~~~~~~~~~~v~l~v~R~~~  112 (124)
T 2daz_A           88 SHQNASAIIKTAPSKVKLVFIRNED  112 (124)
T ss_dssp             CHHHHHHHHHHSCSEEEEEEEECTT
T ss_pred             CHHHHHHHHHcCCCeEEEEEEeCCC
Confidence            9999999998877899999988644

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.40  E-value=2e-12  Score=106.14  Aligned_cols=94  Identities=19%  Similarity=0.281  Sum_probs=78.0

Q ss_pred             CCCCCcEEEEEEcCC-------CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCE
Q psy2827           4 TQQTGPREVQIAKSD-------TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNV   75 (373)
Q Consensus         4 ~~~~~~r~v~l~r~~-------~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~   75 (373)
                      ..+...+.+++.|+.       .+|||++.++.+.+.       ....++++|..|.++|||+++| |++||+|++|||+
T Consensus         8 ~~~~~~~~v~l~r~~~~~~~~~~glG~~i~g~~~~~~-------~~~~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~   80 (117)
T 1ujd_A            8 HYIFPHARIKITRDSKDHTVSGNGLGIRIVGGKEIPG-------HSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGI   80 (117)
T ss_dssp             CCSSCEEEEEECCCSSSSCSSCCSCSEEEEEEEECSS-------SSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTE
T ss_pred             CCCCceEEEEEEecCcccCCCCCcccEEEeCCCCCCc-------ccCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCE
Confidence            345677889999987       689999998754221       0112356899999999999999 9999999999999


Q ss_pred             EcCCCCHHHHHHHHHhCCCeEEEEEEecC
Q psy2827          76 NVEGATHKQVVELIKSGGDVLSLTVISVS  104 (373)
Q Consensus        76 ~v~~~s~~~~~~~i~~~g~~v~l~V~r~~  104 (373)
                      ++.+++|.++..+++..+..+.|+|.|..
T Consensus        81 ~v~~~~~~~~~~~l~~~~~~v~l~v~R~~  109 (117)
T 1ujd_A           81 PLTSKTYEEVQSIISQQSGEAEICVRLDL  109 (117)
T ss_dssp             ECTTCCHHHHHHHHSCCSSCEEEEEESSC
T ss_pred             EcCCCCHHHHHHHHhcCCCEEEEEEEECC
Confidence            99999999999999988889999998743

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.40  E-value=1.9e-12  Score=104.41  Aligned_cols=90  Identities=23%  Similarity=0.410  Sum_probs=75.2

Q ss_pred             CCcEEEEEEcCCCCccEEEEe---cccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCH
Q psy2827           7 TGPREVQIAKSDTGFGFNVRG---QVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATH   82 (373)
Q Consensus         7 ~~~r~v~l~r~~~g~Gfsi~g---~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~   82 (373)
                      ...++|+|.|+..+|||++.+   +.+.+         ....+++|..|.++|||+++| |++||+|++|||+++.++++
T Consensus         8 ~~~~~v~l~k~~~glG~~i~~~~~g~~~~---------~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~   78 (107)
T 1wf8_A            8 LELFPVELEKDEDGLGISIIGMGVGADAG---------LEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQ   78 (107)
T ss_dssp             EEEEEEEEECBTTBSCEEEEEEEESCCTT---------CCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCH
T ss_pred             ceEEEEEEEECCCcccEEEEecCCCCCCC---------CCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            345778889999999999998   22110         012356899999999999999 99999999999999998889


Q ss_pred             HHHHHHHHhCCCeEEEEEEecCc
Q psy2827          83 KQVVELIKSGGDVLSLTVISVSP  105 (373)
Q Consensus        83 ~~~~~~i~~~g~~v~l~V~r~~~  105 (373)
                      .++..+++..+..+.|+|.|..+
T Consensus        79 ~~~~~~~~~~~~~v~l~v~R~~~  101 (107)
T 1wf8_A           79 NFAATVLRNTKGNVRFVIGREKP  101 (107)
T ss_dssp             HHHHHHHHHCCSEEEEEEEEECC
T ss_pred             HHHHHHHhcCCCeEEEEEEeCCC
Confidence            99999999888999999998654

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}

Probab=99.40  E-value=5.2e-12  Score=99.42  Aligned_cols=83  Identities=24%  Similarity=0.439  Sum_probs=72.4

Q ss_pred             cEEEEEEcCC--CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHH
Q psy2827           9 PREVQIAKSD--TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQV   85 (373)
Q Consensus         9 ~r~v~l~r~~--~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~   85 (373)
                      ..+|+|.|..  .+|||++.+..+             .++++|..|.++|||+++| |++||+|++|||.++.+.++.++
T Consensus         4 ~~~v~l~k~~~~~~lG~~~~~~~~-------------~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~   70 (95)
T 2vwr_A            4 ILQVALHKRDSGEQLGIKLVRRTD-------------EPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELA   70 (95)
T ss_dssp             EEEEEEECSSTTCCCCEEEEECSS-------------SCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHH
T ss_pred             EEEEEEEECCCCCcccEEEEeccC-------------CCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHH
Confidence            5679999864  579999987632             2456899999999999999 99999999999999999889999


Q ss_pred             HHHHHhCCCeEEEEEEecC
Q psy2827          86 VELIKSGGDVLSLTVISVS  104 (373)
Q Consensus        86 ~~~i~~~g~~v~l~V~r~~  104 (373)
                      ...++..+..+.+++.|..
T Consensus        71 ~~~~~~~g~~v~l~v~R~~   89 (95)
T 2vwr_A           71 AQIIQASGERVNLTIARPG   89 (95)
T ss_dssp             HHHHHHCCSEEEEEEEEES
T ss_pred             HHHHHcCCCEEEEEEEcCC
Confidence            9999888999999998854

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.40  E-value=6.8e-13  Score=106.34  Aligned_cols=88  Identities=27%  Similarity=0.506  Sum_probs=74.7

Q ss_pred             CCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHH
Q psy2827           5 QQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHK   83 (373)
Q Consensus         5 ~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~   83 (373)
                      ....+++++|.|+..+|||++.++.+.            ..+++|..|.++|||+++| |++||+|++|||+++.++++.
T Consensus         6 ~~~~~~~v~l~~~~~g~G~~i~~g~~~------------~~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~   73 (103)
T 1uep_A            6 SGYKELDVHLRRMESGFGFRILGGDEP------------GQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHR   73 (103)
T ss_dssp             SSEEEECCEEESSSSSCCEEECCCCST------------TSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHH
T ss_pred             CCceEEEEEEEeCCCccCEEEeeecCC------------CCCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHH
Confidence            344667789999989999999876321            1234799999999999999 999999999999999888899


Q ss_pred             HHHHHHHhC--CCeEEEEEEecC
Q psy2827          84 QVVELIKSG--GDVLSLTVISVS  104 (373)
Q Consensus        84 ~~~~~i~~~--g~~v~l~V~r~~  104 (373)
                      ++..+++..  +..+.|+|.|..
T Consensus        74 ~~~~~l~~~~~g~~v~l~v~R~~   96 (103)
T 1uep_A           74 YVIDLMHHAARNGQVNLTVRRKV   96 (103)
T ss_dssp             HHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             HHHHHHHhCCCCCcEEEEEEeCC
Confidence            999999884  899999998854

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.40  E-value=7.8e-12  Score=103.44  Aligned_cols=88  Identities=32%  Similarity=0.500  Sum_probs=75.1

Q ss_pred             CCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHH
Q psy2827           6 QTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQ   84 (373)
Q Consensus         6 ~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~   84 (373)
                      ....++|++.|+..+|||++.++.+.            ..+++|..|.++|||+++| |++||+|++|||+++.++++.+
T Consensus        17 ~~~~~~v~l~~~~~glG~~~~~g~~~------------~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~   84 (123)
T 1ueq_A           17 KGTFLSTTLKKSNMGFGFTIIGGDEP------------DEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHAD   84 (123)
T ss_dssp             CSEEEEEEEECCTTSCSEEEECCSSS------------SCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHH
T ss_pred             CCcEEEEEEEeCCCceeEEEecccCC------------CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHH
Confidence            33556789999999999999976321            1235899999999999999 9999999999999999888999


Q ss_pred             HHHHHHh--CCCeEEEEEEecCc
Q psy2827          85 VVELIKS--GGDVLSLTVISVSP  105 (373)
Q Consensus        85 ~~~~i~~--~g~~v~l~V~r~~~  105 (373)
                      +..+++.  .++.+.|+|.|..+
T Consensus        85 ~~~~l~~~~~g~~v~l~v~R~~~  107 (123)
T 1ueq_A           85 VVKLFQSVPIGQSVNLVLCRGYP  107 (123)
T ss_dssp             HHHHHHTSCTTCEEEEEEEESCC
T ss_pred             HHHHHHhCCCCCeEEEEEEeCCC
Confidence            9999998  48999999998654

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}

Probab=99.40  E-value=3.7e-12  Score=99.60  Aligned_cols=84  Identities=29%  Similarity=0.480  Sum_probs=72.2

Q ss_pred             CCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHH
Q psy2827           7 TGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQ   84 (373)
Q Consensus         7 ~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~   84 (373)
                      ...++|+|.|.+ .+|||++.+..+             ..+++|..|.++|||+++| |++||+|++|||+++.+.++.+
T Consensus         3 ~~~~~v~l~k~~~~~lG~~~~~~~~-------------~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~   69 (92)
T 2qg1_A            3 SDTLTIGLQKKPGKGLGLSIVGKRN-------------DTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEA   69 (92)
T ss_dssp             -CEEEEEEECCTTSCCSEEEECCSS-------------SCSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHH
T ss_pred             ceEEEEEEEeCCCCcccEEEEeccC-------------CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHH
Confidence            356889999875 789999987632             1345899999999999999 9999999999999999988999


Q ss_pred             HHHHHHhCCCeEEEEEEec
Q psy2827          85 VVELIKSGGDVLSLTVISV  103 (373)
Q Consensus        85 ~~~~i~~~g~~v~l~V~r~  103 (373)
                      +...++..+..+.++|.|.
T Consensus        70 ~~~~~~~~~~~v~l~v~R~   88 (92)
T 2qg1_A           70 VAALLKCSLGTVTLEVGRI   88 (92)
T ss_dssp             HHHHHHHCCSEEEEEEECC
T ss_pred             HHHHHHcCCCeEEEEEEcc
Confidence            9999988888999999874

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A

Probab=99.40  E-value=3.9e-12  Score=102.27  Aligned_cols=90  Identities=24%  Similarity=0.412  Sum_probs=73.7

Q ss_pred             CCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHH
Q psy2827           6 QTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQ   84 (373)
Q Consensus         6 ~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~   84 (373)
                      +....+|++ |+..+|||++.++....         ....+++|..|.++|||+++| |++||+|++|||+++.+.++.+
T Consensus         9 ~~~~~~v~l-~~~~glG~~i~~~~~~~---------~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~   78 (106)
T 3axa_A            9 EPEIITVTL-KKQNGMGLSIVAAKGAG---------QDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQER   78 (106)
T ss_dssp             -CCEEEEEE-ECSSSCSEEEEEEECSS---------CSSEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHH
T ss_pred             CceEEEEEE-CCCCccCEEEEeecCCC---------CCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHH
Confidence            345566777 88889999998764321         112356899999999999999 9999999999999999888999


Q ss_pred             HHHHHHhCCCeEEEEEEecCc
Q psy2827          85 VVELIKSGGDVLSLTVISVSP  105 (373)
Q Consensus        85 ~~~~i~~~g~~v~l~V~r~~~  105 (373)
                      +...++..++.+.++|.|...
T Consensus        79 ~~~~~~~~g~~v~l~v~R~~~   99 (106)
T 3axa_A           79 AAELMTRTSSVVTLEVAKQGA   99 (106)
T ss_dssp             HHHHHHTCCSEEEEEEECCCS
T ss_pred             HHHHHHcCCCeEEEEEEeCCc
Confidence            999998889999999987543

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=99.39  E-value=5.1e-12  Score=99.95  Aligned_cols=86  Identities=24%  Similarity=0.444  Sum_probs=73.1

Q ss_pred             CCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHH
Q psy2827           7 TGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQV   85 (373)
Q Consensus         7 ~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~   85 (373)
                      ...++|++.|...+|||++.+..+.            ..+++|..|.++|||+++| |++||+|++|||+++.++++.++
T Consensus         4 ~~~~~v~l~~~~~~lG~~i~~~~~~------------~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~   71 (97)
T 1n7e_A            4 AIIYTVELKRYGGPLGITISGTEEP------------FDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEA   71 (97)
T ss_dssp             CCEEEEEEECTTSCCCEEEECCSST------------TSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHH
T ss_pred             ceEEEEEEEeCCCCcCEEEEcccCC------------CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHH
Confidence            4557889988888899999876321            1234799999999999999 99999999999999998889999


Q ss_pred             HHHHHhCCCeEEEEEEecC
Q psy2827          86 VELIKSGGDVLSLTVISVS  104 (373)
Q Consensus        86 ~~~i~~~g~~v~l~V~r~~  104 (373)
                      ..+++..++.+.++|.|..
T Consensus        72 ~~~l~~~g~~v~l~v~R~~   90 (97)
T 1n7e_A           72 IHLLQMAGETVTLKIKKQT   90 (97)
T ss_dssp             HHHHHTCCSEEEEEEECCC
T ss_pred             HHHHHcCCCeEEEEEEeCC
Confidence            9999887899999998743

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=99.39  E-value=2.7e-12  Score=99.98  Aligned_cols=82  Identities=18%  Similarity=0.347  Sum_probs=69.5

Q ss_pred             CcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHH-cCCCCCCEEEEECCEEcCCCCHHHH
Q psy2827           8 GPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEK-AGIRKGDRILAVNNVNVEGATHKQV   85 (373)
Q Consensus         8 ~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~-aGL~~GD~Il~InG~~v~~~s~~~~   85 (373)
                      +.|.|+|.|++ .++||++.+...              .+++|..|.++|||++ +||++||+|++|||+++.+++|+++
T Consensus         1 ~~r~V~l~K~~~~~lG~~i~~~~~--------------~~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~~~   66 (88)
T 1kwa_A            1 RSRLVQFQKNTDEPMGITLKMNEL--------------NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQL   66 (88)
T ss_dssp             CCEEEEEEECSSSCCCEEEECSCG--------------GGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHH
T ss_pred             CeEEEEEEeCCCCceeEEEEeCCC--------------CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHH
Confidence            36899999996 789999987411              1247999999999999 8899999999999999997779999


Q ss_pred             HHHHHhCCCeEEEEEEec
Q psy2827          86 VELIKSGGDVLSLTVISV  103 (373)
Q Consensus        86 ~~~i~~~g~~v~l~V~r~  103 (373)
                      .++++....+++++|.|.
T Consensus        67 ~~~l~~~~~~v~l~v~r~   84 (88)
T 1kwa_A           67 QKMLREMRGSITFKIVPS   84 (88)
T ss_dssp             HHHHHHCCEEEEEEEECC
T ss_pred             HHHHhcCCCcEEEEEECC
Confidence            999998544888888763

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=2.7e-12  Score=105.73  Aligned_cols=93  Identities=27%  Similarity=0.433  Sum_probs=77.6

Q ss_pred             CCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHH
Q psy2827           6 QTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQ   84 (373)
Q Consensus         6 ~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~   84 (373)
                      +..+++|+|.|++.+|||++.++.+.+..       ....+++|..|.++|||+++| |++||+|++|||+++.++++.+
T Consensus        15 ~~~~~~v~l~r~~~~lG~~i~~~~~~~~~-------~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~   87 (120)
T 2eno_A           15 LVTEEEINLTRGPSGLGFNIVGGTDQQYV-------SNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQD   87 (120)
T ss_dssp             EEEEEEEEEECCSSSCSEEEECCTTTCSS-------SSCCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHH
T ss_pred             CCceEEEEEEECCCCCCEEEecccCCccc-------cCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHH
Confidence            34678899999999999999986432110       012356899999999999999 9999999999999999999999


Q ss_pred             HHHHHHhCCCeEEEEEEecCc
Q psy2827          85 VVELIKSGGDVLSLTVISVSP  105 (373)
Q Consensus        85 ~~~~i~~~g~~v~l~V~r~~~  105 (373)
                      +...++..++.+.|+|.|..+
T Consensus        88 ~~~~~~~~g~~v~l~v~R~~~  108 (120)
T 2eno_A           88 AVDLFRNAGYAVSLRVQHRLQ  108 (120)
T ss_dssp             HHHHHHHHCSEEEEEEEEEEE
T ss_pred             HHHHHHcCCCeEEEEEEeCCc
Confidence            999998878899999988654

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A

Probab=99.39  E-value=1.9e-12  Score=102.70  Aligned_cols=90  Identities=31%  Similarity=0.481  Sum_probs=72.3

Q ss_pred             EEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHH
Q psy2827          10 REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELI   89 (373)
Q Consensus        10 r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i   89 (373)
                      .++++.|++.+|||++.+.....+.     ...+..+++|..|.++|||++|||++||+|++|||.++.++++.++...+
T Consensus         4 ~~v~l~~~~~~~Gf~l~~~~~~~~~-----~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l   78 (99)
T 3khf_A            4 PPIVIHSSGKKYGFSLRAIRVYMGD-----SDVYTVHHVVWSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELL   78 (99)
T ss_dssp             CCEEEEC-CCCCCEEEEEEEEESSS-----SSCEEEEEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             CCEEEEeCCCCCcEEEEecccccCc-----cccccCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            4588899999999999876321110     01122345799999999999999999999999999999988899999999


Q ss_pred             HhCCCeEEEEEEecC
Q psy2827          90 KSGGDVLSLTVISVS  104 (373)
Q Consensus        90 ~~~g~~v~l~V~r~~  104 (373)
                      +..|+.+.+++.|..
T Consensus        79 ~~~g~~v~l~v~r~~   93 (99)
T 3khf_A           79 LKSGNKISLRTTALE   93 (99)
T ss_dssp             HHSCSEEEEEEECSC
T ss_pred             hcCCCEEEEEEEECC
Confidence            988999999998743

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A

Probab=99.39  E-value=4.6e-12  Score=104.02  Aligned_cols=88  Identities=34%  Similarity=0.591  Sum_probs=76.5

Q ss_pred             CCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCH
Q psy2827           4 TQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATH   82 (373)
Q Consensus         4 ~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~   82 (373)
                      ..++.+++|+|.|+..+|||++.+..+             ..+++|..|.++|||+++| |++||+|++|||.++.++++
T Consensus        10 ~~~~~~~~v~l~k~~~glG~~l~~~~~-------------~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~   76 (119)
T 1tp5_A           10 DIPREPRRIVIHRGSTGLGFNIVGGED-------------GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASH   76 (119)
T ss_dssp             CCCCSCEEEEEECTTSCCCEEEEECGG-------------GCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCH
T ss_pred             CCCCccEEEEEEECCCCccEEEecCCC-------------CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            457789999999999999999988632             1346899999999999999 99999999999999999888


Q ss_pred             HHHHHHHHhCCCeEEEEEEecC
Q psy2827          83 KQVVELIKSGGDVLSLTVISVS  104 (373)
Q Consensus        83 ~~~~~~i~~~g~~v~l~V~r~~  104 (373)
                      .+....++..++.+.+++.|..
T Consensus        77 ~~~~~~~~~~~~~v~l~v~r~~   98 (119)
T 1tp5_A           77 EQAAIALKNAGQTVTIIAQYKP   98 (119)
T ss_dssp             HHHHHHHHTSCSEEEEEEEECH
T ss_pred             HHHHHHHHcCCCeEEEEEEECC
Confidence            8888888888899999998743

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.39  E-value=1.1e-12  Score=109.72  Aligned_cols=92  Identities=20%  Similarity=0.324  Sum_probs=76.0

Q ss_pred             CCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHc-CCCCCCEEEEECCEEcCCCCHH
Q psy2827           5 QQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA-GIRKGDRILAVNNVNVEGATHK   83 (373)
Q Consensus         5 ~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~a-GL~~GD~Il~InG~~v~~~s~~   83 (373)
                      .+...++|+|.|+..||||+|.++.+.+.         ...+++|..|.+++||+++ ||++||+|++|||+++.+++|+
T Consensus        26 ~~~~~~~v~l~k~~~glG~~i~gg~~~~~---------~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~   96 (130)
T 1i16_A           26 AEATVCTVTLEKMSAGLGFSLEGGKGSLH---------GDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRF   96 (130)
T ss_dssp             SSEEEEEEEEETTSSSTTEEEECCCCCSS---------SCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHH
T ss_pred             CCCcEEEEEEEcCCCccCEEEecCcCCCC---------CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHH
Confidence            34466789999999999999998754210         0123489999999999999 8999999999999999999999


Q ss_pred             HHHHHHHhC-CCeEEEEEEecCc
Q psy2827          84 QVVELIKSG-GDVLSLTVISVSP  105 (373)
Q Consensus        84 ~~~~~i~~~-g~~v~l~V~r~~~  105 (373)
                      ++..+++.. +..+.++|.|...
T Consensus        97 ~~~~~l~~~~~~~v~l~v~r~~~  119 (130)
T 1i16_A           97 EAWNIIKALPDGPVTIVIRRKSL  119 (130)
T ss_dssp             HHHHHHHTSCSSEEEEEEEEESS
T ss_pred             HHHHHHHhCCCceEEEEEEeCCC
Confidence            999999984 6679999987543

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.39  E-value=2.2e-12  Score=104.11  Aligned_cols=92  Identities=42%  Similarity=0.563  Sum_probs=77.0

Q ss_pred             CCCCCcEEEEEEcCCCCccEEEE-----ecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEc
Q psy2827           4 TQQTGPREVQIAKSDTGFGFNVR-----GQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNV   77 (373)
Q Consensus         4 ~~~~~~r~v~l~r~~~g~Gfsi~-----g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v   77 (373)
                      ..+...++|+|.|++.+|||++.     ++.+...         ...+++|..|.++|||+++| |++||+|++|||+++
T Consensus         5 ~~~~~~~~v~l~k~~~~lG~~i~~~~~~gg~~~~~---------~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v   75 (108)
T 1q7x_A            5 PKPGDIFEVELAKNDNSLGISVTVLFDKGGVNTSV---------RHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSL   75 (108)
T ss_dssp             CCSSSEEEEEEESSSCSCCEEESSSSSSBCBCTTS---------SSCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEEC
T ss_pred             CCCCcEEEEEEEECCCCccEEEEEeccCCCccccC---------CCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEEC
Confidence            34566789999999999999998     5432210         12345899999999999999 999999999999999


Q ss_pred             CCCCHHHHHHHHHhCCCeEEEEEEecC
Q psy2827          78 EGATHKQVVELIKSGGDVLSLTVISVS  104 (373)
Q Consensus        78 ~~~s~~~~~~~i~~~g~~v~l~V~r~~  104 (373)
                      .++++.++...++..++.+.++|.|..
T Consensus        76 ~~~~~~~~~~~~~~~g~~v~l~v~R~~  102 (108)
T 1q7x_A           76 EGATHKQAVETLRNTGQVVHLLLEKGQ  102 (108)
T ss_dssp             BSCTTSHHHHHHHHTTSEEEEEEECCC
T ss_pred             CCCCHHHHHHHHHcCCCeEEEEEEeCC
Confidence            988899999999988899999998754

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A

Probab=99.39  E-value=1.8e-12  Score=99.83  Aligned_cols=82  Identities=26%  Similarity=0.370  Sum_probs=68.3

Q ss_pred             cEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHH
Q psy2827           9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVEL   88 (373)
Q Consensus         9 ~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~   88 (373)
                      +.+|++ +++.+|||++.++.+.            ..+++|..|.++|||+++||++||+|++|||+++.++++.++...
T Consensus         2 ~~~v~l-~~~~~~G~~l~gg~~~------------~~~v~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~   68 (85)
T 1rgw_A            2 AYSVTL-TGPGPWGFRLQGGKDF------------NMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNK   68 (85)
T ss_dssp             EEEEEE-CCSSCCCEEECCCGGG------------TSCCBEEEECTTSHHHHSSCCCCSBEEEETTEECTTCCHHHHHHH
T ss_pred             cEEEEE-eCCCccCEEEEeccCC------------CCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHH
Confidence            456788 4667899999876432            123479999999999999999999999999999999888999998


Q ss_pred             HHhCCCeEEEEEEec
Q psy2827          89 IKSGGDVLSLTVISV  103 (373)
Q Consensus        89 i~~~g~~v~l~V~r~  103 (373)
                      ++..++.+.++|.|.
T Consensus        69 ~~~~~~~v~l~v~R~   83 (85)
T 1rgw_A           69 IKSASYNLSLTLQKS   83 (85)
T ss_dssp             HTTCSSCEEEEEESC
T ss_pred             HHcCCCeEEEEEEeC
Confidence            887777799998763

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.38  E-value=2.8e-12  Score=102.62  Aligned_cols=88  Identities=24%  Similarity=0.403  Sum_probs=73.6

Q ss_pred             CCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHH
Q psy2827           5 QQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQ   84 (373)
Q Consensus         5 ~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~   84 (373)
                      ++....+|++. ++.+|||++.++.+..            .+++|..|.++|||++|||++||+|++|||+++.++++.+
T Consensus         2 ~~g~~~~v~l~-~~~~~G~~l~gg~~~~------------~~v~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~   68 (103)
T 1wf7_A            2 SSGSSGSVSLV-GPAPWGFRLQGGKDFN------------MPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLE   68 (103)
T ss_dssp             CCCCCEEEEEE-SSSCCSCCEEEETTTT------------EEEEECCCCTTCHHHHTTCCTTCBEEEETTEECSSCCHHH
T ss_pred             CCCCEEEEEEe-CCCccCEEEeccccCC------------CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHH
Confidence            35567888887 5688999999874321            1247999999999999999999999999999999988899


Q ss_pred             HHHHHHhCCCeEEEEEEecCc
Q psy2827          85 VVELIKSGGDVLSLTVISVSP  105 (373)
Q Consensus        85 ~~~~i~~~g~~v~l~V~r~~~  105 (373)
                      +...++..++.+.++|.|...
T Consensus        69 ~~~~~~~~g~~v~l~v~R~g~   89 (103)
T 1wf7_A           69 AQNKIKACTGSLNMTLQRASA   89 (103)
T ss_dssp             HHHHHHHCSSEEEEEECCCSC
T ss_pred             HHHHHHcCCCeEEEEEEeCCC
Confidence            999888888899999987544

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=99.38  E-value=4.3e-12  Score=98.71  Aligned_cols=83  Identities=25%  Similarity=0.398  Sum_probs=69.2

Q ss_pred             cEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHH
Q psy2827           9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVEL   88 (373)
Q Consensus         9 ~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~   88 (373)
                      +.++++. ++.+|||++.++.+.            ..+++|..|.++|||+++||++||+|++|||+++.++++.++...
T Consensus         4 ~~~v~~~-~~~~~G~~l~gg~~~------------~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~   70 (89)
T 2q3g_A            4 SFKVVLE-GPAPWGFRLQGGKDF------------NVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNK   70 (89)
T ss_dssp             EEEEEEE-SSSCCCEEEEEEGGG------------TEEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHH
T ss_pred             EEEEEEc-CCCcccEEEECcCCC------------CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            4556665 457899999886431            123479999999999999999999999999999998889999999


Q ss_pred             HHhCCCeEEEEEEecC
Q psy2827          89 IKSGGDVLSLTVISVS  104 (373)
Q Consensus        89 i~~~g~~v~l~V~r~~  104 (373)
                      ++..++.+.++|.|..
T Consensus        71 ~~~~g~~v~l~v~R~~   86 (89)
T 2q3g_A           71 IRACGERLSLGLSRAI   86 (89)
T ss_dssp             HHTCTTEEEEEEEEEC
T ss_pred             HHhCCCEEEEEEEeCC
Confidence            9888889999998754

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=99.38  E-value=4.3e-12  Score=98.24  Aligned_cols=81  Identities=25%  Similarity=0.378  Sum_probs=67.8

Q ss_pred             EEEEE-cCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHH
Q psy2827          11 EVQIA-KSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELI   89 (373)
Q Consensus        11 ~v~l~-r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i   89 (373)
                      ++++. +++.+|||++.++.+.            ..+++|..|.++|||+++||++||+|++|||+++.+++++++..++
T Consensus         3 ~~~v~~~~~~~lG~~l~~~~~~------------~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l   70 (87)
T 2pa1_A            3 ALTVDVAGPAPWGFRITGGRDF------------HTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKI   70 (87)
T ss_dssp             EEEEEECSSSCCSEEEEEEGGG------------TEEEEEEEECSSSHHHHTTCCTTCEEEEETTEESTTCCHHHHHHHH
T ss_pred             EEEEEECCCCccCEEEecccCC------------CCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            34444 4457899999987432            2245899999999999999999999999999999999999999999


Q ss_pred             HhCCCeEEEEEEec
Q psy2827          90 KSGGDVLSLTVISV  103 (373)
Q Consensus        90 ~~~g~~v~l~V~r~  103 (373)
                      +..++.+.++|.|.
T Consensus        71 ~~~~~~v~l~v~R~   84 (87)
T 2pa1_A           71 RQSPSPLRLQLDRI   84 (87)
T ss_dssp             HTCCSSEEEEEEEC
T ss_pred             HcCCCeEEEEEEec
Confidence            98668999999874

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A

Probab=99.38  E-value=5.5e-12  Score=104.57  Aligned_cols=86  Identities=22%  Similarity=0.356  Sum_probs=74.0

Q ss_pred             CCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHH
Q psy2827           7 TGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQ   84 (373)
Q Consensus         7 ~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~   84 (373)
                      ..++++++.|+. .+|||++.++...            .++++|..|.++|||+++| |++||+|++|||.++.+++|.+
T Consensus        18 ~~~~~v~l~k~~~~~lG~~i~gg~~~------------~~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~   85 (125)
T 3hpk_A           18 TVPGKVTLQKDAQNLIGISIGGGAQY------------CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVE   85 (125)
T ss_dssp             EEEEEEEEECCTTSCCCEEEEECSSC------------CSSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHH
T ss_pred             CCCeEEEEEeCCCCCcCEEEeccCCC------------CCCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHH
Confidence            357889999986 5799999987421            2456899999999999999 9999999999999999888999


Q ss_pred             HHHHHHhCCCeEEEEEEecC
Q psy2827          85 VVELIKSGGDVLSLTVISVS  104 (373)
Q Consensus        85 ~~~~i~~~g~~v~l~V~r~~  104 (373)
                      +...++..+..++++|.|..
T Consensus        86 ~~~~l~~~~~~v~l~v~r~~  105 (125)
T 3hpk_A           86 VAKMIQEVKGEVTIHYNKLQ  105 (125)
T ss_dssp             HHHHHHHSCSEEEEEEEEEC
T ss_pred             HHHHHHcCCCeEEEEEEECC
Confidence            99999997778999998743

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=99.37  E-value=4.4e-12  Score=105.87  Aligned_cols=88  Identities=31%  Similarity=0.474  Sum_probs=74.9

Q ss_pred             CCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHH
Q psy2827           6 QTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQ   84 (373)
Q Consensus         6 ~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~   84 (373)
                      .....+|+|.|++.+|||++.++...            ..+++|..|.++|||+++| |++||+|++|||+++.+++|.+
T Consensus        16 ~g~~~~v~l~~~~~g~G~~i~g~~~~------------~~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~   83 (129)
T 2kpk_A           16 KGKFIHTKLRKSSRGFGFTVVGGDEP------------DEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQ   83 (129)
T ss_dssp             CSEEEEEEEEECSSCCSEEEEEEEET------------TEEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHH
T ss_pred             CCcEEEEEEEECCCcccEEEeCccCC------------CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHH
Confidence            34556789999999999999986321            1245899999999999999 9999999999999999888999


Q ss_pred             HHHHHHhC--CCeEEEEEEecCc
Q psy2827          85 VVELIKSG--GDVLSLTVISVSP  105 (373)
Q Consensus        85 ~~~~i~~~--g~~v~l~V~r~~~  105 (373)
                      +..+++..  ++.+.|+|.|..+
T Consensus        84 ~~~~l~~~~~g~~v~l~v~R~~~  106 (129)
T 2kpk_A           84 VVKIFQSIPIGASVDLELCRGYP  106 (129)
T ss_dssp             HHHHHHHSCTTEEEEEEEEECSC
T ss_pred             HHHHHHhCCCCCeEEEEEEeCCC
Confidence            99999984  8899999998643

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A

Probab=99.37  E-value=2.5e-12  Score=104.07  Aligned_cols=89  Identities=24%  Similarity=0.348  Sum_probs=74.0

Q ss_pred             CCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHH
Q psy2827           6 QTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHK   83 (373)
Q Consensus         6 ~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~   83 (373)
                      ...+++|+|.|.+ .+|||++.++.+.          ...++++|..|.++|||+++| |++||+|++|||+++.+++|+
T Consensus         3 ~~~~~~v~l~k~~~~~lG~~i~g~~~~----------~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~   72 (108)
T 3cbz_A            3 HMNIITVTLNMEKYNFLGISIVGQSNE----------RGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSND   72 (108)
T ss_dssp             -CCEEEEEECHHHHCCCCEEEEEECSS----------TTCCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHH
T ss_pred             CceEEEEEEEeCCCCccCEEEEcCcCC----------CCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHH
Confidence            3478899999864 7899999986421          112456899999999999999 999999999999999999999


Q ss_pred             HHHHHHHhC---CCeEEEEEEecC
Q psy2827          84 QVVELIKSG---GDVLSLTVISVS  104 (373)
Q Consensus        84 ~~~~~i~~~---g~~v~l~V~r~~  104 (373)
                      ++..+++..   +..+.|+|.|..
T Consensus        73 ~~~~~l~~~~~~~~~v~l~v~R~~   96 (108)
T 3cbz_A           73 DAVRVLRDIVHKPGPIVLTVAKSG   96 (108)
T ss_dssp             HHHHHHHHHHTSSSCEEEEEECCC
T ss_pred             HHHHHHHhcccCCCeEEEEEEeCC
Confidence            999999874   557999998753

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}

Probab=99.37  E-value=4.1e-12  Score=105.77  Aligned_cols=91  Identities=23%  Similarity=0.342  Sum_probs=76.9

Q ss_pred             CCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcC-CCCH
Q psy2827           6 QTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVE-GATH   82 (373)
Q Consensus         6 ~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~-~~s~   82 (373)
                      +..+++|++.|+. .+|||++.++.+...         ...+++|..|.++|||+++| |++||+|++|||+++. ++++
T Consensus        23 ~~~~~~v~l~k~~~~~lG~~i~g~~~~~~---------~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~   93 (128)
T 2db5_A           23 GRQIEYIDIERPSTGGLGFSVVALRSQNL---------GKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISH   93 (128)
T ss_dssp             TCEEEEEEEECCSSSCCCCEEEEEECSSS---------SCEEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCH
T ss_pred             cCceEEEEEEECCCCccCEEEecccCCCC---------CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCH
Confidence            4567899999997 689999988643211         12356899999999999999 9999999999999997 8889


Q ss_pred             HHHHHHHHhCCCeEEEEEEecCc
Q psy2827          83 KQVVELIKSGGDVLSLTVISVSP  105 (373)
Q Consensus        83 ~~~~~~i~~~g~~v~l~V~r~~~  105 (373)
                      .++..+++..+..+.|+|.|...
T Consensus        94 ~~~~~~l~~~~~~v~l~v~r~~~  116 (128)
T 2db5_A           94 QQAIALLQQTTGSLRLIVAREPV  116 (128)
T ss_dssp             HHHHHHHHHCCSEEEEEEEECCC
T ss_pred             HHHHHHHHcCCCeEEEEEEcCCC
Confidence            99999999888999999998644

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.37  E-value=2.1e-12  Score=105.82  Aligned_cols=99  Identities=26%  Similarity=0.403  Sum_probs=79.9

Q ss_pred             CCCCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCC
Q psy2827           4 TQQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGAT   81 (373)
Q Consensus         4 ~~~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s   81 (373)
                      ..+..+++|+|.|+. .+|||++.++.+.+..   +.......+++|..|.++|||+++| |++||+|++|||+++.+.+
T Consensus        11 ~~~~~~~~v~l~k~~~~~lG~~i~gg~~~~~~---~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~   87 (117)
T 2ehr_A           11 SHWGPPRIVEIFREPNVSLGISIVGGQTVIKR---LKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNAS   87 (117)
T ss_dssp             SCBCCCEEEEECCCSSSCCCEEECCCCSCCCS---SCCCSCCCSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCC
T ss_pred             ccCCCCEEEEEEeCCCCccCEEEeCCcccccc---cccCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCC
Confidence            456688999999995 7899999887543110   0001113466899999999999999 9999999999999999999


Q ss_pred             HHHHHHHHHhCCCeEEEEEEecCc
Q psy2827          82 HKQVVELIKSGGDVLSLTVISVSP  105 (373)
Q Consensus        82 ~~~~~~~i~~~g~~v~l~V~r~~~  105 (373)
                      +.++...++..++.+.|+|.|...
T Consensus        88 ~~~~~~~~~~~g~~v~l~v~r~~~  111 (117)
T 2ehr_A           88 HSEAVEAIKNAGNPVVFIVQSLSS  111 (117)
T ss_dssp             HHHHHHHHHTSCSSEEEEECCBSC
T ss_pred             HHHHHHHHHcCCCeEEEEEEECCC
Confidence            999999999888999999987543

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=3.7e-13  Score=111.98  Aligned_cols=101  Identities=33%  Similarity=0.491  Sum_probs=78.3

Q ss_pred             CCCCCCcEEEEEEcCCCCccEEEEecccC-----------CCcccccccc-----ccCCceEEEEecCCCHHHHcCCCCC
Q psy2827           3 STQQTGPREVQIAKSDTGFGFNVRGQVSE-----------GGQLRSINGE-----LYAPLQHVSAVLAGGAAEKAGIRKG   66 (373)
Q Consensus         3 ~~~~~~~r~v~l~r~~~g~Gfsi~g~~~~-----------~~~~~~~g~~-----~~~p~~~V~~V~~gspA~~aGL~~G   66 (373)
                      +.+++.||+|+|.|+..+|||++.+....           ...-..+++.     +...+++|..|.++|||+++||++|
T Consensus         3 ~~~~~~~r~v~l~r~~~g~Gf~l~~~t~y~~~~~~~~~~~~~~~G~~~G~~~~~~~~~~gv~V~~V~~~spA~~aGL~~G   82 (126)
T 2yuy_A            3 SGSSGGPKTVTLKRTSQGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQVKEGGPAFEAGLCTG   82 (126)
T ss_dssp             CSCSSSCCCEEEECCSSSCSCCBCCCCCCCCSSCCCSCSSSCCCCSCCCTTSCCCCCCCCCCBCCCCSSSHHHHHTCCSS
T ss_pred             CCCCCCCEEEEEEECCCCcceeecCccccCCHHHHHHHHHhhcCcceeceeeecccCCCCEEEEEECCCChHHHcCCCCC
Confidence            45678899999999999999999862100           0000112211     0113457999999999999999999


Q ss_pred             CEEEEECCEEcCCCCHHHHHHHHHhCCCeEEEEEEec
Q psy2827          67 DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISV  103 (373)
Q Consensus        67 D~Il~InG~~v~~~s~~~~~~~i~~~g~~v~l~V~r~  103 (373)
                      |+|++|||+++.+++++++..+++..+..+.|+|.|.
T Consensus        83 D~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~  119 (126)
T 2yuy_A           83 DRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVMPK  119 (126)
T ss_dssp             CCCCEETTEECSSCCHHHHHHHHHTCTTEEEEECCCC
T ss_pred             CEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEEC
Confidence            9999999999997779999999998889999998764

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}

Probab=99.36  E-value=3.7e-12  Score=98.82  Aligned_cols=82  Identities=30%  Similarity=0.473  Sum_probs=67.9

Q ss_pred             CCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHH
Q psy2827           7 TGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVV   86 (373)
Q Consensus         7 ~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~   86 (373)
                      +..++|+|.|++.+|||++.+..+             ..+++|..+ ++|||+ +||++||+|++|||.++.+++++++.
T Consensus         2 ~~~~~v~l~k~~~g~G~~~~~~~~-------------~~~~~v~~v-~~spA~-aGl~~GD~I~~vng~~v~~~~~~~~~   66 (88)
T 3bpu_A            2 MELITVHIVKGPMGFGFTIADSPG-------------GGGQRVKQI-VDSPRS-RGLKEGDLIVEVNKKNVQALTHNQVV   66 (88)
T ss_dssp             EEEEEEEEECBTTBSSCEEEECTT-------------SSSEEEEEC-CC--CC-TTCCTTCEEEEETTEECTTSCHHHHH
T ss_pred             CcEEEEEEEcCCCceeEEEEecCC-------------CCcEEEEEe-cCChhH-hCCCCCCEEEEECCEEcCCCCHHHHH
Confidence            356889999999999999987532             124467776 999999 99999999999999999998889999


Q ss_pred             HHHHh--CCCeEEEEEEec
Q psy2827          87 ELIKS--GGDVLSLTVISV  103 (373)
Q Consensus        87 ~~i~~--~g~~v~l~V~r~  103 (373)
                      ..+++  .++.+.++|.|.
T Consensus        67 ~~l~~~~~g~~v~l~v~R~   85 (88)
T 3bpu_A           67 DMLVESPKGSEVTLLVQRQ   85 (88)
T ss_dssp             HHHHTSCTTCEEEEEEEEE
T ss_pred             HHHHhCCCCCEEEEEEEeC
Confidence            99985  588999999874

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=99.36  E-value=2.4e-12  Score=104.72  Aligned_cols=91  Identities=23%  Similarity=0.367  Sum_probs=75.6

Q ss_pred             CcEEEEEEcCCCCccEEEEec---ccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHH
Q psy2827           8 GPREVQIAKSDTGFGFNVRGQ---VSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHK   83 (373)
Q Consensus         8 ~~r~v~l~r~~~g~Gfsi~g~---~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~   83 (373)
                      ..++|++.|++.+|||++.+.   .+..         ....+++|..|.++|||+++| |++||+|++|||.++.++++.
T Consensus         4 ~~~~v~l~k~~~glG~~l~~~~~~~~~~---------~~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~   74 (113)
T 2g5m_B            4 ELFPVELEKDSEGLGISIIGMGAGADMG---------LEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQS   74 (113)
T ss_dssp             EEEEEECCCCSSCCCCEEEEEECCCCSS---------SCCEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHH
T ss_pred             EEEEEEEEeCCCCCCEEEEecCCCCcCC---------CCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHH
Confidence            356788889999999999882   1110         012356899999999999999 999999999999999988899


Q ss_pred             HHHHHHHhCCCeEEEEEEecCccc
Q psy2827          84 QVVELIKSGGDVLSLTVISVSPEE  107 (373)
Q Consensus        84 ~~~~~i~~~g~~v~l~V~r~~~~~  107 (373)
                      ++...++..++.+.++|.|..+..
T Consensus        75 ~~~~~~~~~g~~v~l~v~R~~~~~   98 (113)
T 2g5m_B           75 FAASVLRNTKGRVRFMIGRERPGE   98 (113)
T ss_dssp             HHHHHHHHSCSSCEEEEEECCCCT
T ss_pred             HHHHHHhcCCCeEEEEEEeCCCCC
Confidence            999999988899999999866543

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=99.36  E-value=8.8e-12  Score=98.08  Aligned_cols=84  Identities=21%  Similarity=0.385  Sum_probs=72.8

Q ss_pred             CCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHH
Q psy2827           6 QTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQ   84 (373)
Q Consensus         6 ~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~   84 (373)
                      ...++.|.|.|+.++|||+|.++.              ...++|+++.+||+|++.| |.+||.|++|||+++.+++|.+
T Consensus         3 ~g~~k~V~l~K~~~~LG~tI~~~g--------------~g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~e   68 (95)
T 3gge_A            3 KGIEKEVNVYKSEDSLGLTITDNG--------------VGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYD   68 (95)
T ss_dssp             CEEEEEEEEECCSSCCCEEEECSS--------------SSCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHH
T ss_pred             CCeEEEEEEEECCCCceEEEEcCC--------------CCcEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHH
Confidence            456789999999999999998641              1124799999999999999 9999999999999999999999


Q ss_pred             HHHHHHh--CCCeEEEEEEec
Q psy2827          85 VVELIKS--GGDVLSLTVISV  103 (373)
Q Consensus        85 ~~~~i~~--~g~~v~l~V~r~  103 (373)
                      +++++++  .|.+++|++.+.
T Consensus        69 vv~lLk~~~~g~~~~L~lv~p   89 (95)
T 3gge_A           69 VAKKLKELKKEELFTMKLIEP   89 (95)
T ss_dssp             HHHHHHHSCTTCEEEEEEEEE
T ss_pred             HHHHHHhCCCCCEEEEEEECc
Confidence            9999999  477888887763

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=99.36  E-value=9.7e-12  Score=97.07  Aligned_cols=83  Identities=27%  Similarity=0.335  Sum_probs=70.0

Q ss_pred             cEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHH
Q psy2827           9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVEL   88 (373)
Q Consensus         9 ~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~   88 (373)
                      ++++++. ++.+|||++.++.+.            ..+++|..|.++|||+++||++||+|++|||.++.++++.++...
T Consensus         4 ~~~v~~~-~~~~~G~~l~~~~~~------------~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~   70 (91)
T 2pkt_A            4 TQQIDLQ-GPGPWGFRLVGGKDF------------EQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNR   70 (91)
T ss_dssp             EEEEEEE-SSSCCSEEEEEEGGG------------TEEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             cEEEEEC-CCCCCCEEEEccCCC------------CCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            4566666 447899999886432            124579999999999999999999999999999999888899999


Q ss_pred             HHhCCCeEEEEEEecC
Q psy2827          89 IKSGGDVLSLTVISVS  104 (373)
Q Consensus        89 i~~~g~~v~l~V~r~~  104 (373)
                      ++..++.+.++|.|..
T Consensus        71 l~~~g~~v~l~v~R~g   86 (91)
T 2pkt_A           71 IKGCTDNLTLTVARSE   86 (91)
T ss_dssp             HHTCSSEEEEEEEEEC
T ss_pred             HHcCCCeEEEEEEECC
Confidence            9988899999998854

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}

Probab=99.36  E-value=3.9e-12  Score=104.16  Aligned_cols=91  Identities=25%  Similarity=0.388  Sum_probs=76.3

Q ss_pred             CCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcC-CCCH
Q psy2827           6 QTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVE-GATH   82 (373)
Q Consensus         6 ~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~-~~s~   82 (373)
                      ...+++|+|.|+. .+|||++.++.....         ...+++|..|.++|||+++| |++||+|++|||.++. ++++
T Consensus        18 ~~~~~~v~l~k~~~~~lG~~i~~~~~~~~---------~~~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~   88 (117)
T 2o2t_A           18 GRHVEVFELLKPPSGGLGFSVVGLRSENR---------GELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITH   88 (117)
T ss_dssp             TSCEEEEEEECCSSSCSSCCEEEEECCC-----------CEEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCH
T ss_pred             CCeEEEEEEEECCCCCCCEEEeecccCCC---------CCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCCH
Confidence            4678999999985 789999988743210         12356899999999999999 9999999999999998 7779


Q ss_pred             HHHHHHHHhCCCeEEEEEEecCc
Q psy2827          83 KQVVELIKSGGDVLSLTVISVSP  105 (373)
Q Consensus        83 ~~~~~~i~~~g~~v~l~V~r~~~  105 (373)
                      .++..+++..++.+.++|.|...
T Consensus        89 ~~~~~~l~~~~~~v~l~v~R~~~  111 (117)
T 2o2t_A           89 QQAISILQKAKDTVQLVIARGSL  111 (117)
T ss_dssp             HHHHHHHHHCCSEEEEEEESSCC
T ss_pred             HHHHHHHHcCCCEEEEEEEeCCc
Confidence            99999999888999999987543

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=99.36  E-value=1.2e-11  Score=100.18  Aligned_cols=94  Identities=29%  Similarity=0.510  Sum_probs=78.0

Q ss_pred             CCCCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCC
Q psy2827           2 YSTQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGA   80 (373)
Q Consensus         2 ~~~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~   80 (373)
                      +++.......+++.++..+|||++.+....      .++   ..+++|..|.++|||+++| |++||+|++|||+++.++
T Consensus         5 ~~~~~~~~~~~~l~~~~~glG~~~~~~~~~------~~~---~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~   75 (111)
T 2koj_A            5 NTKKVGKRLNIQLKKGTEGLGFSITSRDVT------IGG---SAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGK   75 (111)
T ss_dssp             CCSSSCEEEEEEEECBTTBTCEEEEECSCS------SSS---SSCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTS
T ss_pred             cCcccCcEEEEEEEECCCccCEEEEeccCC------CCC---CcCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCC
Confidence            456666778889999999999999976321      011   1346899999999999999 999999999999999988


Q ss_pred             CHHHHHHHHHhC--CCeEEEEEEecC
Q psy2827          81 THKQVVELIKSG--GDVLSLTVISVS  104 (373)
Q Consensus        81 s~~~~~~~i~~~--g~~v~l~V~r~~  104 (373)
                      ++.++..+++..  +..+.++|.|..
T Consensus        76 ~~~~~~~~l~~~~~g~~v~l~v~R~~  101 (111)
T 2koj_A           76 SQEEVVSLLRSTKMEGTVSLLVFRQE  101 (111)
T ss_dssp             CHHHHHHHHHHCCCSSEEEEEEEECC
T ss_pred             CHHHHHHHHHhCCCCCeEEEEEEeCC
Confidence            899999999873  889999998854

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.36  E-value=5.6e-12  Score=102.21  Aligned_cols=84  Identities=27%  Similarity=0.552  Sum_probs=73.8

Q ss_pred             CcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHH
Q psy2827           8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVV   86 (373)
Q Consensus         8 ~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~   86 (373)
                      .++.|++.|++.+|||++.+..+              .+++|..|.++|||+++| |++||+|++|||+++.++++.++.
T Consensus        15 ~~~~v~l~~~~~~lG~~l~~~~~--------------~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~   80 (111)
T 2dlu_A           15 HVEEVELINDGSGLGFGIVGGKT--------------SGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVA   80 (111)
T ss_dssp             EEEEEEEECCSSCCCEEEECCSS--------------SSBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHH
T ss_pred             ceEEEEEEeCCCccCEEEeccCC--------------CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHH
Confidence            56889999999999999987632              235899999999999999 999999999999999988899999


Q ss_pred             HHHHhCCCeEEEEEEecCc
Q psy2827          87 ELIKSGGDVLSLTVISVSP  105 (373)
Q Consensus        87 ~~i~~~g~~v~l~V~r~~~  105 (373)
                      .+++..++.+.++|.|...
T Consensus        81 ~~l~~~g~~v~l~v~R~~~   99 (111)
T 2dlu_A           81 QVLRNCGNSVRMLVARDPA   99 (111)
T ss_dssp             HHHHHHCSEEEEEEEESCT
T ss_pred             HHHHhCCCeEEEEEEeCCC
Confidence            9998878899999988544

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.36  E-value=5.4e-12  Score=102.93  Aligned_cols=97  Identities=28%  Similarity=0.529  Sum_probs=77.6

Q ss_pred             CCCCCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHH-cCCCCCCEEEEECCEEcCCC
Q psy2827           3 STQQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEK-AGIRKGDRILAVNNVNVEGA   80 (373)
Q Consensus         3 ~~~~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~-aGL~~GD~Il~InG~~v~~~   80 (373)
                      ++....+++|++.|.+ .+|||++.+......    .|.....| ++|..|.++|||++ +||++||+|++|||+++.++
T Consensus         5 ~~~~~~~~~v~l~~~~~~~lGf~l~~~~~~~~----~g~~~~~~-~~V~~V~~~spA~~~agL~~GD~I~~ing~~v~~~   79 (114)
T 1uew_A            5 SSGSLQTSDVVIHRKENEGFGFVIISSLNRPE----SGSTITVP-HKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINM   79 (114)
T ss_dssp             CSCCCCCEEEEEECCTTSCCCEEEECCCCSCC----SSCCSCCS-CEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTS
T ss_pred             CCCcccceEEEEEECCCCCCCEEEEeecccCC----CCcccccC-eEEEEECCCChHHHhCCCCCCCEEEEECCEECCCC
Confidence            3456678999999864 689999988643211    01111123 37999999999999 99999999999999999998


Q ss_pred             CHHHHHHHHHhCCCeEEEEEEecC
Q psy2827          81 THKQVVELIKSGGDVLSLTVISVS  104 (373)
Q Consensus        81 s~~~~~~~i~~~g~~v~l~V~r~~  104 (373)
                      +++++..+++..+..+.|+|.|..
T Consensus        80 ~~~~~~~~l~~~g~~v~l~v~r~~  103 (114)
T 1uew_A           80 PHADIVKLIKDAGLSVTLRIIPQE  103 (114)
T ss_dssp             CHHHHHHHHHHTTTEEEEEECCCS
T ss_pred             CHHHHHHHHHcCCCeEEEEEEeCC
Confidence            899999999988899999998743

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A

Probab=99.36  E-value=1e-11  Score=101.42  Aligned_cols=86  Identities=22%  Similarity=0.364  Sum_probs=71.7

Q ss_pred             CCCCcEEEEEEcCCCC-ccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCH
Q psy2827           5 QQTGPREVQIAKSDTG-FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATH   82 (373)
Q Consensus         5 ~~~~~r~v~l~r~~~g-~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~   82 (373)
                      ++..+++|++.|+..+ |||++.++...            .++++|..|.++|||+++| |++||+|++|||.++.+.++
T Consensus        21 q~~~~~~V~l~~~~~~~lG~~l~~~~~~------------~~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~   88 (114)
T 2gzv_A           21 QSMVPGKVTLQKDAQNLIGISIGGGAQY------------CPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTK   88 (114)
T ss_dssp             -CCCCEEEEEECCTTSCCSEEEEECCC--------------CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCH
T ss_pred             ccCCCEEEEEEECCCCcEeEEEEeCCCC------------CCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCH
Confidence            4457899999999865 99999876321            2346899999999999999 99999999999999966679


Q ss_pred             HHHHHHHHhCCCeEEEEEEe
Q psy2827          83 KQVVELIKSGGDVLSLTVIS  102 (373)
Q Consensus        83 ~~~~~~i~~~g~~v~l~V~r  102 (373)
                      +++..+++..+..+.++|.+
T Consensus        89 ~~~~~~l~~~~~~v~l~v~~  108 (114)
T 2gzv_A           89 VEVAKMIQEVKGEVTIHYNK  108 (114)
T ss_dssp             HHHHHHHHHCCSEEEEEEEC
T ss_pred             HHHHHHHHcCCCeEEEEEEe
Confidence            99999998866778888865

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A

Probab=99.36  E-value=6.5e-12  Score=104.69  Aligned_cols=98  Identities=26%  Similarity=0.399  Sum_probs=78.2

Q ss_pred             CCCCCcEEEEEEcCC--CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCC
Q psy2827           4 TQQTGPREVQIAKSD--TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGA   80 (373)
Q Consensus         4 ~~~~~~r~v~l~r~~--~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~   80 (373)
                      ..+..++.|++.|++  .+|||++.+..+.  ....+|.. ..++++|..|.++|||+++| |++||+|++|||.++.+.
T Consensus        25 ~~~~~~r~v~l~k~~~~~~lG~~i~~~~~~--~~~~~g~~-~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~  101 (128)
T 1nf3_C           25 ILPETHRRVRLCKYGTEKPLGFYIRDGSSV--RVTPHGLE-KVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGK  101 (128)
T ss_dssp             TSCTTCEEEEECCSSTTSCCCEEEEEEEEE--EEETTEEE-EEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTC
T ss_pred             cCCCccEEEEEEECCCCCCccEEEEccccc--cccccccC-CCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCC
Confidence            456788999999994  6899999876431  01111211 12457899999999999999 999999999999999888


Q ss_pred             CHHHHHHHHHhCCCeEEEEEEecC
Q psy2827          81 THKQVVELIKSGGDVLSLTVISVS  104 (373)
Q Consensus        81 s~~~~~~~i~~~g~~v~l~V~r~~  104 (373)
                      +++++..+++..+..+.++|.|..
T Consensus       102 ~~~~~~~~l~~~~~~v~l~v~r~~  125 (128)
T 1nf3_C          102 SLDQVTDMMIANSRNLIITVRPAN  125 (128)
T ss_dssp             CHHHHHHHHHHTTTSEEEEEECCC
T ss_pred             CHHHHHHHHHcCCCeEEEEEEECC
Confidence            899999999987778999998743

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A

Probab=99.35  E-value=9.6e-12  Score=98.32  Aligned_cols=90  Identities=18%  Similarity=0.267  Sum_probs=75.4

Q ss_pred             CCCCCCCcEEEEEEcC-CCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCC
Q psy2827           2 YSTQQTGPREVQIAKS-DTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEG   79 (373)
Q Consensus         2 ~~~~~~~~r~v~l~r~-~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~   79 (373)
                      +++......++++.++ ..++||++.+.               ..+++|..|.++|||+++| |++||+|++|||+++.+
T Consensus         2 ~~~~~~~~~~v~l~~~~~~glG~~~~~~---------------~~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~   66 (96)
T 2qkv_A            2 IPRNSLEKFNVDLMKKAGKELGLSLSPN---------------EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEG   66 (96)
T ss_dssp             CCCCCCCCEEEEEECBTTBCCCEEEEEC---------------SSSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTT
T ss_pred             CChHHCceEEEEEEeCCCCCccEEEEeC---------------CCcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCC
Confidence            4566677788999764 56899998763               1245899999999999999 99999999999999998


Q ss_pred             CCHHHHHHHHHhCCCeEEEEEEecCcc
Q psy2827          80 ATHKQVVELIKSGGDVLSLTVISVSPE  106 (373)
Q Consensus        80 ~s~~~~~~~i~~~g~~v~l~V~r~~~~  106 (373)
                      .++.++...++..++.+.++|.|..|.
T Consensus        67 ~~~~~~~~~~~~~~~~v~l~v~R~~p~   93 (96)
T 2qkv_A           67 LPFQVSYALFKGANGKVSMEVTRPKPA   93 (96)
T ss_dssp             CCHHHHHHHHHTCSSEEEEEEECCCC-
T ss_pred             CCHHHHHHHHhcCCCcEEEEEEeCCcc
Confidence            889999999888878899999986554

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}

Probab=99.35  E-value=7.8e-12  Score=103.91  Aligned_cols=89  Identities=34%  Similarity=0.509  Sum_probs=76.6

Q ss_pred             CCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHH
Q psy2827           4 TQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHK   83 (373)
Q Consensus         4 ~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~   83 (373)
                      .....+|++++.++..+|||++.+...             .++++|..|.++|||+++||++||+|++|||.++.++++.
T Consensus         5 ~~~~~~r~v~l~~~~~g~G~~l~~~~~-------------~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~   71 (128)
T 2kjd_A            5 FTMLRPRLCTMKKGPSGYGFNLHSDKS-------------KPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHG   71 (128)
T ss_dssp             TTTCCCEEEEEECCSSSCCEEEEECSS-------------SCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHH
T ss_pred             CCCCCcEEEEEecCCCcccEEEEecCC-------------CCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHH
Confidence            356689999999999999999987632             2345899999999999999999999999999999999999


Q ss_pred             HHHHHHHh-CCCeEEEEEEecCc
Q psy2827          84 QVVELIKS-GGDVLSLTVISVSP  105 (373)
Q Consensus        84 ~~~~~i~~-~g~~v~l~V~r~~~  105 (373)
                      ++..+++. .+..+.+++.|.+.
T Consensus        72 ~~~~~l~~~~~~~~~l~v~R~g~   94 (128)
T 2kjd_A           72 DVVSAIRAGGDETKLLVVDRETD   94 (128)
T ss_dssp             HHHHHHHTTCSEEEEEEECHHHH
T ss_pred             HHHHHHHhCCCCEEEEEEEeCCc
Confidence            99999998 56777888877543

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}

Probab=99.35  E-value=8.6e-12  Score=99.51  Aligned_cols=91  Identities=23%  Similarity=0.433  Sum_probs=74.4

Q ss_pred             CCCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHH-cCCCCCCEEEEECCEEcCCCCH
Q psy2827           5 QQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEK-AGIRKGDRILAVNNVNVEGATH   82 (373)
Q Consensus         5 ~~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~-aGL~~GD~Il~InG~~v~~~s~   82 (373)
                      .+...+.|++.|.. .+|||++.+...         + ...|+++|..|.++|||++ +||++||+|++|||+++.+.++
T Consensus         6 ~~~~~~~v~l~k~~g~~lG~~i~~~~~---------~-~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~   75 (101)
T 2yt7_A            6 SGDNCREVHLEKRRGEGLGVALVESGW---------G-SLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPL   75 (101)
T ss_dssp             TTCCCEEEEEECCTTCCCCEEEEECCC---------S-SSSCCEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCH
T ss_pred             CCCceEEEEEEeCCCCccCEEEEeCCC---------C-CCccCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            45567889999776 689999975311         0 1134568999999999999 5699999999999999977779


Q ss_pred             HHHHHHHHh--CCCeEEEEEEecCc
Q psy2827          83 KQVVELIKS--GGDVLSLTVISVSP  105 (373)
Q Consensus        83 ~~~~~~i~~--~g~~v~l~V~r~~~  105 (373)
                      +++.++++.  .++.++|+|.|..|
T Consensus        76 ~~~~~~l~~~~~g~~v~l~v~R~~p  100 (101)
T 2yt7_A           76 AACQAAVRETKSQTSVTLSIVHCPP  100 (101)
T ss_dssp             HHHHHHHHHTTTSSEEEEEECCCCC
T ss_pred             HHHHHHHHhCCCCCeEEEEEEeCCC
Confidence            999999997  68999999988654

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.35  E-value=9.5e-13  Score=106.86  Aligned_cols=98  Identities=31%  Similarity=0.432  Sum_probs=78.2

Q ss_pred             CCCCCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCC
Q psy2827           3 STQQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGA   80 (373)
Q Consensus         3 ~~~~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~   80 (373)
                      +|.|+..++|+|.|+. .+|||++.++.+...  .... .....+++|..|.++|||+++| |++||+|++|||+++.++
T Consensus         4 ~p~~~~~~~v~l~k~~~~~lG~~i~gg~~~~~--~~~~-~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~   80 (111)
T 1uju_A            4 GSSGPGLRELCIQKAPGERLGISIRGGARGHA--GNPR-DPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGL   80 (111)
T ss_dssp             SCCSCSSSCEEEECCTTCCCCEEEECCSSSSC--SCSS-CTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTS
T ss_pred             CCCCCccEEEEEEECCCCccCEEEECCccccc--cccc-cCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCC
Confidence            4567778899999987 789999998743210  0000 0112356899999999999999 999999999999999988


Q ss_pred             CHHHHHHHHHhCCCeEEEEEEec
Q psy2827          81 THKQVVELIKSGGDVLSLTVISV  103 (373)
Q Consensus        81 s~~~~~~~i~~~g~~v~l~V~r~  103 (373)
                      ++.++..+++..+..+.++|.|.
T Consensus        81 ~~~~~~~~l~~~g~~v~l~v~r~  103 (111)
T 1uju_A           81 THGEAVQLLRSVGDTLTVLVCDG  103 (111)
T ss_dssp             CHHHHHHHHSSCSSEEEECCCCC
T ss_pred             CHHHHHHHHHcCCCeEEEEEEEC
Confidence            89999999988889999988764

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.34  E-value=1.1e-11  Score=101.03  Aligned_cols=82  Identities=29%  Similarity=0.523  Sum_probs=72.1

Q ss_pred             CcEEEEEEcCCC-CccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCC-CCCCEEEEECCEEcCCCCHHHH
Q psy2827           8 GPREVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGI-RKGDRILAVNNVNVEGATHKQV   85 (373)
Q Consensus         8 ~~r~v~l~r~~~-g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL-~~GD~Il~InG~~v~~~s~~~~   85 (373)
                      ..++|++.|+.. +|||++.+.               ..+++|..|.++|||+++|| ++||+|++|||+++.+++++++
T Consensus        25 ~~~~v~l~k~~~~~lG~~i~~~---------------~~gv~V~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~~~~~   89 (113)
T 1va8_A           25 TVKIVRIEKARDIPLGATVRNE---------------MDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEV   89 (113)
T ss_dssp             ECEEEEEEECTTCCCCEEEEEC---------------SSSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHH
T ss_pred             ceEEEEEEeCCCCceeEEEEeC---------------CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHH
Confidence            568899999987 999999875               13458999999999999998 9999999999999998889999


Q ss_pred             HHHHHhCCCeEEEEEEecC
Q psy2827          86 VELIKSGGDVLSLTVISVS  104 (373)
Q Consensus        86 ~~~i~~~g~~v~l~V~r~~  104 (373)
                      ..+++..+..+.++|.|..
T Consensus        90 ~~~l~~~~~~v~l~v~r~~  108 (113)
T 1va8_A           90 FDLLSDMHGTLTFVLIPSS  108 (113)
T ss_dssp             HHHHHHCCEEEEEEEECCC
T ss_pred             HHHHHcCCCeEEEEEEECC
Confidence            9999887778999988644

>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A

Probab=99.34  E-value=1.1e-11  Score=99.18  Aligned_cols=93  Identities=27%  Similarity=0.391  Sum_probs=71.5

Q ss_pred             EEEEEEcCCC----CccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHH
Q psy2827          10 REVQIAKSDT----GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQV   85 (373)
Q Consensus        10 r~v~l~r~~~----g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~   85 (373)
                      +.+++.+...    +|||++.++.+.......++......+++|..|.++|||+++||++||+|++|||.++.+.+|+++
T Consensus         6 ~~i~~~~~~~~~~~~lG~~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~   85 (104)
T 3sfj_A            6 QRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQA   85 (104)
T ss_dssp             EEEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHH
T ss_pred             EEEEEEEccCCCCCcccEEEECccccCccccccccCCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHH
Confidence            4566665442    499999977543211112222233456789999999999999999999999999999999889999


Q ss_pred             HHHHHh-CCCeEEEEEEe
Q psy2827          86 VELIKS-GGDVLSLTVIS  102 (373)
Q Consensus        86 ~~~i~~-~g~~v~l~V~r  102 (373)
                      ...++. .++.+.++|.|
T Consensus        86 ~~~l~~~~g~~v~l~v~R  103 (104)
T 3sfj_A           86 RKRLTKRSEEVVRLLVTR  103 (104)
T ss_dssp             HHHHTCTTCSEEEEEEEE
T ss_pred             HHHHHhCCCCEEEEEEEc
Confidence            999986 67899999876

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A

Probab=99.34  E-value=1.4e-11  Score=97.02  Aligned_cols=89  Identities=25%  Similarity=0.338  Sum_probs=71.4

Q ss_pred             cEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHH
Q psy2827           9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVEL   88 (373)
Q Consensus         9 ~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~   88 (373)
                      ..+|++.+++ +|||++.++.+..+..    ......+++|..|.++|||++ ||++||+|++|||+++.++++.++...
T Consensus         4 ~~~v~l~~~~-~lG~~i~gg~~~~~~p----~~~~~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~~~~~~   77 (95)
T 1mfg_A            4 EIRVRVEKDP-ELGFSISGGVGGRGNP----FRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSL   77 (95)
T ss_dssp             EEEEEEECSS-SCSEEEEECBTSCCCS----SSTTCCCEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCBHHHHHHH
T ss_pred             EEEEEECCCC-CCCEEEeCCcCccCCc----cccCCCCEEEEEECCCCchhh-CCCCCCEEEEECCEEcCCCCHHHHHHH
Confidence            4567778776 8999999875321100    011234568999999999999 999999999999999999899999999


Q ss_pred             HHhCCCeEEEEEEec
Q psy2827          89 IKSGGDVLSLTVISV  103 (373)
Q Consensus        89 i~~~g~~v~l~V~r~  103 (373)
                      ++..++.+.++|.|.
T Consensus        78 ~~~~~~~v~l~v~R~   92 (95)
T 1mfg_A           78 LKTFQNTVELIIVRE   92 (95)
T ss_dssp             HHHCCSEEEEEEEEE
T ss_pred             hhcCCCeEEEEEEeC
Confidence            988889999999874

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.34  E-value=2.4e-11  Score=98.29  Aligned_cols=95  Identities=26%  Similarity=0.409  Sum_probs=76.5

Q ss_pred             CCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHH
Q psy2827           4 TQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHK   83 (373)
Q Consensus         4 ~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~   83 (373)
                      ..+....++.+.++..+|||++.++.+...      ......+++|..|.++|||+++||++||+|++|||+++.+.++.
T Consensus        11 ~~~~~~~~~~l~~~~~glG~~i~~g~~~~~------~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~   84 (110)
T 1x5q_A           11 RIEEEELTLTILRQTGGLGISIAGGKGSTP------YKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHH   84 (110)
T ss_dssp             CCCCEEEEEEEECSSSSCSEEEEECTTSCC------SSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHH
T ss_pred             cCCcceEEEEEecCCCeeeEEEEccccCCc------cccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHH
Confidence            344556778888988899999997643210      00012456899999999999999999999999999999998898


Q ss_pred             HHHHHHHhCCCeEEEEEEecC
Q psy2827          84 QVVELIKSGGDVLSLTVISVS  104 (373)
Q Consensus        84 ~~~~~i~~~g~~v~l~V~r~~  104 (373)
                      ++...++..++.+.|+|.|..
T Consensus        85 ~~~~~~~~~g~~v~l~v~R~g  105 (110)
T 1x5q_A           85 EAVEALRGAGTAVQMRVWRES  105 (110)
T ss_dssp             HHHHHHHSCCSEEEEEEEECS
T ss_pred             HHHHHhhCCCCeEEEEEEECC
Confidence            888888878999999999854

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A

Probab=99.34  E-value=7.3e-12  Score=99.47  Aligned_cols=83  Identities=27%  Similarity=0.387  Sum_probs=69.9

Q ss_pred             CCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHH
Q psy2827           6 QTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHK   83 (373)
Q Consensus         6 ~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~   83 (373)
                      .+-+|.|.|.|.. .++||++....+              .+++|..|.++|||+++| |++||+|++|||.++.+++|+
T Consensus        10 ~~~~~~v~l~K~~~~~lG~~l~~~~~--------------~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~   75 (97)
T 2ejy_A           10 GHMVRLIQFEKVTEEPMGICLKLNEK--------------QSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVD   75 (97)
T ss_dssp             ---CEEEEEEECSSSCCSEEEEECTT--------------CCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSH
T ss_pred             CCccEEEEEEeCCCCCeeEEEEeCCC--------------CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHH
Confidence            4568999999876 589999986421              235899999999999999 999999999999999988899


Q ss_pred             HHHHHHHhCCCeEEEEEEe
Q psy2827          84 QVVELIKSGGDVLSLTVIS  102 (373)
Q Consensus        84 ~~~~~i~~~g~~v~l~V~r  102 (373)
                      ++.++++..++.++++|.+
T Consensus        76 ~~~~~l~~~~~~v~L~V~~   94 (97)
T 2ejy_A           76 QLQKAMKETKGMISLKVIP   94 (97)
T ss_dssp             HHHHHHHHCCEEEEEEEEC
T ss_pred             HHHHHHHcCCCeEEEEEEE
Confidence            9999999877788888864

>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}

Probab=99.33  E-value=1.2e-11  Score=99.60  Aligned_cols=84  Identities=33%  Similarity=0.536  Sum_probs=67.9

Q ss_pred             EEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhC
Q psy2827          14 IAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVELIKSG   92 (373)
Q Consensus        14 l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~~~i~~~   92 (373)
                      +..+..+|||++.++.+...       .+...+++|..|.++|||+++| |++||+|++|||.++.+.+|.++...++..
T Consensus         8 ~~~~~~~~Gf~i~gG~~~~~-------~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~   80 (106)
T 4amh_A            8 VPRGSKGLGFSIAGGVGNQH-------WPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNT   80 (106)
T ss_dssp             ----CCCSCEEEEECTTSCS-------BTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHSC
T ss_pred             CCCCCCccCEEEEeccCCcc-------ccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCC
Confidence            34556789999999854321       1112356899999999999999 999999999999999998999999999988


Q ss_pred             CCeEEEEEEecC
Q psy2827          93 GDVLSLTVISVS  104 (373)
Q Consensus        93 g~~v~l~V~r~~  104 (373)
                      +..+.++|.|..
T Consensus        81 ~~~v~l~v~R~~   92 (106)
T 4amh_A           81 SDFVYLKVAKPG   92 (106)
T ss_dssp             CSEEEEEEECCS
T ss_pred             CCeEEEEEEeCC
Confidence            889999999854

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.33  E-value=2.4e-12  Score=102.84  Aligned_cols=91  Identities=32%  Similarity=0.447  Sum_probs=77.5

Q ss_pred             CCCCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCC
Q psy2827           2 YSTQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGA   80 (373)
Q Consensus         2 ~~~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~   80 (373)
                      +++.....+++++.++..+|||++.++.+.            ..+++|..|.++|||+++| |++||+|++|||+++.++
T Consensus         5 ~~~~~~~~~~v~l~~~~~g~G~~~~~~~~~------------~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~   72 (103)
T 1wfv_A            5 SSGQDFDYFTVDMEKGAKGFGFSIRGGREY------------KMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDM   72 (103)
T ss_dssp             CSCCCSCCEECCEECCTTSSSBCCEEETTT------------TEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSC
T ss_pred             CCccCceEEEEEEecCCCcCCEEEeccccC------------CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCC
Confidence            456667778899999989999999876431            1245799999999999999 999999999999999998


Q ss_pred             CHHHHHHHHHhCCCeEEEEEEecC
Q psy2827          81 THKQVVELIKSGGDVLSLTVISVS  104 (373)
Q Consensus        81 s~~~~~~~i~~~g~~v~l~V~r~~  104 (373)
                      ++.++...++..++.+.++|.|..
T Consensus        73 ~~~~~~~~~~~~g~~v~l~v~R~~   96 (103)
T 1wfv_A           73 THARAIELIKSGGRRVRLLLKRGT   96 (103)
T ss_dssp             CHHHHHHHHHHHCSEECEEEECTT
T ss_pred             CHHHHHHHHHcCCCeEEEEEEECC
Confidence            899999999877889999998743

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}

Probab=99.33  E-value=1.1e-11  Score=100.99  Aligned_cols=83  Identities=30%  Similarity=0.424  Sum_probs=70.5

Q ss_pred             CCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHH
Q psy2827           6 QTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQV   85 (373)
Q Consensus         6 ~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~   85 (373)
                      ....++|+|.|++.||||+|.+..               .+.+|..+.+  +++.|||++||+|++|||+++.+++|+++
T Consensus        10 ~~~~~~V~L~Kg~~G~GFsI~~~~---------------~g~~V~~I~~--~~~~aGL~~GD~Il~VNG~~v~~~~h~ev   72 (113)
T 3soe_A           10 AGLLVTIPLIKGPKGFGFAIADSP---------------TGQKVKMILD--SQWCQGLQKGDIIKEIYHQNVQNLTHLQV   72 (113)
T ss_dssp             HCEEEEEEEECBTTBSSEEEEEET---------------TEEEEEEESC--GGGSTTCCTTCEEEEETTEECTTSCHHHH
T ss_pred             CCCEEEEEEEECCCcccEEEeCCC---------------CCcEEEEecC--hHHhCCCCCCCEEEEECCEECCCCCHHHH
Confidence            345688999999999999996541               2346888877  58889999999999999999999999999


Q ss_pred             HHHHHh--CCCeEEEEEEecCc
Q psy2827          86 VELIKS--GGDVLSLTVISVSP  105 (373)
Q Consensus        86 ~~~i~~--~g~~v~l~V~r~~~  105 (373)
                      +++|+.  .|..+.|+|.|...
T Consensus        73 v~~lk~~~~G~~v~L~V~R~g~   94 (113)
T 3soe_A           73 VEVLKQFPVGADVPLLILRGGP   94 (113)
T ss_dssp             HHHHHHSCTTCEEEEEEEESSC
T ss_pred             HHHHHcCCCCCEEEEEEEECCc
Confidence            999998  38899999998654

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A

Probab=99.33  E-value=1.2e-11  Score=104.66  Aligned_cols=100  Identities=27%  Similarity=0.355  Sum_probs=77.5

Q ss_pred             CCCcEEEEEEcCCC----CccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCC
Q psy2827           6 QTGPREVQIAKSDT----GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGAT   81 (373)
Q Consensus         6 ~~~~r~v~l~r~~~----g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s   81 (373)
                      ....++|+|.+.+.    ++||++.++.+.......++......+++|..|.++|||++|||++||+|++|||.++.+++
T Consensus        21 ~~~~~~v~l~~~~~~~~~~lG~~i~~g~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~  100 (139)
T 2vz5_A           21 QSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVT  100 (139)
T ss_dssp             -CEEEEEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCC
T ss_pred             CCceEEEEEEEcCCCCcccccEEEEccccCChhhhhhcccCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEEcCCCC
Confidence            34668889987653    69999987644222222333322335678999999999999999999999999999999888


Q ss_pred             HHHHHHHHHh-CCCeEEEEEEecCc
Q psy2827          82 HKQVVELIKS-GGDVLSLTVISVSP  105 (373)
Q Consensus        82 ~~~~~~~i~~-~g~~v~l~V~r~~~  105 (373)
                      +.++..+++. .|+.+.++|.|...
T Consensus       101 ~~~~~~~l~~~~g~~v~l~v~R~g~  125 (139)
T 2vz5_A          101 HDQARKRLTKRSEEVVRLLVTRQSL  125 (139)
T ss_dssp             HHHHHHHHCCTTCSEEEEEEEECC-
T ss_pred             HHHHHHHHHhCCCCEEEEEEEECCE
Confidence            9999999987 68999999998654

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.33  E-value=2e-11  Score=100.16  Aligned_cols=89  Identities=18%  Similarity=0.411  Sum_probs=76.0

Q ss_pred             CCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHH
Q psy2827           6 QTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHK   83 (373)
Q Consensus         6 ~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~   83 (373)
                      ...++.|.|.|+. .+|||++.+..+..           .++++|..|.++|||+++| |++||+|++|||+++.+.+++
T Consensus        13 ~~~~~~v~l~k~~~~~lG~~i~~~~~~~-----------~~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~   81 (117)
T 1v62_A           13 ASGPLMVEIVKTPGSALGISLTTTSLRN-----------KSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLL   81 (117)
T ss_dssp             SSSSEEEEEECCTTCCCCCEEEEECCSS-----------SCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHH
T ss_pred             CCCcEEEEEEcCCCCcccEEEEccCCCC-----------CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHH
Confidence            3467999999987 78999998863311           1235899999999999999 999999999999999888899


Q ss_pred             HHHHHHHhCCCeEEEEEEecCc
Q psy2827          84 QVVELIKSGGDVLSLTVISVSP  105 (373)
Q Consensus        84 ~~~~~i~~~g~~v~l~V~r~~~  105 (373)
                      ++..+++..++.+.|+|.|...
T Consensus        82 ~~~~~l~~~g~~v~l~v~r~~~  103 (117)
T 1v62_A           82 EATKLLASISEKVRLEILPVPQ  103 (117)
T ss_dssp             HHHHHHHSCSSEEEEEECCBTT
T ss_pred             HHHHHHHhCCCeEEEEEEECCC
Confidence            9999999889999999988544

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1

Probab=99.33  E-value=1.9e-11  Score=97.62  Aligned_cols=95  Identities=28%  Similarity=0.480  Sum_probs=73.1

Q ss_pred             CCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHH
Q psy2827           7 TGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQ   84 (373)
Q Consensus         7 ~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~   84 (373)
                      -.|+++++.|.. ..|||++.+.......  ..+. ....+++|..|.++|||+++| |++||+|++|||.++.++++.+
T Consensus         3 ldp~~v~l~~~~~~~lG~~~~~~~~~~~~--~~~~-~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~   79 (103)
T 2fcf_A            3 MQPRRVELWREPSKSLGISIVGGRGMGSR--LSNG-EVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQ   79 (103)
T ss_dssp             CSCEEEEECCCC-CCCCEEEECCCC----------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHH
T ss_pred             CCCEEEEEEeCCCCceeEEEEccCCCCcc--cccC-CCCCCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCCCHHH
Confidence            468999999987 5699999875332111  1111 112456899999999999999 9999999999999999999999


Q ss_pred             HHHHHHhCCCeEEEEEEecC
Q psy2827          85 VVELIKSGGDVLSLTVISVS  104 (373)
Q Consensus        85 ~~~~i~~~g~~v~l~V~r~~  104 (373)
                      +..+++..+..+.++|.|..
T Consensus        80 ~~~~l~~~~~~v~l~v~r~~   99 (103)
T 2fcf_A           80 AVEAIRKAGNPVVFMVQSII   99 (103)
T ss_dssp             HHHHHHTCCSSEEEEEECCC
T ss_pred             HHHHHHhCCCcEEEEEEECC
Confidence            99999986669999998754

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}

Probab=99.32  E-value=1.2e-11  Score=99.63  Aligned_cols=96  Identities=26%  Similarity=0.397  Sum_probs=76.3

Q ss_pred             CCCCCCCcEEEEEE--cCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcC
Q psy2827           2 YSTQQTGPREVQIA--KSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVE   78 (373)
Q Consensus         2 ~~~~~~~~r~v~l~--r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~   78 (373)
                      +.+.....+++++.  +...+|||++.+..+.+.    .   ....+++|..|.++|||+++| |++||+|++|||+++.
T Consensus         6 ~~~~~~~~~~v~l~r~~~~~~lG~~~~~~~~~~~----~---~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~   78 (108)
T 2jre_A            6 SDASGFSLYSVELFREKDTSSLGISISGMRDQST----T---GEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQ   78 (108)
T ss_dssp             CSSSSCEEEEEEEECCSTTSCCSEEEECCCCCSC----S---SCCCCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECT
T ss_pred             ccccCcEEEEEEEEecCCCCCcCEEEEcccCCCC----C---CCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECC
Confidence            34555667888885  455789999987643211    0   012356899999999999999 9999999999999999


Q ss_pred             CCCHHHHHHHHHhCCCeEEEEEEecC
Q psy2827          79 GATHKQVVELIKSGGDVLSLTVISVS  104 (373)
Q Consensus        79 ~~s~~~~~~~i~~~g~~v~l~V~r~~  104 (373)
                      ++++.++..+++..+..+.++|.|..
T Consensus        79 ~~~~~~~~~~l~~~g~~v~l~v~R~~  104 (108)
T 2jre_A           79 GMAQSDVVEVLRNAGNPVRLLLIRRL  104 (108)
T ss_dssp             TSCHHHHHHHHHHHCSEEEEEEEECC
T ss_pred             CCCHHHHHHHHHcCCCeEEEEEEeCC
Confidence            98899999999887889999998754

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}

Probab=99.32  E-value=2.2e-11  Score=96.03  Aligned_cols=91  Identities=26%  Similarity=0.429  Sum_probs=73.6

Q ss_pred             CcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHH
Q psy2827           8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVE   87 (373)
Q Consensus         8 ~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~   87 (373)
                      ...++++.++..+|||++.++.+.+..      .....+++|..|.++|||+++||++||+|++|||+++.+.++.+...
T Consensus         3 ~~~~v~~~~~~~glG~~i~~g~~~~~~------~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~   76 (97)
T 2w4f_A            3 EELTLTILRQTGGLGISIAGGKGSTPY------KGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVE   76 (97)
T ss_dssp             CEEEEEEECBTTBSSEEEEECTTSCCS------BTTBCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHH
T ss_pred             eEEEEEEEeCCCceeEEEECCccCCcc------cCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHH
Confidence            456789999988999999986432110      00124568999999999999999999999999999999988877777


Q ss_pred             HHHhCCCeEEEEEEecC
Q psy2827          88 LIKSGGDVLSLTVISVS  104 (373)
Q Consensus        88 ~i~~~g~~v~l~V~r~~  104 (373)
                      .++..++.+.++|.|..
T Consensus        77 ~~~~~g~~v~l~v~R~g   93 (97)
T 2w4f_A           77 ALRGAGTAVQMRVWRER   93 (97)
T ss_dssp             HHHTSCSEEEEEEECCS
T ss_pred             HHhCCCCeEEEEEEeCC
Confidence            77778999999998754

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=5.7e-12  Score=98.69  Aligned_cols=83  Identities=25%  Similarity=0.401  Sum_probs=70.3

Q ss_pred             CCCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCH
Q psy2827           5 QQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATH   82 (373)
Q Consensus         5 ~~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~   82 (373)
                      .+..+|+|+|.|.+ .+|||++.+.               ..+++|..|.++|||+++| |++||+|++|||+++ +.++
T Consensus         3 ~~~~~r~v~l~k~~~~~lG~~i~~~---------------~~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~~   66 (91)
T 2e7k_A            3 SGSSGRMVGIRKTAGEHLGVTFRVE---------------GGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDP   66 (91)
T ss_dssp             CCCCSCBCCBCCCTTCCCCEEEEES---------------SSSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTCH
T ss_pred             CCCCcEEEEEEECCCCcEeEEEEec---------------CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCCH
Confidence            45677889998764 6899999874               1235899999999999987 999999999999999 6669


Q ss_pred             HHHHHHHHhCCCeEEEEEEec
Q psy2827          83 KQVVELIKSGGDVLSLTVISV  103 (373)
Q Consensus        83 ~~~~~~i~~~g~~v~l~V~r~  103 (373)
                      +++.++++..++.+.++|.+.
T Consensus        67 ~~~~~~l~~~~~~v~l~v~~~   87 (91)
T 2e7k_A           67 RALQELLRNASGSVILKILSG   87 (91)
T ss_dssp             HHHHHHHHTCCSSBCEEEECC
T ss_pred             HHHHHHHHcCCCeEEEEEEEC
Confidence            999999998778899988763

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A

Probab=99.32  E-value=1.2e-11  Score=98.85  Aligned_cols=94  Identities=23%  Similarity=0.310  Sum_probs=75.1

Q ss_pred             CCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHH
Q psy2827           4 TQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHK   83 (373)
Q Consensus         4 ~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~   83 (373)
                      +......+|++.|++ +|||++.++.+..+..    ......+++|..|.++|||++ ||++||+|++|||.++.+.++.
T Consensus         7 ~~~~~~~~v~l~~~~-~lG~~i~gg~~~~~~p----~~~~~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~   80 (103)
T 1n7t_A            7 ELAKQEIRVRVEKDP-ELGFSISGGVGGRGNP----FRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHG   80 (103)
T ss_dssp             SSSCCCEEEEEECSS-CCCBEEEECTTSSBCS----SCSSCCSEECCCBSSSSTTSS-SCCTTCEEEEETTEECSSCCHH
T ss_pred             CcccEEEEEEEccCC-CccEEEEcccCCCCCc----cccCCCCEEEEEECCCCchHH-CCCCCCEEEEECCEECCCCCHH
Confidence            445566788888876 8999999864321100    011234568999999999999 9999999999999999999999


Q ss_pred             HHHHHHHhCCCeEEEEEEec
Q psy2827          84 QVVELIKSGGDVLSLTVISV  103 (373)
Q Consensus        84 ~~~~~i~~~g~~v~l~V~r~  103 (373)
                      ++...++..++.+.++|.|.
T Consensus        81 ~~~~~~~~~g~~v~l~v~R~  100 (103)
T 1n7t_A           81 QAVSLLKTFQNTVELIIVRE  100 (103)
T ss_dssp             HHHHHHHHCCSEEEEEEECC
T ss_pred             HHHHHhhcCCCeEEEEEEec
Confidence            99999988889999999874

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A

Probab=99.32  E-value=2.1e-11  Score=96.03  Aligned_cols=82  Identities=28%  Similarity=0.452  Sum_probs=66.2

Q ss_pred             CcEEEEEEcCCC---CccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHH
Q psy2827           8 GPREVQIAKSDT---GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQ   84 (373)
Q Consensus         8 ~~r~v~l~r~~~---g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~   84 (373)
                      .+|.|++.|+..   +|||++.+....+           ..+++|..|.++|||++|||++||+|++|||+++.+++|++
T Consensus         6 ~~~~v~i~k~~~~~~~~Gf~v~~~~~~~-----------~~g~~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~   74 (94)
T 3kzd_A            6 VTHSIHIEKSDTAADTYGFSLSSVEEDG-----------IRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSM   74 (94)
T ss_dssp             EEEEEEEEC------CCSEEEEEECSSS-----------SCEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHH
T ss_pred             ceeEEEEEeCCCCcCCcCEEEEecCCCC-----------cCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHH
Confidence            468899999874   7999998742210           23468999999999999999999999999999999988999


Q ss_pred             HHHHHHhCCCeEEEEEEe
Q psy2827          85 VVELIKSGGDVLSLTVIS  102 (373)
Q Consensus        85 ~~~~i~~~g~~v~l~V~r  102 (373)
                      +..++++  ..++++|..
T Consensus        75 l~~~l~~--~~l~ltV~~   90 (94)
T 3kzd_A           75 LKDFLSQ--PSLGLLVRT   90 (94)
T ss_dssp             HHHHHHS--SEEEEEEEE
T ss_pred             HHHHHhC--CeEEEEEEe
Confidence            9999875  568887764

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.31  E-value=4.9e-12  Score=102.71  Aligned_cols=88  Identities=38%  Similarity=0.621  Sum_probs=76.1

Q ss_pred             CCCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCC
Q psy2827           3 STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGAT   81 (373)
Q Consensus         3 ~~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s   81 (373)
                      ...++.++.|+|.|+..+|||++.+..+             .++++|..|.+++||+++| |++||+|++|||+++.+++
T Consensus        10 ~~~~~~~~~v~l~k~~~glG~~l~~~~~-------------~~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~   76 (113)
T 1um7_A           10 GGDAREPRKIILHKGSTGLGFNIVGGED-------------GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNAT   76 (113)
T ss_dssp             CCCCCSEEEEEEECCSSCSSBCCBCCST-------------TCCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCC
T ss_pred             CcCCCceEEEEEEECCCcccEEEEeccC-------------CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC
Confidence            3456789999999999999999987632             1234789999999999999 9999999999999999988


Q ss_pred             HHHHHHHHHhCCCeEEEEEEec
Q psy2827          82 HKQVVELIKSGGDVLSLTVISV  103 (373)
Q Consensus        82 ~~~~~~~i~~~g~~v~l~V~r~  103 (373)
                      +.++..+++..++.+.++|.|.
T Consensus        77 ~~~~~~~~~~~~~~v~l~v~r~   98 (113)
T 1um7_A           77 HEQAAAALKRAGQSVTIVAQYR   98 (113)
T ss_dssp             HHHHHHHHHSCCSEEEEEEECC
T ss_pred             HHHHHHHHHhCCCcEEEEEEEC
Confidence            8999988888889999999864

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.31  E-value=3.4e-12  Score=103.91  Aligned_cols=84  Identities=29%  Similarity=0.534  Sum_probs=71.6

Q ss_pred             CCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHH
Q psy2827           7 TGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVV   86 (373)
Q Consensus         7 ~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~   86 (373)
                      ..+|+|+|.|++.+|||++.+.               .| ++|..|.+++||++|||++||+|++|||+++.+++|+++.
T Consensus        14 ~~~r~v~l~~~~~~~G~~l~~~---------------~~-v~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~d~~   77 (111)
T 1vae_A           14 SPPRGIHFTVEEGDLGFTLRGN---------------TP-VQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVM   77 (111)
T ss_dssp             CCCCCCCEECCSSCCSCCEESS---------------SS-CEECCCCTTSSHHHHHCCTTCEEEEETTEECSSCCHHHHH
T ss_pred             CCCeEEEEEcCCCcccEEEeCC---------------CC-EEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHH
Confidence            3678899999989999998654               12 3799999999999999999999999999999966699999


Q ss_pred             HHHHh-CCCeEEEEEEecCcc
Q psy2827          87 ELIKS-GGDVLSLTVISVSPE  106 (373)
Q Consensus        87 ~~i~~-~g~~v~l~V~r~~~~  106 (373)
                      .+++. .+..+.++|.+..+.
T Consensus        78 ~~i~~~~~~~v~l~V~~~~~~   98 (111)
T 1vae_A           78 KLLKSFGGEEVEMKVVSLLDS   98 (111)
T ss_dssp             HHHHHTTTSEECEEEECEECC
T ss_pred             HHHHhCCCceEEEEEEecCCC
Confidence            99988 456799999875443

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A

Probab=99.31  E-value=1.5e-11  Score=107.70  Aligned_cols=88  Identities=20%  Similarity=0.314  Sum_probs=73.1

Q ss_pred             CcEEEEEEcCCCCccEEEEec-ccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHH
Q psy2827           8 GPREVQIAKSDTGFGFNVRGQ-VSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQV   85 (373)
Q Consensus         8 ~~r~v~l~r~~~g~Gfsi~g~-~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~   85 (373)
                      ...+|+|.|+..||||+|.+. .....       .....+++|..|.+||||+++| |++||+|++|||+++.++++.++
T Consensus        80 ~~~~v~l~k~~~glG~~i~g~~~g~~~-------~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~  152 (170)
T 3egg_C           80 ELFPVELEKDSEGLGISIIGMGAGADM-------GLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFA  152 (170)
T ss_dssp             EEEEEEEECBTTBSSEEEEEECSSSSC-------CSSSBEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHH
T ss_pred             eEEEEEEEeCCCeEeEEEEecccCCcc-------ccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHH
Confidence            456788999999999999983 11100       0012456899999999999999 99999999999999999999999


Q ss_pred             HHHHHhCCCeEEEEEEe
Q psy2827          86 VELIKSGGDVLSLTVIS  102 (373)
Q Consensus        86 ~~~i~~~g~~v~l~V~r  102 (373)
                      +.+++.++..+.|+|.|
T Consensus       153 ~~~l~~~g~~v~L~V~R  169 (170)
T 3egg_C          153 ASVLRNTKGRVRFMIGR  169 (170)
T ss_dssp             HHHHHHCCSEEEEEEEE
T ss_pred             HHHHHcCCCEEEEEEEe
Confidence            99999988999999986

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A

Probab=99.31  E-value=1.5e-11  Score=109.68  Aligned_cols=90  Identities=26%  Similarity=0.508  Sum_probs=77.2

Q ss_pred             CCCCCCcEEEEEEcC-CCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCC
Q psy2827           3 STQQTGPREVQIAKS-DTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGAT   81 (373)
Q Consensus         3 ~~~~~~~r~v~l~r~-~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s   81 (373)
                      .+.+..++.|++.|. +.+|||++.++...            ..+++|..|.+||||+++||++||+|++|||.++.+++
T Consensus        79 ~~~~~~~~~v~l~k~~~~~lG~~i~~~~~~------------~~~~~V~~V~~gspA~~aGL~~GD~Il~vng~~v~~~~  146 (192)
T 3k1r_A           79 PRRSRKLKEVRLDRLHPEGLGLSVRGGLEF------------GCGLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCT  146 (192)
T ss_dssp             CCCCSSCEEEEEETTSTTCCCEEEEEEGGG------------TEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCC
T ss_pred             CCCCCceEEEEEEeCCCCceeEEEEccccc------------CCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCC
Confidence            345567899999998 57899999886431            23458999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCeEEEEEEecCc
Q psy2827          82 HKQVVELIKSGGDVLSLTVISVSP  105 (373)
Q Consensus        82 ~~~~~~~i~~~g~~v~l~V~r~~~  105 (373)
                      |.++...++. ++.+.++|.|.+.
T Consensus       147 ~~~~~~~l~~-~~~v~l~v~r~g~  169 (192)
T 3k1r_A          147 HEEVINLIRT-EKTVSIKVRHIGL  169 (192)
T ss_dssp             HHHHHHHHTS-SSEEEEEEEECCE
T ss_pred             HHHHHHHHcC-CCeEEEEEEECCc
Confidence            9999999988 8999999988543

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.30  E-value=8.5e-12  Score=102.21  Aligned_cols=92  Identities=25%  Similarity=0.350  Sum_probs=75.4

Q ss_pred             CCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHH
Q psy2827           6 QTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQ   84 (373)
Q Consensus         6 ~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~   84 (373)
                      ...+++|+|.|++ .+|||++.++.+.+.      ......+++|..|.++|||+ +||++||+|++|||+++.++++.+
T Consensus        12 ~~~~~~v~l~k~~~~glG~~i~gg~~~~~------~~~~~~gv~V~~V~~~spA~-~gL~~GD~I~~Vng~~v~~~~~~~   84 (117)
T 2csj_A           12 IWEQYTVTLQKDSKRGFGIAVSGGRDNPH------FENGETSIVISDVLPGGPAD-GLLQENDRVVMVNGTPMEDVLHSF   84 (117)
T ss_dssp             EEEEEEEEEECCSSSTTCEEEECCSSCCC------CSSCCCBCEEEEECTTSSHH-HHBCTTCEEEEESSCBCBTCCHHH
T ss_pred             cceEEEEEEEECCCCccCEEEeCCcCCcc------ccCCCCCEEEEEECCCCccc-ccCCCCCEEEEECCEECCCcCHHH
Confidence            3467889999997 799999998754211      00012346899999999997 999999999999999999999999


Q ss_pred             HHHHHHhCCCeEEEEEEecC
Q psy2827          85 VVELIKSGGDVLSLTVISVS  104 (373)
Q Consensus        85 ~~~~i~~~g~~v~l~V~r~~  104 (373)
                      +...++..++.+.|+|.|..
T Consensus        85 ~~~~l~~~~~~v~l~v~R~~  104 (117)
T 2csj_A           85 AVQQLRKSGKIAAIVVKRPR  104 (117)
T ss_dssp             HHHHHHHSCSEEEEEEEEEE
T ss_pred             HHHHHhcCCCeEEEEEEECC
Confidence            99999988899999998854

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}

Probab=99.30  E-value=3.5e-11  Score=99.29  Aligned_cols=93  Identities=28%  Similarity=0.476  Sum_probs=76.0

Q ss_pred             CCCCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCC
Q psy2827           2 YSTQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGA   80 (373)
Q Consensus         2 ~~~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~   80 (373)
                      +++.+.....+++.++..+|||++.+.....      ++   ..+++|..|.++|||+++| |++||+|++|||+++.++
T Consensus        24 ~~~~~~~~~~v~l~~~~~~lG~~l~~~~~~~------~g---~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~   94 (121)
T 2kom_A           24 NTKKIGKRLNIQLKKGTEGLGFSITSRDVTI------GG---SAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGK   94 (121)
T ss_dssp             CCCCSCEEEEEEEECCTTCCCEEEECCCCSS------SS---SCCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTTS
T ss_pred             cCccCCeEEEEEEEcCCCcEeEEEEeccCCc------CC---CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCCC
Confidence            3455556677888888889999998763210      01   2346899999999999999 999999999999999998


Q ss_pred             CHHHHHHHHHhC--CCeEEEEEEec
Q psy2827          81 THKQVVELIKSG--GDVLSLTVISV  103 (373)
Q Consensus        81 s~~~~~~~i~~~--g~~v~l~V~r~  103 (373)
                      +++++..+++..  +..+.++|.|.
T Consensus        95 ~~~~~~~~l~~~~~g~~v~l~v~R~  119 (121)
T 2kom_A           95 SQEEVVSLLRSTKMEGTVSLLVFRQ  119 (121)
T ss_dssp             CHHHHHHHHHHCCSSCEEEEEEEEC
T ss_pred             CHHHHHHHHhcCCCCCEEEEEEEeC
Confidence            899999999873  88999999874

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=2.1e-11  Score=96.91  Aligned_cols=88  Identities=32%  Similarity=0.453  Sum_probs=73.6

Q ss_pred             CCCCCcEEEEEEcCCCC-ccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCH
Q psy2827           4 TQQTGPREVQIAKSDTG-FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATH   82 (373)
Q Consensus         4 ~~~~~~r~v~l~r~~~g-~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~   82 (373)
                      .....+++|+|.|.+.+ |||++.+....            ..+++|..|.++|||+++||++||+|++|||.++.+.++
T Consensus         6 ~~~~~~~~v~l~~~~~~~lG~~~~~~~~~------------~~gv~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~   73 (100)
T 2eeh_A            6 SGSDIIHSVRVEKSPAGRLGFSVRGGSEH------------GLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTM   73 (100)
T ss_dssp             SCCCEECCEEECCCSSSSCSEEEECCTTT------------TCCEEEEEECTTSHHHHHTCCSSCEEEEETTEECSSCCH
T ss_pred             CCCCeEEEEEEEECCCCCccEEEEccccC------------CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCH
Confidence            34456788999998765 99999875321            234689999999999999999999999999999999888


Q ss_pred             HHHHHHHHhCCCeEEEEEEecC
Q psy2827          83 KQVVELIKSGGDVLSLTVISVS  104 (373)
Q Consensus        83 ~~~~~~i~~~g~~v~l~V~r~~  104 (373)
                      .++...++. +..+.++|.|..
T Consensus        74 ~~~~~~~~~-~~~v~l~v~R~g   94 (100)
T 2eeh_A           74 GSAVKVLTS-SSRLHMMVRRMG   94 (100)
T ss_dssp             HHHHHHHHS-CSSEEEEEEECS
T ss_pred             HHHHHhhcC-CCEEEEEEEECC
Confidence            999988887 789999998854

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.29  E-value=1.6e-11  Score=100.17  Aligned_cols=89  Identities=22%  Similarity=0.401  Sum_probs=75.6

Q ss_pred             CCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHH
Q psy2827           6 QTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQ   84 (373)
Q Consensus         6 ~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~   84 (373)
                      |...+.+++.++..+|||++.++.+.+           ..+++|..|.++|||+++| |++||+|++|||+++.++++.+
T Consensus        15 ~~~~~~v~l~~~~~glG~~l~~~~~~~-----------~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~   83 (116)
T 2dm8_A           15 PGQEMIIEISKGRSGLGLSIVGGKDTP-----------LNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEE   83 (116)
T ss_dssp             TTSCEEEEEECCSSCCCCCCBCCTTSS-----------CSSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHHH
T ss_pred             CCCEEEEEEEECCCcccEEEeCCCCCC-----------cCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHH
Confidence            445688999999999999998764321           1245899999999999999 9999999999999999988999


Q ss_pred             HHHHHHhCCCeEEEEEEecCc
Q psy2827          85 VVELIKSGGDVLSLTVISVSP  105 (373)
Q Consensus        85 ~~~~i~~~g~~v~l~V~r~~~  105 (373)
                      +..+++..+..+.++|.|...
T Consensus        84 ~~~~l~~~~~~v~l~v~R~~~  104 (116)
T 2dm8_A           84 AITALRQTPQKVRLVVYRDEA  104 (116)
T ss_dssp             HHHHHHTCCSEEEEEEECCSS
T ss_pred             HHHHHHhCCCeEEEEEEeCCc
Confidence            999998877899999987543

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A

Probab=99.29  E-value=1.8e-11  Score=98.50  Aligned_cols=83  Identities=29%  Similarity=0.409  Sum_probs=70.6

Q ss_pred             CcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC--CCCCCEEEEECCEEcCCCCHHH
Q psy2827           8 GPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG--IRKGDRILAVNNVNVEGATHKQ   84 (373)
Q Consensus         8 ~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG--L~~GD~Il~InG~~v~~~s~~~   84 (373)
                      ..+.+++.|+. .+|||++.++.+.            ..+++|..|.++|||+++|  |++||+|++|||.++.++++.+
T Consensus        17 ~~~~v~l~~~~~~~~G~~~~gg~~~------------~~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~   84 (107)
T 3nfk_A           17 NLVLIRMKPDENGRFGFNVKGGYDQ------------KMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQ   84 (107)
T ss_dssp             CCEEEEECCCTTSCCCEEEEEEGGG------------TEEEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHH
T ss_pred             CEEEEEEEcCCCCCCCEEEEccCCC------------CCCeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHH
Confidence            46788998887 7899999886431            1235899999999999999  9999999999999999999999


Q ss_pred             HHHHHHhCC----CeEEEEEEe
Q psy2827          85 VVELIKSGG----DVLSLTVIS  102 (373)
Q Consensus        85 ~~~~i~~~g----~~v~l~V~r  102 (373)
                      +...++..+    ..+.|+|.|
T Consensus        85 ~~~~i~~~~~~~~~~v~l~v~r  106 (107)
T 3nfk_A           85 VVLFIKASCERHSGELMLLVRP  106 (107)
T ss_dssp             HHHHHHCGGGSBTTBEEEEEEC
T ss_pred             HHHHHHhccccCCcEEEEEEEc
Confidence            999999854    489998875

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}

Probab=99.29  E-value=3.4e-11  Score=99.69  Aligned_cols=96  Identities=29%  Similarity=0.497  Sum_probs=75.0

Q ss_pred             CCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHH
Q psy2827           7 TGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQ   84 (373)
Q Consensus         7 ~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~   84 (373)
                      ..|+++++.|.. .+|||++.+..+.....  .+. ....+++|..|.++|||++|| |++||+|++|||.++.++++++
T Consensus        23 ~~p~~v~l~k~~~~~lGi~v~~~~~~~~~~--~~~-~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~   99 (123)
T 2iwq_A           23 MQPRRVELWREPSKSLGISIVGGRGMGSRL--SNG-EVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQ   99 (123)
T ss_dssp             CCCEEEEECCCTTSCCSEEEEECC------------CCCCSEEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHH
T ss_pred             CCCEEEEEEecCCCCccEEEEeccCccccc--ccc-CCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHH
Confidence            467999999886 57999998753321111  111 112457899999999999999 9999999999999999999999


Q ss_pred             HHHHHHhCCCeEEEEEEecCc
Q psy2827          85 VVELIKSGGDVLSLTVISVSP  105 (373)
Q Consensus        85 ~~~~i~~~g~~v~l~V~r~~~  105 (373)
                      +..+++..+..+.++|.|..+
T Consensus       100 ~~~~l~~~~~~v~l~v~r~~~  120 (123)
T 2iwq_A          100 AVEAIRKAGNPVVFMVQSIIS  120 (123)
T ss_dssp             HHHHHHHCCSSEEEEEECCCC
T ss_pred             HHHHHHcCCCeEEEEEEECCc
Confidence            999999877799999987654

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A

Probab=99.29  E-value=1.1e-11  Score=103.17  Aligned_cols=95  Identities=22%  Similarity=0.418  Sum_probs=74.1

Q ss_pred             CCCCCCcEEEEEE---cCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcC
Q psy2827           3 STQQTGPREVQIA---KSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVE   78 (373)
Q Consensus         3 ~~~~~~~r~v~l~---r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~   78 (373)
                      ++.....+++++.   ++..+|||++.+..+...     +   ...+++|..|.++|||+++| |++||+|++|||+++.
T Consensus        18 ~~~~~~~~~~~v~l~k~~~~glG~~i~~~~~~~~-----~---~~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~   89 (127)
T 1wg6_A           18 SLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRET-----G---TDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLL   89 (127)
T ss_dssp             SCCCCEEEEEEEECSSSTTTCCCCEEEEEEETTT-----T---EEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEEST
T ss_pred             CCCCCCceEEEEEEeeCCCCccCeEEecccCCCC-----C---CCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECC
Confidence            4444455565555   455789999998743200     0   01346899999999999999 9999999999999999


Q ss_pred             CCCHHHHHHHHHhC-------CCeEEEEEEecCc
Q psy2827          79 GATHKQVVELIKSG-------GDVLSLTVISVSP  105 (373)
Q Consensus        79 ~~s~~~~~~~i~~~-------g~~v~l~V~r~~~  105 (373)
                      +++|.+++.+++..       +..+.|+|.|..+
T Consensus        90 ~~~~~~~~~~l~~~~~~~g~~~~~v~l~v~R~~~  123 (127)
T 1wg6_A           90 GKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSG  123 (127)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHTCEEEEEEEECSC
T ss_pred             CCCHHHHHHHHHHhhccccCCCCEEEEEEEeCCC
Confidence            99999999999864       7899999998543

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}

Probab=99.28  E-value=1.8e-11  Score=99.80  Aligned_cols=85  Identities=34%  Similarity=0.601  Sum_probs=73.7

Q ss_pred             CcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHH
Q psy2827           8 GPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVV   86 (373)
Q Consensus         8 ~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~   86 (373)
                      .|+++.+.+.. .+|||++.....             ..+++|..|.++|||+++||++||+|++|||+++.+.++.++.
T Consensus        13 dp~~~~l~~~~~~~~G~~l~~~~~-------------~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~   79 (114)
T 2edz_A           13 NPRECKLSKQEGQNYGFFLRIEKD-------------TDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVV   79 (114)
T ss_dssp             CCEEEEEECCTTCCCSCEEECCTT-------------CCSCEEECCCTTCTTGGGTCCTTCEEEEESSSBCSSSCHHHHH
T ss_pred             CCEEEEEeCCCCCcccEEEEEecC-------------CCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHH
Confidence            78999999874 679999986532             1235799999999999999999999999999999998899999


Q ss_pred             HHHHhCCCeEEEEEEecCc
Q psy2827          87 ELIKSGGDVLSLTVISVSP  105 (373)
Q Consensus        87 ~~i~~~g~~v~l~V~r~~~  105 (373)
                      ..++..|+.+.++|.|...
T Consensus        80 ~~l~~~g~~v~l~v~R~~~   98 (114)
T 2edz_A           80 ELVRKSGNSVTLLVLDGDS   98 (114)
T ss_dssp             HHHHHTCSEEEEEEECHHH
T ss_pred             HHHHcCCCEEEEEEEECCc
Confidence            9998888999999988543

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.28  E-value=1.1e-11  Score=98.68  Aligned_cols=84  Identities=31%  Similarity=0.453  Sum_probs=71.2

Q ss_pred             CCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHH
Q psy2827           5 QQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQ   84 (373)
Q Consensus         5 ~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~   84 (373)
                      .......+++.++..+|||++.+.               .+ ++|..|.++|||+++||++||+|++|||+++.++++.+
T Consensus        12 ~~~~~~~v~l~~~~~g~G~~~~~~---------------~~-~~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~   75 (100)
T 1whd_A           12 ENGEKLQITIRRGKDGFGFTICCD---------------SP-VRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVE   75 (100)
T ss_dssp             CCCEEEEEEEECCSSSSSCBCCCS---------------SS-CBCCBCCTTSHHHHHTCCSSCEEEEETTEECTTCCHHH
T ss_pred             cccceEEEEEECCCCeeeEEEeCC---------------CC-EEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHH
Confidence            344567788999888999988654               12 36889999999999999999999999999999888999


Q ss_pred             HHHHHHhCCCeEEEEEEecC
Q psy2827          85 VVELIKSGGDVLSLTVISVS  104 (373)
Q Consensus        85 ~~~~i~~~g~~v~l~V~r~~  104 (373)
                      +..+++..+..+.++|.|..
T Consensus        76 ~~~~l~~~~~~v~l~v~R~~   95 (100)
T 1whd_A           76 LAHEIRSCPSEIILLVWRVS   95 (100)
T ss_dssp             HHHHHHHCSSEEEEEEEECC
T ss_pred             HHHHHHcCCCeEEEEEEECC
Confidence            99999887677999998753

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A

Probab=99.28  E-value=2.9e-11  Score=97.25  Aligned_cols=93  Identities=23%  Similarity=0.340  Sum_probs=73.4

Q ss_pred             CCCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHH
Q psy2827           5 QQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHK   83 (373)
Q Consensus         5 ~~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~   83 (373)
                      ....+++|+|.|++ .+|||++.++.+.+.      ..+...+++|..|.++|||+ +||++||+|++|||+++.+++..
T Consensus         4 ~~~~~~~v~l~k~~~~glG~~i~~~~~~~~------~~~~~~gv~V~~V~~~spA~-agl~~GD~I~~vng~~v~~~~~~   76 (107)
T 2h2b_A            4 MIWEQHTVTLHRAPGFGFGIAISGGRDNPH------FQSGETSIVISDVLKGGPAE-GQLQENDRVAMVNGVSMDNVEHA   76 (107)
T ss_dssp             CCEEEEEEEEECBTTTBTCEEEEECTTSCC------TTTCCCCEEEEEECTTSTTB-TTBCTTCEEEEETTEECTTCCHH
T ss_pred             ccceeEEEEEEeCCCCccCEEEecCcCCCc------ccCCCCCEEEEEECCCCchh-hCCCCCCEEEEECCEECCCccHH
Confidence            34467899999996 789999998643211      00112356899999999999 99999999999999999997777


Q ss_pred             HHHHHHHhCCCeEEEEEEecC
Q psy2827          84 QVVELIKSGGDVLSLTVISVS  104 (373)
Q Consensus        84 ~~~~~i~~~g~~v~l~V~r~~  104 (373)
                      +....++..++.+.++|.|..
T Consensus        77 ~~~~~~~~~g~~v~l~v~R~~   97 (107)
T 2h2b_A           77 FAVQQLRKSGKNAKITIRRKK   97 (107)
T ss_dssp             HHHHHHHTCCSEEEEEEEEES
T ss_pred             HHHHHhhCCCCEEEEEEEECC
Confidence            766666667899999998754

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.27  E-value=2.6e-11  Score=99.57  Aligned_cols=86  Identities=34%  Similarity=0.482  Sum_probs=70.8

Q ss_pred             cEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHc-CCCCCCEEEEECCEEcCCCCHHHHHH
Q psy2827           9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA-GIRKGDRILAVNNVNVEGATHKQVVE   87 (373)
Q Consensus         9 ~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~a-GL~~GD~Il~InG~~v~~~s~~~~~~   87 (373)
                      .+.+.+.+. .+|||++.++.+..           ...++|..|.++|||+++ ||++||+|++|||+++.+++|+++.+
T Consensus        19 ~~~~~~~~~-~glG~~i~gg~~~~-----------~~~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~~~~~~~   86 (118)
T 1v6b_A           19 VRLLRIKKE-GSLDLALEGGVDSP-----------VGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEA   86 (118)
T ss_dssp             EEEEEEESC-SCCCCEEEEBTTSS-----------SCSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHH
T ss_pred             EEEEEECCC-CccCEEEEcccCCC-----------CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            456666666 48999999874321           122589999999999999 89999999999999999999999999


Q ss_pred             HHHh----CCCeEEEEEEecCcc
Q psy2827          88 LIKS----GGDVLSLTVISVSPE  106 (373)
Q Consensus        88 ~i~~----~g~~v~l~V~r~~~~  106 (373)
                      .++.    .|..++|+|.|..+.
T Consensus        87 ~l~~~~~~~g~~v~l~v~r~~~~  109 (118)
T 1v6b_A           87 ALQKAWNQGGDWIDLVVAVCPPK  109 (118)
T ss_dssp             HHHHHHHHTCSEEEEEEECCCSC
T ss_pred             HHHHhhhcCCCeEEEEEEeCCcc
Confidence            9876    388999999986554

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}

Probab=99.27  E-value=4e-11  Score=94.29  Aligned_cols=88  Identities=28%  Similarity=0.500  Sum_probs=71.9

Q ss_pred             CcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHH
Q psy2827           8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVV   86 (373)
Q Consensus         8 ~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~   86 (373)
                      ...++++.++..++||++.+..+...        ....+++|..|.++|||+++| |++||+|++|||.++.++++.++.
T Consensus         4 ~~~~v~l~~~~~~lG~~i~~~~~~~~--------~~~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~   75 (97)
T 2iwn_A            4 ETFDVELTKNVQGLGITIAGYIGDKK--------LEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAV   75 (97)
T ss_dssp             EEEEEEEECBTTBSCEEEECCCCC------------CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHH
T ss_pred             EEEEEEEecCCCCCcEEEEccCCCCC--------CCCCCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHH
Confidence            34567888888899999987632110        112345899999999999999 999999999999999998899999


Q ss_pred             HHHHhCCCeEEEEEEec
Q psy2827          87 ELIKSGGDVLSLTVISV  103 (373)
Q Consensus        87 ~~i~~~g~~v~l~V~r~  103 (373)
                      ..++..+..+.++|.|.
T Consensus        76 ~~~~~~~~~v~l~v~r~   92 (97)
T 2iwn_A           76 EVLRHTGQTVLLTLMRR   92 (97)
T ss_dssp             HHHHTCCSEEEEEEEEE
T ss_pred             HHHHcCCCeEEEEEEeC
Confidence            88888889999999874

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.27  E-value=5.5e-11  Score=94.02  Aligned_cols=85  Identities=31%  Similarity=0.442  Sum_probs=71.9

Q ss_pred             CCCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCH
Q psy2827           3 STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATH   82 (373)
Q Consensus         3 ~~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~   82 (373)
                      ++.+...+++++.|+..+|||++...               ..+++|..|.++  |+++||++||+|++|||+++.+++|
T Consensus         5 ~~~~~~~~~v~l~~~~~g~G~~i~~~---------------~~Gv~V~~v~~~--a~~aGL~~GD~I~~vng~~v~~~~~   67 (96)
T 1ujv_A            5 SSGQAELMTLTIVKGAQGFGFTIADS---------------PTGQRVKQILDI--QGCPGLCEGDLIVEINQQNVQNLSH   67 (96)
T ss_dssp             CCCCCCCEEEEEECCSSSSSEEEEEE---------------TTEEEEEEESCG--GGSTTCCSSCEEEEETTEECSSCCH
T ss_pred             CCCCceEEEEEEEeCCCceeEEEEcC---------------CCCEEEEEEecc--cccCCCCCCCEEEEECCEECCCCCH
Confidence            34566778899999999999999754               124578999883  7789999999999999999999999


Q ss_pred             HHHHHHHHh--CCCeEEEEEEecC
Q psy2827          83 KQVVELIKS--GGDVLSLTVISVS  104 (373)
Q Consensus        83 ~~~~~~i~~--~g~~v~l~V~r~~  104 (373)
                      +++.++++.  .++.+.|+|.|..
T Consensus        68 ~~~~~~l~~~~~g~~v~l~v~R~g   91 (96)
T 1ujv_A           68 TEVVDILKDCPIGSETSLIIHRGS   91 (96)
T ss_dssp             HHHHHHHHHSCTTSEEEEEEECCS
T ss_pred             HHHHHHHHcCCCCCEEEEEEEECC
Confidence            999999998  3899999998753

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=3.6e-12  Score=100.80  Aligned_cols=84  Identities=31%  Similarity=0.512  Sum_probs=72.7

Q ss_pred             CCCCCcEEEEEEcCC--CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCC
Q psy2827           4 TQQTGPREVQIAKSD--TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGAT   81 (373)
Q Consensus         4 ~~~~~~r~v~l~r~~--~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s   81 (373)
                      .+.+.+++|+|.|++  .+|||.+.+.               .| ++|..|.++|||+ +||++||+|++|||+++.+.+
T Consensus         4 g~~~~~~~v~l~~~~~~~~~G~~l~~~---------------~~-~~V~~V~~~spA~-agL~~GD~Il~ing~~v~~~~   66 (96)
T 2edv_A            4 GSSGVRHTVKIDKDTLLQDYGFHISES---------------LP-LTVVAVTAGGSAH-GKLFPGDQILQMNNEPAEDLS   66 (96)
T ss_dssp             CSSCEEEEEEECCCSSSCSCSBCCCSS---------------SS-CBCCCBCSSSSST-TTSCTTCBEEEESSCBSTTCC
T ss_pred             CCCCccEEEEEEECCCCCcccEEEecC---------------CC-eEEEEECCCCchh-hCCCCCCEEEEECCEECCCCC
Confidence            455667899999998  5799998763               12 3799999999996 999999999999999999999


Q ss_pred             HHHHHHHHHhCCCeEEEEEEecC
Q psy2827          82 HKQVVELIKSGGDVLSLTVISVS  104 (373)
Q Consensus        82 ~~~~~~~i~~~g~~v~l~V~r~~  104 (373)
                      +.++...++..++.+.++|.|..
T Consensus        67 ~~~~~~~~~~~g~~v~l~v~R~~   89 (96)
T 2edv_A           67 WERAVDILREAEDSLSITVVRCT   89 (96)
T ss_dssp             HHHHHHHHHHCSSCEEEEEEECC
T ss_pred             HHHHHHHHHcCCCeEEEEEEECC
Confidence            99999999988899999999854

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}

Probab=99.27  E-value=2.5e-11  Score=97.21  Aligned_cols=91  Identities=29%  Similarity=0.461  Sum_probs=71.2

Q ss_pred             CCCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHH
Q psy2827           5 QQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHK   83 (373)
Q Consensus         5 ~~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~   83 (373)
                      .+..++.+++.|.. .+|||++.+...+..     .......+++|..|.++|||+++||++||+|++|||+++.+++++
T Consensus        12 s~~~~~~v~l~~~~~~~~G~~l~~~~~~~~-----~~~~~~~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~   86 (104)
T 2z17_A           12 SWSQRKLVTVEKQDNETFGFEIQSYRPQNQ-----NACSSEMFTLICKIQEDSPAHCAGLQAGDVLANINGVSTEGFTYK   86 (104)
T ss_dssp             CCSCCCEEEEECCTTSCCSEEEEECCCCCC-----SSSCCSCCEEEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCHH
T ss_pred             CCCcceEEEEEeCCCCCccEEEEeeecccC-----CcccCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEEcCCCCHH
Confidence            45677889999985 579999998421100     001123456899999999999999999999999999999977799


Q ss_pred             HHHHHHHhCCCeEEEEE
Q psy2827          84 QVVELIKSGGDVLSLTV  100 (373)
Q Consensus        84 ~~~~~i~~~g~~v~l~V  100 (373)
                      ++..+++..+..+.++|
T Consensus        87 ~~~~~l~~~~~~v~l~v  103 (104)
T 2z17_A           87 QVVDLIRSSGNLLTIET  103 (104)
T ss_dssp             HHHHHHHHTTTEEEEEC
T ss_pred             HHHHHHHhCCCcEEEEE
Confidence            99999998656777765

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A

Probab=99.26  E-value=5.7e-11  Score=99.42  Aligned_cols=79  Identities=25%  Similarity=0.365  Sum_probs=66.2

Q ss_pred             CCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhC--CC
Q psy2827          18 DTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVELIKSG--GD   94 (373)
Q Consensus        18 ~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~~~i~~~--g~   94 (373)
                      ..+|||++.++.....         ..++++|..|.++|||+++| |++||+|++|||+++.+.+|+++..+++..  +.
T Consensus        47 ~~~lG~~i~gg~~~~~---------~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~  117 (131)
T 1wfg_A           47 GAMLGLKVVGGKMTES---------GRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEP  117 (131)
T ss_dssp             CTTTTEEEEEEEECSS---------SCEEEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHHTSSSS
T ss_pred             CCCCCEEEecCccCCC---------CCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCC
Confidence            4579999988643211         02356899999999999999 999999999999999998999999999884  58


Q ss_pred             eEEEEEEecCc
Q psy2827          95 VLSLTVISVSP  105 (373)
Q Consensus        95 ~v~l~V~r~~~  105 (373)
                      .+.|+|.|..+
T Consensus       118 ~v~l~v~R~g~  128 (131)
T 1wfg_A          118 QVELVVSRSGP  128 (131)
T ss_dssp             EEEEEEEEECS
T ss_pred             EEEEEEEcCCC
Confidence            99999988654

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.26  E-value=1.9e-11  Score=100.32  Aligned_cols=85  Identities=28%  Similarity=0.415  Sum_probs=72.0

Q ss_pred             CCcEEEEEEcCCC-CccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHc--CCCCCCEEEEECCEEcCCCCHH
Q psy2827           7 TGPREVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA--GIRKGDRILAVNNVNVEGATHK   83 (373)
Q Consensus         7 ~~~r~v~l~r~~~-g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~a--GL~~GD~Il~InG~~v~~~s~~   83 (373)
                      ..+++|++.|+.. +|||++.++.+.            ..+++|..|.++|||+++  ||++||+|++|||+++.++++.
T Consensus        14 ~~~~~v~l~k~~~~~~G~~l~gg~~~------------~~~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~v~~~~~~   81 (119)
T 2cs5_A           14 DNLVLIRMKPDENGRFGFNVKGGYDQ------------KMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHD   81 (119)
T ss_dssp             SCCEEEEECCCSSSCCSEEEEEEGGG------------TEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHH
T ss_pred             CCeEEEEEEeCCCCCcCEEEecccCC------------CCCeEEEEECCCCHHHHhhcCCCCCCEEEEECCEECCCCCHH
Confidence            3568899999875 599999987432            123589999999999999  9999999999999999999999


Q ss_pred             HHHHHHHhC----CCeEEEEEEec
Q psy2827          84 QVVELIKSG----GDVLSLTVISV  103 (373)
Q Consensus        84 ~~~~~i~~~----g~~v~l~V~r~  103 (373)
                      ++..+++..    +..+.++|.|.
T Consensus        82 ~~~~~~~~~~~~~~~~v~l~v~R~  105 (119)
T 2cs5_A           82 QVVLFIKASCERHSGELMLLVRPN  105 (119)
T ss_dssp             HHHHHHHHHHHCCSSCEEEEEECC
T ss_pred             HHHHHHHhccccCCCEEEEEEEcc
Confidence            999999874    25899999874

>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}

Probab=99.26  E-value=4.2e-11  Score=95.12  Aligned_cols=78  Identities=23%  Similarity=0.347  Sum_probs=66.2

Q ss_pred             cEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHH
Q psy2827           9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVEL   88 (373)
Q Consensus         9 ~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~   88 (373)
                      .+.+.+.+...+|||.+....               ..+.|..|.+||||++|||++||+|++|||.++...+|+++...
T Consensus        18 ~~~l~l~~~~~g~G~~l~~~~---------------~~~~I~~V~~gSpA~~AGL~~GD~I~~Ing~~v~~~s~~dv~~~   82 (101)
T 3qik_A           18 AKRLLILPQEEDYGFDIEEKN---------------KAVVVKSVQRGSLAEVAGLQVGRKIYSINEDLVFLRPFSEVESI   82 (101)
T ss_dssp             EEEEEECCCSSSSSEEEEEET---------------TEEEEEEECTTSHHHHHTCCTTCBEEEETTEESTTSCHHHHHHH
T ss_pred             cCeEEEEeCCCcccEEEEccC---------------CCeEEEEECCCCHHHHcCCCCCCEEEEECCEEcCcCCHHHHHHH
Confidence            356778888889999998641               23479999999999999999999999999999975569999999


Q ss_pred             HHh---CCCeEEEEEE
Q psy2827          89 IKS---GGDVLSLTVI  101 (373)
Q Consensus        89 i~~---~g~~v~l~V~  101 (373)
                      ++.   .++++.|.|.
T Consensus        83 i~~~~~~g~~v~LLV~   98 (101)
T 3qik_A           83 LNQSFCSRRPLRLLVA   98 (101)
T ss_dssp             HHHHHHTTCCEEEEEE
T ss_pred             HHHhhccCCeEEEEEe
Confidence            986   5899998875

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=99.26  E-value=5.5e-11  Score=105.21  Aligned_cols=93  Identities=31%  Similarity=0.566  Sum_probs=78.0

Q ss_pred             CCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHH
Q psy2827           6 QTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQ   84 (373)
Q Consensus         6 ~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~   84 (373)
                      +...++|+|.|++.+|||++.++.+.+.    .   ...++++|..|.++|||+++| |++||+|++|||+++.++++.+
T Consensus         3 ~~~~~~v~l~~~~~~lG~~i~~g~~~~~----~---~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~   75 (196)
T 3gsl_A            3 SMEYEEITLERGNSGLGFSIAGGTDNPH----I---GDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSA   75 (196)
T ss_dssp             CEEEEEEEEECBTTBSSEEEECCTTSCT----T---SSCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHH
T ss_pred             CcEEEEEEEEECCCCCCEEEEcccCCcc----c---CCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHH
Confidence            3456889999999999999998754211    0   013456899999999999999 9999999999999999988999


Q ss_pred             HHHHHHhCCCeEEEEEEecCc
Q psy2827          85 VVELIKSGGDVLSLTVISVSP  105 (373)
Q Consensus        85 ~~~~i~~~g~~v~l~V~r~~~  105 (373)
                      ....++..+..+.+++.|..+
T Consensus        76 ~~~~~~~~g~~v~l~v~r~~~   96 (196)
T 3gsl_A           76 AVEALKEAGSIVRLYVMRRKP   96 (196)
T ss_dssp             HHHHHHTSCSEEEEEEEEECC
T ss_pred             HHHHHHhCCCcEEEEEEecCC
Confidence            998888889999999988653

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.25  E-value=4.7e-11  Score=97.98  Aligned_cols=90  Identities=23%  Similarity=0.439  Sum_probs=72.0

Q ss_pred             CCCCcEEEEEEcC-CCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCH
Q psy2827           5 QQTGPREVQIAKS-DTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATH   82 (373)
Q Consensus         5 ~~~~~r~v~l~r~-~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~   82 (373)
                      .+...+.+.+.|. ..+|||++.++.+..           .++++|..|.++|||+++| |++||+|++|||+++.+++|
T Consensus        12 ~~~~~~~v~l~~~~~~~lG~~i~g~~~~~-----------~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~   80 (119)
T 1x6d_A           12 QLDGIHVTILHKEEGAGLGFSLAGGADLE-----------NKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTH   80 (119)
T ss_dssp             SCTTEEEEEEECCTTSCCSEEEECCSSSS-----------CSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCH
T ss_pred             CCCCeEEEEEEeCCCCccCEEEeCCCCCC-----------CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            3445677888886 568999998864321           2345899999999999999 99999999999999998889


Q ss_pred             HHHHHHHHhC-CCeEEEEEEecCc
Q psy2827          83 KQVVELIKSG-GDVLSLTVISVSP  105 (373)
Q Consensus        83 ~~~~~~i~~~-g~~v~l~V~r~~~  105 (373)
                      .++...++.. +..+.+++.|...
T Consensus        81 ~~~~~~l~~~~~~~~~l~v~R~~~  104 (119)
T 1x6d_A           81 HDALAILRQAREPRQAVIVTRKLT  104 (119)
T ss_dssp             HHHHHHHHHTTSSSEEEEEEECCC
T ss_pred             HHHHHHHHhCCCCeEEEEEEcCCC
Confidence            9999999884 5556677777543

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.25  E-value=5.3e-11  Score=93.10  Aligned_cols=76  Identities=24%  Similarity=0.521  Sum_probs=63.2

Q ss_pred             CcEEEEEEcC--CCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHH
Q psy2827           8 GPREVQIAKS--DTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQV   85 (373)
Q Consensus         8 ~~r~v~l~r~--~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~   85 (373)
                      .++.+.+.+.  ..+|||++.++                   +|..|.++|||+++||++||+|++|||+++.+.++.++
T Consensus        11 ~~~~~~i~~~~~~~~lG~~~~~G-------------------~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~   71 (90)
T 1y7n_A           11 NVTTVLIRRPDLRYQLGFSVQNG-------------------IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKI   71 (90)
T ss_dssp             SCEEEEEEESSTTSCCCEEEETT-------------------EEEEECTTSHHHHHTCCSSCEEEEETTEECTTSCHHHH
T ss_pred             CcceEEEEeCCCccccCeEecCC-------------------EEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHH
Confidence            3455555544  35799988432                   58999999999999999999999999999987779999


Q ss_pred             HHHHHhCCCeEEEEEEe
Q psy2827          86 VELIKSGGDVLSLTVIS  102 (373)
Q Consensus        86 ~~~i~~~g~~v~l~V~r  102 (373)
                      ..+++..+..+.++|.+
T Consensus        72 ~~~l~~~g~~v~l~v~p   88 (90)
T 1y7n_A           72 VHILSNAVGEIHMKTMP   88 (90)
T ss_dssp             HHHHHHCCEEEEEEEEC
T ss_pred             HHHHHcCCCeEEEEEEE
Confidence            99999888899998864

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.25  E-value=4.9e-11  Score=98.45  Aligned_cols=91  Identities=25%  Similarity=0.432  Sum_probs=73.6

Q ss_pred             CCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHH
Q psy2827           7 TGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQ   84 (373)
Q Consensus         7 ~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~   84 (373)
                      ..+++|++.|+. .+|||++.+.......        ....++|..|.+++||+++| |++||+|++|||+++.++++++
T Consensus        14 ~~~~~v~l~k~~~~glG~~l~~~~~~~~~--------~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~   85 (122)
T 1v5q_A           14 TETTEVVLTADPVTGFGIQLQGSVFATET--------LSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEE   85 (122)
T ss_dssp             EEEEEEEECCCSSSSSCEEEECCSCCSSS--------CSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHH
T ss_pred             ceeEEEEEEeCCCCccCEEEecccccCCc--------CCCCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHH
Confidence            356788888885 7899999876211100        01224799999999999999 9999999999999999888999


Q ss_pred             HHHHHHh-C-CCeEEEEEEecCc
Q psy2827          85 VVELIKS-G-GDVLSLTVISVSP  105 (373)
Q Consensus        85 ~~~~i~~-~-g~~v~l~V~r~~~  105 (373)
                      +.++++. . ++.+.|+|.|...
T Consensus        86 ~~~~l~~~~~g~~v~l~v~R~~~  108 (122)
T 1v5q_A           86 ANQLLRDSSITSKVTLEIEFDVA  108 (122)
T ss_dssp             HHHHHHHHTTTTCEEEEEEEECC
T ss_pred             HHHHHHhCCCCCeEEEEEEECCc
Confidence            9999987 4 8899999998543

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=99.24  E-value=1.7e-11  Score=114.37  Aligned_cols=88  Identities=28%  Similarity=0.431  Sum_probs=76.5

Q ss_pred             CCCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHH-cCCCCCCEEEEECCEEcCCCCH
Q psy2827           5 QQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEK-AGIRKGDRILAVNNVNVEGATH   82 (373)
Q Consensus         5 ~~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~-aGL~~GD~Il~InG~~v~~~s~   82 (373)
                      ....+++|+|.|++ .+|||+|.++.+.            ..+++|..|.+||||++ +||++||+|++|||+++.++++
T Consensus        74 ~~~~~r~V~L~k~~~~glGf~I~gg~d~------------~~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~v~~~t~  141 (263)
T 1z87_A           74 LLLQRRRVTVRKADAGGLGISIKGGREN------------KMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATH  141 (263)
T ss_dssp             TSCSSEEECCCTTTTCCCCCEEEEETTT------------TEEEEEEECCTTSHHHHCTTCCSSCEEEEESSCBCTTSCH
T ss_pred             CCCccEEEEEEeCCCCCEeEEEeeccCC------------CCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCcCH
Confidence            34468999999985 7899999987432            12458999999999999 7999999999999999999999


Q ss_pred             HHHHHHHHhCCCeEEEEEEecC
Q psy2827          83 KQVVELIKSGGDVLSLTVISVS  104 (373)
Q Consensus        83 ~~~~~~i~~~g~~v~l~V~r~~  104 (373)
                      .+++.+++..++.++|+|.|..
T Consensus       142 ~e~v~~l~~~g~~V~L~V~R~~  163 (263)
T 1z87_A          142 DEAVQALKKTGKEVVLEVKYMK  163 (263)
T ss_dssp             HHHHHHHHHCCSCCCEEEECCS
T ss_pred             HHHHHHHhcCCCeEEEEEEeCc
Confidence            9999999998888999999854

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.24  E-value=4.7e-11  Score=99.42  Aligned_cols=94  Identities=28%  Similarity=0.462  Sum_probs=76.3

Q ss_pred             CCCCcEEEEEEc-CCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCH
Q psy2827           5 QQTGPREVQIAK-SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATH   82 (373)
Q Consensus         5 ~~~~~r~v~l~r-~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~   82 (373)
                      ....+++|.+.| +..+|||++.+..+...    .+   ...+++|..|.++|||+++| |++||+|++|||.++.++++
T Consensus        12 ~~~~~~~v~l~~~~~~~lG~~i~~~~~~~~----~~---~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~   84 (129)
T 2dmz_A           12 SLFETYNVELVRKDGQSLGIRIVGYVGTSH----TG---EASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFAN   84 (129)
T ss_dssp             CCEEEEEEEECCCTTCCCCEEEEEECCCSS----SC---CCCEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCH
T ss_pred             CCCcEEEEEEEeCCCCCcCEEEEeecCCcc----cC---CCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            344567788865 55789999998643211    01   12456899999999999999 99999999999999999999


Q ss_pred             HHHHHHHHhCCCeEEEEEEecCc
Q psy2827          83 KQVVELIKSGGDVLSLTVISVSP  105 (373)
Q Consensus        83 ~~~~~~i~~~g~~v~l~V~r~~~  105 (373)
                      .++..+++..+..+.|+|.|...
T Consensus        85 ~~~~~~l~~~~~~v~l~v~R~~~  107 (129)
T 2dmz_A           85 HDVVEVLRNAGQVVHLTLVRRKT  107 (129)
T ss_dssp             HHHHHHHHHCCSSEEEEEEEESS
T ss_pred             HHHHHHHHcCCCeEEEEEEeCCc
Confidence            99999999888999999998653

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}

Probab=99.23  E-value=4.4e-11  Score=96.42  Aligned_cols=82  Identities=20%  Similarity=0.307  Sum_probs=69.2

Q ss_pred             EEEEEEc-CCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHH
Q psy2827          10 REVQIAK-SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVE   87 (373)
Q Consensus        10 r~v~l~r-~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~~   87 (373)
                      .+|+|.| ...++||++.+.               ..+++|..|.++|||+++| |++||+|++|||+++.+.++.++..
T Consensus         4 ~~v~L~k~~~~glG~~i~~~---------------~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~   68 (106)
T 2la8_A            4 FNVDLMKKAGKELGLSLSPN---------------EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYA   68 (106)
T ss_dssp             EEEEECCBSSSTTCCEEEEC---------------SSSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHH
T ss_pred             EEEEEEeCCCCccCEEEEeC---------------CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            4677874 457899998763               1245899999999999999 9999999999999999888999999


Q ss_pred             HHHhCCCeEEEEEEecCcc
Q psy2827          88 LIKSGGDVLSLTVISVSPE  106 (373)
Q Consensus        88 ~i~~~g~~v~l~V~r~~~~  106 (373)
                      .++..++.+.++|.|..+.
T Consensus        69 ~~~~~~~~v~l~v~R~~~~   87 (106)
T 2la8_A           69 LFKGANGKVSMEVTRPKPG   87 (106)
T ss_dssp             HHHSCBSCEEEEEEECCSC
T ss_pred             HHhCCCCeEEEEEEeCCCC
Confidence            8888778899999986553

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}

Probab=99.22  E-value=9.7e-11  Score=91.04  Aligned_cols=75  Identities=28%  Similarity=0.403  Sum_probs=64.2

Q ss_pred             EEEEEcCC--CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHH
Q psy2827          11 EVQIAKSD--TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVE   87 (373)
Q Consensus        11 ~v~l~r~~--~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~~   87 (373)
                      .+++.+..  .+|||++.++                  ++|..|.++|||+++| |++||+|++|||+++.+.+|+++.+
T Consensus         3 ~v~l~~~~~~~~~G~~~~~g------------------v~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~   64 (88)
T 3e17_A            3 GVLLMKSRANEEYGLRLGSQ------------------IFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARK   64 (88)
T ss_dssp             EEEEECBTTBCCCCEEEEEE------------------EEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHH
T ss_pred             EEEEEeCCCCCCCCEEEeCC------------------EEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            35666543  5799988664                  4799999999999999 9999999999999998888999999


Q ss_pred             HHHhCCCeEEEEEEec
Q psy2827          88 LIKSGGDVLSLTVISV  103 (373)
Q Consensus        88 ~i~~~g~~v~l~V~r~  103 (373)
                      +++..+..+.+++.+.
T Consensus        65 ~i~~~~~~v~L~v~~~   80 (88)
T 3e17_A           65 LIEKSRGKLQLVVLRD   80 (88)
T ss_dssp             HHHHTTTEEEEEECCC
T ss_pred             HHHcCCCeEEEEEeCC
Confidence            9999888898888653

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.22  E-value=3.8e-11  Score=94.35  Aligned_cols=83  Identities=25%  Similarity=0.339  Sum_probs=67.9

Q ss_pred             EEEEEEc-CCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHH
Q psy2827          10 REVQIAK-SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVEL   88 (373)
Q Consensus        10 r~v~l~r-~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~   88 (373)
                      .++++.+ ++.+|||++.++.+.            ..+++|..|.++|||+++||++||+|++|||+++.++++.++...
T Consensus         6 ~~~~~~~~~~~~lG~~l~~g~~~------------~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~   73 (94)
T 1vb7_A            6 SGLTVDVAGPAPWGFRISGGRDF------------HTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSK   73 (94)
T ss_dssp             CCEEEEECSSSCCSBCCEEETTT------------TEEEECCCBCTTSSHHHHTCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             EEEEEEecCCCCccEEEecccCC------------CCCeEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            3455543 456899999876331            224578999999999999999999999999999999888999999


Q ss_pred             HHhCCCeEEEEEEecC
Q psy2827          89 IKSGGDVLSLTVISVS  104 (373)
Q Consensus        89 i~~~g~~v~l~V~r~~  104 (373)
                      ++..++.+.++|.|..
T Consensus        74 l~~~~~~v~l~v~R~g   89 (94)
T 1vb7_A           74 IRQSASPLRLQLDRSS   89 (94)
T ss_dssp             HHTCCSSEEEEEECCC
T ss_pred             HHhCCCcEEEEEEECC
Confidence            9986689999998753

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.22  E-value=2e-11  Score=101.58  Aligned_cols=81  Identities=25%  Similarity=0.450  Sum_probs=71.0

Q ss_pred             CcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHH
Q psy2827           8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVV   86 (373)
Q Consensus         8 ~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~   86 (373)
                      ....+.+.++..++||++.+.               .++++|..|.++|||++|| |++||+|++|||.++.+.+|.++.
T Consensus        27 ~~~~~~l~k~~~glG~~i~~~---------------~~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~   91 (126)
T 1wif_A           27 KVIQTKLTVGNLGLGLVVIQN---------------GPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFL   91 (126)
T ss_dssp             CEEEEEEECCTTCCCCCEEEE---------------TTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHH
T ss_pred             ceEEEEEecCCceEeEEEEcC---------------CCcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHH
Confidence            556788899999999999774               2345799999999999999 999999999999999877799999


Q ss_pred             HHHHh--CCCeEEEEEEec
Q psy2827          87 ELIKS--GGDVLSLTVISV  103 (373)
Q Consensus        87 ~~i~~--~g~~v~l~V~r~  103 (373)
                      .+++.  .|+.++|+|.|.
T Consensus        92 ~~l~~~~~G~~v~l~V~R~  110 (126)
T 1wif_A           92 KLLQNITIGTVLQIKAYRG  110 (126)
T ss_dssp             HHHTSCCSSCEEEEEEESS
T ss_pred             HHHhcCCCCCEEEEEEEEC
Confidence            99997  589999999885

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.20  E-value=5e-11  Score=94.85  Aligned_cols=87  Identities=23%  Similarity=0.374  Sum_probs=71.1

Q ss_pred             CCCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHc-CCCCCCEEEEECCEEcCCCCH
Q psy2827           5 QQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA-GIRKGDRILAVNNVNVEGATH   82 (373)
Q Consensus         5 ~~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~a-GL~~GD~Il~InG~~v~~~s~   82 (373)
                      .+...+++++.+.+ .+|||++.++.+.            ..+++|..|.++|||+++ ||++||+|++|||+++.+. +
T Consensus         6 ~~~~~~~~~v~~~~~~~~G~~~~gg~~~------------~~~v~V~~V~~~spA~~agGL~~GD~I~~ing~~v~~~-~   72 (100)
T 2edp_A            6 SGGSFQYVPVQLQGGAPWGFTLKGGLEH------------CEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGS-R   72 (100)
T ss_dssp             CCCCCEEEEEECCSCSCCCCCEEEEGGG------------TEEEEECCCCTTSHHHHHTSCCTTCEEEEETTEECCSC-S
T ss_pred             CCCCcEEEEEEECCCCCcCEEEeccCCC------------CCCeEEEEECCCCHHHHcCCCCCCCEEEEECCEEccch-H
Confidence            45566778887654 5899999886432            123479999999999999 9999999999999999985 7


Q ss_pred             HHHHHHHHhCCCeEEEEEEecC
Q psy2827          83 KQVVELIKSGGDVLSLTVISVS  104 (373)
Q Consensus        83 ~~~~~~i~~~g~~v~l~V~r~~  104 (373)
                      .++...++..++.+.|+|.|..
T Consensus        73 ~~~~~~~~~~~~~v~l~v~R~~   94 (100)
T 2edp_A           73 QEALILIKGSFRILKLIVRRRN   94 (100)
T ss_dssp             HHHHHHHHTCCSSCEEEEEECC
T ss_pred             HHHHHHHHhCCCeEEEEEEeCC
Confidence            8889999887889999998854

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B

Probab=99.20  E-value=2.3e-10  Score=92.74  Aligned_cols=83  Identities=29%  Similarity=0.496  Sum_probs=71.2

Q ss_pred             EEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCC-CCCCEEEEECCEEcCCCCHHHHHH
Q psy2827          10 REVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGI-RKGDRILAVNNVNVEGATHKQVVE   87 (373)
Q Consensus        10 r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL-~~GD~Il~InG~~v~~~s~~~~~~   87 (373)
                      .+|++.|+. .++||++.+..+             .++++|..|.++|||+++|+ ++||+|++|||.++.+++++++..
T Consensus         3 ~~v~l~~~~~~glG~~~~~~~~-------------~~~~~V~~v~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~   69 (112)
T 1qau_A            3 ISVRLFKRKVGGLGFLVKERVS-------------KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALE   69 (112)
T ss_dssp             EEEEEECBTTTBTSEEEEECSS-------------SSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHH
T ss_pred             EEEEEEcCCCCceeEEEEecCC-------------CCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            568888874 789999987632             13458999999999999997 999999999999999999999999


Q ss_pred             HHHh-CCCeEEEEEEecCc
Q psy2827          88 LIKS-GGDVLSLTVISVSP  105 (373)
Q Consensus        88 ~i~~-~g~~v~l~V~r~~~  105 (373)
                      +++. .|+.+.+++.|...
T Consensus        70 ~l~~~~g~~v~l~v~R~g~   88 (112)
T 1qau_A           70 VLRGIASETHVVLILRGPE   88 (112)
T ss_dssp             HHHHSCSSSEEEEEEECCT
T ss_pred             HHHhCCCCcEEEEEEeCCc
Confidence            9987 67899999998543

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.19  E-value=1.6e-10  Score=94.43  Aligned_cols=85  Identities=26%  Similarity=0.370  Sum_probs=70.9

Q ss_pred             CCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHH
Q psy2827           7 TGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVV   86 (373)
Q Consensus         7 ~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~   86 (373)
                      ..++.|++.+...++||++.+..+              .+++|..|.++|||+++||++||+|++|||+++.++++.+..
T Consensus        18 ~~~~~v~l~~~~~~lG~~~~~~~~--------------~gv~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~~~   83 (117)
T 1uit_A           18 EEPRHVKVQKGSEPLGISIVSGEK--------------GGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQAR   83 (117)
T ss_dssp             CCCEEEEEECSSCCCCEEEEECTT--------------SCEEEEEECTTSHHHHHTCCTTCEECEETTEETTTCCHHHHH
T ss_pred             CCCEEEEEEeCCCCccEEEEccCC--------------CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHH
Confidence            356789999998999999987632              245899999999999999999999999999999997777766


Q ss_pred             HHHHhCCCeEEEEEEecCc
Q psy2827          87 ELIKSGGDVLSLTVISVSP  105 (373)
Q Consensus        87 ~~i~~~g~~v~l~V~r~~~  105 (373)
                      ..++..++.+.++|.|...
T Consensus        84 ~~~~~~g~~v~l~v~r~~~  102 (117)
T 1uit_A           84 LIIGQQCDTITILAQYNPH  102 (117)
T ss_dssp             HHTTSCCSEEEEEECCCSC
T ss_pred             HHHHcCCCeEEEEEEECCc
Confidence            5555678999999987543

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=4.5e-11  Score=97.70  Aligned_cols=88  Identities=26%  Similarity=0.411  Sum_probs=72.0

Q ss_pred             CCCCcEEEEEEcCCC---CccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCC
Q psy2827           5 QQTGPREVQIAKSDT---GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGAT   81 (373)
Q Consensus         5 ~~~~~r~v~l~r~~~---g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s   81 (373)
                      .|..++.+++.|.+.   +|||++.+....+           ..+++|..|.++|||++|||++||+|++|||+++.+++
T Consensus        12 ~~~~~~~v~l~k~~~~~~~~G~~v~~~~~~~-----------~~gv~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~   80 (114)
T 2d8i_A           12 CPKVTQSIHIEKSDTAADTYGFSLSSVEEDG-----------IRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALN   80 (114)
T ss_dssp             SCCEEEEEEEECSCTTTCCCCCEEEEEEETT-----------EEEEEEEECCTTSSHHHHTCCTTCCEEEESSCBGGGCC
T ss_pred             ccCceEEEEEEeCCCCccccCEEEEecCcCC-----------cCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCcC
Confidence            355678999999875   7999998743210           02358999999999999999999999999999999988


Q ss_pred             HHHHHHHHHhCCCeEEEEEEecCc
Q psy2827          82 HKQVVELIKSGGDVLSLTVISVSP  105 (373)
Q Consensus        82 ~~~~~~~i~~~g~~v~l~V~r~~~  105 (373)
                      |.++..+++.  ..+.|+|.|...
T Consensus        81 ~~~~~~~l~~--~~v~l~v~R~p~  102 (114)
T 2d8i_A           81 SSMLKDFLSQ--PSLGLLVRTYPE  102 (114)
T ss_dssp             HHHHHHHHTS--SEEEEEEEECCC
T ss_pred             HHHHHHHHhC--CcEEEEEEECCC
Confidence            9999888875  489999988543

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=99.18  E-value=2.2e-10  Score=102.50  Aligned_cols=91  Identities=16%  Similarity=0.201  Sum_probs=76.6

Q ss_pred             CCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCC--CC
Q psy2827           5 QQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEG--AT   81 (373)
Q Consensus         5 ~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~--~s   81 (373)
                      .+....++++.|+..+|||++.++.+..          ..++++|..|.++|||+++| |++||+|++|||+++.+  .+
T Consensus        15 ~~~~~~~v~~~~~~~~lG~~i~~g~~~~----------~~~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~   84 (206)
T 3r0h_A           15 KPNKKILIELKVEKKPMGVIVCGGKNNH----------VTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMT   84 (206)
T ss_dssp             CTTSCEEEEEECTTSCCCEEEECCSSSS----------CCSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCGGGSC
T ss_pred             CCCCEEEEEEEeCCCCcCEEEecccCCC----------CCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCCCccC
Confidence            3456788999999999999999874321          11456899999999999998 99999999999999999  89


Q ss_pred             HHHHHHHHHhCCCe-EEEEEEecCc
Q psy2827          82 HKQVVELIKSGGDV-LSLTVISVSP  105 (373)
Q Consensus        82 ~~~~~~~i~~~g~~-v~l~V~r~~~  105 (373)
                      |.++...++..+.. +.++|.|...
T Consensus        85 ~~~~~~~~~~~~~~~v~l~v~R~~~  109 (206)
T 3r0h_A           85 TLKVHQLFHTTYEKAVTLTVFRADP  109 (206)
T ss_dssp             HHHHHHHHHSCCSSEEEEEEECCSS
T ss_pred             HHHHHHHHHhcCCCceEEEEEeccc
Confidence            99999999886655 9999988543

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.17  E-value=5.8e-11  Score=94.51  Aligned_cols=89  Identities=36%  Similarity=0.515  Sum_probs=70.4

Q ss_pred             CCCCCCcEEEEEEcC--CCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCC
Q psy2827           3 STQQTGPREVQIAKS--DTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGA   80 (373)
Q Consensus         3 ~~~~~~~r~v~l~r~--~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~   80 (373)
                      +..|...+++++.|.  ..+|||++.+..+.            ..+++|..|.++|||+++||++||+|++|||+++.++
T Consensus         3 ~~~~~~~~~v~l~~~~~~~~lG~~~~~~~~~------------~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~   70 (101)
T 1uez_A            3 SGSSGEVRLVSLRRAKAHEGLGFSIRGGSEH------------GVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARV   70 (101)
T ss_dssp             CCCSCCCEEECCCCCCTTTCSSEEEEECTTT------------TCCEEEEEECTTSHHHHHTCCSSCCEEEETTEECSSC
T ss_pred             CCCCCccEEEEEEECCCCCcccEEEeCCCCC------------CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCc
Confidence            456788899999884  46899999876321            1345899999999999999999999999999999997


Q ss_pred             CHHHHHHHHHhCCCeEEEEEEecC
Q psy2827          81 THKQVVELIKSGGDVLSLTVISVS  104 (373)
Q Consensus        81 s~~~~~~~i~~~g~~v~l~V~r~~  104 (373)
                      ++.++...++ .++.+.++|.|..
T Consensus        71 ~~~~~~~~~~-~~~~v~l~v~R~g   93 (101)
T 1uez_A           71 THAEAVKALK-GSKKLVLSVYSAG   93 (101)
T ss_dssp             CHHHHHHHSS-SSSSCCEEECCCC
T ss_pred             CHHHHHHhhc-CCCeEEEEEEECC
Confidence            7766555543 3567888887643

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A

Probab=99.16  E-value=3.1e-10  Score=93.99  Aligned_cols=82  Identities=24%  Similarity=0.382  Sum_probs=67.2

Q ss_pred             CcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHH
Q psy2827           8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVE   87 (373)
Q Consensus         8 ~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~   87 (373)
                      .++.+.+.+ ..+|||++.++.+              .+++|..|.++|||++|||++||+|++|||.++.+++++++..
T Consensus        29 ~~~~~~~~~-~~~lG~~l~~~~~--------------~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~~~~   93 (124)
T 3tsv_A           29 SMKLVKFRK-GDSVGLRLAGGND--------------VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVL   93 (124)
T ss_dssp             CCEEEEEEC-SSCCCEEEEECTT--------------SCEEEEEECTTCHHHHTTCCTTEEEEEETTEECSSCCHHHHHH
T ss_pred             CeEEEEcCC-CCceeEEEecCCC--------------CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            334444444 4789999987522              3458999999999999999999999999999999988899999


Q ss_pred             HHHh--CCCeEEEEEEecC
Q psy2827          88 LIKS--GGDVLSLTVISVS  104 (373)
Q Consensus        88 ~i~~--~g~~v~l~V~r~~  104 (373)
                      .+.+  .++.+.++|.|..
T Consensus        94 ~l~~~~~g~~v~l~v~R~~  112 (124)
T 3tsv_A           94 FLLDLPKGEEVTILAQKKK  112 (124)
T ss_dssp             HHHHSCTTCEEEEEEEECH
T ss_pred             HHHhcCCCCEEEEEEEECC
Confidence            8885  6899999998854

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.16  E-value=1.1e-10  Score=96.80  Aligned_cols=89  Identities=27%  Similarity=0.455  Sum_probs=76.0

Q ss_pred             CCCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCC-CCCCEEEEECCEEcCCCCH
Q psy2827           5 QQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGI-RKGDRILAVNNVNVEGATH   82 (373)
Q Consensus         5 ~~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL-~~GD~Il~InG~~v~~~s~   82 (373)
                      .+..++.|++.++. .++||++.+..+             ..+++|..|.++|||+++|+ ++||+|++|||+++.++++
T Consensus         5 ~~~~~~~v~l~~~~~~glG~~~~~~~~-------------~~~~~V~~V~~~spA~~aGll~~GD~I~~ing~~v~~~~~   71 (127)
T 1b8q_A            5 IEPNVISVRLFKRKVGGLGFLVKERVS-------------KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSY   71 (127)
T ss_dssp             CCCCSEEEEEECTTTSCCSCCEEECTT-------------SSCEEECCCSSSSSHHHHSSCCTTTCCCEETTEECSSSCH
T ss_pred             cCCceEEEEEEeCCCCcEeEEEEecCC-------------CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            34567889999987 799999987632             13457999999999999998 9999999999999999999


Q ss_pred             HHHHHHHHh-CCCeEEEEEEecCcc
Q psy2827          83 KQVVELIKS-GGDVLSLTVISVSPE  106 (373)
Q Consensus        83 ~~~~~~i~~-~g~~v~l~V~r~~~~  106 (373)
                      .++..+++. .|+.+.+++.|....
T Consensus        72 ~~~~~~l~~~~g~~v~l~v~R~g~~   96 (127)
T 1b8q_A           72 DSALEVLRGIASETHVVLILRGPEG   96 (127)
T ss_dssp             HHHHHHHHSCCSSCEEEEEECCCCS
T ss_pred             HHHHHHHHhCCCCeEEEEEEeCCce
Confidence            999999987 678999999986543

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}

Probab=99.15  E-value=3.7e-10  Score=87.70  Aligned_cols=79  Identities=25%  Similarity=0.343  Sum_probs=64.6

Q ss_pred             EEEEEEcCCC---CccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHH
Q psy2827          10 REVQIAKSDT---GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVV   86 (373)
Q Consensus        10 r~v~l~r~~~---g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~   86 (373)
                      ..+.+.+.+.   ++||++...               ..+++|..|.++|||+++||++||+|++|||.++.+.++.++.
T Consensus         5 ~~~~~~~~~~~~~~lG~~~~~~---------------~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~   69 (90)
T 2eaq_A            5 MRISINQTPGKSLDFGFTIKWD---------------IPGIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKEWE   69 (90)
T ss_dssp             EEEEEECCTTCSSCCSEEEEEE---------------TTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECCTTCHHHHH
T ss_pred             eEEEEEecCCCCCcccEEEEec---------------CCCEEEEEECCCChHHHcCCCCCCEEEEECCEEccCCCHHHHH
Confidence            4566666653   599988754               2345899999999999999999999999999999555599999


Q ss_pred             HHHHh--CCCeEEEEEEec
Q psy2827          87 ELIKS--GGDVLSLTVISV  103 (373)
Q Consensus        87 ~~i~~--~g~~v~l~V~r~  103 (373)
                      .+++.  .++.+.++|.|.
T Consensus        70 ~~l~~~~~g~~v~l~v~R~   88 (90)
T 2eaq_A           70 EAMAKAQETGHLVMDVRRY   88 (90)
T ss_dssp             HHHHHHHHHTEEEEEEEEE
T ss_pred             HHHHhcCCCCEEEEEEEeC
Confidence            99985  588999999874

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=99.15  E-value=3.5e-10  Score=100.97  Aligned_cols=90  Identities=29%  Similarity=0.458  Sum_probs=75.0

Q ss_pred             CCCCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHc-CCCCCCEEEEECCEEcCCCC
Q psy2827           4 TQQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA-GIRKGDRILAVNNVNVEGAT   81 (373)
Q Consensus         4 ~~~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~a-GL~~GD~Il~InG~~v~~~s   81 (373)
                      +....++.|++.|.. .+|||++.++.+.            ..+++|..|.++|||++| ||++||+|++|||+++.+++
T Consensus         3 ~~~~~~~~v~l~~~~~~~lG~~i~~~~~~------------~~~~~V~~v~~~spA~~aggl~~GD~I~~vng~~v~~~~   70 (200)
T 2qt5_A            3 GSFKGSTVVELMKKEGTTLGLTVSGGIDK------------DGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFR   70 (200)
T ss_dssp             -CCEEEEEEEEECCTTCCCCEEEECCTTS------------SSCSEEEEECTTSHHHHTTSCCTTCEEEEETTEECTTSC
T ss_pred             cccCCCEEEEEEeCCCCCCCEEEecccCC------------CCCeEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCC
Confidence            345567889998764 6899999986432            123479999999999999 89999999999999999988


Q ss_pred             HHHHHHHHHhCCCeEEEEEEecCc
Q psy2827          82 HKQVVELIKSGGDVLSLTVISVSP  105 (373)
Q Consensus        82 ~~~~~~~i~~~g~~v~l~V~r~~~  105 (373)
                      +.++..+++..++.+.++|.|..+
T Consensus        71 ~~~~~~~~~~~g~~v~l~v~R~~~   94 (200)
T 2qt5_A           71 HDEIISLLKNVGERVVLEVEYELP   94 (200)
T ss_dssp             HHHHHHHHHTCCSEEEEEEEEECC
T ss_pred             HHHHHHHHHhCCCeEEEEEeccCC
Confidence            899999998888999999988543

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A

Probab=99.14  E-value=3.3e-10  Score=92.09  Aligned_cols=86  Identities=24%  Similarity=0.468  Sum_probs=70.2

Q ss_pred             CCCCcEEEEEEcC-CCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHH
Q psy2827           5 QQTGPREVQIAKS-DTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHK   83 (373)
Q Consensus         5 ~~~~~r~v~l~r~-~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~   83 (373)
                      ...+++++++.+. ..+|||++.+..+.            ..+++|..|.+++||+++||++||+|++|||+++.++++.
T Consensus        12 ~~~~~~~v~~~~~~~~~lG~~l~~~~~~------------~~gv~V~~V~~~s~A~~aGL~~GD~Il~vng~~v~~~~~~   79 (114)
T 1x5n_A           12 RENKEKKVFISLVGSRGLGCSISSGPIQ------------KPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHK   79 (114)
T ss_dssp             CCCSSEEEEECCCSSCCCCEEEEECCSS------------SCSEEEEEECTTSTTTTTTCCTTCEEEEETTEETTSCCTT
T ss_pred             CCCCcEEEEEEEcCCCceeEEEeecCCC------------CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHH
Confidence            3456788988654 47899999876321            2346899999999999999999999999999999998777


Q ss_pred             HHHHHHHhCCCeEEEEEEec
Q psy2827          84 QVVELIKSGGDVLSLTVISV  103 (373)
Q Consensus        84 ~~~~~i~~~g~~v~l~V~r~  103 (373)
                      ++...++.. ..+.++|.|.
T Consensus        80 ~~~~~~~~~-~~v~l~v~r~   98 (114)
T 1x5n_A           80 EAVNVLKSS-RSLTISIVAA   98 (114)
T ss_dssp             HHHHHHHHC-SSEEEEECSS
T ss_pred             HHHHHHhcC-CeEEEEEEcC
Confidence            788888775 5788888775

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}

Probab=99.14  E-value=7e-10  Score=86.36  Aligned_cols=79  Identities=23%  Similarity=0.381  Sum_probs=65.0

Q ss_pred             CcEEEEEEcCC--CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHH
Q psy2827           8 GPREVQIAKSD--TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQ   84 (373)
Q Consensus         8 ~~r~v~l~r~~--~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~   84 (373)
                      ++.++++.+..  ..|||.+..+                  ++|..|.++|||+++| |++||+|++|||.++.++++.+
T Consensus         2 ~~~~v~~~~~~~~~~~g~~~~~g------------------v~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~   63 (92)
T 3cyy_A            2 KPTKVTLVKSAKNEEYGLRLASH------------------IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTD   63 (92)
T ss_dssp             CCEEEEEECSSTTSCCCEEEEEE------------------EEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHH
T ss_pred             CcEEEEEEeCCCCCCCCEEEeCC------------------EEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHH
Confidence            45677777654  4688877532                  4799999999999999 9999999999999999667999


Q ss_pred             HHHHHHhCCCeEEEEEEecC
Q psy2827          85 VVELIKSGGDVLSLTVISVS  104 (373)
Q Consensus        85 ~~~~i~~~g~~v~l~V~r~~  104 (373)
                      +..+++..+..+.++|.|.+
T Consensus        64 ~~~~l~~~~~~v~l~v~r~g   83 (92)
T 3cyy_A           64 AKTLIERSKGKLKMVVQRDE   83 (92)
T ss_dssp             HHHHHHTTTTEEEEEEEC--
T ss_pred             HHHHHHcCCCcEEEEEEeCC
Confidence            99999986678999998754

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}

Probab=98.75  E-value=4.3e-12  Score=103.45  Aligned_cols=85  Identities=29%  Similarity=0.511  Sum_probs=70.2

Q ss_pred             CCCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHH-cCCCCCCEEEEECCEEcCCCCH
Q psy2827           5 QQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEK-AGIRKGDRILAVNNVNVEGATH   82 (373)
Q Consensus         5 ~~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~-aGL~~GD~Il~InG~~v~~~s~   82 (373)
                      ....+++|.+.|.. .+|||++.++.+.            ..+++|..|.++|||++ +||++||+|++|||.++.+.++
T Consensus        24 ~~~~~~~v~l~k~~~~glG~~l~~g~~~------------~~gv~V~~V~~~spA~~~aGL~~GD~Il~ING~~v~~~~~   91 (112)
T 2lob_A           24 YFQGIRKVLLLKEDHEGLGISITGGKEH------------GVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKH   91 (112)
Confidence            34567889998876 6899999876432            12347999999999999 9999999999999999988789


Q ss_pred             HHHHHHHHhCCCeEEEEEE
Q psy2827          83 KQVVELIKSGGDVLSLTVI  101 (373)
Q Consensus        83 ~~~~~~i~~~g~~v~l~V~  101 (373)
                      .++...++..+..++++|.
T Consensus        92 ~~~~~~l~~~~~~v~l~V~  110 (112)
T 2lob_A           92 KEAVTILSQQRGEIEFEVV  110 (112)
Confidence            9999999886666777764

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=99.12  E-value=5.1e-10  Score=98.90  Aligned_cols=91  Identities=34%  Similarity=0.492  Sum_probs=74.0

Q ss_pred             CcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHH
Q psy2827           8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVV   86 (373)
Q Consensus         8 ~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~   86 (373)
                      ...++++.+...++||++.+......       .+...+++|..|.++|||+++| |++||+|++|||+++.+++|.++.
T Consensus       100 ~~~~v~l~~~~~~lG~~~~~~~~~~~-------~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~  172 (196)
T 3gsl_A          100 KVMEIKLIKGPKGLGFSIAGGVGNQH-------IPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAV  172 (196)
T ss_dssp             EEEEEEEEEBTTBSCEEEEESBTSCS-------BTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHHHH
T ss_pred             ccEEEEEecCCCCceEEEEccCCCcC-------CCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCCHHHHH
Confidence            34567777888899999987643210       1112456899999999999999 999999999999999999999999


Q ss_pred             HHHHhCCCeEEEEEEecCc
Q psy2827          87 ELIKSGGDVLSLTVISVSP  105 (373)
Q Consensus        87 ~~i~~~g~~v~l~V~r~~~  105 (373)
                      ..+++.++.+.|+|.|...
T Consensus       173 ~~l~~~~~~v~l~v~R~~~  191 (196)
T 3gsl_A          173 AALKNTYDVVYLKVAKPSN  191 (196)
T ss_dssp             HHHHSCCEEEEEEEEEESC
T ss_pred             HHHHcCCCeEEEEEeCCCC
Confidence            9999888999999988543

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.12  E-value=6.3e-11  Score=94.76  Aligned_cols=85  Identities=22%  Similarity=0.350  Sum_probs=69.8

Q ss_pred             CcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHH
Q psy2827           8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVE   87 (373)
Q Consensus         8 ~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~   87 (373)
                      .++++.+ ++..+|||++.++.+.            ..+++|..|.++|||++|||++||+|++|||+++.++++.++..
T Consensus         5 ~~~~v~~-~~~~~lG~~l~~g~~~------------~~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~   71 (103)
T 1v5l_A            5 SSGNVVL-PGPAPWGFRLSGGIDF------------NQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQD   71 (103)
T ss_dssp             CCBCCEE-ESSSCCSBCCEEETTT------------TEEEECSCBCTTSTTGGGTCCTTCBEEEETTEECSSCCHHHHHH
T ss_pred             CEEEEEE-cCCCCcCEEEeccccC------------CCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            3455555 4557899999876432            12347899999999999999999999999999999999999999


Q ss_pred             HHHhCCCeEEEEEEecCc
Q psy2827          88 LIKSGGDVLSLTVISVSP  105 (373)
Q Consensus        88 ~i~~~g~~v~l~V~r~~~  105 (373)
                      +++..++.+.++|.|...
T Consensus        72 ~l~~~g~~v~l~v~R~g~   89 (103)
T 1v5l_A           72 RIKAASYQLCLKIDRAET   89 (103)
T ss_dssp             HHTTCCSEEECEECCCTT
T ss_pred             HHHhCCCeEEEEEEECCe
Confidence            998888999999987543

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=99.11  E-value=9.7e-11  Score=106.32  Aligned_cols=85  Identities=38%  Similarity=0.575  Sum_probs=73.1

Q ss_pred             CCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHH
Q psy2827           5 QQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQ   84 (373)
Q Consensus         5 ~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~   84 (373)
                      ...++|.|+|.++..||||++.+..+             .++++|..|.+||||+++||++||+|++|||+++.++++.+
T Consensus         6 ~~~~~r~v~l~k~~~glG~~l~~~~~-------------~~gv~V~~V~~gSpA~~aGL~~GD~Il~VNG~~V~~~s~~d   72 (216)
T 2krg_A            6 TMLRPRLCTMKKGPSGYGFNLHSDKS-------------KPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGD   72 (216)
T ss_dssp             TTCCCEEEEEECCSSSSCEEECCCSS-------------SCSCBEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCTHH
T ss_pred             cccceEEEEEEeCCCCceEEEEecCC-------------CCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHH
Confidence            45678999999999999999987632             23457999999999999999999999999999999777999


Q ss_pred             HHHHHHhCCCeE-EEEEEe
Q psy2827          85 VVELIKSGGDVL-SLTVIS  102 (373)
Q Consensus        85 ~~~~i~~~g~~v-~l~V~r  102 (373)
                      +..+++..|..+ .++|.|
T Consensus        73 l~~~l~~~g~~v~~l~V~R   91 (216)
T 2krg_A           73 VVSAIRAGGDETKLLVVDR   91 (216)
T ss_dssp             HHHHHHHHCSEEEEEECCH
T ss_pred             HHHHHHhcCCeEEEEEEEE
Confidence            999998767788 787765

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=99.10  E-value=5.2e-10  Score=99.64  Aligned_cols=91  Identities=25%  Similarity=0.427  Sum_probs=75.0

Q ss_pred             CCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHH
Q psy2827           7 TGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQ   84 (373)
Q Consensus         7 ~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~   84 (373)
                      ...++|+|.|+. .+|||++.++.+...        ...++++|..|.++|||++|| |++||+|++|||+++.+.+|.+
T Consensus         5 ~~~~~v~l~~~~~~glG~~i~~~~~~~~--------~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~   76 (196)
T 1p1d_A            5 TETTEVVLTADPVTGFGIQLQGSVFATE--------TLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEE   76 (196)
T ss_dssp             CEEEEEEEECBTTTBCCCEEEECSSCSS--------SCSCSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHH
T ss_pred             cEEEEEEEEeCCCCccCEEEeCCcCCCC--------CCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHH
Confidence            356789999986 789999998743211        012345899999999999999 9999999999999999777999


Q ss_pred             HHHHHHhC--CCeEEEEEEecCc
Q psy2827          85 VVELIKSG--GDVLSLTVISVSP  105 (373)
Q Consensus        85 ~~~~i~~~--g~~v~l~V~r~~~  105 (373)
                      +..+++..  +..+.+++.|...
T Consensus        77 ~~~~l~~~~~g~~v~l~v~R~~~   99 (196)
T 1p1d_A           77 ANQLLRDSSITSKVTLEIEFDVA   99 (196)
T ss_dssp             HHHHHHTCCSSSEEEEEEEECSC
T ss_pred             HHHHHHhCCCCCeEEEEEEecCC
Confidence            99999984  8899999988653

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.06  E-value=2.2e-09  Score=89.07  Aligned_cols=86  Identities=31%  Similarity=0.467  Sum_probs=68.5

Q ss_pred             CcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHH
Q psy2827           8 GPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVV   86 (373)
Q Consensus         8 ~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~   86 (373)
                      +++++++.... .++||++.+...            +..+++|..|.++|||+++||++||+|++|||.++.++++.++.
T Consensus        20 ~~~~v~v~~~~~~~lG~~~~~~~~------------~~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~   87 (128)
T 1uf1_A           20 DEKKVNLVLGDGRSLGLTIRGGAE------------YGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAV   87 (128)
T ss_dssp             SEEEEEEECCSSCCCCEEEECCTT------------TTCCCEEEEECTTCHHHHHTCCTTCEEEEETTEECSSCCHHHHH
T ss_pred             cEEEEEEEECCCCccCEEEECccc------------CCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHH
Confidence            55677777654 579999877421            12245899999999999999999999999999999998888888


Q ss_pred             HHHHhCCCeEEEEEEecCcc
Q psy2827          87 ELIKSGGDVLSLTVISVSPE  106 (373)
Q Consensus        87 ~~i~~~g~~v~l~V~r~~~~  106 (373)
                      ..++. ++.+.++|.|....
T Consensus        88 ~~~~~-~~~v~l~v~R~g~~  106 (128)
T 1uf1_A           88 RLLKS-SRHLILTVKDVGRL  106 (128)
T ss_dssp             HHHTT-CSEEEEEEECCSCC
T ss_pred             HHHhc-CCeEEEEEEECCcc
Confidence            77766 56899999886543

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=99.05  E-value=2e-09  Score=93.32  Aligned_cols=81  Identities=26%  Similarity=0.424  Sum_probs=67.6

Q ss_pred             CCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHH
Q psy2827           7 TGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQV   85 (373)
Q Consensus         7 ~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~   85 (373)
                      .++|+|++.|+. .++||++...               ..+++|..|.++|||++|||++||+|++|||+++.+++.+..
T Consensus         3 ~~~r~v~l~k~~~~~lG~~~~~~---------------~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~   67 (166)
T 1w9e_A            3 MDPREVILCKDQDGKIGLRLKSI---------------DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKA   67 (166)
T ss_dssp             CCCEEEEEECCTTSCCSEEEEEE---------------TTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHH
T ss_pred             CCCEEEEEEeCCCCcEeEEEEeC---------------CCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHH
Confidence            578999999976 4799999875               134589999999999999999999999999999999665556


Q ss_pred             HHHHHh-CCCeEEEEEEe
Q psy2827          86 VELIKS-GGDVLSLTVIS  102 (373)
Q Consensus        86 ~~~i~~-~g~~v~l~V~r  102 (373)
                      ..+++. .++.+.+++.+
T Consensus        68 ~~~~~~~~~~~v~l~vr~   85 (166)
T 1w9e_A           68 HKVLKQAFGEKITMTIRD   85 (166)
T ss_dssp             HHHHHHCCSSEEEEEEEC
T ss_pred             HHHHhcCCCCEEEEEEEc
Confidence            666766 57799999944

>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}

Probab=99.02  E-value=6.4e-10  Score=109.56  Aligned_cols=126  Identities=10%  Similarity=-0.014  Sum_probs=98.2

Q ss_pred             CCCceEEEEEEecCCHHHHHHHhc--cccCCCchhhhchhheeeeeccceeeccCcCCCCceeeeccccCCC---CceEE
Q psy2827         222 PDREVITVSVRKSATADEVYASAV--PKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQNYSTAS---ATCLC  296 (373)
Q Consensus       222 PDGg~i~ie~~~~~~~~~~~~~~~--~~igl~~~~~l~~f~lf~~~~~~~~r~l~~~e~p~~~~~~~~~~~~---~~~~~  296 (373)
                      |||+..+|.+..+.++.+++..++  .++|+ .+....+|+|++....+-..++.+.+.|..-.++++.+..   ...+.
T Consensus        35 ~~~~~k~v~~d~~ttV~dVi~~i~~~~kiG~-~i~~~~~FgL~~~~~~~~~~~wL~~~~~l~~v~~k~~~~~~~~~~~~~  113 (392)
T 4eku_A           35 PGKNFKLVKCTVQTEIREIITSILLSGRIGP-NIRLAECYGLRLKHMKSDEIHWLHPQMTVGEVQDKYECLHVEAEWRYD  113 (392)
T ss_dssp             GGGEEEEEEEETTCBHHHHHHHHHHTTTTCS-SCCCGGGEEEEEEESSSCCEEEECTTSBHHHHHHHSTTTSCGGGEEEE
T ss_pred             CCCCeEEEEeCCCCcHHHHHHHHHHHhhcCC-CcCccceEEEEEEECCCCceEECCCCCcHHHHHhhhhhccCCCceEEE
Confidence            899999999999999999999999  78998 6667889999987533223344555555332334554332   22488


Q ss_pred             EEeeccCChhhhhcccCChHHHHHHHHHHHHHHhcCC-ccch-hhHHHHHHHHhc
Q psy2827         297 IRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQ-IRAE-DRLYELKALQDA  349 (373)
Q Consensus       297 lrk~~~~~~~~~~l~~~d~~a~~~ly~Q~~~dv~~~~-~~~~-~~~~~L~~lq~~  349 (373)
                      ||+.|| |++...|..+|+++++|||.|..+|+.+|+ ..++ |...+|++|+-|
T Consensus       114 fRvrF~-p~d~~~l~~~D~~~~~ylY~Q~r~D~l~g~~~~~~~e~al~LAaL~~q  167 (392)
T 4eku_A          114 LQIRYL-PEDFMESLKEDRTTLLYFYQQLRNDYMQRYASKVSEGMALQLGCLELR  167 (392)
T ss_dssp             EEECSC-CTTTHHHHTTCHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEE-cCCHHHhhhcChHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            999987 888888887799999999999999999998 3455 889999999876

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=99.02  E-value=1.4e-09  Score=109.20  Aligned_cols=81  Identities=25%  Similarity=0.386  Sum_probs=72.8

Q ss_pred             cEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHH
Q psy2827           9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVEL   88 (373)
Q Consensus         9 ~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~   88 (373)
                      +|.|++.|+ .+|||++.++..              .+++|..|.+||||+++||++||+|++|||.++.+++++++..+
T Consensus         2 ~r~V~l~k~-~~lG~~i~gg~~--------------~Gi~V~~V~~gspA~~aGL~~GD~Il~VNG~~v~~~t~~e~~~~   66 (468)
T 3shw_A            2 MKLVKFRKG-DSVGLRLAGGND--------------VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLF   66 (468)
T ss_dssp             EEEEEEECC-SSCCEEEEEETT--------------TEEEEEEECSSSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHH
T ss_pred             ceEEEEecC-CccceEEEccCc--------------CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            688999997 889999988632              34689999999999999999999999999999999999999999


Q ss_pred             HHh--CCCeEEEEEEecC
Q psy2827          89 IKS--GGDVLSLTVISVS  104 (373)
Q Consensus        89 i~~--~g~~v~l~V~r~~  104 (373)
                      ++.  +|..++|+|.+.+
T Consensus        67 L~~~~~g~~v~L~V~r~g   84 (468)
T 3shw_A           67 LLDLPKGEEVTILAQKKK   84 (468)
T ss_dssp             HHHSCTTSEEEEEEEECH
T ss_pred             HHhcCCCCEEEEEEEECC
Confidence            998  7899999999854

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.01  E-value=9.6e-10  Score=90.88  Aligned_cols=87  Identities=24%  Similarity=0.363  Sum_probs=69.5

Q ss_pred             CcEEEEEEcCCC--CccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHH
Q psy2827           8 GPREVQIAKSDT--GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQ   84 (373)
Q Consensus         8 ~~r~v~l~r~~~--g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~   84 (373)
                      ..+.+++.+.+.  ++||++.......          ...+++|..|.++|||+++| |++||+|++|||+++.+  +.+
T Consensus        19 ~~~~~~~~~~~~~~~lG~~~~~~~~~~----------~~~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~--~~~   86 (124)
T 1wh1_A           19 ELEEVDLYRMNSQDKLGLTVCYRTDDE----------DDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQN--REE   86 (124)
T ss_dssp             EECCBCCCCSSTTCCCCEEEECCCCCS----------SCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCS--HHH
T ss_pred             eEEEEEEEecCCCCcccEEEEecCCCC----------CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCC--HHH
Confidence            344566666654  7999998753210          12456899999999999999 99999999999999998  999


Q ss_pred             HHHHHHh-CCCeEEEEEEecCcc
Q psy2827          85 VVELIKS-GGDVLSLTVISVSPE  106 (373)
Q Consensus        85 ~~~~i~~-~g~~v~l~V~r~~~~  106 (373)
                      +..+++. .+..+.|+|.|....
T Consensus        87 ~~~~l~~~~g~~v~l~v~R~g~~  109 (124)
T 1wh1_A           87 AVALLTSEENKNFSLLIARPELQ  109 (124)
T ss_dssp             HHHHHTCSSCCSCCEEEEECSSC
T ss_pred             HHHHHHhCCCCEEEEEEEECCEE
Confidence            9999987 588999999986543

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.01  E-value=2.1e-09  Score=88.19  Aligned_cols=93  Identities=25%  Similarity=0.285  Sum_probs=70.4

Q ss_pred             CCCCCcEEEEEEcCC----CCccEEEEecccCCCccccccccccCCceEEEEecC--CCHHHHcCCCCCCEEEEECCEEc
Q psy2827           4 TQQTGPREVQIAKSD----TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLA--GGAAEKAGIRKGDRILAVNNVNV   77 (373)
Q Consensus         4 ~~~~~~r~v~l~r~~----~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~--gspA~~aGL~~GD~Il~InG~~v   77 (373)
                      +....|++|++.+-+    ..+||.+......         .....+++|..|.+  ++||++|||++||+|++|||+++
T Consensus         8 ~~~~~~~~v~l~~~~~~~~g~~G~~v~l~~~~---------~~~~~gv~V~~V~~~~~spA~~aGL~~GD~Il~Vng~~v   78 (118)
T 2yub_A            8 VQDQLPYSVTLISMPATTECRRGFSVTVESAS---------SNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPV   78 (118)
T ss_dssp             CSCCSCCEEEEEEECSCSSSSCSSEEEEECTT---------SSSCCEEEEEECCTTTSCTTHHHHCCTTCCEEEESSSBT
T ss_pred             chhcCCceeEEeccCCccCCCceEEEEecccc---------ccCCCcEEEEEecCCCCChHHHcCCCCCCEEEEECCEEC
Confidence            444567888888632    2366666533110         11134668999999  99999999999999999999999


Q ss_pred             CCCCHHHHHHHHHhCCCeEEEEEEecCc
Q psy2827          78 EGATHKQVVELIKSGGDVLSLTVISVSP  105 (373)
Q Consensus        78 ~~~s~~~~~~~i~~~g~~v~l~V~r~~~  105 (373)
                      .++++.++...++..++.+.++|.|...
T Consensus        79 ~~~~~~dl~~~l~~~g~~v~l~v~R~g~  106 (118)
T 2yub_A           79 RTLRVEEVEDAIKQTSQTLQLLIEHDPV  106 (118)
T ss_dssp             TTSCHHHHHHHHHCCSSCEEEEEEECSS
T ss_pred             CCcCHHHHHHHHHhCCCEEEEEEEECCE
Confidence            9966699999998777889999988544

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=99.00  E-value=2.5e-09  Score=95.63  Aligned_cols=62  Identities=21%  Similarity=0.302  Sum_probs=56.2

Q ss_pred             CceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCeEEEEEEecCcc
Q psy2827          45 PLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPE  106 (373)
Q Consensus        45 p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~~~i~~~g~~v~l~V~r~~~~  106 (373)
                      .+++|..|.++|||+++| |++||+|++|||+++.++++.++..+++..++.+.|+|.|..+.
T Consensus       136 ~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~V~R~~~~  198 (206)
T 3r0h_A          136 IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTRPKPT  198 (206)
T ss_dssp             SCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEEECCC
T ss_pred             ceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCCC
Confidence            346899999999999999 99999999999999998889999999998888999999986553

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A

Probab=99.00  E-value=5.1e-09  Score=79.16  Aligned_cols=56  Identities=23%  Similarity=0.346  Sum_probs=50.8

Q ss_pred             eEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCeEEEEEEe
Q psy2827          47 QHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVIS  102 (373)
Q Consensus        47 ~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~~~i~~~g~~v~l~V~r  102 (373)
                      ++|..|.++|||+++| |++||+|++|||.++.++++.++..+++..+..+.+++.|
T Consensus        23 v~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R   79 (81)
T 2rcz_A           23 IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQR   79 (81)
T ss_dssp             EEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEEEEC
T ss_pred             EEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCeEEEEEEe
Confidence            4799999999999999 9999999999999999767999999998865688888876

>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A

Probab=99.00  E-value=1.7e-09  Score=102.41  Aligned_cols=128  Identities=12%  Similarity=0.138  Sum_probs=95.8

Q ss_pred             ceEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeeccceeeccCcCCCCceeeeccccCCCCc
Q psy2827         214 PVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQNYSTASAT  293 (373)
Q Consensus       214 ~l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~~~~r~l~~~e~p~~~~~~~~~~~~~~  293 (373)
                      ++.+.+.|||| .+.+++....++.++++.++.++||. .  ..+|+||.....+ ....++.+.|..  -|........
T Consensus         1 ~i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~-e--~~~FgL~~~~~~~-~~~wLd~~~~l~--~q~~~~~~~~   73 (294)
T 1ef1_A            1 TISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLR-E--VWFFGLQYQDTKG-FSTWLKLNKKVT--AQDVRKESPL   73 (294)
T ss_dssp             CEEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCC-C--GGGEEEEEEBTTS-CEEECCSSSBGG--GSCBCCCSSE
T ss_pred             CEEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCC-C--cceeEEEEECCCC-ceeecccccCHH--hhccCCCCCE
Confidence            36789999998 67899999999999999999999993 2  3699999864322 233445555532  1111112233


Q ss_pred             eEEEEeeccCChhhhhcccCChHHHHHHHHHHHHHHhcCCccch-hhHHHHHHHHhcc
Q psy2827         294 CLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRAE-DRLYELKALQDAS  350 (373)
Q Consensus       294 ~~~lrk~~~~~~~~~~l~~~d~~a~~~ly~Q~~~dv~~~~~~~~-~~~~~L~~lq~~~  350 (373)
                      ++.+|+.||.+..+..| . |+++.+|+|.|+.+||.+|++.++ +.+.+|+||+-|-
T Consensus        74 ~l~fr~kf~~~~~~~~l-~-~~~~~~l~y~Q~~~dil~g~~~~~~e~a~~Laal~~q~  129 (294)
T 1ef1_A           74 LFKFRAKFYPEDVSEEL-I-QDITQRLFFLQVKEGILNDDIYCPPETAVLLASYAVQS  129 (294)
T ss_dssp             EEEEEESSCCSCHHHHC-C-SHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred             EEEEEEEEECCChHHhh-c-cHHHHHHHHHHHHHHHHcCcccCCHHHHHHHHHHHHHH
Confidence            58899999955444344 5 699999999999999999999987 8999999998753

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=99.00  E-value=2.1e-09  Score=95.32  Aligned_cols=79  Identities=25%  Similarity=0.353  Sum_probs=65.1

Q ss_pred             CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCeEEE
Q psy2827          19 TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSL   98 (373)
Q Consensus        19 ~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~~g~~v~l   98 (373)
                      .||||+|.|+.+.-+..    ......+++|..|.++|||++ ||++||+|++|||+++.+.++.++...++..+..+.|
T Consensus         2 ~g~Gf~i~gg~~~~~~~----~~~~~~g~~V~~v~~~spA~~-gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l   76 (195)
T 2qbw_A            2 PELGFSISGGVGGRGNP----FRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVEL   76 (195)
T ss_dssp             CCSSEEEEECTTSCCCS----SCTTCCSEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEE
T ss_pred             CcccEEEECCcCCCCCc----cccCCCCEEEEEECCCChHHh-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence            58999999985421000    011234678999999999999 9999999999999999999999999999987789999


Q ss_pred             EEEe
Q psy2827          99 TVIS  102 (373)
Q Consensus        99 ~V~r  102 (373)
                      +|.|
T Consensus        77 ~v~r   80 (195)
T 2qbw_A           77 IIVR   80 (195)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9988

>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A

Probab=98.98  E-value=9.2e-10  Score=105.78  Aligned_cols=129  Identities=16%  Similarity=0.203  Sum_probs=101.2

Q ss_pred             eEEEEEcCCCceEEEEEEe--cCCHHHHHHHhccccCCCchhhhchhheeeeeccceeeccCcCCCCceeeeccc-----
Q psy2827         215 VDIKILLPDREVITVSVRK--SATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQNY-----  287 (373)
Q Consensus       215 l~l~nlLPDGg~i~ie~~~--~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~~~~r~l~~~e~p~~~~~~~~-----  287 (373)
                      .-+.++||||+...+++..  ..++.++.    ..+|| ......+|+||.+.. .....|.+.+.|+.. +..+     
T Consensus         6 ~~i~V~l~dg~~~~~~i~~~~~tt~~el~----e~lgL-~~~~~~~FaL~~~~~-~~e~~L~~~~~~~d~-~~~W~~~l~   78 (322)
T 4dxa_B            6 EKVRIYRMDGSYRSVELKHGNNTTVQQIM----EGMRL-SQETQQYFTIWICSE-NLSLQLKPYHKPLQH-VRDWPEILA   78 (322)
T ss_dssp             CEEEEECTTSCEEEEECTTGGGCCHHHHH----TTSSC-CTTGGGGEEEEEECS-SCEEECCTTCCHHHH-HHTHHHHHH
T ss_pred             eEEEEEEECCcEEEEEEcCCCCCcHHHHH----HHhCc-CccccCeeEEEEECC-ccccccCccccHHHH-HHHHHHHHH
Confidence            5689999999999999998  77877774    55888 777889999998854 345668888888642 2211     


Q ss_pred             --c---CC-CCceEEEEeeccCChhhhhcccCChHHHHHHHHHHHHHHhcCCccch-hhHHHHHHHHhccc
Q psy2827         288 --S---TA-SATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRAE-DRLYELKALQDASR  351 (373)
Q Consensus       288 --~---~~-~~~~~~lrk~~~~~~~~~~l~~~d~~a~~~ly~Q~~~dv~~~~~~~~-~~~~~L~~lq~~~~  351 (373)
                        +   .. ....+.+|+.+|-|.+....+. |+++.+++|.|+..||.+|++.|+ +.+.+|+||+-|-.
T Consensus        79 ~~~~~~~~~~~p~l~~rr~~f~~~~~~~~~~-d~~t~~l~y~Q~~~dil~G~~~c~~e~a~~LAAl~~q~e  148 (322)
T 4dxa_B           79 ELTNLDPQRETPQLFLRRDVRLPLEVEKQIE-DPLAILILFDEARYNLLKGFYTAPDAKLITLASLLLQIV  148 (322)
T ss_dssp             HHCSCCCCCCCCEEEEEECTTCCHHHHTTCC-CHHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHH
T ss_pred             HhcCCCCCCCceEEEEEEeeccccccccccc-CHHHHHHHHHHHHHHHHCCcccCCHHHHHHHHHHHHHHH
Confidence              1   11 2235899999999966655567 899999999999999999999987 89999999997633

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=98.97  E-value=3.1e-09  Score=104.73  Aligned_cols=84  Identities=25%  Similarity=0.390  Sum_probs=72.2

Q ss_pred             CCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHH
Q psy2827           7 TGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVV   86 (373)
Q Consensus         7 ~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~   86 (373)
                      ..++.|.+.+++ ++||++.++..              .+++|..|.+||||++|||++||+|++|||.++.+++++++.
T Consensus         8 ~~~~~v~~~k~~-~lG~~i~gg~~--------------~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~e~~   72 (391)
T 3tsz_A            8 PSMKLVKFRKGD-SVGLRLAGGND--------------VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAV   72 (391)
T ss_dssp             -CEEEEEEECCS-SCCEEEEEETT--------------TEEEEEEECTTCHHHHTTCCTTEEEEEETTEECTTCCHHHHH
T ss_pred             CCcEEEEeecCC-ceeEEEEecCC--------------CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHH
Confidence            355778888875 79999988632              346899999999999999999999999999999999999999


Q ss_pred             HHHHh--CCCeEEEEEEecCc
Q psy2827          87 ELIKS--GGDVLSLTVISVSP  105 (373)
Q Consensus        87 ~~i~~--~g~~v~l~V~r~~~  105 (373)
                      ..++.  .|+.++++|.|...
T Consensus        73 ~~l~~~~~g~~v~l~v~r~~~   93 (391)
T 3tsz_A           73 LFLLDLPKGEEVTILAQKKKD   93 (391)
T ss_dssp             HHHHHSCTTSEEEEEEEECHH
T ss_pred             HHHHhhcCCCeEEEEEeeCCc
Confidence            99995  78999999998543

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=98.96  E-value=2.7e-09  Score=113.06  Aligned_cols=94  Identities=30%  Similarity=0.541  Sum_probs=78.9

Q ss_pred             CCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHH
Q psy2827           5 QQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHK   83 (373)
Q Consensus         5 ~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~   83 (373)
                      ....+++|+|.|+..||||+|.|+.+.+..       ...++++|..|.+||||+++| |++||+|++|||+++.++++.
T Consensus        56 ~~~~~~~v~l~k~~~glGf~i~gg~~~~~~-------~~~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~  128 (721)
T 2xkx_A           56 GEMEYEEITLERGNSGLGFSIAGGTDNPHI-------GDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS  128 (721)
T ss_pred             CCceEEEEEEEeCCCCCCEEEeCCcCCccc-------CCCCCeEEEEeCCCCHHHhcCCCCCCCEEEEECCEECCCCCHH
Confidence            345678999999999999999987542110       013456899999999999999 999999999999999999999


Q ss_pred             HHHHHHHhCCCeEEEEEEecCc
Q psy2827          84 QVVELIKSGGDVLSLTVISVSP  105 (373)
Q Consensus        84 ~~~~~i~~~g~~v~l~V~r~~~  105 (373)
                      ++..+++..|..+.++|.|..+
T Consensus       129 ~~~~~l~~~g~~v~l~v~R~~~  150 (721)
T 2xkx_A          129 AAVEALKEAGSIVRLYVMRRKP  150 (721)
T ss_pred             HHHHHhhccccccceEEEeccc
Confidence            9999998888899999987654

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A

Probab=98.95  E-value=4.7e-09  Score=102.72  Aligned_cols=137  Identities=15%  Similarity=0.109  Sum_probs=99.9

Q ss_pred             CccceEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeecc---ceeeccCcCCCCceeeeccc
Q psy2827         211 ISSPVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEY---SFERKLEAKEFPHHLYIQNY  287 (373)
Q Consensus       211 ~~~~l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~---~~~r~l~~~e~p~~~~~~~~  287 (373)
                      ...+..+.+.||||....+++....++.++++.++.++||..   ..+|+||.....   .-..+..+.+.|..    ..
T Consensus        82 ~~~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e---~~~FgL~~~~~~~~~~~~~~wL~~~k~l~----~q  154 (371)
T 3ivf_A           82 RKKQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITN---HDEYSLVRELMEEKKDDELNWLDHGRTLR----EQ  154 (371)
T ss_dssp             EECEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSC---GGGEEEECCC----------CCCTTSBTG----GG
T ss_pred             cCceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCC---ccccEEEEEecccccchHHHHHhcCchhH----hh
Confidence            345588999999999999999999999999999999999932   579999876431   23344445555522    11


Q ss_pred             cCCCCceEEEEeeccCChhhhhcccCChHHHHHHHHHHHHHHhcCCccch-hhHHHHHHHHhccchHHhh
Q psy2827         288 STASATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRAE-DRLYELKALQDASRKHEIT  356 (373)
Q Consensus       288 ~~~~~~~~~lrk~~~~~~~~~~l~~~d~~a~~~ly~Q~~~dv~~~~~~~~-~~~~~L~~lq~~~~~~~~l  356 (373)
                      .......+.||+-|| |.+...+.. |+++.+|+|.|+..||.+|++.|+ +.+.+|+||+-|-.--.|-
T Consensus       155 ~~~~~~~l~frvKf~-~~d~~~~~~-D~~~~~l~y~Q~~~dil~G~~~c~~e~a~~LAAl~~qae~Gd~~  222 (371)
T 3ivf_A          155 GVEEHETLLLRRKFF-YSDQNVDSR-DPVQLNLLYVQARDDILNGSHPVSFDKACEFAGFQCQIQFGPHN  222 (371)
T ss_dssp             TCCTTCEEEEEECCC-CBCSSCBTT-CHHHHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHHCSCC
T ss_pred             CCCCCceEEEEEEEe-cCCccccCC-CHHHHHHHHHHhhHHHhCceeecCHHHHHHHHHHHHHHHhCCCC
Confidence            111233478888777 443444456 999999999999999999999987 8999999999875444443

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=98.93  E-value=9.7e-09  Score=91.51  Aligned_cols=88  Identities=28%  Similarity=0.517  Sum_probs=70.5

Q ss_pred             cEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHH
Q psy2827           9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVE   87 (373)
Q Consensus         9 ~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~~   87 (373)
                      +..+++.+...+|||++.++....        .+...+++|..|.++|||+++| |++||+|++|||.++.+++++++..
T Consensus       107 ~~~v~l~~~~~~lG~~l~~g~~~~--------~~~~~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~  178 (200)
T 2qt5_A          107 TVEVTLHKEGNTFGFVIRGGAHDD--------RNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMS  178 (200)
T ss_dssp             EEEEEEECBTTBCSEEEEEECCSS--------TTTCEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHH
T ss_pred             EEEEEEecCCCCeEEEEECCCCCC--------ccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            445666677778999998653210        0112356899999999999999 9999999999999999667999999


Q ss_pred             HHHhCCCeEEEEEEecC
Q psy2827          88 LIKSGGDVLSLTVISVS  104 (373)
Q Consensus        88 ~i~~~g~~v~l~V~r~~  104 (373)
                      +++..++.+.++|.|..
T Consensus       179 ~l~~~~~~v~l~v~R~~  195 (200)
T 2qt5_A          179 ILKQCGQEATLLIEYDV  195 (200)
T ss_dssp             HHHTTCSEEEEEEEEEE
T ss_pred             HHHcCCCeEEEEEEECC
Confidence            99988899999998853

>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A

Probab=98.93  E-value=6.4e-09  Score=99.40  Aligned_cols=134  Identities=8%  Similarity=0.060  Sum_probs=97.8

Q ss_pred             ccceEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeeccceeeccCcCCCCceeeeccccCCC
Q psy2827         212 SSPVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQNYSTAS  291 (373)
Q Consensus       212 ~~~l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~~~~r~l~~~e~p~~~~~~~~~~~~  291 (373)
                      ..++.+.+.|||| .+.+++....++.++++.++.++||.   -..+|+||.. ..+ .....+.+-+..-  |......
T Consensus        20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~---e~~~FgL~~~-~~~-~~~wL~~~~~i~~--q~~~~~~   91 (314)
T 1h4r_A           20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLR---ETWFFGLQYT-IKD-TVAWLKMDKKVLD--HDVSKEE   91 (314)
T ss_dssp             -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCC---CGGGEEEEEE-ETT-EEEECCTTSBGGG--SSCCCSS
T ss_pred             CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCC---CCccceEEEE-eCC-cCeeCCCccCHHH--cCCCCCC
Confidence            3558899999999 78899999999999999999999993   2679999987 222 2333343433210  1001112


Q ss_pred             CceEEEEeeccCChhhhhcccCChHHHHHHHHHHHHHHhcCCccch-hhHHHHHHHHhccchHHh
Q psy2827         292 ATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRAE-DRLYELKALQDASRKHEI  355 (373)
Q Consensus       292 ~~~~~lrk~~~~~~~~~~l~~~d~~a~~~ly~Q~~~dv~~~~~~~~-~~~~~L~~lq~~~~~~~~  355 (373)
                      ...+.||+-||.+.... .+. |+++.+|+|.|+.+||.+|++.++ +.+.+|+||+-|-.--+|
T Consensus        92 ~~~l~fr~kf~~~~~~~-~l~-~~~~~~l~y~Q~~~dil~g~~~~~~e~a~~Laal~~Qa~~Gd~  154 (314)
T 1h4r_A           92 PVTFHFLAKFYPENAEE-ELV-QEITQHLFFLQVKKQILDEKIYCPPEASVLLASYAVQAKYGDY  154 (314)
T ss_dssp             SEEEEEEESSCCSSHHH-HCC-SHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHCSC
T ss_pred             CEEEEEEEEEecCCchh-hhc-CHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHCCC
Confidence            23488999999655443 455 799999999999999999999987 899999999987443333

>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A

Probab=98.92  E-value=2.5e-09  Score=110.06  Aligned_cols=130  Identities=19%  Similarity=0.244  Sum_probs=101.4

Q ss_pred             cceEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeeccceeeccCcCCCCceeeeccc----c
Q psy2827         213 SPVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQNY----S  288 (373)
Q Consensus       213 ~~l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~~~~r~l~~~e~p~~~~~~~~----~  288 (373)
                      .++.+.++||||....+++....++.++++.++.++|| .. ...+|+||.+. ....+-|.+.|..+-. ++.+    .
T Consensus       215 ~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL-~e-~~~~FgL~~~~-~~~~~~L~~~~~i~D~-~~~we~~~~  290 (555)
T 3au4_A          215 QEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAM-ED-SRNMFALFEYN-GHVDKAIESRTVVADV-LAKFEKLAA  290 (555)
T ss_dssp             CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTC-TT-CCSEEEEEEES-SSCEEECCTTSBHHHH-HHHHHHHTT
T ss_pred             CCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCC-CC-CCCceEEEEEe-CCeeEecCCCCchhHH-HHHHHHHhh
Confidence            35889999999999999999999999999999999999 33 35789999764 4456667777765431 1111    0


Q ss_pred             ----CCCCceEEEEeeccCChhhhhcccCChHHHHHHHHHHHHHHhcCCccch-hhHHHHHHHHhc
Q psy2827         289 ----TASATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRAE-DRLYELKALQDA  349 (373)
Q Consensus       289 ----~~~~~~~~lrk~~~~~~~~~~l~~~d~~a~~~ly~Q~~~dv~~~~~~~~-~~~~~L~~lq~~  349 (373)
                          ......+.+|+++|.+.  ..+.. |+++.+|+|.|++.||.+|++.++ +...+|+||+-|
T Consensus       291 ~~~~~~~~~~l~fR~~ff~~~--~~~~~-d~~~~~lly~Q~~~dil~G~~~~~~e~a~~LAAl~lQ  353 (555)
T 3au4_A          291 TSEVGDLPWKFYFKLYCFLDT--DNVPK-DSVEFAFMFEQAHEAVIHGHHPAPEENLQVLAALRLQ  353 (555)
T ss_dssp             SCCTTCCCCEEEEEEEECSCC--TTCCT-TSHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHH
T ss_pred             ccCCCCCceEEEEEEEeecCc--ccCCc-chHHHHhhHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Confidence                11234589999999543  33555 899999999999999999999986 899999999643

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A

Probab=98.87  E-value=7.3e-09  Score=82.25  Aligned_cols=83  Identities=18%  Similarity=0.188  Sum_probs=62.7

Q ss_pred             CceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecCccccccCCCC-CCCCCee
Q psy2827          45 PLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSPEEAERLEPP-DDHSGYQ  121 (373)
Q Consensus        45 p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~~~~~~~~~~~-~~~~~~~  121 (373)
                      .++.|..|.++|||++ ||++||+|++|||+++.+  ++++...+..  .|+.+.+++.|........+.+. ....+.+
T Consensus         7 ~Gv~V~~V~~~spA~~-GL~~GD~I~~Ing~~v~~--~~dl~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~~~~~~~~   83 (100)
T 3i18_A            7 DGVYVMSVKDDVPAAD-VLHAGDLITEIDGNAFKS--SQEFIDYIHSKKVGDTVKINYKHGDKNEQADIKLTAIDKKGTP   83 (100)
T ss_dssp             CCEEEEEECTTSGGGG-TCCTTCEEEEETTBCCSS--HHHHHHHHHTSCTTCEEEEEEEETTEEEEEEEECEECSTTCCE
T ss_pred             CCEEEEEeCCCCchHH-CCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEEEEECCEEEEEEEEEecCCCCCCc
Confidence            4568999999999995 999999999999999999  9999999987  58899999998654332222221 1113456


Q ss_pred             eeeeeecCC
Q psy2827         122 QIDYTEKRS  130 (373)
Q Consensus       122 ~iGi~~~~~  130 (373)
                      .+|+.+..+
T Consensus        84 ~iGi~~~~~   92 (100)
T 3i18_A           84 GIGITLVDD   92 (100)
T ss_dssp             ECSEEEGGG
T ss_pred             EEeEEEecC
Confidence            788876543

>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A

Probab=98.82  E-value=1.3e-08  Score=96.68  Aligned_cols=130  Identities=13%  Similarity=0.099  Sum_probs=98.4

Q ss_pred             CccceEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeeccceeeccCcCCCCceeeeccccCC
Q psy2827         211 ISSPVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQNYSTA  290 (373)
Q Consensus       211 ~~~~l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~~~~r~l~~~e~p~~~~~~~~~~~  290 (373)
                      ...+..+.+.||||..+.+++....+..++++.++.++||.   -..+|+|+.....+ .+...+.+-|..    .....
T Consensus        14 ~~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~---e~~~FgL~~~~~~~-~~~wLd~~k~i~----~q~~~   85 (296)
T 3qij_A           14 LYFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLL---EEDYFGLAIWDNAT-SKTWLDSAKEIK----KQVRG   85 (296)
T ss_dssp             ---CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCS---SGGGEEEEEEEETT-EEEECCTTSBHH----HHC--
T ss_pred             CCceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCC---CcceeEEEEEcCCC-ccchhccchhHH----HhcCC
Confidence            44568899999999999999999999999999999999993   37789998664332 334445555532    11111


Q ss_pred             CCceEEEEeeccCChhhhhcccCChHHHHHHHHHHHHHHhcCCccch-hhHHHHHHHHhccc
Q psy2827         291 SATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRAE-DRLYELKALQDASR  351 (373)
Q Consensus       291 ~~~~~~lrk~~~~~~~~~~l~~~d~~a~~~ly~Q~~~dv~~~~~~~~-~~~~~L~~lq~~~~  351 (373)
                      ....+.+|+-||.|. +. .+. |+++..|+|.|+..||.+|++.++ +.+.+|+||+-|-.
T Consensus        86 ~~~~l~frvkfy~~~-~~-~l~-~~~tr~l~ylQ~~~dil~G~~~c~~e~a~~LAAl~~Qae  144 (296)
T 3qij_A           86 VPWNFTFNVKFYPPD-PA-QLT-EDITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQSE  144 (296)
T ss_dssp             -CCEEEEEESSCCSC-GG-GSS-CHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEEEEeCCC-ch-hcc-CHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHh
Confidence            234588999999554 44 456 799999999999999999999987 89999999987643

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=98.81  E-value=2.2e-08  Score=103.16  Aligned_cols=129  Identities=9%  Similarity=0.129  Sum_probs=97.3

Q ss_pred             cceEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeeccceeeccCcCCCCceeeeccccCCCC
Q psy2827         213 SPVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQNYSTASA  292 (373)
Q Consensus       213 ~~l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~~~~r~l~~~e~p~~~~~~~~~~~~~  292 (373)
                      .++.+.++|||| .+.+++....++.+++..+|.++||.   -..||+||.....+ ...+.+.+.|..-  |.......
T Consensus         3 k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~---e~~~FGL~~~d~~~-~~~WLd~~k~i~~--q~~~~~~~   75 (575)
T 2i1j_A            3 KSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLR---EVWFFGLQYTDSKG-DLTWIKLYKKVMQ--QDVKKENP   75 (575)
T ss_dssp             CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCC---CGGGEEEEEEBTTS-CEEECCTTSBGGG--SCBCCCSS
T ss_pred             ceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCC---CccceeEEEEecCc-chhHhhccccHHH--hcccCCCC
Confidence            458899999998 67899999999999999999999993   24789998754322 2345566666321  11111122


Q ss_pred             ceEEEEeeccCChhhhhcccCChHHHHHHHHHHHHHHhcCCccch-hhHHHHHHHHhcc
Q psy2827         293 TCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRAE-DRLYELKALQDAS  350 (373)
Q Consensus       293 ~~~~lrk~~~~~~~~~~l~~~d~~a~~~ly~Q~~~dv~~~~~~~~-~~~~~L~~lq~~~  350 (373)
                      ..+.||+.||.|.....| . |+++.+|+|.|+..||.+|++.|+ +...+|++|+-|-
T Consensus        76 ~~L~FRvkfy~~~~~~~l-~-d~~t~~LlYlQvk~dIl~G~l~c~~e~a~~LAAL~lQa  132 (575)
T 2i1j_A           76 LQFKFRAKFYPEDVADEL-I-QEITLKLFYLQVKNAILSDEIYCPPETSVLLASYAVQA  132 (575)
T ss_dssp             EEEEEEESSCCSSHHHHC-C-SHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred             eEEEEEEEEcCCChhhhc-C-CHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence            348899999955444344 5 699999999999999999999987 8999999998763

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=98.77  E-value=2.9e-08  Score=105.17  Aligned_cols=83  Identities=36%  Similarity=0.635  Sum_probs=73.0

Q ss_pred             CcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHH
Q psy2827           8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVV   86 (373)
Q Consensus         8 ~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~   86 (373)
                      .++.|+|.++..+|||++.+..+             ..+++|..|.+||||+++| |++||+|++|||+++.+++++++.
T Consensus       307 ~~~~v~l~~~~~~lG~~i~~~~~-------------~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~e~~  373 (721)
T 2xkx_A          307 EPRRIVIHRGSTGLGFNIVGGED-------------GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAA  373 (721)
T ss_pred             ceEEEEEEECCCCccEEEeccCC-------------CCCeEEEEeCCCChHHhcCCCccCCEEEEECCEECCCCCHHHHH
Confidence            46889999988899999987532             1345899999999999999 999999999999999999999999


Q ss_pred             HHHHhCCCeEEEEEEec
Q psy2827          87 ELIKSGGDVLSLTVISV  103 (373)
Q Consensus        87 ~~i~~~g~~v~l~V~r~  103 (373)
                      .+++..+..+.|+|.|.
T Consensus       374 ~~l~~~~~~v~L~v~r~  390 (721)
T 2xkx_A          374 IALKNAGQTVTIIAQYK  390 (721)
T ss_pred             HHHHhcCCeEEEEEEeC
Confidence            99998888899998764

>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A

Probab=98.77  E-value=8.5e-09  Score=101.10  Aligned_cols=131  Identities=8%  Similarity=-0.035  Sum_probs=94.9

Q ss_pred             eEEEEEcCCCc----eEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeeccceeeccCcCCCCceeeeccccC-
Q psy2827         215 VDIKILLPDRE----VITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQNYST-  289 (373)
Q Consensus       215 l~l~nlLPDGg----~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~~~~r~l~~~e~p~~~~~~~~~~-  289 (373)
                      -.+.++||||+    ...+++....++.++++.++.++|+   ....+|+||.....+=...+.+.+.+..-.+.++.. 
T Consensus         8 ~~l~V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL---~~~~~FgL~~~~~~~~~~~wL~~~~~l~~~~~k~~~~   84 (375)
T 2al6_A            8 KVFHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKV---KNVACYGLRLSHLQSEEVHWLHLDMGVSNVREKFELA   84 (375)
T ss_dssp             EEECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTC---SCGGGEEEEEEETTSSCEEEECTTSBHHHHHHHHHTT
T ss_pred             ceEEEEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCC---CeEeEEEEEEEEcCCCceEeeCCccchhhhhhhhhcc
Confidence            46678999997    8899999999999999999999999   667789999865321112223333332101112211 


Q ss_pred             -C-CCceEEEEeeccCChhhhhcccCChHHHHHHHHHHHHHHhcCCc-cch-hhHHHHHHHHhc
Q psy2827         290 -A-SATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQI-RAE-DRLYELKALQDA  349 (373)
Q Consensus       290 -~-~~~~~~lrk~~~~~~~~~~l~~~d~~a~~~ly~Q~~~dv~~~~~-~~~-~~~~~L~~lq~~  349 (373)
                       . ....+.+|..|| |++...+..+|+++++|+|.|+.+|+.+|++ .++ +.+.+|++|+-|
T Consensus        85 ~~~~~~~l~fRvrF~-~~~~~~l~~~D~~t~~~~y~Q~r~Dil~g~~~~~~~e~al~LAaL~~q  147 (375)
T 2al6_A           85 HPPEEWKYELRIRYL-PKGFLNQFTEDKPTLNFFYQQVKNDYMLEIADQVDQEIALKLGCLEIR  147 (375)
T ss_dssp             SCGGGEEEEEEECCC-CTTHHHHHTTCHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHH
T ss_pred             cCCCceEEEEEEEEe-cCCHHHhhhcCHHHHHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHH
Confidence             1 123488998888 6666666666999999999999999999995 344 899999999885

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A

Probab=98.75  E-value=3.1e-08  Score=77.90  Aligned_cols=55  Identities=20%  Similarity=0.232  Sum_probs=50.0

Q ss_pred             EEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh-C-CCeEEEEEEecC
Q psy2827          48 HVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS-G-GDVLSLTVISVS  104 (373)
Q Consensus        48 ~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~-~-g~~v~l~V~r~~  104 (373)
                      +|..|.++|||++|||++||+|++|||+++.+  |.++...+.. . ++.+.++|.|.+
T Consensus         5 ~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~--~~d~~~~l~~~~~~~~v~l~v~R~g   61 (95)
T 3id1_A            5 VVGEIAANSIAAEAQIAPGTELKAVDGIETPD--WDAVRLQLVDKIGDESTTITVAPFG   61 (95)
T ss_dssp             BEEEECTTSHHHHTTCCTTCEEEEETTEECSS--HHHHHHHHHHTTTCSEEEEEEECTT
T ss_pred             EEEeeCCCCHHHHcCCCCCCEEEEECCEECCC--HHHHHHHHHHhcCCCcEEEEEEECC
Confidence            58999999999999999999999999999999  9999998876 3 478999998864

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=98.74  E-value=8.3e-09  Score=101.61  Aligned_cols=90  Identities=22%  Similarity=0.385  Sum_probs=72.7

Q ss_pred             CCCcEEEEEEcC-CCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHH
Q psy2827           6 QTGPREVQIAKS-DTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHK   83 (373)
Q Consensus         6 ~~~~r~v~l~r~-~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~   83 (373)
                      +...+.|++.|. +.++||++.+...        |  ...|+++|..|.+||||+++| |++||+|++|||+++.++++.
T Consensus       202 ~~~~~~V~i~k~~ge~lG~~i~~~~~--------g--~~~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~  271 (388)
T 3suz_A          202 SENCKELQLEKHKGEILGVVVVESGW--------G--SILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLA  271 (388)
T ss_dssp             SSCCEEEEECCCSSCCCCCCCBCC-------------CCSCCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCST
T ss_pred             cccceEEEEECCCCCceeEEEEecCC--------C--CcCCCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHH
Confidence            345688999987 5789999987421        0  113556799999999999999 999999999999999998889


Q ss_pred             HHHHHHHh--CCCeEEEEEEecCc
Q psy2827          84 QVVELIKS--GGDVLSLTVISVSP  105 (373)
Q Consensus        84 ~~~~~i~~--~g~~v~l~V~r~~~  105 (373)
                      ++..+++.  .+..+.++|.|..+
T Consensus       272 ~~~~~l~~~~~~~~v~l~v~r~~~  295 (388)
T 3suz_A          272 TCQGIIKGLKNQTQVKLNIVSCPP  295 (388)
T ss_dssp             THHHHTTTCTTCSCEEEEEEECCS
T ss_pred             HHHHHHHhccCCCccccccccccc
Confidence            99999987  45679999988644

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}

Probab=98.72  E-value=3.8e-09  Score=82.63  Aligned_cols=77  Identities=22%  Similarity=0.305  Sum_probs=58.2

Q ss_pred             EEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecCccccccCCC--CCCCCCeeee
Q psy2827          48 HVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSPEEAERLEP--PDDHSGYQQI  123 (373)
Q Consensus        48 ~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~~~~~~~~~~--~~~~~~~~~i  123 (373)
                      .|..|.++|||++ ||++||+|++|||.++.+  +.++..++..  .|+++.++|.|.+......+.+  ..+..+.+.+
T Consensus         4 ~V~~V~~~spA~~-GL~~GD~I~~InG~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~~~~~~gr~~~   80 (91)
T 2kjp_A            4 YASSVVENMPAKG-KIEVGDKIISADGKNYQS--AEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGI   80 (91)
T ss_dssp             SCCCCCCSSCCSS-CCCSSCEEEEETTBCCSS--HHHHHHHHSSCCSSCEECEEEESSSCEECCCEECCCCTTCTTSCSC
T ss_pred             EEEEECCCChHHH-cCCCCCEEEEECCEECCC--HHHHHHHHHcCCCCCEEEEEEEECCEEEEEEEEEeccCCCCCccee
Confidence            5788999999998 999999999999999998  9999999987  4899999999865433222222  1222344566


Q ss_pred             eeee
Q psy2827         124 DYTE  127 (373)
Q Consensus       124 Gi~~  127 (373)
                      |++.
T Consensus        81 ~~~~   84 (91)
T 2kjp_A           81 GVSL   84 (91)
T ss_dssp             CSCC
T ss_pred             EEee
Confidence            6654

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}

Probab=98.70  E-value=1.9e-08  Score=79.02  Aligned_cols=58  Identities=26%  Similarity=0.371  Sum_probs=51.8

Q ss_pred             ceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecCcc
Q psy2827          46 LQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSPE  106 (373)
Q Consensus        46 ~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~~~  106 (373)
                      ++.|..|.++|||++ ||++||.|++|||.++.+  +.++..++..  .|+.+.+++.|.+..
T Consensus         6 Gv~V~~V~~~spA~~-GL~~GD~Il~InG~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~~   65 (94)
T 2kl1_A            6 GVYVMSVLPNMPAAG-RLEAGDRIAAIDGQPINT--SEQIVSYVREKQAGDRVRVTFIRDRKQ   65 (94)
T ss_dssp             CEECCCCCTTSTTBT-TBCTTCEEEEETTBCCCC--HHHHHHHHHHSCTTCCEEEEEEETTEE
T ss_pred             cEEEEEECCCChHHh-CCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEEEEECCEE
Confidence            457889999999998 999999999999999998  9999999987  489999999986543

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A

Probab=98.67  E-value=4.4e-08  Score=75.96  Aligned_cols=56  Identities=27%  Similarity=0.404  Sum_probs=50.7

Q ss_pred             EEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh-CCCeEEEEEEecCc
Q psy2827          48 HVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS-GGDVLSLTVISVSP  105 (373)
Q Consensus        48 ~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~-~g~~v~l~V~r~~~  105 (373)
                      .|..|.++|||+++||++||+|++|||+++.+  +.++...+.. .++.+.+++.|.+.
T Consensus         7 ~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~--~~~~~~~l~~~~g~~v~l~v~R~g~   63 (91)
T 2zpm_A            7 VLENVQPNSAASXAGLQAGDRIVXVDGQPLTQ--WVTFVMLVRDNPGXSLALEIERQGS   63 (91)
T ss_dssp             BCSEECTTSHHHHTTCCTTCEEEEETTEECCC--HHHHHHHHHHCTTCCEEEEEEETTE
T ss_pred             EEEEECCCChHHhcCCCCCCEEEEECCeEcCC--HHHHHHHHhcCCCCeEEEEEEECCe
Confidence            58899999999999999999999999999998  9999999887 57899999988543

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=98.66  E-value=1.4e-07  Score=83.70  Aligned_cols=58  Identities=21%  Similarity=0.484  Sum_probs=53.9

Q ss_pred             ceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCeEEEEEEec
Q psy2827          46 LQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISV  103 (373)
Q Consensus        46 ~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~~~i~~~g~~v~l~V~r~  103 (373)
                      +++|..|.++|||+++| |++||+|++|||.++.+++++++.+++++.++.+.++|.|.
T Consensus       136 gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~  194 (196)
T 1p1d_A          136 PLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIRKD  194 (196)
T ss_dssp             CCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCTTCEEEEEECC
T ss_pred             CEEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEEEeC
Confidence            45899999999999999 99999999999999999899999999998889999999874

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4

Probab=98.66  E-value=8.8e-08  Score=77.42  Aligned_cols=59  Identities=25%  Similarity=0.384  Sum_probs=52.6

Q ss_pred             CCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCeEEEEEEecCc
Q psy2827          44 APLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSP  105 (373)
Q Consensus        44 ~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~~g~~v~l~V~r~~~  105 (373)
                      ..++.|..|.++|||+++||++||.|++|||.++.+  +.++...++. ++.+.+++.|.+.
T Consensus        34 ~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~--~~~~~~~l~~-~~~v~l~v~R~g~   92 (113)
T 2pzd_A           34 QHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQN--AEDVYEAVRT-QSQLAVQIRRGRE   92 (113)
T ss_dssp             SSCEEEEEEBTTSHHHHHTCCTTCEEEEETTEECCS--HHHHHHHHHH-CSSEEEEEEETTE
T ss_pred             CCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCC--HHHHHHHHhC-CCeEEEEEEECCE
Confidence            356789999999999999999999999999999998  9999998887 6889999988543

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5

Probab=98.65  E-value=6.2e-08  Score=74.76  Aligned_cols=56  Identities=25%  Similarity=0.236  Sum_probs=49.1

Q ss_pred             eEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecC
Q psy2827          47 QHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVS  104 (373)
Q Consensus        47 ~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~  104 (373)
                      +.|..+.|+|||+++||++||.|++|||+++.+  |.++..++..  .++.+.+++.|.+
T Consensus        21 ~~V~~~~~~s~A~~aGl~~GD~I~~ing~~v~~--~~d~~~~~~~~~~g~~v~l~v~R~g   78 (87)
T 2i6v_A           21 YRVSPGKDPVLFESIGLQDGDMAVALNGLDLTD--PNVMNTLFQSMNEMTEMSLTVERDG   78 (87)
T ss_dssp             EEEEECSCHHHHHHTTCCTTCEEEEETTEETTC--HHHHHHHHHTGGGCSEEEEEEEETT
T ss_pred             EEEEeCCCCCHHHHCCCCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECC
Confidence            357777888888999999999999999999999  9999988876  5789999998854

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}

Probab=98.63  E-value=8.5e-08  Score=80.27  Aligned_cols=82  Identities=16%  Similarity=0.181  Sum_probs=62.4

Q ss_pred             ccEEEEecccCC-Cccccccccc-cCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeE
Q psy2827          21 FGFNVRGQVSEG-GQLRSINGEL-YAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVL   96 (373)
Q Consensus        21 ~Gfsi~g~~~~~-~~~~~~g~~~-~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v   96 (373)
                      +|+++..-.... ...+.+|+.. ...++.|..|.++|||+ |||++||+|++|||+++.+  +.++...+..  .|+.+
T Consensus        31 LGv~~~~~~~~~~~~~~~lgl~~~~~~g~~V~~V~~~spA~-aGL~~GD~I~~inG~~v~~--~~~l~~~l~~~~~g~~v  107 (134)
T 2l97_A           31 LGIQMVNLSNVSTSDIRRLNIPSNVTSGVIVRSVQSNMPAN-GHLEKYDVITKVDDKEIAS--STDLQSALYNHSIGDTI  107 (134)
T ss_dssp             CCCEEEESSSSCHHHHHHHSSCSSSCSCEEEEECSTTSGGG-TTSCSSCEEEEETTEECCC--HHHHHHHHHHSSTTCEE
T ss_pred             eeEEEEECCchhHHHHHHcCCCcCCCCCEEEEEECCCCchH-HCCCCCCEEEEECCEEcCC--HHHHHHHHHhCCCCCEE
Confidence            777765432110 1233455542 13456899999999999 9999999999999999999  9999998887  58999


Q ss_pred             EEEEEecCc
Q psy2827          97 SLTVISVSP  105 (373)
Q Consensus        97 ~l~V~r~~~  105 (373)
                      +++|.|.+.
T Consensus       108 ~l~v~R~g~  116 (134)
T 2l97_A          108 KITYYRNGK  116 (134)
T ss_dssp             EEEEEETTE
T ss_pred             EEEEEECCE
Confidence            999998553

>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}

Probab=98.62  E-value=1e-07  Score=99.69  Aligned_cols=130  Identities=18%  Similarity=0.194  Sum_probs=95.0

Q ss_pred             ceEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeeccceeeccCcCCCCceeeeccc------
Q psy2827         214 PVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQNY------  287 (373)
Q Consensus       214 ~l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~~~~r~l~~~e~p~~~~~~~~------  287 (373)
                      ++.+.+.||||....+++....++.++++.++.++||.-   ..+|+||.........-+.+.|.-.- .++++      
T Consensus       263 ~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e---~~~FgL~~~~~dk~~sll~~~e~vlD-~l~~~E~~~k~  338 (655)
T 3pvl_A          263 PIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKD---RFGFSLYIALFDKVSSLGSGSDHVMD-AISQCEQYAKE  338 (655)
T ss_dssp             CEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSS---CTTEEEEEEETTEEEEEETSSCBHHH-HHHHHHHHHHT
T ss_pred             ceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcc---cccceeEEecCCceeecccCceEeec-HHHHHHHHHHh
Confidence            478999999999999999999999999999999999933   46999997643222221222321110 00100      


Q ss_pred             ----cCCCCceEEEEeeccCChhhhhcccCChHHHHHHHHHHHHHHhcCCccch-h-hHHHHHHHHhcc
Q psy2827         288 ----STASATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIRAE-D-RLYELKALQDAS  350 (373)
Q Consensus       288 ----~~~~~~~~~lrk~~~~~~~~~~l~~~d~~a~~~ly~Q~~~dv~~~~~~~~-~-~~~~L~~lq~~~  350 (373)
                          .......+.||+.+|.|..  ..+. |+++.+|+|.|++.||.+|++.|+ + .+.+|+||+-|-
T Consensus       339 ~~~~~~~~~~~L~FRvkff~p~~--~~~~-d~it~~LlYlQ~k~dIl~Grlpc~~E~~a~~LAAl~~Qa  404 (655)
T 3pvl_A          339 QGAQERNAPWRLFFRKEVFTPWH--NPSE-DNVATNLIYQQVVRGVKFGEYRCEKEDDLAELASQQYFV  404 (655)
T ss_dssp             TTCCGGGCCCEEEEEECCCCTTC--CGGG-CHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHH
T ss_pred             hccccCCCCeEEEEEEEEecCCc--cccc-CHHHHHHHHHHHhcccccCccCCChHHHHHHHHHHHHHH
Confidence                0112234899999997633  3456 899999999999999999999986 5 899999998754

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}

Probab=98.57  E-value=2e-07  Score=75.29  Aligned_cols=58  Identities=22%  Similarity=0.245  Sum_probs=51.3

Q ss_pred             CceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCeEEEEEEecCc
Q psy2827          45 PLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSP  105 (373)
Q Consensus        45 p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~~g~~v~l~V~r~~~  105 (373)
                      .++.|..|.++|||+++||++||.|++|||+++.+  +.++...+. .++.+.+++.|.+.
T Consensus        35 ~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~--~~~~~~~l~-~g~~v~l~v~R~g~   92 (112)
T 2p3w_A           35 SGIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLVD--SSELQEAVL-TESPLLLEVRRGND   92 (112)
T ss_dssp             SSEEEEEECTTSHHHHHTCCTTCEEEEETTEECCS--HHHHHHHHH-HCSSEEEEEEETTE
T ss_pred             CCeEEEEECCCChHHHCCCCCCCEEEEECCEECCC--HHHHHHHHh-CCCeEEEEEEECCE
Confidence            46789999999999999999999999999999998  999988885 47789999987543

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6

Probab=98.53  E-value=3.1e-07  Score=76.00  Aligned_cols=79  Identities=15%  Similarity=0.198  Sum_probs=59.0

Q ss_pred             CceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecCccccccCCCCCCCCCeee
Q psy2827          45 PLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSPEEAERLEPPDDHSGYQQ  122 (373)
Q Consensus        45 p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~~~~~~~~~~~~~~~~~~~  122 (373)
                      .++.|..|.++|||+++ |++||+|++|||.++.+  +.++...+..  .++.+.++| |.+. ....+.......+.+.
T Consensus        25 ~gv~V~~V~~~spA~~a-L~~GD~Il~InG~~v~~--~~dl~~~l~~~~~g~~v~l~V-R~g~-~~v~l~~~~~~~~~~~   99 (125)
T 2hga_A           25 DGVQIDSVVPGSPASKV-LTPGLVIESINGMPTSN--LTTYSAALKTISVGEVINITT-DQGT-FHLKTGRNPNNSSRAY   99 (125)
T ss_dssp             CCEEEEEECSSSGGGGT-SCTTCEEEEETTEECSS--HHHHHHHHTTCCTTCEEEEEE-TTEE-EEEECCBCSSSCCSCB
T ss_pred             CceEEEEECCCChHHHh-cCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEE-ECCE-EEEEEeccCCCCCceE
Confidence            35689999999999999 99999999999999998  9999999884  588999999 7544 2222222111123346


Q ss_pred             eeeeec
Q psy2827         123 IDYTEK  128 (373)
Q Consensus       123 iGi~~~  128 (373)
                      +|+.+.
T Consensus       100 lGi~~~  105 (125)
T 2hga_A          100 MGIRTS  105 (125)
T ss_dssp             CCEEEE
T ss_pred             EEEEec
Confidence            777654

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5

Probab=98.47  E-value=3e-07  Score=73.48  Aligned_cols=55  Identities=25%  Similarity=0.250  Sum_probs=47.8

Q ss_pred             EEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecC
Q psy2827          48 HVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVS  104 (373)
Q Consensus        48 ~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~  104 (373)
                      .|..+.|+|||+++||++||.|++|||+++.+  |.++..++..  .++.+.++|.|.+
T Consensus        40 ~V~~~~pas~A~~aGl~~GDvI~~ing~~v~~--~~d~~~~~~~~~~g~~v~l~v~R~g   96 (105)
T 2i4s_A           40 RVSPGKDPVLFESIGLQDGDMAVALNGLDLTD--PNVMNTLFQSMNEMTEMSLTVERDG   96 (105)
T ss_dssp             EEEECSCTHHHHHHTCCTTCEEEEETTEETTS--TTHHHHHHHHHTTCSEEEEEEEETT
T ss_pred             EEecCCCCCHHHHcCCCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCeEEEEEEECC
Confidence            46667777888999999999999999999999  8898888875  5889999998854

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=98.39  E-value=2.5e-06  Score=73.55  Aligned_cols=63  Identities=17%  Similarity=0.391  Sum_probs=52.9

Q ss_pred             cccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCeEEEEEE
Q psy2827          37 SINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI  101 (373)
Q Consensus        37 ~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~~g~~v~l~V~  101 (373)
                      .+|+.+. .+ +|..|.++|||+++||++||+|++|||.++.+++...+...+.+.+..+.+++.
T Consensus       101 ~lG~~~~-~g-~v~~v~~~s~a~~aGl~~GD~I~~ing~~v~~~~~~~v~~~v~r~g~~~~l~v~  163 (166)
T 1w9e_A          101 HVGFIFK-NG-KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIM  163 (166)
T ss_dssp             CCSEEEE-TT-EEEEECTTSHHHHTTCCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEE
T ss_pred             cEeEEEe-CC-EEEEEccCCHHHHcCCCCCCEEEEECCEECCCCChHHHHHHHhhCCCEEEEEEE
Confidence            3444433 34 699999999999999999999999999999998888888888888888877764

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=98.37  E-value=5.6e-07  Score=80.90  Aligned_cols=82  Identities=21%  Similarity=0.300  Sum_probs=62.1

Q ss_pred             CceEEEEecCCCHHHHcCCCC-CCEEEEECCEEcCCCCHHHHHHHHHh-CCCeEEEEEEecCcc--ccccCCCCCCCCCe
Q psy2827          45 PLQHVSAVLAGGAAEKAGIRK-GDRILAVNNVNVEGATHKQVVELIKS-GGDVLSLTVISVSPE--EAERLEPPDDHSGY  120 (373)
Q Consensus        45 p~~~V~~V~~gspA~~aGL~~-GD~Il~InG~~v~~~s~~~~~~~i~~-~g~~v~l~V~r~~~~--~~~~~~~~~~~~~~  120 (373)
                      .++.|..|.++|||++|||++ ||.|++|||. +.+  ++++.+.++. .++++.++|.|....  ....+.+.....+.
T Consensus       112 ~Gv~V~~V~~~spA~~aGl~~~GD~I~~ing~-v~~--~~~l~~~l~~~~g~~v~l~v~r~~~~~~~~v~l~p~~~~~g~  188 (209)
T 3rle_A          112 NVWHVLEVESNSPAALAGLRPHSDYIIGADTV-MNE--SEDLFSLIETHEAKPLKLYVYNTDTDNCREVIITPNSAWGGE  188 (209)
T ss_dssp             SCEEEEEECTTSHHHHHTCCTTTEEEEEESSC-CCS--SSCHHHHHHHTTTSCEEEEEEETTTTEEEEEEECCCTTSSSS
T ss_pred             cceEEEEeCCCChHHHCCCCCCCCEEEECCCE-eCC--HHHHHHHHHhCCCCeEEEEEEECCceEEEEEEEEecCCCCCc
Confidence            466899999999999999999 9999999998 877  8999999988 689999999885421  22233332222345


Q ss_pred             eeeeeeecC
Q psy2827         121 QQIDYTEKR  129 (373)
Q Consensus       121 ~~iGi~~~~  129 (373)
                      +.+|+....
T Consensus       189 g~lG~~~~~  197 (209)
T 3rle_A          189 GSLGCGIGY  197 (209)
T ss_dssp             SSSCEEEEC
T ss_pred             eeeeEEecC
Confidence            678876543

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=98.33  E-value=1.1e-06  Score=85.13  Aligned_cols=59  Identities=25%  Similarity=0.381  Sum_probs=54.2

Q ss_pred             CceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecCc
Q psy2827          45 PLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSP  105 (373)
Q Consensus        45 p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~~  105 (373)
                      .+++|..|.++|||++|||++||+|++|||+++.+  +.++...+..  .|+.++++|.|.+.
T Consensus       263 ~G~~V~~V~~~spA~~aGL~~GDvI~~ing~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~  323 (345)
T 3stj_A          263 RGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNS--FAELRSRIATTEPGTKVKLGLLRNGK  323 (345)
T ss_dssp             SSEEEEEECTTSHHHHHTCCTTCEECEETTEECSC--HHHHHHHHHTSCTTCEEEEEEEETTE
T ss_pred             ceEEEEEeccCChHHHcCCCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            46689999999999999999999999999999998  9999999986  68999999998654

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=98.28  E-value=4.6e-06  Score=83.19  Aligned_cols=58  Identities=21%  Similarity=0.383  Sum_probs=53.0

Q ss_pred             ceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCeEEEEEEecCc
Q psy2827          46 LQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSP  105 (373)
Q Consensus        46 ~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~~g~~v~l~V~r~~~  105 (373)
                      +++|..|.++|||+++||++||+|++|||+++.+  ++++.++++..++.+.++|.|...
T Consensus       364 gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~--~~~~~~~l~~~~~~v~l~v~R~g~  421 (436)
T 4a8c_A          364 GIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNS--IAEMRKVLAAKPAIIALQIVRGNE  421 (436)
T ss_pred             CEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCC--HHHHHHHHHhCCCeEEEEEEECCE
Confidence            5689999999999999999999999999999998  999999999866689999988643

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=98.25  E-value=1.3e-07  Score=93.01  Aligned_cols=89  Identities=16%  Similarity=0.300  Sum_probs=7.7

Q ss_pred             CcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHH
Q psy2827           8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVE   87 (373)
Q Consensus         8 ~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~   87 (373)
                      .+-++++.|.+...-+.+...    .....+|+.... + +|..|.++|||+++||++||+|++|||+++.+.+|+++..
T Consensus       284 ~~v~l~v~r~~~~~~v~l~~~----~~~~~lG~~i~~-g-~I~~V~~gs~A~~aGL~~GD~Il~VNg~~v~~~s~~~~~~  357 (388)
T 3suz_A          284 TQVKLNIVSCPPVTTVLIKRP----DLKYQLGFSVQN-G-IICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQ  357 (388)
T ss_dssp             SCEEEEEEECCSCC------------------------------------------------------------------
T ss_pred             CccccccccccccceeeEeec----CCCCccceEEec-C-EEEEeecCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            335566666654443443211    111234444322 2 6889999999999999999999999999999888999999


Q ss_pred             HHHhCCCeEEEEEEe
Q psy2827          88 LIKSGGDVLSLTVIS  102 (373)
Q Consensus        88 ~i~~~g~~v~l~V~r  102 (373)
                      .+++.+..+.++|.+
T Consensus       358 ~l~~~~~~v~L~V~p  372 (388)
T 3suz_A          358 ALSNSVGEIHMKTMP  372 (388)
T ss_dssp             ---------------
T ss_pred             HHHhCCCeEEEEEEe
Confidence            999888888888753

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=98.25  E-value=1.5e-06  Score=82.98  Aligned_cols=59  Identities=24%  Similarity=0.322  Sum_probs=53.8

Q ss_pred             CceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecCc
Q psy2827          45 PLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSP  105 (373)
Q Consensus        45 p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~~  105 (373)
                      .++.|..|.++|||++|||++||+|++|||+++.+  +.++...++.  .|+.+.++|.|.+.
T Consensus       244 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~  304 (318)
T 1te0_A          244 QGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAIS--ALETMDQVAEIRPGSVIPVVVMRDDK  304 (318)
T ss_dssp             CCEEEEEECTTSTTTTTCCCTTCCEEEETTEECCC--HHHHHHHHHTSCTTCEEEEEEESSSC
T ss_pred             CcEEEEEeCCCChHHHCCCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            56789999999999999999999999999999999  9999999986  58999999998543

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=98.24  E-value=2.7e-06  Score=81.45  Aligned_cols=58  Identities=28%  Similarity=0.419  Sum_probs=52.7

Q ss_pred             CceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEe-cC
Q psy2827          45 PLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVIS-VS  104 (373)
Q Consensus        45 p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r-~~  104 (373)
                      .++.|..|.++|||++|||++||+|++|||+++.+  +.++...+..  .|+.++++|.| .+
T Consensus       242 ~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~~g  302 (324)
T 1y8t_A          242 LGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPINS--ADALVAAVRSKAPGATVALTFQDPSG  302 (324)
T ss_dssp             SSEEEEEECTTSTTTTTTCCTTCEEEEETTEECCS--HHHHHHHHHTSCTTCEEEEEEECSSC
T ss_pred             CceEEEEECCCChHHHcCCCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECCC
Confidence            45689999999999999999999999999999999  9999999876  58999999988 54

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=98.24  E-value=1.8e-06  Score=90.45  Aligned_cols=131  Identities=8%  Similarity=-0.036  Sum_probs=98.4

Q ss_pred             EEEEEcCCCc----eEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeeccceeeccCcCCCCceeeeccc---c
Q psy2827         216 DIKILLPDRE----VITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVEYSFERKLEAKEFPHHLYIQNY---S  288 (373)
Q Consensus       216 ~l~nlLPDGg----~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~~~~~r~l~~~e~p~~~~~~~~---~  288 (373)
                      .+.++||||.    ...|++....++.+++..++.++|+   ....||+|.+....+-.+.+.+.+.+..-...+|   .
T Consensus         9 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~v~~~l~i---~~~~~fgL~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~   85 (656)
T 2j0j_A            9 VFHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKV---KNVACYGLRLSHLQSEEVHWLHLDMGVSNVREKFELAH   85 (656)
T ss_dssp             EECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTC---SCGGGEEEEEEESSSCCEEEECTTSBHHHHHHHHTTTS
T ss_pred             heEEeccCCCCCCceeEEEeCCCCcHHHHHHHHHHhcCc---ceeeeEEEEEeecccCceeeeCCCCcHHHHHhhhcccC
Confidence            3557888887    8899999999999999999999998   5567899987544323445556655532111122   1


Q ss_pred             CCCCceEEEEeeccCChhhhhcccCChHHHHHHHHHHHHHHhcCCcc-c-hhhHHHHHHHHhcc
Q psy2827         289 TASATCLCIRKWLFSAPLERSLVANDDRVATFMFWMAIDAVDRGQIR-A-EDRLYELKALQDAS  350 (373)
Q Consensus       289 ~~~~~~~~lrk~~~~~~~~~~l~~~d~~a~~~ly~Q~~~dv~~~~~~-~-~~~~~~L~~lq~~~  350 (373)
                      ......+.||.-|| |++..+|+.+|..++.|+|.|..+|+.+|++. + .+...+|++|.-+.
T Consensus        86 ~~~~~~~~~rvrf~-p~~~~~l~~~d~~~~~ylf~Q~r~D~~~~~~~~~~~~~al~La~l~~~~  148 (656)
T 2j0j_A           86 PPEEWKYELRIRYL-PKGFLNQFTEDKPTLNFFYQQVKNDYMLEIADQVDQEIALKLGCLEIRR  148 (656)
T ss_dssp             CTTSEEEEEEECCC-CTTHHHHHHTCHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHH
T ss_pred             CCcceEEEEEEEEc-CCCHHHHHhccHHHHHHHHHHHHHHHHhcccccccHhHHHHHHHHHHHH
Confidence            11223488888888 88888888879999999999999999999985 4 48999999999743

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=98.23  E-value=3.4e-06  Score=84.50  Aligned_cols=60  Identities=27%  Similarity=0.287  Sum_probs=54.3

Q ss_pred             CceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecCcc
Q psy2827          45 PLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSPE  106 (373)
Q Consensus        45 p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~~~  106 (373)
                      .+++|..|.++|||++|||++||+|++|||+++.+  +.++...+..  .|+.+.++|.|....
T Consensus       282 ~G~~V~~V~~~spA~~aGL~~GDvI~~vnG~~v~~--~~~l~~~l~~~~~g~~v~l~V~R~g~~  343 (451)
T 3pv2_A          282 QGALVSQVNPNSPAELAGLKAGDIITQINDTKITQ--ATQVKTTISLLRVGSTVKIIVERDNKP  343 (451)
T ss_dssp             CCEEEEEECTTSHHHHHTCCTTCEEEEETTEECCS--HHHHHHHHHTSCTTCEEEEEEEETTEE
T ss_pred             ceEEEEecCCCChHHHcCCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence            46789999999999999999999999999999999  9999999986  589999999986543

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A

Probab=98.23  E-value=4.4e-06  Score=82.01  Aligned_cols=60  Identities=28%  Similarity=0.412  Sum_probs=53.5

Q ss_pred             ceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh-CCCeEEEEEEecCc
Q psy2827          46 LQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS-GGDVLSLTVISVSP  105 (373)
Q Consensus        46 ~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~-~g~~v~l~V~r~~~  105 (373)
                      ++.|..|.++|||++|||++||+|++|||+++.+++..++..+++. .|..+.++|.|...
T Consensus       100 ~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~  160 (388)
T 1fc6_A          100 DVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGA  160 (388)
T ss_dssp             CEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETTE
T ss_pred             cEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEeCCC
Confidence            3579999999999999999999999999999999777899888876 68899999988653

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=98.21  E-value=1.5e-06  Score=78.07  Aligned_cols=57  Identities=18%  Similarity=0.236  Sum_probs=47.9

Q ss_pred             ceEEEEecCCCHHHHcCCCCC-CEEEEECCEEcCCCCHHHHHHHH-Hh-CCCeEEEEEEecC
Q psy2827          46 LQHVSAVLAGGAAEKAGIRKG-DRILAVNNVNVEGATHKQVVELI-KS-GGDVLSLTVISVS  104 (373)
Q Consensus        46 ~~~V~~V~~gspA~~aGL~~G-D~Il~InG~~v~~~s~~~~~~~i-~~-~g~~v~l~V~r~~  104 (373)
                      +++|..|.++|||++|||++| |+|++|||+++.+  |.++...+ .. .++.+.++|.|..
T Consensus        17 G~~V~~V~~~SpA~~AGL~~G~D~I~~ing~~v~~--~~~~~~~~~~~~~g~~v~l~v~R~~   76 (209)
T 3rle_A           17 GYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNK--DNDTLKDLLKANVEKPVKMLIYSSK   76 (209)
T ss_dssp             EEEEEEECTTSHHHHTTCCTTTEEEEEETTEECCS--SSSHHHHHHHHTTTSCEEEEEEETT
T ss_pred             EEEEEEECCCCHHHHCCCCcCCeEEEEECCEECcC--HHHHHHHHHhcCCCCEEEEEEEecC
Confidence            568999999999999999999 9999999999998  55554443 33 6899999998753

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}

Probab=98.20  E-value=4.2e-06  Score=86.61  Aligned_cols=58  Identities=21%  Similarity=0.366  Sum_probs=50.3

Q ss_pred             ceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecCcc
Q psy2827          46 LQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSPE  106 (373)
Q Consensus        46 ~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~~~  106 (373)
                      ++.|..|.++|||++|||++||+|++|||.+| +  ..++.++++.  .|+++.++|.|.+..
T Consensus       497 gv~V~~V~~~spA~~AGL~~GD~I~aInG~~v-~--~~~l~~~l~~~~~g~~v~l~v~R~g~~  556 (597)
T 4fgm_A          497 GLDVLNVYHDESAYHAGLSAGDKIIAIDHLQA-T--EQSVKRILERYIPGDTVTIHAFRRDEL  556 (597)
T ss_dssp             EEEEEEECTTSHHHHHTCCTTCEEEEETTEEC-C--TTTHHHHHTTCCTTCEEEEEEEETTEE
T ss_pred             eEEEEEeCCCChHHHCCCCCCCEEEEECCEEC-C--HHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence            45799999999999999999999999999999 4  5677778775  689999999986544

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=98.18  E-value=3.6e-06  Score=80.70  Aligned_cols=58  Identities=26%  Similarity=0.392  Sum_probs=52.5

Q ss_pred             CceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCeEEEEEEecCc
Q psy2827          45 PLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSP  105 (373)
Q Consensus        45 p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~~g~~v~l~V~r~~~  105 (373)
                      .++.|..|.++|||+++||++||.|++|||+++.+  ++++...++. ++.+.++|.|.+.
T Consensus       256 ~gv~V~~V~~~spA~~aGl~~GDvI~~ing~~v~~--~~~l~~~l~~-~~~v~l~v~R~g~  313 (325)
T 1lcy_A          256 HGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQN--AEDVYEAVRT-QSQLAVQIRRGRE  313 (325)
T ss_dssp             SCEEEEEECTTSHHHHHTCCTTCEEEEETTEECCS--HHHHHHHHTT-CSSEEEEEEETTE
T ss_pred             CCeEEEEeCcCChHHHCCCCCCCEEEEECCEEcCC--HHHHHHHHhC-CCeEEEEEEECCE
Confidence            46789999999999999999999999999999998  9999999876 6889999988654

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=98.10  E-value=3e-06  Score=82.03  Aligned_cols=59  Identities=25%  Similarity=0.355  Sum_probs=53.6

Q ss_pred             CceEEEEecCCCHHHHcCCCC-----------CCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecCc
Q psy2827          45 PLQHVSAVLAGGAAEKAGIRK-----------GDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSP  105 (373)
Q Consensus        45 p~~~V~~V~~gspA~~aGL~~-----------GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~~  105 (373)
                      .+++|..|.++|||++|||++           ||+|++|||+++.+  ++++...+..  .|+.++++|.|.+.
T Consensus       251 ~Gv~V~~V~~~spA~~AGl~~~~~~~~~~l~~GDvI~~ing~~v~~--~~dl~~~l~~~~~g~~v~l~v~R~g~  322 (348)
T 3qo6_A          251 SGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSN--GSDLYRILDQCKVGDEVTVEVLRGDH  322 (348)
T ss_dssp             SSEEEEECCSSSHHHHHTCCCCEECSSSCEECCCEECEETTBCCSS--SHHHHHHHTTCCTTCEEEEEEECSSS
T ss_pred             ceEEEEEecCCChHHHcCCccccccccCCCCCCCEEEEECCEEeCC--HHHHHHHHHhCCCcCEEEEEEEECCE
Confidence            467899999999999999999           99999999999999  8999999965  58999999998654

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=98.08  E-value=8.2e-06  Score=81.38  Aligned_cols=60  Identities=25%  Similarity=0.372  Sum_probs=53.7

Q ss_pred             CceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecCcc
Q psy2827          45 PLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSPE  106 (373)
Q Consensus        45 p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~~~  106 (373)
                      .+++|..|.++|||++|||++||+|++|||+++.+  +.++...+..  .|+.+.++|.|....
T Consensus       263 ~G~~V~~V~~~spA~~aGL~~GD~I~~vnG~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~~  324 (436)
T 4a8c_A          263 RGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNS--FAELRSRIATTEPGTKVKLGLLRNGKP  324 (436)
T ss_pred             cceEEEEECCCChHHHCCCCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence            46789999999999999999999999999999999  9999988875  589999999986543

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=98.03  E-value=3.5e-06  Score=83.11  Aligned_cols=56  Identities=25%  Similarity=0.363  Sum_probs=47.5

Q ss_pred             eEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCeEEEEEEecCc
Q psy2827          47 QHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSP  105 (373)
Q Consensus        47 ~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~~g~~v~l~V~r~~~  105 (373)
                      +.|..|.++|||++|||++||+|++|||+++.++  + +..+++..|..+++++.|...
T Consensus        92 ~~V~~V~~gsPA~~AGL~~GD~I~~InG~~v~~~--~-~~~~l~~~g~~v~l~v~R~g~  147 (403)
T 3k50_A           92 ALISYVVPGSPAEEAGLQRGHWIMMMNGDYITKK--V-ESELLQGSTRQLQIGVYKEVV  147 (403)
T ss_dssp             EEEEEECTTSHHHHTTCCTTCEEEEETTBCBCTT--T-GGGGTSCSCEEEEEEEEEEEC
T ss_pred             EEEEEeCCCChHHHcCCCCCCEEEEECCEEccch--h-HHHHhhCCCCEEEEEEEeCCc
Confidence            4799999999999999999999999999999984  2 555665578899999988543

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=98.00  E-value=9e-06  Score=81.44  Aligned_cols=57  Identities=25%  Similarity=0.272  Sum_probs=52.6

Q ss_pred             ceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCeEEEEEEecC
Q psy2827          46 LQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVS  104 (373)
Q Consensus        46 ~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~~g~~v~l~V~r~~  104 (373)
                      +++|..|.++|||+++||++||+|++|||+++.+  ++++.++++..++.+.++|.|..
T Consensus       387 Gv~V~~V~~gspA~~aGL~~GD~I~~Vng~~v~~--~~~~~~~l~~~~~~v~l~v~R~g  443 (451)
T 3pv2_A          387 GVQVVGASENSAGWRAGIRPGDIIISANKKPVTD--VKSLQTIAQEKKKELLVQVLRGP  443 (451)
T ss_dssp             EEEEEEECTTSHHHHHTCCTTCEEEEETTEECCS--HHHHHHHTTSSCSCEEEEEEETT
T ss_pred             ceEEEEECCCCHHHHcCCCCCCEEEEECCEECCC--HHHHHHHHhcCCCeEEEEEEECC
Confidence            5689999999999999999999999999999998  99999999887889999998854

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=97.89  E-value=1.7e-06  Score=83.22  Aligned_cols=58  Identities=22%  Similarity=0.345  Sum_probs=0.0

Q ss_pred             CceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCeEEEEEEecCc
Q psy2827          45 PLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSP  105 (373)
Q Consensus        45 p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~~g~~v~l~V~r~~~  105 (373)
                      .+++|..|.++|||++|||++||+|++|||+++.+  ++++...++. ++.++++|.|.+.
T Consensus       254 ~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~--~~~~~~~l~~-~~~v~l~v~R~g~  311 (332)
T 3num_A          254 SGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVS--ANDVSDVIKR-ESTLNMVVRRGNE  311 (332)
T ss_dssp             -------------------------------------------------------------
T ss_pred             CceEEEEeccCCChHHcCCCCCCEEEEECCEECCC--HHHHHHHHhC-CCeEEEEEEECCE
Confidence            35679999999999999999999999999999988  8999888876 7789999988544

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=97.58  E-value=1.4e-05  Score=80.04  Aligned_cols=59  Identities=27%  Similarity=0.359  Sum_probs=52.7

Q ss_pred             CceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecCc
Q psy2827          45 PLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSP  105 (373)
Q Consensus        45 p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~~  105 (373)
                      .+++|..|.++|||++|||++||+|++|||+++.+  +.++...+..  .|+.+.++|.|...
T Consensus       286 ~G~~V~~V~~gspA~~AGL~~GDvI~~inG~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~  346 (448)
T 1ky9_A          286 RGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISS--FAALRAQVGTMPVGSKLTLGLLRDGK  346 (448)
T ss_dssp             CSEECCCCTTCSSSTTTTCCTTCEECBSSSSBCCS--SHHHHHHTTSSBTTCCCEEEEESSSC
T ss_pred             CceEEEEeccCCHHHHcCCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            36789999999999999999999999999999999  8899988875  58899999988654

>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A

Probab=97.37  E-value=0.00016  Score=58.55  Aligned_cols=59  Identities=32%  Similarity=0.552  Sum_probs=49.2

Q ss_pred             ccceeeeeeehhhhcccccc------------------------------cchhHHHHHhhcHHHHHHHHhchhhhhhhH
Q psy2827         145 DESFVVFNIYMAGRHLCSRR------------------------------LTEQQLDSRRRGLEIYLEKVCAVRVIAESE  194 (373)
Q Consensus       145 ~~~~~~~~i~~~g~l~~~~r------------------------------l~i~q~~~rr~gl~~yl~~v~~~~~i~~s~  194 (373)
                      +..|++|.|+..+.....+|                              .+..-++.||.+|+.||+.++++|.+.+|+
T Consensus        20 ~~~y~~Y~I~v~~~~~V~RRYsdF~~L~~~L~~~~~~~~~P~lP~K~~~~~~~~~ie~Rr~~Le~yL~~l~~~p~l~~s~   99 (115)
T 3lui_A           20 GSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSE   99 (115)
T ss_dssp             -CCEEEEEEEETTEEEEEEEHHHHHHHHHHHHHHHCSTTSCCCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHSHHHHHCH
T ss_pred             CCCEEEEEEEECCeEEEEecHHHHHHHHHHHHHHcCCCcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHcChhhhcCh
Confidence            36788888888776666655                              344456999999999999999999999999


Q ss_pred             HHHHHHHHh
Q psy2827         195 LMQEFLTDA  203 (373)
Q Consensus       195 ~~~~FL~~~  203 (373)
                      .+++||...
T Consensus       100 ~~~~FL~~~  108 (115)
T 3lui_A          100 TFNSFLRRA  108 (115)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHCcC
Confidence            999999986

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=97.36  E-value=2.7e-05  Score=77.90  Aligned_cols=57  Identities=26%  Similarity=0.370  Sum_probs=0.0

Q ss_pred             ceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCeEEEEEEecC
Q psy2827          46 LQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVS  104 (373)
Q Consensus        46 ~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~~g~~v~l~V~r~~  104 (373)
                      +++|..|.++|||+++||++||+|++|||+++.+  ++++.++++.....+.++|.|..
T Consensus       384 gv~V~~V~~gspA~~aGL~~GDiI~~vng~~v~~--~~~l~~~l~~~~~~v~l~v~R~g  440 (448)
T 1ky9_A          384 GVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKN--IAELRKVLDSKPSVLALNIQRGD  440 (448)
T ss_dssp             -----------------------------------------------------------
T ss_pred             eEEEEEecCCCHHHHcCCCCCCEEEEECCEECCC--HHHHHHHHHcCCCeEEEEEEECC
Confidence            4578999999999999999999999999999998  99999999875457888887743

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=97.15  E-value=0.00053  Score=74.99  Aligned_cols=56  Identities=14%  Similarity=0.177  Sum_probs=48.9

Q ss_pred             ceEEEEecCC--------CHHHHcC--CCCCCEEEEECCEEcCCCCHHHHHHHHHh-CCCeEEEEEEecC
Q psy2827          46 LQHVSAVLAG--------GAAEKAG--IRKGDRILAVNNVNVEGATHKQVVELIKS-GGDVLSLTVISVS  104 (373)
Q Consensus        46 ~~~V~~V~~g--------spA~~aG--L~~GD~Il~InG~~v~~~s~~~~~~~i~~-~g~~v~l~V~r~~  104 (373)
                      ++.|..|.+|        |||+++|  |+ ||+|++|||+++.+  +.++..+++. .|..+.++|.|..
T Consensus       749 ~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~--~~~~~~~~~~~~g~~v~l~v~r~~  815 (1045)
T 1k32_A          749 HYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGA--GSNIYRVLSEKAGTSARIRLSGKG  815 (1045)
T ss_dssp             EEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBT--TBCHHHHHHTTTTSEEEEEEECSS
T ss_pred             EEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccc--hhhHHHhhcCCCCCEEEEEEECCC
Confidence            3578899987        9999999  99 99999999999998  5588888887 6899999998754

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=97.08  E-value=0.00049  Score=70.08  Aligned_cols=61  Identities=21%  Similarity=0.302  Sum_probs=48.8

Q ss_pred             CceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCC--------HHHHHHHHHh--CCCeEEEEEEecCcc
Q psy2827          45 PLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGAT--------HKQVVELIKS--GGDVLSLTVISVSPE  106 (373)
Q Consensus        45 p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s--------~~~~~~~i~~--~g~~v~l~V~r~~~~  106 (373)
                      .+++|..|.++|||+++ |++||.|+++||++|.+..        ..++..++..  .|+.++++|.|.+..
T Consensus       277 ~Gv~V~~V~~~spA~~a-l~~GDvI~~idg~~V~~~g~~~~~~~~~~~l~~~v~~~~~Gd~v~l~v~R~Gk~  347 (539)
T 4fln_A          277 EGVLVRRVEPTSDASKV-LKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQKFAGDIAEIGIIRAGEH  347 (539)
T ss_dssp             BCEEEEEECTTSGGGGT-CCTTCEEEEETTEECBSSSEEECSTTCEEETHHHHHTSCTTCEEEEEEEETTEE
T ss_pred             CceeeecccCCChHHhC-ccCCCEEEEECCEEeCcCCeeccccchhHHHHHHHHcCCCCCEEEEEEEECCEE
Confidence            37789999999999876 9999999999999996511        1124566665  699999999997654

>2wwe_A Phosphoinositide-3-kinase, class 2, gamma polypeptide; phosphoprotein, nucleotide-binding, PIK3C2G, membrane, PX-domain, transferase, ATP-binding; 1.25A {Homo sapiens}

Probab=96.90  E-value=0.00072  Score=55.25  Aligned_cols=35  Identities=23%  Similarity=0.400  Sum_probs=30.6

Q ss_pred             chhHHHHHhhcHHHHHHHHhc-hhhhhhhHHHHHHHH
Q psy2827         166 TEQQLDSRRRGLEIYLEKVCA-VRVIAESELMQEFLT  201 (373)
Q Consensus       166 ~i~q~~~rr~gl~~yl~~v~~-~~~i~~s~~~~~FL~  201 (373)
                      +..+.+ ||++|++|+|.+++ ++.|++||.+++|+.
T Consensus        90 t~~~~e-Rr~~Le~Ylq~Ll~~~~~Ia~Sd~v~~Ff~  125 (127)
T 2wwe_A           90 TNSDHR-RFRDLNHYMEQILNVSHEVTNSDCVLSFFL  125 (127)
T ss_dssp             HHCHHH-HHHHHHHHHHHHTTSCHHHHTSHHHHHHHH
T ss_pred             CHHHHH-HHHHHHHHHHHHhcCCceeecCHHHHHHhC
Confidence            344445 99999999999999 799999999999986

>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5

Probab=96.76  E-value=0.0044  Score=48.63  Aligned_cols=89  Identities=22%  Similarity=0.200  Sum_probs=74.1

Q ss_pred             CCccceEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeee-ccceeeccCcCCCCceeeecccc
Q psy2827         210 NISSPVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIV-EYSFERKLEAKEFPHHLYIQNYS  288 (373)
Q Consensus       210 ~~~~~l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~-~~~~~r~l~~~e~p~~~~~~~~~  288 (373)
                      ...+++.+.++..||...++++..+.++.++.+.++.+.++   ..-..++|+... +....|-+.++|.+.. .+..+.
T Consensus         5 ~~~~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~---~~~~~WaLvE~~P~L~~ER~~EDHE~vve-vl~~W~   80 (100)
T 1wgr_A            5 SSGRPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHA---LSDETWGLVECHPHLALERGLEDHESVVE-VQAAWP   80 (100)
T ss_dssp             CCCSCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSC---CCCCCCCEEEEETTTTEEEEECSSSCHHH-HHTTSC
T ss_pred             ccCCCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCC---CCCCCeEEEEecCCCCcEEeccCchhHHH-HHhhCc
Confidence            34567899999999999999999999999999999999988   556677888776 4678999999999976 345566


Q ss_pred             CCCCceEEEEeecc
Q psy2827         289 TASATCLCIRKWLF  302 (373)
Q Consensus       289 ~~~~~~~~lrk~~~  302 (373)
                      ..+.+++.|||-++
T Consensus        81 ~~s~nr~~F~kr~~   94 (100)
T 1wgr_A           81 VGGDSRFVFRKNFA   94 (100)
T ss_dssp             SSSCCEEEECSCCS
T ss_pred             cCCCcEEEEecchh
Confidence            66667799999875

>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton, structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A 2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B

Probab=96.70  E-value=0.0013  Score=58.21  Aligned_cols=47  Identities=15%  Similarity=0.101  Sum_probs=40.0

Q ss_pred             ChhhhhcccCChHHHHHHHHHHHHHHhcCCccch-hhHHHHHHHHhccc
Q psy2827         304 APLERSLVANDDRVATFMFWMAIDAVDRGQIRAE-DRLYELKALQDASR  351 (373)
Q Consensus       304 ~~~~~~l~~~d~~a~~~ly~Q~~~dv~~~~~~~~-~~~~~L~~lq~~~~  351 (373)
                      |.++..+.. |+++.+|+|.|+.+||.+|++.++ +.+.+|+||+.|-.
T Consensus         5 ~~d~~~~~~-d~~~~~l~y~Q~~~dil~g~~~~~~~~a~~Laal~~qa~   52 (206)
T 1mix_A            5 YSDQNVDSR-DPVQLNLLYVQARDDILNGSHPVSFDKACEFAGYQCQIQ   52 (206)
T ss_dssp             CCHHHHHTS-CHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCcC-CHHHHHHHHHHHHHHHHCCccccCHHHHHHHHHHhhhhe
Confidence            445555666 999999999999999999999987 89999999987543

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=96.19  E-value=0.0076  Score=61.32  Aligned_cols=53  Identities=17%  Similarity=0.209  Sum_probs=47.9

Q ss_pred             ceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh-CCCeEEEEE
Q psy2827          46 LQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS-GGDVLSLTV  100 (373)
Q Consensus        46 ~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~-~g~~v~l~V  100 (373)
                      +++|..|.++++|+.+|+++||.|++|||++|.+  ..++.+++++ .++.+.+.+
T Consensus       416 gVvvs~V~~~s~a~~~g~~~gdiI~~vNg~~V~s--~~~l~~~l~~~k~~~l~~~~  469 (539)
T 4fln_A          416 IVILSQVLANEVNIGYEDMNNQQVLKFNGIPIRN--IHHLAHLIDMCKDKYLVFEF  469 (539)
T ss_dssp             CEEEEEECCCGGGTTCSSCCSEEEEEETTEECCS--HHHHHHHHHTCCSSEEEEEE
T ss_pred             EEEEEEecCCchhhhcCCCCCCEEEeECCEEcCC--HHHHHHHHHHcCCCeEEEEE
Confidence            5689999999999999999999999999999999  9999999998 566676665

>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus}

Probab=96.02  E-value=0.0037  Score=56.17  Aligned_cols=43  Identities=16%  Similarity=0.152  Sum_probs=36.3

Q ss_pred             ChHHHHHHHHHHHHHHhcCCccch-hhHHHHHHHHhccchHHhh
Q psy2827         314 DDRVATFMFWMAIDAVDRGQIRAE-DRLYELKALQDASRKHEIT  356 (373)
Q Consensus       314 d~~a~~~ly~Q~~~dv~~~~~~~~-~~~~~L~~lq~~~~~~~~l  356 (373)
                      ||++++|+|.|+..||.+|++.|+ +...+|+||+-|-.--.|-
T Consensus        25 Dp~~l~l~ylQ~~~dil~G~~~~~~e~a~~LAal~~Qae~Gd~~   68 (222)
T 4f7g_A           25 DPVQLNLLYVQARDDILNGSHPVSFDKACEFAGFQCQIQFGPHN   68 (222)
T ss_dssp             -CCHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHCSCC
T ss_pred             CHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHCCCC
Confidence            899999999999999999999987 8999999999874443343

>3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur genomics consortium, protein transport, transport; 1.70A {Homo sapiens}

Probab=94.16  E-value=0.038  Score=45.86  Aligned_cols=38  Identities=21%  Similarity=0.439  Sum_probs=34.0

Q ss_pred             chhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHHh
Q psy2827         166 TEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDA  203 (373)
Q Consensus       166 ~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~~  203 (373)
                      +..-++.||.+|+.||+.++++|.+.+|..++.||..-
T Consensus        87 ~~~fie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~  124 (138)
T 3iq2_A           87 NDDFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTAQ  124 (138)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHSTTGGGCHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHHHHcCHhhhcChHHHhhhCCC
Confidence            34456999999999999999999999999999999865

>4az9_A Sorting nexin-24; protein transport; 1.75A {Homo sapiens}

Probab=92.88  E-value=0.067  Score=43.86  Aligned_cols=37  Identities=32%  Similarity=0.486  Sum_probs=29.9

Q ss_pred             cchhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHH
Q psy2827         165 LTEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTD  202 (373)
Q Consensus       165 l~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~  202 (373)
                      ....-++.||.+|+.||+.++..+.+. +..+.+||..
T Consensus        88 ~~~~~ie~Rr~~Le~yL~~ll~~~~~~-~~~l~~FL~~  124 (129)
T 4az9_A           88 WVPKVLEQRRQGLETYLQAVILENEEL-PKLFLDFLNV  124 (129)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHCSSC-CHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCchhh-CHHHHHHCCC
Confidence            455566999999999999999998875 7777778753

>3p0c_A Nischarin; structural genomics, structural genomics consortium, SGC, PX signaling protein; 2.27A {Homo sapiens}

Probab=92.59  E-value=0.058  Score=44.27  Aligned_cols=35  Identities=26%  Similarity=0.407  Sum_probs=32.3

Q ss_pred             HHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHHh
Q psy2827         169 QLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDA  203 (373)
Q Consensus       169 q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~~  203 (373)
                      -++.||.+|+.||+.+++.|.+.+|+.+.+||..-
T Consensus        90 ~ie~Rr~~Le~yL~~l~~~p~l~~s~~l~~FL~~~  124 (130)
T 3p0c_A           90 LVEKREKDLEVYLQKLLAAFPGVTPRVLAHFLHFH  124 (130)
T ss_dssp             SHHHHHHHHHHHHHHHHHTSCSEECHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHcChhhhcCHHHHHHhCCC
Confidence            35899999999999999999999999999999864

>2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.19  E-value=0.083  Score=44.08  Aligned_cols=38  Identities=24%  Similarity=0.524  Sum_probs=33.8

Q ss_pred             chhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHHh
Q psy2827         166 TEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDA  203 (373)
Q Consensus       166 ~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~~  203 (373)
                      ...-++.||.+|+.||+.++++|.+.+|+.+..||..-
T Consensus        93 ~~~fie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~  130 (146)
T 2csk_A           93 EESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQEE  130 (146)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCHHHHHCHHHHHHTTCS
T ss_pred             CHHHHHHHHHHHHHHHHHHHcChhhccCcHHHhhcCCC
Confidence            44456999999999999999999999999999999764

>2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices, proline rich loop, protein transport; NMR {Homo sapiens}

Probab=92.04  E-value=0.054  Score=43.90  Aligned_cols=36  Identities=28%  Similarity=0.506  Sum_probs=32.2

Q ss_pred             chhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHH
Q psy2827         166 TEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLT  201 (373)
Q Consensus       166 ~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~  201 (373)
                      +..-++.||.+|+.||+.++++|.+.+|+.+..||.
T Consensus        90 ~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~  125 (128)
T 2i4k_A           90 SAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLE  125 (128)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHCHHHHCSHHHHTTTT
T ss_pred             CHHHHHHHHHHHHHHHHHHHcCcccccChHHHHhhC
Confidence            344569999999999999999999999999999985

>1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein; HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP: d.189.1.1 PDB: 1ocu_A*

Probab=91.83  E-value=0.13  Score=43.85  Aligned_cols=38  Identities=18%  Similarity=0.538  Sum_probs=33.4

Q ss_pred             chhHHHHHhhcHHHHHHHHhchhhhhh-hHHHHHHHHHh
Q psy2827         166 TEQQLDSRRRGLEIYLEKVCAVRVIAE-SELMQEFLTDA  203 (373)
Q Consensus       166 ~i~q~~~rr~gl~~yl~~v~~~~~i~~-s~~~~~FL~~~  203 (373)
                      +..-++.||.+|+.||+.++++|.+.+ |+.+..||..-
T Consensus       120 ~~~fie~Rr~~Le~fL~~l~~~p~l~~~s~~l~~FL~~~  158 (162)
T 1ocs_A          120 SNEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRFIEAE  158 (162)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHCS
T ss_pred             CHHHHHHHHHHHHHHHHHHHcCHHhhhCCHHHHHhCCCc
Confidence            444569999999999999999999998 99999999753

>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A

Probab=91.61  E-value=0.39  Score=44.58  Aligned_cols=85  Identities=20%  Similarity=0.194  Sum_probs=68.9

Q ss_pred             ccceEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeec-cceeeccCcCCCCceeeeccccCC
Q psy2827         212 SSPVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVE-YSFERKLEAKEFPHHLYIQNYSTA  290 (373)
Q Consensus       212 ~~~l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~-~~~~r~l~~~e~p~~~~~~~~~~~  290 (373)
                      ...+.+.+++.||..+++++..+.++.++++.++.+.++.   .-...+||.... ...+|.|.++|...- .+..+...
T Consensus        29 ~~k~ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~---~~~~W~L~E~~~~l~lER~ledhE~V~d-vl~~W~~d  104 (281)
T 4gmv_A           29 VKKLVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCG---YSLDWSLVETVSELQMERIFEDHENLVE-NLLNWTRD  104 (281)
T ss_dssp             SCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCC---CCTTCEEEEEEGGGTEEEECCTTSBHHH-HHTTSCTT
T ss_pred             cccEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCC---CCCCeEEEEEcCCccceeccccchhHHH-HHHhcccC
Confidence            3558999999999999999999999999999999999873   456678888764 568999999998865 33455555


Q ss_pred             CCceEEEEee
Q psy2827         291 SATCLCIRKW  300 (373)
Q Consensus       291 ~~~~~~lrk~  300 (373)
                      +.+.+.+||.
T Consensus       105 s~n~l~f~~~  114 (281)
T 4gmv_A          105 SQNKLIFMER  114 (281)
T ss_dssp             CCCEEEEECC
T ss_pred             CCceEEEEec
Confidence            5667889875

>1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase; 1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A

Probab=91.17  E-value=0.13  Score=43.31  Aligned_cols=38  Identities=16%  Similarity=0.302  Sum_probs=33.9

Q ss_pred             chhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHHh
Q psy2827         166 TEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDA  203 (373)
Q Consensus       166 ~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~~  203 (373)
                      +..-++.||.+|+.||+.+++.+.+.+|..+..||..-
T Consensus        77 ~~~~ie~Rr~~Le~yL~~l~~~p~l~~s~~l~~FL~~~  114 (154)
T 1xte_A           77 DPDFIKQRRAGLNEFIQNLVRYPELYNHPDVRAFLQMD  114 (154)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTCHHHHTSHHHHHHTTTT
T ss_pred             CHHHHHHHHHHHHHHHHHHHcChhhccChHHHHHhCCC
Confidence            34456999999999999999999999999999999764

>1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain, phosphoinositide binding, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1

Probab=90.70  E-value=0.17  Score=40.51  Aligned_cols=38  Identities=29%  Similarity=0.522  Sum_probs=32.2

Q ss_pred             chhHHHHHhhcHHHHHHHHhchhh---hhhhHHHHHHHHHh
Q psy2827         166 TEQQLDSRRRGLEIYLEKVCAVRV---IAESELMQEFLTDA  203 (373)
Q Consensus       166 ~i~q~~~rr~gl~~yl~~v~~~~~---i~~s~~~~~FL~~~  203 (373)
                      +..-++.||.+|+.||+.+++++.   +.+|..+.+||..-
T Consensus        74 ~~~~ie~Rr~~Le~yL~~l~~~p~l~~~~~s~~l~~FL~~~  114 (117)
T 1kmd_A           74 DPEMIDERRIGLERFLNELYNDRFDSRWRDTKIAQDFLQLS  114 (117)
T ss_dssp             CHHHHHHHHTTHHHHHHHHHCCSSCCHHHHSHHHHHHTTCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCcchhhhhcCHHHHHhcCCC
Confidence            444569999999999999999984   68999999998653

>1wxa_A Afadin, AF-6 protein; RAS-binding domain, ubiquitin-like fold, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.15.1.5

Probab=90.16  E-value=0.22  Score=40.04  Aligned_cols=72  Identities=15%  Similarity=0.240  Sum_probs=52.9

Q ss_pred             EEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeee----------ccceeeccCcCCCCceeeeccccCC-CCceE
Q psy2827         227 ITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIV----------EYSFERKLEAKEFPHHLYIQNYSTA-SATCL  295 (373)
Q Consensus       227 i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~----------~~~~~r~l~~~e~p~~~~~~~~~~~-~~~~~  295 (373)
                      .+|-+...+++.+++..++.+.|| ...-.--|+|..+.          .....|.|.+.|+|..+ ..++... ...++
T Consensus        26 ksvlvt~~tta~~vV~eaLekygL-~~~~~~~Y~LveV~~~~~~~~~~~~g~~ErvL~~~E~Pl~i-~~~w~~~~g~~~F  103 (116)
T 1wxa_A           26 KTILLSTTDTADFAVAESLEKYGL-EKENPKDYCIARVMLPPGAQHSDERGAKEIILDDDECPLQI-FREWPSDKGILVF  103 (116)
T ss_dssp             EEEECCSSCCHHHHHHHHHHHHTC-SSSCTTTEEEEEEECCSSCCSSSSTTCEEECCCSSCCHHHH-HHTCCGGGCCEEE
T ss_pred             EEEEeCCCCCHHHHHHHHHHHhCC-CCCCchheEEEEEECccccccccCCCceEEECCCCCCHHHH-HHhccccCCceEE
Confidence            377788899999999999999999 55556678888875          23568899999999852 2333332 23457


Q ss_pred             EEEee
Q psy2827         296 CIRKW  300 (373)
Q Consensus       296 ~lrk~  300 (373)
                      .||+-
T Consensus       104 ~Lrrr  108 (116)
T 1wxa_A          104 QLKRR  108 (116)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            78764

>3ddc_B RAS association domain-containing family protein; oncogene, tumorsuppressor, ubiquitin fold, RAS effector, RAP rassf1, rassf5, RAPL, NORE1, GMPPNP; HET: GNP; 1.80A {Mus musculus}

Probab=89.41  E-value=0.39  Score=40.61  Aligned_cols=62  Identities=21%  Similarity=0.349  Sum_probs=50.2

Q ss_pred             EEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheee-eeccc--eeeccCcCCCCce
Q psy2827         218 KILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFE-IVEYS--FERKLEAKEFPHH  281 (373)
Q Consensus       218 ~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~-~~~~~--~~r~l~~~e~p~~  281 (373)
                      -.|||.|....+.+.+..++.+|++.++++...  ...-.-||||. ..+.+  +.|||.+.|+|..
T Consensus        80 SfflP~gs~k~v~VsS~tTt~eVI~~LL~KFkV--~dnP~kFALye~vh~~gev~~RKL~d~E~PL~  144 (163)
T 3ddc_B           80 SFYLPLDAIKQMHISSTTTVSEVIQGLLDKFMV--VDNPQKFALFKRIHKDGQVLFQKLSIADYPLY  144 (163)
T ss_dssp             CEEEEEEEEEEEEEETTCCHHHHHHHHHHHTTC--CSCGGGEEEEEEEEETTEEEEEECCTTCCHHH
T ss_pred             eEECCCCceEEEEEccCCcHHHHHHHHHHHhcc--cCChhheEEEEEEccCCcEEEEECCCcCcCHh
Confidence            457887766699999999999999999999976  34567899999 54433  4899999999964

>1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo sapiens} SCOP: d.189.1.1

Probab=87.81  E-value=0.37  Score=39.84  Aligned_cols=36  Identities=17%  Similarity=0.307  Sum_probs=31.6

Q ss_pred             hHHHHHhhcHHHHHHHHhchhh-hhhhHHHHHHHHHh
Q psy2827         168 QQLDSRRRGLEIYLEKVCAVRV-IAESELMQEFLTDA  203 (373)
Q Consensus       168 ~q~~~rr~gl~~yl~~v~~~~~-i~~s~~~~~FL~~~  203 (373)
                      .-++.||.+|+.||+.+...+. +.+|+.+.+||...
T Consensus        99 ~~ie~Rr~~Le~yL~~ll~~p~~l~~s~~~~~Fl~~~  135 (143)
T 1h6h_A           99 EIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQS  135 (143)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHhhhcCHHHHHHhCCC
Confidence            3459999999999999999887 99999999998653

>2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607, structural genomics,protein structure initiative PSI; NMR {Homo sapiens}

Probab=85.70  E-value=0.42  Score=38.96  Aligned_cols=35  Identities=29%  Similarity=0.478  Sum_probs=30.2

Q ss_pred             hHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHHh
Q psy2827         168 QQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTDA  203 (373)
Q Consensus       168 ~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~~  203 (373)
                      .-++.||.+|+.||+.+++.|.+. |..+.+||..-
T Consensus        82 ~~ie~Rr~~Le~yL~~ll~~p~~~-s~~l~~FL~~~  116 (128)
T 2ett_A           82 RGLEQRRQGLEAYIQGILYLNQEV-PKELLEFLRLR  116 (128)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHSSSS-CHHHHHHHTCT
T ss_pred             HHHHHHHHHHHHHHHHHHhCchhc-CHHHHHhcCCc
Confidence            346999999999999999999877 78999998754

>2ar5_A Phosphoinositide 3-kinase; PX domain, transferase; 1.80A {Homo sapiens} PDB: 2rea_A 2red_A

Probab=84.79  E-value=0.54  Score=37.76  Aligned_cols=33  Identities=24%  Similarity=0.414  Sum_probs=29.5

Q ss_pred             HHHHhhcHHHHHHHHhch-hhhhhhHHHHHHHHH
Q psy2827         170 LDSRRRGLEIYLEKVCAV-RVIAESELMQEFLTD  202 (373)
Q Consensus       170 ~~~rr~gl~~yl~~v~~~-~~i~~s~~~~~FL~~  202 (373)
                      ++.||.+|+.||+.+.+. +.|++|+.+.+|+.-
T Consensus        81 ~e~Rr~~Le~yL~~ll~~p~~i~~s~~v~~Ff~~  114 (121)
T 2ar5_A           81 AAKRKIELNSYLQSLMNASTDVAECDLVCTFFHG  114 (121)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHTSHHHHHHTSS
T ss_pred             HHHHHHHHHHHHHHHHhCCchhcCCHHHHHHcCC
Confidence            488999999999999885 799999999999864

>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*

Probab=83.91  E-value=0.67  Score=44.59  Aligned_cols=33  Identities=33%  Similarity=0.617  Sum_probs=31.3

Q ss_pred             HHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHH
Q psy2827         170 LDSRRRGLEIYLEKVCAVRVIAESELMQEFLTD  202 (373)
Q Consensus       170 ~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~  202 (373)
                      ++.||.||+.||+.|+++|.+.+|..+..||..
T Consensus        95 ie~Rr~~Le~fL~~i~~~p~l~~~~~~~~FL~~  127 (366)
T 3dyt_A           95 IKMRMERLQAWMTRMCRHPVISESEVFQQFLNF  127 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTCTTGGGSHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhCCHhhhCCcHHHHhhCC
Confidence            489999999999999999999999999999985

>2iwl_X Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide; PI3K, PX domain, transferase; 2.6A {Homo sapiens}

Probab=83.27  E-value=0.65  Score=38.25  Aligned_cols=33  Identities=24%  Similarity=0.395  Sum_probs=30.3

Q ss_pred             HHHhhcHHHHHHHHhc-hhhhhhhHHHHHHHHHh
Q psy2827         171 DSRRRGLEIYLEKVCA-VRVIAESELMQEFLTDA  203 (373)
Q Consensus       171 ~~rr~gl~~yl~~v~~-~~~i~~s~~~~~FL~~~  203 (373)
                      +.||.+|+.||+.+.+ .+.|.+|+.+.+||...
T Consensus        97 e~Rr~~Le~yL~~Ll~~~~~i~~s~~v~~Fl~~~  130 (140)
T 2iwl_X           97 AKRKIELNSYLQSLMNASTDVAECDLVCTFFHPL  130 (140)
T ss_dssp             CHHHHHHHHHHHHHTTSCHHHHTSHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHhCCHhhhcCHHHHHHhCCC
Confidence            8899999999999998 68999999999999764

>3hpc_X SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosphatidylinositol, PI(4,5)P2, cell adhesion, protein transport; 1.47A {Rattus norvegicus} PDB: 3hpb_A

Probab=81.05  E-value=0.95  Score=38.42  Aligned_cols=30  Identities=17%  Similarity=0.354  Sum_probs=27.6

Q ss_pred             hhcHHHHHHHHhchhhhhhhHHHHHHHHHh
Q psy2827         174 RRGLEIYLEKVCAVRVIAESELMQEFLTDA  203 (373)
Q Consensus       174 r~gl~~yl~~v~~~~~i~~s~~~~~FL~~~  203 (373)
                      +.+|+.||+.|++.|++.++..+..||..-
T Consensus       121 r~~Le~FL~ri~~HP~L~~d~~~~~FL~~~  150 (161)
T 3hpc_X          121 VSSHEVFLQRLSSHPVLSKDRNFHVFLEYD  150 (161)
T ss_dssp             HHHHHHHHHHHHHSTTGGGCHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHcCCCcccCcHHHhhcCCC
Confidence            457999999999999999999999999875

>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}

Probab=80.75  E-value=0.86  Score=44.21  Aligned_cols=33  Identities=24%  Similarity=0.512  Sum_probs=31.0

Q ss_pred             HHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHH
Q psy2827         170 LDSRRRGLEIYLEKVCAVRVIAESELMQEFLTD  202 (373)
Q Consensus       170 ~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~  202 (373)
                      ++.||.||+.||+.|+++|.+.+|+.+..||..
T Consensus       115 ie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~  147 (386)
T 4akv_A          115 IEKRKRRLILWMDHMTSHPVLSQYEGFQHFLSC  147 (386)
T ss_dssp             TTHHHHHHHHHHHHHHTCTTGGGCHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHhCCHhhhCCcHHHHHhCC
Confidence            488999999999999999999999999999975

>2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex, transport protein, phosphatidylinositol 3-phosphate binding, nucleotide-binding; 2.20A {Homo sapiens}

Probab=80.16  E-value=0.94  Score=37.04  Aligned_cols=29  Identities=34%  Similarity=0.442  Sum_probs=22.7

Q ss_pred             chhHHHHHhhcHHHHHHHHhchhh-hhhhH
Q psy2827         166 TEQQLDSRRRGLEIYLEKVCAVRV-IAESE  194 (373)
Q Consensus       166 ~i~q~~~rr~gl~~yl~~v~~~~~-i~~s~  194 (373)
                      ...-++.||.+|+.||+.+++.+. +.+|.
T Consensus        75 ~~~~ie~Rr~~Le~yL~~ll~~~~~l~~sp  104 (134)
T 2v14_A           75 DERVIAERRSHLEKYLRDFFSVMLQSATSP  104 (134)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHCTTST
T ss_pred             CHHHHHHHHHHHHHHHHHHHhChHhhcCCH
Confidence            344459999999999999988876 55554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	373
d1q3oa_	104	b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norv	2e-26
d1g9oa_	91	b.36.1.1 (A:) Na+/H+ exchanger regulatory factor,	1e-25
d2fcfa1	96	b.36.1.1 (A:1148-1243) Multiple PDZ domain protein	1e-20
d2fnea1	88	b.36.1.1 (A:1955-2042) Multiple PDZ domain protein	1e-20
d1whaa_	105	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	8e-20
d1x5qa1	97	b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Hom	3e-19
d1vaea_	111	b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [T	4e-19
d1um1a_	110	b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human	4e-19
d2csja1	104	b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tj	6e-19
d1ozia_	99	b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus muscu	7e-19
d2f5ya1	77	b.36.1.1 (A:19-95) Regulator of G-protein signalin	1e-18
d1wf8a1	94	b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens	2e-18
d1tp5a1	102	b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat	2e-18
d2fe5a1	92	b.36.1.1 (A:223-314) Synapse-associated protein 10	3e-18
d1n7ea_	95	b.36.1.1 (A:) Glutamate receptor-interacting prote	6e-18
d1ueqa_	123	b.36.1.1 (A:) Membrane associated guanylate kinase	6e-18
d1m5za_	91	b.36.1.1 (A:) Glutamate receptor interacting prote	7e-18
d1uita_	117	b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Huma	1e-17
d1rzxa_	98	b.36.1.1 (A:) GTPase-binding domain of the cell po	2e-17
d1ueza_	101	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	2e-17
d1rgwa_	85	b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo	2e-17
d2h3la1	103	b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens)	3e-17
d1y7na1	79	b.36.1.1 (A:12-90) Amyloid beta A4 precursor prote	4e-17
d1rgra_	93	b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus	5e-17
d1uepa_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	5e-17
d1uf1a_	128	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	6e-17
d1v62a_	117	b.36.1.1 (A:) Glutamate receptor interacting prote	6e-17
d1x5ra1	99	b.36.1.1 (A:8-106) Glutamate receptor interacting	7e-17
d1wfva_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	1e-16
d1ujda_	117	b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human	1e-16
d1ufxa_	103	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	1e-16
d1wi2a_	104	b.36.1.1 (A:) PDZ domain containing protein 11, Pd	1e-16
d1qava_	90	b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [Ta	3e-16
d1ihja_	94	b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanoga	6e-16
d1x5na1	101	b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens)	6e-16
d1uhpa_	107	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	8e-16
d1uewa_	114	b.36.1.1 (A:) Membrane associated guanylate kinase	8e-16
d1ujua_	111	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	9e-16
d1x6da1	107	b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sap	1e-15
d1v6ba_	118	b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxI	2e-15
d1vb7a_	94	b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus	2e-15
d1w9ea1	85	b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapie	2e-15
d2cs5a1	106	b.36.1.1 (A:8-113) Tyrosine-protein phosphatase no	5e-15
d1v5qa_	122	b.36.1.1 (A:) Glutamate receptor interacting prote	6e-15
d1t2ma1	92	b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [Ta	1e-14
d1kwaa_	88	b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [Ta	1e-14
d1p1da2	99	b.36.1.1 (A:115-213) Glutamate receptor interactin	1e-14
d1wf7a_	103	b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus muscu	3e-14
d2cssa1	108	b.36.1.1 (A:8-115) Regulating synaptic membrane ex	4e-14
d1v5la_	103	b.36.1.1 (A:) Alpha-actinin-2 associated LIM prote	9e-14
d1i16a_	130	b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens)	2e-13
d1r6ja_	82	b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [Ta	3e-13
d1ujva_	96	b.36.1.1 (A:) Membrane associated guanylate kinase	3e-13
d1x45a1	85	b.36.1.1 (A:8-92) Amyloid beta A4 precursor protei	3e-13
d1wi4a1	96	b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mou	6e-13
d1va8a1	100	b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {M	7e-13
d1wifa_	126	b.36.1.1 (A:) hypothetical PDZ domain containing p	2e-12
d1wg6a_	127	b.36.1.1 (A:) Partitioning-defective 3-like protei	3e-12
d2f0aa1	92	b.36.1.1 (A:251-342) Segment polarity protein dish	1e-11
d1qaua_	112	b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS	4e-11
d1wh1a_	124	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	7e-10
d2z9ia1	88	b.36.1.4 (A:227-314) Protease PepD {Mycobacterium	2e-08
d1ky9b2	88	b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-t	1e-07
d1fc6a3	92	b.36.1.3 (A:157-248) Photosystem II D1 C-terminal	6e-07
d1xtea_	116	d.189.1.1 (A:) Serine/threonine-protein kinase Sgk	2e-06
d2i6va1	87	b.36.1.5 (A:219-305) General secretion pathway pro	2e-05
d1lcya1	100	b.36.1.4 (A:226-325) Mitochondrial serine protease	2e-05
d1wgra_	100	d.15.1.5 (A:) Growth factor receptor-bound protein	2e-04
d1k32a1	91	b.36.1.3 (A:763-853) Tricorn protease {Archaeon Th	0.003

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 99.3 bits (247), Expect = 2e-26
 Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 1/98 (1%)

Query: 9   PREVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGD 67
            + V + K D+ GFGF +RG  ++           +  LQ++ +V  GG A +AG+R GD
Sbjct: 6   EKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGD 65

Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSP 105
            ++ VN  NV    H+QVV +I+ GG+ L + V+ V+ 
Sbjct: 66  FLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR 103

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.4 bits (240), Expect = 1e-25
 Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 15/103 (14%)

Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
           PR   + K   G+GF++ G+  + GQ              +  V  G  AEKAG+  GDR
Sbjct: 4   PRLCCLEKGPNGYGFHLHGEKGKLGQY-------------IRLVEPGSPAEKAGLLAGDR 50

Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERL 111
           ++ VN  NVE  TH+QVV  I++  + + L V  V PE  E+L
Sbjct: 51  LVEVNGENVEKETHQQVVSRIRAALNAVRLLV--VDPETDEQL 91

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.8 bits (207), Expect = 1e-20
 Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 5/97 (5%)

Query: 9   PREVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKG 66
           PR V++ +  +   G ++ G    G +L   NGE+   +  +  VL    A K G ++ G
Sbjct: 2   PRRVELWREPSKSLGISIVGGRGMGSRLS--NGEVMRGI-FIKHVLEDSPAGKNGTLKPG 58

Query: 67  DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISV 103
           DRI+ V+ +++  A+H+Q VE I+  G+ +   V S+
Sbjct: 59  DRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSI 95

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.4 bits (206), Expect = 1e-20
 Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 10/95 (10%)

Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
            + + + +   G GF++ G          I         +V  V A GAA + G +++GD
Sbjct: 3   CKSITLERGPDGLGFSIVGGYGSPHGDLPI---------YVKTVFAKGAASEDGRLKRGD 53

Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVIS 102
           +I+AVN  ++EG TH++ V ++K     ++L V+S
Sbjct: 54  QIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLS 88

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.5 bits (201), Expect = 8e-20
 Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 15/118 (12%)

Query: 3   STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG 62
           S+  +G     +A+S+ G GF++ G            G        VS +  GGAA +AG
Sbjct: 2   SSGSSGRHVACLARSERGLGFSIAGGKGSTPYRAGDAG------IFVSRIAEGGAAHRAG 55

Query: 63  IRK-GDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSG 119
             + GDR+L++N V+V  A H   V L+ +    ++L +        ER       SG
Sbjct: 56  TLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLL--------EREAGSGPSSG 105

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.0 bits (197), Expect = 3e-19
 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 6/92 (6%)

Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
              + I +   G G ++ G            G        +S V   G A +AG+R GD+
Sbjct: 9   ELTLTILRQTGGLGISIAGGKGSTPYKGDDEG------IFISRVSEEGPAARAGVRVGDK 62

Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           +L VN V ++GA H + VE ++  G  + + V
Sbjct: 63  LLEVNGVALQGAEHHEAVEALRGAGTAVQMRV 94

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.1 bits (197), Expect = 4e-19
 Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 17/118 (14%)

Query: 3   STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG 62
           S + + PR +     +   GF +RG           N  +      V  +    +A  AG
Sbjct: 10  SKRWSPPRGIHFTVEEGDLGFTLRG-----------NTPVQ-----VHFLDPHCSASLAG 53

Query: 63  IRKGDRILAVNNVNVEGATHKQVVELIK-SGGDVLSLTVISVSPEEAERLEPPDDHSG 119
            ++GD I+++  V+ +  T  +V++L+K  GG+ + + V+S+    +         SG
Sbjct: 54  AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVSLLDSTSSMHNKSGPSSG 111

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.6 bits (196), Expect = 4e-19
 Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 11/111 (9%)

Query: 10  REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDR 68
             V++ +  +G G  +            ++  L AP  ++  +L G  A   G +  GDR
Sbjct: 10  FTVELERGPSGLGMGLIDG---------MHTHLGAPGLYIQTLLPGSPAAADGRLSLGDR 60

Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSG 119
           IL VN  ++ G  + + V+LI+ GG  +   V     E A+++      SG
Sbjct: 61  ILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDVETAKKIH-SGPSSG 110

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.2 bits (195), Expect = 6e-19
 Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 8/93 (8%)

Query: 9   PREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGD 67
              V + K    GFG  V G                     +S VL GG A+   +++ D
Sbjct: 8   QYTVTLQKDSKRGFGIAVSGGRDNPHFENGETS------IVISDVLPGGPAD-GLLQEND 60

Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           R++ VN   +E   H   V+ ++  G + ++ V
Sbjct: 61  RVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVV 93

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.8 bits (194), Expect = 7e-19
 Identities = 41/94 (43%), Positives = 59/94 (62%), Gaps = 7/94 (7%)

Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSI-NGELYAPLQHVSAVLAGGAAEKAG-IRKG 66
             EV++AK+D   G +V     +GG   S+ +G +Y     V A++  GAAE  G I KG
Sbjct: 5   TFEVELAKTDGSLGISVTVLFDKGGVNTSVRHGGIY-----VKAIIPKGAAESDGRIHKG 59

Query: 67  DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           DR+LAVN V++EGATHKQ VE +++ G V+ L +
Sbjct: 60  DRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLL 93

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.6 bits (191), Expect = 1e-18
 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 16/89 (17%)

Query: 12  VQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILA 71
           + I +   GFGF +                       V AV +GG AE+AG+++ D +L 
Sbjct: 1   ITIPRGKDGFGFTICCDSP----------------VRVQAVDSGGPAERAGLQQLDTVLQ 44

Query: 72  VNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           +N   VE     ++   I+S    + L V
Sbjct: 45  LNERPVEHWKCVELAHEIRSCPSEIILLV 73

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.6 bits (191), Expect = 2e-18
 Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 7/91 (7%)

Query: 11  EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
            V++ K + G G ++ G            G        V  V  GGAA++ G I+  D+I
Sbjct: 5   PVELEKDEDGLGISIIGMGVGADAGLEKLG------IFVKTVTEGGAAQRDGRIQVNDQI 58

Query: 70  LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           + V+ +++ G T      ++++    +   +
Sbjct: 59  VEVDGISLVGVTQNFAATVLRNTKGNVRFVI 89

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 102

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 77.6 bits (191), Expect = 2e-18
 Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 15/106 (14%)

Query: 8   GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKG 66
            PR + I +  TG GFN+ G     G               +S +LAGG A+ +G +RKG
Sbjct: 9   EPRRIVIHRGSTGLGFNIVGGEDGEGIF-------------ISFILAGGPADLSGELRKG 55

Query: 67  DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLE 112
           D+IL+VN V++  A+H+Q    +K+ G  +++      PEE  R E
Sbjct: 56  DQILSVNGVDLRNASHEQAAIALKNAGQTVTIIA-QYKPEEYSRFE 100

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.9 bits (189), Expect = 3e-18
 Identities = 31/91 (34%), Positives = 53/91 (58%), Gaps = 8/91 (8%)

Query: 11  EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRI 69
           EV + K   G GF++ G +  G Q    +  +Y     ++ ++ GGAA+K G ++ GDR+
Sbjct: 4   EVNLLKGPKGLGFSIAGGI--GNQHIPGDNSIY-----ITKIIEGGAAQKDGRLQIGDRL 56

Query: 70  LAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           LAVNN N++   H++ V  +K+  D++ L V
Sbjct: 57  LAVNNTNLQDVRHEEAVASLKNTSDMVYLKV 87

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 95

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 76.1 bits (187), Expect = 6e-18
 Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 13/92 (14%)

Query: 10  REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDR 68
             V++ +     G  + G       +             +S++  GG AE+ G I  GDR
Sbjct: 5   YTVELKRYGGPLGITISGTEEPFDPII------------ISSLTKGGLAERTGAIHIGDR 52

Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           ILA+N+ +++G    + + L++  G+ ++L +
Sbjct: 53  ILAINSSSLKGKPLSEAIHLLQMAGETVTLKI 84

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.9 bits (189), Expect = 6e-18
 Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 15/109 (13%)

Query: 10  REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDR 68
               + KS+ GFGF + G       L+            V +V+  G A + G +  GD 
Sbjct: 21  LSTTLKKSNMGFGFTIIGGDEPDEFLQ------------VKSVIPDGPAAQDGKMETGDV 68

Query: 69  ILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSPEEAERLEPPD 115
           I+ +N V V G TH  VV+L +S   G  ++L +    P   +  +P +
Sbjct: 69  IVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYPLPFDPEDPAN 117

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 75.7 bits (186), Expect = 7e-18
 Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 15/94 (15%)

Query: 9   PREVQIAKSD--TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKG 66
             +V + K      FGF+V   + E G               V  +   G  +  G++  
Sbjct: 7   LHKVTLYKDSGMEDFGFSVADGLLEKGVY-------------VKNIRPAGPGDLGGLKPY 53

Query: 67  DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           DR+L VN+V         VV LI   G+ L L +
Sbjct: 54  DRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVI 87

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.2 bits (187), Expect = 1e-17
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 14/92 (15%)

Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
           PR V++ K     G ++      G               +VS V  G  A +AG+  GD+
Sbjct: 20  PRHVKVQKGSEPLGISIVSGEKGG--------------IYVSKVTVGSIAHQAGLEYGDQ 65

Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           +L  N +N+  AT +Q   +I    D +++  
Sbjct: 66  LLEFNGINLRSATEQQARLIIGQQCDTITILA 97

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 98

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 75.0 bits (184), Expect = 2e-17
 Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 6/99 (6%)

Query: 9   PREVQIAK--SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRK 65
            R V++ K  SD   GF +R   S      + +G    P   +S ++ GG AE  G +  
Sbjct: 3   HRRVRLLKHGSDKPLGFYIRDGTSVR---VTASGLEKQPGIFISRLVPGGLAESTGLLAV 59

Query: 66  GDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVS 104
            D ++ VN + V G T  QV +++ +    L +TV   +
Sbjct: 60  NDEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITVKPAN 98

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.9 bits (184), Expect = 2e-17
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 13/96 (13%)

Query: 11  EVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRIL 70
            ++ AK+  G GF++RG            G  +    +VS V  G  AEK G+R GD+IL
Sbjct: 13  SLRRAKAHEGLGFSIRG------------GSEHGVGIYVSLVEPGSLAEKEGLRVGDQIL 60

Query: 71  AVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPE 106
            VN+ ++   TH + V+ +K    +  L+V S    
Sbjct: 61  RVNDKSLARVTHAEAVKALKGSKKL-VLSVYSAGRI 95

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.1 bits (182), Expect = 2e-17
 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 13/92 (14%)

Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDR 68
              V +      +GF ++G            G+ +     +S +  G  A ++ + +GD 
Sbjct: 2   AYSVTLTGP-GPWGFRLQG------------GKDFNMPLTISRITPGSKAAQSQLSQGDL 48

Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           ++A++ VN +  TH +    IKS    LSLT+
Sbjct: 49  VVAIDGVNTDTMTHLEAQNKIKSASYNLSLTL 80

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.1 bits (182), Expect = 3e-17
 Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 8/98 (8%)

Query: 5   QQTGPREVQIA-KSDTGFGFNVRGQV-SEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG 62
            +   +E+++  + D   GF++ G V   G   R  +  ++     V+ V   G A K  
Sbjct: 6   HELAKQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIF-----VTRVQPEGPASKL- 59

Query: 63  IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           ++ GD+I+  N  +     H Q V L+K+  + + L +
Sbjct: 60  LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELII 97

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.3 bits (180), Expect = 4e-17
 Identities = 19/97 (19%), Positives = 42/97 (43%), Gaps = 21/97 (21%)

Query: 10  REVQIAKSDT--GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGD 67
             V I + D     GF+V+  +                   + +++ GG AE+ G+R G 
Sbjct: 2   TTVLIRRPDLRYQLGFSVQNGI-------------------ICSLMRGGIAERGGVRVGH 42

Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVS 104
           RI+ +N  +V    H+++V ++ +    + +  +  +
Sbjct: 43  RIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPAA 79

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 73.4 bits (180), Expect = 5e-17
 Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 16/107 (14%)

Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
             E+ + + ++G GF++ G           +  ++     ++ ++ GGAA + G +R  D
Sbjct: 2   YEEITLERGNSGLGFSIAGGT--DNPHIGDDPSIF-----ITKIIPGGAAAQDGRLRVND 54

Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPP 114
            IL VN V+V   TH   VE +K  G ++ L V         R +PP
Sbjct: 55  SILFVNEVDVREVTHSAAVEALKEAGSIVRLYV--------MRRKPP 93

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.8 bits (181), Expect = 5e-17
 Identities = 24/102 (23%), Positives = 50/102 (49%), Gaps = 15/102 (14%)

Query: 3   STQQTGPREVQI--AKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEK 60
           S+  +G +E+ +   + ++GFGF + G    G  +             + AV+A G+A++
Sbjct: 2   SSGSSGYKELDVHLRRMESGFGFRILGGDEPGQPIL------------IGAVIAMGSADR 49

Query: 61  AG-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
            G +  GD ++ V+ + V G TH+ V++L+        + + 
Sbjct: 50  DGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLT 91

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.3 bits (182), Expect = 6e-17
 Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 14/116 (12%)

Query: 1   MYSTQQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAE 59
           ++  Q    ++V +   D    G  +RG            G  Y    +++ V  G  AE
Sbjct: 13  LHLLQGGDEKKVNLVLGDGRSLGLTIRG------------GAEYGLGIYITGVDPGSEAE 60

Query: 60  KAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPD 115
            +G++ GD+IL VN  +     H + V L+KS   +  LTV  V      R    +
Sbjct: 61  GSGLKVGDQILEVNGRSFLNILHDEAVRLLKSSRHL-ILTVKDVGRLPHARTTVDE 115

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.9 bits (181), Expect = 6e-17
 Identities = 18/118 (15%), Positives = 45/118 (38%), Gaps = 13/118 (11%)

Query: 4   TQQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG 62
              +GP  V+I K+  +  G ++                    +  +  +      +++G
Sbjct: 11  ANASGPLMVEIVKTPGSALGISLTTTSLRNK-----------SVITIDRIKPASVVDRSG 59

Query: 63  -IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSG 119
            +  GD IL+++  ++E  +  +  +L+ S  + + L ++ V   +          SG
Sbjct: 60  ALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEILPVPQSQRPLRPSSGPSSG 117

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.0 bits (179), Expect = 7e-17
 Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 10/96 (10%)

Query: 7   TGPREVQIAK-SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IR 64
           T   EV +     +GFG  ++G +     L S       P   V  +     AE+ G ++
Sbjct: 7   TETTEVVLCGDPLSGFGLQLQGGIFATETLSS-------PPL-VCFIEPDSPAERCGLLQ 58

Query: 65  KGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
            GDR+L++N +  E  T ++  +L++       + +
Sbjct: 59  VGDRVLSINGIATEDGTMEEANQLLRDAALAHKVVL 94

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.6 bits (178), Expect = 1e-16
 Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 13/99 (13%)

Query: 3   STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG 62
           S Q      V + K   GFGF++RG            G  Y    +V  +   G A + G
Sbjct: 6   SGQDFDYFTVDMEKGAKGFGFSIRG------------GREYKMDLYVLRLAEDGPAIRNG 53

Query: 63  -IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
            +R GD+I+ +N  +    TH + +ELIKSGG  + L +
Sbjct: 54  RMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLL 92

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.1 bits (179), Expect = 1e-16
 Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 8/82 (9%)

Query: 20  GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVE 78
           G G  + G    G ++   +GE+ A   +++ +L GG+AE+ G + +G ++L  N + + 
Sbjct: 31  GLGIRIVG----GKEIPGHSGEIGA---YIAKILPGGSAEQTGKLMEGMQVLEWNGIPLT 83

Query: 79  GATHKQVVELIKSGGDVLSLTV 100
             T+++V  +I        + V
Sbjct: 84  SKTYEEVQSIISQQSGEAEICV 105

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.7 bits (178), Expect = 1e-16
 Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 12/95 (12%)

Query: 8   GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKG 66
               V++ KS    G  + G  +              PL  +  +  GG+A   G ++ G
Sbjct: 6   SGTLVRVKKSAATLGIAIEGGANTRQ-----------PLPRIVTIQRGGSAHNCGQLKVG 54

Query: 67  DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
             IL VN + + G  H++   +I           I
Sbjct: 55  HVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYI 89

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.3 bits (177), Expect = 1e-16
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 14/96 (14%)

Query: 6   QTGPREVQIAK-SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIR 64
           Q  PR V + K      GFN+RG            G+       +S V+    A +AG++
Sbjct: 13  QFLPRIVTLKKPPGAQLGFNIRG------------GKASQLGIFISKVIPDSDAHRAGLQ 60

Query: 65  KGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           +GD++LAVN+V+ +   H + VE++K+  ++ S+ V
Sbjct: 61  EGDQVLAVNDVDFQDIEHSKAVEILKTAREI-SMRV 95

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.0 bits (174), Expect = 3e-16
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 14/94 (14%)

Query: 9   PREVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKG 66
            R V + K+D  G G +++G       +             +S +  G AA++   +  G
Sbjct: 5   RRRVTVRKADAGGLGISIKGGRENKMPIL------------ISKIFKGLAADQTEALFVG 52

Query: 67  DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           D IL+VN  ++  ATH + V+ +K  G  + L V
Sbjct: 53  DAILSVNGEDLSSATHDEAVQALKKTGKEVVLEV 86

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 70.7 bits (173), Expect = 6e-16
 Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 8/93 (8%)

Query: 10  REVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
             V + K+    FG  +     +        G        +  ++    A   G ++ GD
Sbjct: 5   HMVTLDKTGKKSFGICIVRGEVKDSPNTKTTG------IFIKGIVPDSPAHLCGRLKVGD 58

Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           RIL++N  +V  +T + V++LIK     + L +
Sbjct: 59  RILSLNGKDVRNSTEQAVIDLIKEADFKIELEI 91

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.7 bits (173), Expect = 6e-16
 Identities = 22/106 (20%), Positives = 48/106 (45%), Gaps = 14/106 (13%)

Query: 3   STQQTGPREVQIAKS-DTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA 61
             ++   ++V I+     G G ++              G +  P   +S V  G  + + 
Sbjct: 3   GNRENKEKKVFISLVGSRGLGCSISS------------GPIQKPGIFISHVKPGSLSAEV 50

Query: 62  GIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEE 107
           G+  GD+I+ VN V+     HK+ V ++KS   + ++++++ +  E
Sbjct: 51  GLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSL-TISIVAAAGRE 95

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.4 bits (172), Expect = 8e-16
 Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 5/94 (5%)

Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
              + + +     GFN+ G    G      +    +    VS ++  G A K G ++  D
Sbjct: 9   SLTLVLHRDSGSLGFNIIG----GRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHD 64

Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
           RI+ VN  ++  ATH Q VE  K+  + + + V+
Sbjct: 65  RIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVL 98

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.8 bits (173), Expect = 8e-16
 Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 9/114 (7%)

Query: 3   STQQTGPREVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA 61
           S+      +V I + +  GFGF +          R  +G        +  ++ G  A++ 
Sbjct: 5   SSGSLQTSDVVIHRKENEGFGFVIIS-----SLNRPESGSTITVPHKIGRIIDGSPADRC 59

Query: 62  G-IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPP 114
             ++ GDRILAVN  ++    H  +V+LIK  G  ++L +  +  EE      P
Sbjct: 60  AKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRI--IPQEELNSPSGP 111

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.4 bits (172), Expect = 9e-16
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 8   GPREVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRK 65
           G RE+ I K+     G ++RG             +       +S V   GAA + G +R 
Sbjct: 9   GLRELCIQKAPGERLGISIRGGARGHAGNPRDPTD---EGIFISKVSPTGAAGRDGRLRV 65

Query: 66  GDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
           G R+L VN  ++ G TH + V+L++S GD L++ V
Sbjct: 66  GLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLV 100

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.0 bits (171), Expect = 1e-15
 Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 15/113 (13%)

Query: 5   QQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG- 62
           Q  G     + K +  G GF++ G           N  +      V  V   G A + G 
Sbjct: 5   QLDGIHVTILHKEEGAGLGFSLAGGADLE------NKVIT-----VHRVFPNGLASQEGT 53

Query: 63  IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVIS--VSPEEAERLEP 113
           I+KG+ +L++N  +++G TH   + +++   +     +++  ++PE    L  
Sbjct: 54  IQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKLTPEAMPDLNS 106

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]} Length = 118

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.7 bits (170), Expect = 2e-15
 Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 18/116 (15%)

Query: 1   MYSTQQTGPREVQI--AKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAA 58
           M+S +Q   ++V++   K +      + G V       S  G++      VSAV  GGAA
Sbjct: 8   MFSPEQIAGKDVRLLRIKKEGSLDLALEGGVD------SPVGKVV-----VSAVYEGGAA 56

Query: 59  EKAG-IRKGDRILAVNNVNVEGATHKQVVELIK----SGGDVLSLTVISVSPEEAE 109
           E+ G + KGD I+A+N   V   T  +    ++     GGD + L V    P+E +
Sbjct: 57  ERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPPKEYD 112

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.8 bits (168), Expect = 2e-15
 Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 12/85 (14%)

Query: 16  KSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNV 75
                +GF + G            G  +     V+ V   G AE A +R GD I+A+N  
Sbjct: 13  AGPAPWGFRISG------------GRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQ 60

Query: 76  NVEGATHKQVVELIKSGGDVLSLTV 100
           + E   H +    I+     L L +
Sbjct: 61  SAENMLHAEAQSKIRQSASPLRLQL 85

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (167), Expect = 2e-15
 Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 17/94 (18%)

Query: 9   PREVQIAK-SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGD 67
           PREV + K  D   G  ++           I+  ++     V  V A   A   G+R GD
Sbjct: 3   PREVILCKDQDGKIGLRLKS----------IDNGIF-----VQLVQANSPASLVGLRFGD 47

Query: 68  RILAVNNVNVEGATHKQVVELIK-SGGDVLSLTV 100
           ++L +N  N  G +  +  +++K + G+ +++T+
Sbjct: 48  QVLQINGENCAGWSSDKAHKVLKQAFGEKITMTI 81

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.0 bits (166), Expect = 5e-15
 Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 16/113 (14%)

Query: 3   STQQTGPREVQIAKSDTG-FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA 61
                    +++   + G FGFNV+G   +   +             VS V  G  A+  
Sbjct: 3   GIPHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVI------------VSRVAPGTPADLC 50

Query: 62  --GIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV-ISVSPEEAERL 111
              + +GD+++ +N  ++   TH QVV  IK+  +  S  + + V P     +
Sbjct: 51  VPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNAVYDV 103

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.5 bits (167), Expect = 6e-15
 Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 10/96 (10%)

Query: 7   TGPREVQIAK-SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IR 64
           T   EV +     TGFG  ++G V            L +P   +S + A   AE+ G ++
Sbjct: 14  TETTEVVLTADPVTGFGIQLQGSVFA-------TETLSSPPL-ISYIEADSPAERCGVLQ 65

Query: 65  KGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
            GDR++A+N +  E +T ++  +L++       +T+
Sbjct: 66  IGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTL 101

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (163), Expect = 1e-14
 Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 11/97 (11%)

Query: 5   QQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-I 63
           ++     V + K + G G ++      G     I         +V +V+ GGAA+  G +
Sbjct: 1   KEPEIITVTLKKQN-GMGLSIVAAKGAGQDKLGI---------YVKSVVKGGAADVDGRL 50

Query: 64  RKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
             GD++L+V+  ++ G + ++  EL+     V++L V
Sbjct: 51  AAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEV 87

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (163), Expect = 1e-14
 Identities = 17/95 (17%), Positives = 38/95 (40%), Gaps = 16/95 (16%)

Query: 9   PREVQIAKS-DTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKG 66
            R VQ  K+ D   G  ++                      V+ ++ GG   + G +  G
Sbjct: 2   SRLVQFQKNTDEPMGITLKMNELNH--------------CIVARIMHGGMIHRQGTLHVG 47

Query: 67  DRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
           D I  +N ++V   T +Q+ ++++     ++  ++
Sbjct: 48  DEIREINGISVANQTVEQLQKMLREMRGSITFKIV 82

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 66.8 bits (163), Expect = 1e-14
 Identities = 18/97 (18%), Positives = 44/97 (45%), Gaps = 12/97 (12%)

Query: 6   QTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-I 63
            +G   V++ K      G  +             + +   PL  +S +  G  A + G +
Sbjct: 8   SSGTFHVKLPKKHSVELGITISS---------PSSRKPGDPL-VISDIKKGSVAHRTGTL 57

Query: 64  RKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
             GD++LA++N+ ++  + +  V++++   D++ L +
Sbjct: 58  ELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKI 94

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.2 bits (161), Expect = 3e-14
 Identities = 20/81 (24%), Positives = 42/81 (51%), Gaps = 12/81 (14%)

Query: 20  GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEG 79
            +GF ++G            G+ +     +S++  GG A +A +R GD +L+++ ++ +G
Sbjct: 16  PWGFRLQG------------GKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQG 63

Query: 80  ATHKQVVELIKSGGDVLSLTV 100
            TH +    IK+    L++T+
Sbjct: 64  MTHLEAQNKIKACTGSLNMTL 84

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.7 bits (160), Expect = 4e-14
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 12/95 (12%)

Query: 9   PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
            R      S    G  V G                     ++ V  G  A+  G +R GD
Sbjct: 20  KRTTMPKDSGALLGLKVVGGKMTDLGRLGA---------FITKVKKGSLADVVGHLRAGD 70

Query: 68  RILAVNNVNVEGATHKQVVELIKS--GGDVLSLTV 100
            +L  N   + GAT+++V  +I        + + V
Sbjct: 71  EVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIV 105

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.7 bits (157), Expect = 9e-14
 Identities = 21/106 (19%), Positives = 34/106 (32%), Gaps = 12/106 (11%)

Query: 14  IAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVN 73
           +      +GF + G +     L             ++ +  G  A  A +  GD ILA++
Sbjct: 10  VLPGPAPWGFRLSGGIDFNQPL------------VITRITPGSKAAAANLCPGDVILAID 57

Query: 74  NVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDDHSG 119
               E  TH    + IK+    L L +                 SG
Sbjct: 58  GFGTESMTHADAQDRIKAASYQLCLKIDRAETRLWSPQVSSGPSSG 103

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.7 bits (157), Expect = 2e-13
 Identities = 23/115 (20%), Positives = 46/115 (40%), Gaps = 10/115 (8%)

Query: 3   STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG 62
           ST +     V + K   G GF++ G        + +          ++ +  G A+E++ 
Sbjct: 24  STAEATVCTVTLEKMSAGLGFSLEGGKGSLHGDKPL---------TINRIFKGAASEQSE 74

Query: 63  -IRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEEAERLEPPDD 116
            ++ GD IL +    ++G T  +   +IK+  D     VI     +++      D
Sbjct: 75  TVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQSKETTAAGD 129

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (151), Expect = 3e-13
 Identities = 18/94 (19%), Positives = 40/94 (42%), Gaps = 20/94 (21%)

Query: 9   PREVQIAKSDTG-FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGD 67
           PR + + K  TG  GF  +                      +++++   +A + G+    
Sbjct: 5   PRTITMHKDSTGHVGFIFKNG-------------------KITSIVKDSSAARNGLLTEH 45

Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
            I  +N  NV G    Q+ +++ + G V+++T++
Sbjct: 46  NICEINGQNVIGLKDSQIADILSTSGTVVTITIM 79

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.1 bits (153), Expect = 3e-13
 Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 19/100 (19%)

Query: 3   STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG 62
           S+ Q     + I K   GFGF +                     Q V            G
Sbjct: 5   SSGQAELMTLTIVKGAQGFGFTIADS---------------PTGQRV--KQILDIQGCPG 47

Query: 63  IRKGDRILAVNNVNVEGATHKQVVELIKSG--GDVLSLTV 100
           + +GD I+ +N  NV+  +H +VV+++K    G   SL +
Sbjct: 48  LCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLII 87

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.6 bits (152), Expect = 3e-13
 Identities = 20/95 (21%), Positives = 40/95 (42%), Gaps = 14/95 (14%)

Query: 11  EVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDR 68
           +V I K      G  +           S  G +   +  ++ ++ GG AEK+G +  GD+
Sbjct: 1   DVFIEKQKGEILGVVIVE---------SGWGSILPTV-IIANMMHGGPAEKSGKLNIGDQ 50

Query: 69  ILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVI 101
           I+++N  ++ G        +IK       + L ++
Sbjct: 51  IMSINGTSLVGLPLSTCQSIIKGLKNQSRVKLNIV 85

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.3 bits (151), Expect = 6e-13
 Identities = 19/97 (19%), Positives = 42/97 (43%), Gaps = 16/97 (16%)

Query: 10  REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDR 68
           R + + K +TG G  + G ++              PL ++  V+ GG   K G ++ GD+
Sbjct: 10  RVITVTK-ETGLGLKILGGINRNEG----------PLVYIHEVIPGGDCYKDGRLKPGDQ 58

Query: 69  ILAVNNVNVEGATHKQVVELIKS----GGDVLSLTVI 101
           ++++N  ++ G + ++   +I            +  I
Sbjct: 59  LVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFI 95

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.2 bits (151), Expect = 7e-13
 Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 17/96 (17%)

Query: 8   GPREVQIAKS-DTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRK 65
             + V+I K+ D   G  VR +             +      +S ++ GGAAEK+G + +
Sbjct: 18  TVKIVRIEKARDIPLGATVRNE----------MDSVI-----ISRIVKGGAAEKSGLLHE 62

Query: 66  GDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
           GD +L +N + + G    +V +L+      L+  +I
Sbjct: 63  GDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLI 98

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 126

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.6 bits (149), Expect = 2e-12
 Identities = 24/119 (20%), Positives = 49/119 (41%), Gaps = 18/119 (15%)

Query: 4   TQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG- 62
           +      + ++   + G G  V      G  L+            +S ++  GAA   G 
Sbjct: 23  SSLNKVIQTKLTVGNLGLGLVVIQ---NGPYLQ------------ISHLINKGAAASDGI 67

Query: 63  IRKGDRILAVNNVNVEGATHKQVVELIKSG--GDVLSLTVISVSPEEAERLEPPDDHSG 119
           ++ GD +++V + NV G T ++ ++L+++   G VL +       E  +  +     SG
Sbjct: 68  LQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRGFLEIPQEWQDSGPSSG 126

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.9 bits (147), Expect = 3e-12
 Identities = 19/95 (20%), Positives = 44/95 (46%), Gaps = 10/95 (10%)

Query: 11  EVQIAKS-DTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDR 68
           E+ +  S   G G +++G  S        +  ++     + +++ GGAA K G +R  D+
Sbjct: 28  EIPLNDSGSAGLGVSLKGNKSRE---TGTDLGIF-----IKSIIHGGAAFKDGRLRMNDQ 79

Query: 69  ILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISV 103
           ++AVN   + G ++ + +E ++    +       +
Sbjct: 80  LIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMI 114

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 58.4 bits (141), Expect = 1e-11
 Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 11/93 (11%)

Query: 16  KSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNN 74
           +     G ++ GQ +E G     +G +Y     + +++ GGA    G I  GD +L VN+
Sbjct: 10  EKYNFLGISIVGQSNERG-----DGGIY-----IGSIMKGGAVAADGRIEPGDMLLQVND 59

Query: 75  VNVEGATHKQVVELIKSGGDVLSLTVISVSPEE 107
           +N E  ++   V +++         V++V+  E
Sbjct: 60  INFENMSNDDAVRVLRDIVHKPGPIVLTVAKLE 92

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 112

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.4 bits (138), Expect = 4e-11
 Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 15/100 (15%)

Query: 10  REVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGD 67
             V++ K    G GF V+ +VS+   +             +S ++ GGAAE++G I+ GD
Sbjct: 3   ISVRLFKRKVGGLGFLVKERVSKPPVI-------------ISDLIRGGAAEQSGLIQAGD 49

Query: 68  RILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPEE 107
            ILAVN+  +   ++   +E+++       + +I   PE 
Sbjct: 50  IILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEG 89

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (130), Expect = 7e-10
 Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 16/110 (14%)

Query: 10  REVQIAK--SDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA-GIRKG 66
            EV + +  S    G  V  +  +   +            ++S +     A K   IR+G
Sbjct: 21  EEVDLYRMNSQDKLGLTVCYRTDDEDDIG----------IYISEIDPNSIAAKDGRIREG 70

Query: 67  DRILAVNNVNVEGATHKQVVELIK-SGGDVLSLTVISVSPEEAERLEPPD 115
           DRI+ +N + V+    ++ V L+        SL +     +  E     D
Sbjct: 71  DRIIQINGIEVQN--REEAVALLTSEENKNFSLLIARPELQLDEGWMDDD 118

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 49.1 bits (117), Expect = 2e-08
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 49  VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
           +  V+AGGAA  AG+ KG  +  V++  +  A         K+ G  ++LT  
Sbjct: 20  IVEVVAGGAAANAGVPKGVVVTKVDDRPINSADALVAAVRSKAPGATVALTFQ 72

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 47.2 bits (112), Expect = 1e-07
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 7/79 (8%)

Query: 28  QVSEGGQLRSINGELYAPLQH-----VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATH 82
           QV        I G   +         V+ V  G  A + G++KGD I+  N   V+    
Sbjct: 3   QVDSSSIFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVK--NI 60

Query: 83  KQVVELIKSGGDVLSLTVI 101
            ++ +++ S   VL+L + 
Sbjct: 61  AELRKVLDSKPSVLALNIQ 79

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

 Score = 45.0 bits (106), Expect = 6e-07
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 13/84 (15%)

Query: 19  TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVE 78
           TG G  +      G  +             V     GG AEKAG R GD I+ V+   V+
Sbjct: 5   TGVGLEITYDGGSGKDVV------------VLTPAPGGPAEKAGARAGDVIVTVDGTAVK 52

Query: 79  GATHKQVVELIK-SGGDVLSLTVI 101
           G +   V +L++      + + + 
Sbjct: 53  GMSLYDVSDLLQGEADSQVEVVLH 76

>d1xtea_ d.189.1.1 (A:) Serine/threonine-protein kinase Sgk3, Cisk {Mouse (Mus musculus) [TaxId: 10090]} Length = 116

class: Alpha and beta proteins (a+b)
fold: PX domain
superfamily: PX domain
family: PX domain
domain: Serine/threonine-protein kinase Sgk3, Cisk
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.9 bits (103), Expect = 2e-06
 Identities = 17/108 (15%), Positives = 32/108 (29%), Gaps = 35/108 (32%)

Query: 128 KRSLP-ISIPDYSYVNTEDESFVVFNIYMA---GRHLCSRRLTE---------------- 167
           K S P +SIP       + + F V+ + ++         RR  E                
Sbjct: 1   KESCPSVSIPSSDEHREKKKRFTVYKVLVSVGRSEWFVFRRYAEFDKLYNSLKKQFPAMA 60

Query: 168 ---------------QQLDSRRRGLEIYLEKVCAVRVIAESELMQEFL 200
                            +  RR GL  +++ +     +     ++ FL
Sbjct: 61  LKIPAKRIFGDNFDPDFIKQRRAGLNEFIQNLVRYPELYNHPDVRAFL 108

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]} Length = 87

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

 Score = 40.7 bits (95), Expect = 2e-05
 Identities = 12/53 (22%), Positives = 22/53 (41%)

Query: 49  VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVI 101
           VS        E  G++ GD  +A+N +++        +    +    +SLTV 
Sbjct: 23  VSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVE 75

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (95), Expect = 2e-05
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 11/69 (15%)

Query: 49  VSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV-------- 100
           +  V+ G  A +AG+R GD ILA+    V+    + V E +++    L++ +        
Sbjct: 35  IHKVILGSPAHRAGLRPGDVILAIGEQMVQ--NAEDVYEAVRT-QSQLAVQIRRGRETLT 91

Query: 101 ISVSPEEAE 109
           + V+PE  E
Sbjct: 92  LYVTPEVTE 100

>d1wgra_ d.15.1.5 (A:) Growth factor receptor-bound protein 7, GRB-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: Growth factor receptor-bound protein 7, GRB-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (88), Expect = 2e-04
 Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 5/93 (5%)

Query: 214 PVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFE-IVEYSFERK 272
           P  +K+   D    +V V   ATA  V    V + +  S      + L E     + ER 
Sbjct: 9   PHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDE---TWGLVECHPHLALERG 65

Query: 273 LEAKEFPHHLYIQNYSTASATCLCIRKWLFSAP 305
           LE  E    +    +     +    RK   S P
Sbjct: 66  LEDHESVVEV-QAAWPVGGDSRFVFRKNFASGP 97

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 34.6 bits (79), Expect = 0.003
 Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 2/53 (3%)

Query: 49  VSAVLAGGAAEKAGIRK-GDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTV 100
            S         + GI   G  I  ++   V   ++   V   K+G     + +
Sbjct: 24  YSNEGEKSPIFEYGIDPTGYLIEDIDGETVGAGSNIYRVLSEKAGTSAR-IRL 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	373
d1g9oa_	91	Na+/H+ exchanger regulatory factor, NHERF {Human (	99.66
d1q3oa_	104	Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId	99.64
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1tp5a1	102	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.62
d1m5za_	91	Glutamate receptor interacting protein {Rat (Rattu	99.61
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	99.61
d1rgra_	93	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.61
d2fcfa1	96	Multiple PDZ domain protein {Human (Homo sapiens)	99.6
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	99.59
d2fe5a1	92	Synapse-associated protein 102 {Human (Homo sapien	99.59
d1ozia_	99	Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1	99.59
d1x5qa1	97	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.58
d1uhpa_	107	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.58
d1whaa_	105	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.58
d2fnea1	88	Multiple PDZ domain protein {Human (Homo sapiens)	99.58
d1qava_	90	Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	99.57
d1vaea_	111	Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}	99.55
d1wf8a1	94	Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}	99.55
d1um1a_	110	Hypothetical protein KIAA1849 {Human (Homo sapiens	99.54
d1ihja_	94	Inad {Fruit fly (Drosophila melanogaster) [TaxId:	99.54
d1wi2a_	104	PDZ domain containing protein 11, Pdzk11 {Mouse (M	99.53
d1uita_	117	Discs large 5 protein KIAA0583 {Human (Homo sapien	99.51
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.51
d1n7ea_	95	Glutamate receptor-interacting protein 1, GRIP1 {R	99.5
d1kwaa_	88	Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.49
d1t2ma1	92	Afadin {Human (Homo sapiens) [TaxId: 9606]}	99.49
d1y7na1	79	Amyloid beta A4 precursor protein-binding family A	99.48
d1vb7a_	94	PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta	99.47
d1rzxa_	98	GTPase-binding domain of the cell polarity protein	99.46
d1uewa_	114	Membrane associated guanylate kinase inverted-2 (M	99.45
d1wfva_	103	Membrane associated guanylate kinase inverted-2 (M	99.44
d1uf1a_	128	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.44
d1ujua_	111	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.44
d1uepa_	103	Membrane associated guanylate kinase inverted-2 (M	99.43
d2csja1	104	Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc	99.43
d1v62a_	117	Glutamate receptor interacting protein 2, GRIP2 (K	99.43
d1x5na1	101	Harmonin {Human (Homo sapiens) [TaxId: 9606]}	99.43
d1wi4a1	96	Syntaxin binding protein 4 {Mouse (Mus musculus) [	99.43
d2f0aa1	92	Segment polarity protein dishevelled homolog Dvl-2	99.42
d1p1da2	99	Glutamate receptor interacting protein {Rat (Rattu	99.42
d2h3la1	103	Erbin {Human (Homo sapiens) [TaxId: 9606]}	99.41
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	99.41
d1qaua_	112	Neuronal nitric oxide synthase, NNOS {Rat (Rattus	99.4
d1i16a_	130	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.4
d1ueza_	101	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.4
d1wf7a_	103	Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1	99.39
d1x45a1	85	Amyloid beta A4 precursor protein-binding family A	99.38
d1x6da1	107	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.38
d1va8a1	100	Maguk p55 subfamily member 5 {Mouse (Mus musculus)	99.37
d1x5ra1	99	Glutamate receptor interacting protein 2, GRIP2 (K	99.34
d1ujda_	117	Hypothetical protein KIAA0559 {Human (Homo sapiens	99.34
d1v5la_	103	Alpha-actinin-2 associated LIM protein {Mouse (Mus	99.31
d1ufxa_	103	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.31
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	99.3
d1v5qa_	122	Glutamate receptor interacting protein {Mouse (Mus	99.3
d1v6ba_	118	Harmonin {Mouse (Mus musculus) [TaxId: 10090]}	99.29
d2cs5a1	106	Tyrosine-protein phosphatase non-receptor type 4,	99.28
d1ujva_	96	Membrane associated guanylate kinase inverted-2 (M	99.28
d2cssa1	108	Regulating synaptic membrane exocytosis protein 1,	99.27
d1wg6a_	127	Partitioning-defective 3-like protein, PAR3-L (RIK	99.26
d1fc6a3	92	Photosystem II D1 C-terminal processing protease {	99.2
d1wh1a_	124	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.15
d2z9ia1	88	Protease PepD {Mycobacterium tuberculosis [TaxId:	99.05
d2hgaa1	103	Uncharacterized protein MTH1368 {Methanobacterium	98.95
d1lcya1	100	Mitochondrial serine protease HtrA2 {Human (Homo s	98.9
d1ky9b2	88	Protease Do (DegP, HtrA), C-terminal domains {Esch	98.83
d1ky9a1	94	Protease Do (DegP, HtrA), C-terminal domains {Esch	98.64
d2i6va1	87	General secretion pathway protein C, EpsC {Vibrio	98.64
d1k32a1	91	Tricorn protease {Archaeon Thermoplasma acidophilu	98.63
d1sota1	99	Stress sensor protease DegS, C-terminal domain {Es	98.55
d1wgra_	100	Growth factor receptor-bound protein 7, GRB-7 {Hum	98.44
d1mixa1	114	Talin {Chicken (Gallus gallus) [TaxId: 9031]}	97.04
d2al6a1	123	Focal adhesion kinase 1 {Chicken (Gallus gallus) [	96.64
d1xtea_	116	Serine/threonine-protein kinase Sgk3, Cisk {Mouse	95.03
d1h4ra1	111	Merlin {Human (Homo sapiens) [TaxId: 9606]}	94.8
d1gg3a1	106	Erythroid membrane protein 4.1R {Human (Homo sapie	94.5
d1wxaa1	103	Afadin {Mouse (Mus musculus) [TaxId: 10090]}	93.7
d1ef1a1	111	Moesin {Human (Homo sapiens) [TaxId: 9606]}	93.66
d1ocsa_	132	Sorting nexin grd19 {Baker's yeast (Saccharomyces	90.61
d1c1yb_	77	c-Raf1 RBD {Human (Homo sapiens) [TaxId: 9606]}	86.62
d1wxma1	73	A-Raf proto-oncogene serine/threonine-protein kina	86.1
d1kmda_	117	Vam7p {Baker's yeast (Saccharomyces cerevisiae) [T	83.77

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=5.8e-16  Score=119.92  Aligned_cols=83  Identities=37%  Similarity=0.550  Sum_probs=75.2

Q ss_pred             CCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHH
Q psy2827           7 TGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVV   86 (373)
Q Consensus         7 ~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~   86 (373)
                      ..||.|+|.|+..+|||++.++..             ..+++|..|.+||||+++||++||+|++|||.++.+++++++.
T Consensus         2 ~~Pr~v~l~k~~~g~Gf~i~~~~~-------------~~~~~V~~V~~g~~A~~aGl~~GD~Il~VNg~~v~~~t~~e~~   68 (91)
T d1g9oa_           2 MLPRLCCLEKGPNGYGFHLHGEKG-------------KLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVV   68 (91)
T ss_dssp             CCCEEEEEECBTTBCCEEEEECTT-------------CSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHH
T ss_pred             CCCEEEEEEECCCeeeEEEEecCC-------------CCCEEEEEEcCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHH
Confidence            358999999999999999988632             2345899999999999999999999999999999999999999


Q ss_pred             HHHHhCCCeEEEEEEe
Q psy2827          87 ELIKSGGDVLSLTVIS  102 (373)
Q Consensus        87 ~~i~~~g~~v~l~V~r  102 (373)
                      ++++.++..++|+|.+
T Consensus        69 ~ll~~~~~~v~L~v~~   84 (91)
T d1g9oa_          69 SRIRAALNAVRLLVVD   84 (91)
T ss_dssp             HHHHTCSSEEEEEEEC
T ss_pred             HHHHcCCCeEEEEEEC
Confidence            9999988999999875

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=1.3e-15  Score=120.84  Aligned_cols=97  Identities=35%  Similarity=0.557  Sum_probs=79.8

Q ss_pred             CcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHH
Q psy2827           8 GPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVV   86 (373)
Q Consensus         8 ~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~   86 (373)
                      .+|+|+|.|.+ .+|||+++++...+..........+.++++|..|.+||||++|||++||+|++|||+++.+++|++++
T Consensus         5 ~~~tV~l~r~~~~~fGf~l~g~~~~~~~~~~~~~~~~~~~~~I~~v~~g~~A~~aGL~~GD~Il~INg~~v~~~~h~evv   84 (104)
T d1q3oa_           5 KEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVV   84 (104)
T ss_dssp             EEEEEEEECCTTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHH
T ss_pred             ceEEEEEEECCCCccCEEEEeecccCccccccccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEEcCeEcCCCCHHHHH
Confidence            47899999875 58999999885443322222233334566899999999999999999999999999999999999999


Q ss_pred             HHHHhCCCeEEEEEEecC
Q psy2827          87 ELIKSGGDVLSLTVISVS  104 (373)
Q Consensus        87 ~~i~~~g~~v~l~V~r~~  104 (373)
                      +++++++..++|+|.+..
T Consensus        85 ~~ik~~~~~v~L~V~~~~  102 (104)
T d1q3oa_          85 NMIRQGGNTLMVKVVMVT  102 (104)
T ss_dssp             HHHHHTTTEEEEEEEEEE
T ss_pred             HHHHcCCCeEEEEEEecC
Confidence            999999999999998753

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=8.5e-16  Score=116.63  Aligned_cols=78  Identities=23%  Similarity=0.542  Sum_probs=71.9

Q ss_pred             CCCcEEEEEEcCCCC-ccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHH
Q psy2827           6 QTGPREVQIAKSDTG-FGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQ   84 (373)
Q Consensus         6 ~~~~r~v~l~r~~~g-~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~   84 (373)
                      ...||+|+|.|+..+ |||++.++                   .|..|.+||||+++||++||+|++|||+++.++++++
T Consensus         2 ~~~pr~V~l~k~~~g~~Gf~i~~g-------------------~V~~v~~g~~A~~~Gl~~GD~Il~INg~~v~~~t~~~   62 (82)
T d1r6ja_           2 AMDPRTITMHKDSTGHVGFIFKNG-------------------KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQ   62 (82)
T ss_dssp             TTCCEEEEEECCTTSCCCEEEETT-------------------EEEEECTTSHHHHHTCCSSEEEEEETTEECTTCCHHH
T ss_pred             CCCCEEEEEEeCCCCCcCEEEEEE-------------------EEEEECCCChHHhcCcCCCCEEEEeCCeEEeeCCHHH
Confidence            467899999999765 99999865                   5999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCeEEEEEEe
Q psy2827          85 VVELIKSGGDVLSLTVIS  102 (373)
Q Consensus        85 ~~~~i~~~g~~v~l~V~r  102 (373)
                      +.+++++++..++|+|..
T Consensus        63 ~~~ll~~~~~~v~l~v~p   80 (82)
T d1r6ja_          63 IADILSTSGTVVTITIMP   80 (82)
T ss_dssp             HHHHHHHSCSEEEEEEEE
T ss_pred             HHHHHHcCCCEEEEEEEc
Confidence            999999999999999863

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=3e-15  Score=118.32  Aligned_cols=86  Identities=35%  Similarity=0.610  Sum_probs=77.7

Q ss_pred             CCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCH
Q psy2827           4 TQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATH   82 (373)
Q Consensus         4 ~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~   82 (373)
                      ..|+.||+|+|.|++.+|||+|.++..             .++++|..|.++|||+++| |++||+|++|||+.+.++++
T Consensus         5 ~~~~~~r~V~l~k~~~glG~~i~~~~~-------------~~gv~V~~v~~gs~A~~~G~l~~GD~Il~INg~~v~~~~~   71 (102)
T d1tp5a1           5 DIPREPRRIVIHRGSTGLGFNIVGGED-------------GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASH   71 (102)
T ss_dssp             CCCCSCEEEEEECTTSCCCEEEEECGG-------------GCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCH
T ss_pred             CCCCCCEEEEEEeCCCcccEEEEeccC-------------CCCEEEEEecCCchHHHcCCCcccCEEEEECCeEcCCCCH
Confidence            457789999999999999999998643             2356899999999999999 99999999999999999999


Q ss_pred             HHHHHHHHhCCCeEEEEEEe
Q psy2827          83 KQVVELIKSGGDVLSLTVIS  102 (373)
Q Consensus        83 ~~~~~~i~~~g~~v~l~V~r  102 (373)
                      +++..++++++..++|+|.+
T Consensus        72 ~ev~~~l~~~~~~v~L~v~~   91 (102)
T d1tp5a1          72 EQAAIALKNAGQTVTIIAQY   91 (102)
T ss_dssp             HHHHHHHHTSCSEEEEEEEE
T ss_pred             HHHHHHHHcCCCeEEEEEEE
Confidence            99999999988999999876

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=4.2e-15  Score=115.03  Aligned_cols=88  Identities=26%  Similarity=0.357  Sum_probs=78.3

Q ss_pred             CCCCCCcEEEEEEcCC--CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCC
Q psy2827           3 STQQTGPREVQIAKSD--TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGA   80 (373)
Q Consensus         3 ~~~~~~~r~v~l~r~~--~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~   80 (373)
                      ||.|...+.++|.|.+  .+|||+|.++..             .++++|..|.++|||+++||++||+|++|||+++.++
T Consensus         1 sP~p~e~~~v~l~k~~~~~~~Gf~i~~~~~-------------~~g~~V~~V~~~g~A~~~gL~~GD~Il~VNg~~v~~~   67 (91)
T d1m5za_           1 SPTPVELHKVTLYKDSGMEDFGFSVADGLL-------------EKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDF   67 (91)
T ss_dssp             CCSCCEEEEEEEECCTTCSSSSEEEEECTT-------------SSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTC
T ss_pred             CcCCCceEEEEEEECCCCCceeEEEeccCC-------------CCCEEEEEECCCChhHhCcCCCCCEEEEECCEECCCC
Confidence            5777888999999975  479999987643             2456899999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhCCCeEEEEEEec
Q psy2827          81 THKQVVELIKSGGDVLSLTVISV  103 (373)
Q Consensus        81 s~~~~~~~i~~~g~~v~l~V~r~  103 (373)
                      ++.+++.++++++..++|+|.|.
T Consensus        68 t~~~~~~~l~~~~~~v~L~v~R~   90 (91)
T d1m5za_          68 DCCLVVPLIAESGNKLDLVISRN   90 (91)
T ss_dssp             CHHHHHHHHHTSTTEEEEEEEEC
T ss_pred             CHHHHHHHHHCCCCEEEEEEEEC
Confidence            99999999999899999999874

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.9e-15  Score=112.33  Aligned_cols=76  Identities=32%  Similarity=0.489  Sum_probs=69.8

Q ss_pred             EEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh
Q psy2827          12 VQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS   91 (373)
Q Consensus        12 v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~   91 (373)
                      |+|.|+..||||++.++               .| ++|..|.++|||+++||++||+|++|||+++.++++.++...+++
T Consensus         1 v~l~r~~~g~Gf~l~~~---------------~~-~~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~v~~~i~~   64 (77)
T d2f5ya1           1 ITIPRGKDGFGFTICCD---------------SP-VRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRS   64 (77)
T ss_dssp             EEEECBTTBTSEEEECS---------------SS-CEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             CEEecCCCcccEEEECC---------------CC-EEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHC
Confidence            68999999999999875               23 379999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEEec
Q psy2827          92 GGDVLSLTVISV  103 (373)
Q Consensus        92 ~g~~v~l~V~r~  103 (373)
                      ++..++|+|.|.
T Consensus        65 ~~~~v~L~v~R~   76 (77)
T d2f5ya1          65 CPSEIILLVWRM   76 (77)
T ss_dssp             CSSEEEEEEEEC
T ss_pred             CCCEEEEEEEEE
Confidence            899999999874

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=3.3e-15  Score=116.08  Aligned_cols=89  Identities=30%  Similarity=0.542  Sum_probs=75.9

Q ss_pred             cEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHH
Q psy2827           9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVE   87 (373)
Q Consensus         9 ~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~~   87 (373)
                      .++|+|.|++.||||+|.|+.+.+.       ....++++|..|.++|||+++| |++||+|++|||+++.+++++++++
T Consensus         2 ~~~V~l~k~~~glG~~i~gg~~~~~-------~~~~~gi~I~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~   74 (93)
T d1rgra_           2 YEEITLERGNSGLGFSIAGGTDNPH-------IGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVE   74 (93)
T ss_dssp             EEEEEEECCSSCCSEEECCCSSSCS-------CTTCCCCCEEEECTTSHHHHHCCCCTTCEEEEETTEECSSSCHHHHHH
T ss_pred             CEEEEEEeCCCcCCEEEEeecCCCC-------cCCCCCEEEEEECCCChHHhcCCCCcCcEEEEECCEECCCCCHHHHHH
Confidence            3689999999999999988643221       0113456899999999999999 9999999999999999999999999


Q ss_pred             HHHhCCCeEEEEEEecC
Q psy2827          88 LIKSGGDVLSLTVISVS  104 (373)
Q Consensus        88 ~i~~~g~~v~l~V~r~~  104 (373)
                      ++++++..++|+|.|-.
T Consensus        75 ~l~~~~~~v~L~v~R~~   91 (93)
T d1rgra_          75 ALKEAGSIVRLYVMRRK   91 (93)
T ss_dssp             HHHHTTTEEEEEEECSC
T ss_pred             HHHcCCCEEEEEEEeCC
Confidence            99998899999998743

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3.2e-15  Score=116.90  Aligned_cols=93  Identities=28%  Similarity=0.492  Sum_probs=73.5

Q ss_pred             CcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHH
Q psy2827           8 GPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQV   85 (373)
Q Consensus         8 ~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~   85 (373)
                      .||+|+|.|++ .+|||++.|+...+...   ......++++|..|.++|||+++| |++||+|++|||+++.+++++++
T Consensus         1 qpr~V~l~k~~~~~lG~~i~gg~~~~~~~---~~~~~~~gi~V~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea   77 (96)
T d2fcfa1           1 QPRRVELWREPSKSLGISIVGGRGMGSRL---SNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQA   77 (96)
T ss_dssp             SCEEEEECCCC-CCCCEEEECCCC----------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHH
T ss_pred             CCEEEEEEeCCCCCCCEEEEcccCCCccc---ccccCCCCEEEEEECCCCHHHHcCCCcCCCEEEEECCEECCCCCHHHH
Confidence            48999999996 57999999874322111   111224567899999999999999 99999999999999999999999


Q ss_pred             HHHHHhCCCeEEEEEEec
Q psy2827          86 VELIKSGGDVLSLTVISV  103 (373)
Q Consensus        86 ~~~i~~~g~~v~l~V~r~  103 (373)
                      .+++++++..++|+|.|.
T Consensus        78 ~~~lk~~~~~v~L~V~r~   95 (96)
T d2fcfa1          78 VEAIRKAGNPVVFMVQSI   95 (96)
T ss_dssp             HHHHHTCCSSEEEEEECC
T ss_pred             HHHHHcCCCeEEEEEEEc
Confidence            999999889999999763

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.4e-15  Score=114.98  Aligned_cols=82  Identities=27%  Similarity=0.415  Sum_probs=71.9

Q ss_pred             cEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHH
Q psy2827           9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVEL   88 (373)
Q Consensus         9 ~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~   88 (373)
                      |++|++.+ +.+|||++.++.+.+           .| ++|..|.++|||+++||++||+|++|||+++.+++++++.++
T Consensus         2 p~~V~l~~-~~~~Gf~i~gg~~~~-----------~~-v~V~~v~~gs~A~~~~L~~GD~Il~VNg~~v~~~s~~ev~~~   68 (85)
T d1rgwa_           2 AYSVTLTG-PGPWGFRLQGGKDFN-----------MP-LTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNK   68 (85)
T ss_dssp             EEEEEECC-SSCCCEEECCCGGGT-----------SC-CBEEEECTTSHHHHSSCCCCSBEEEETTEECTTCCHHHHHHH
T ss_pred             CEEEEecC-CCCCCEEEEeecCCC-----------CC-EEEEEecCCChHHhCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            78899965 578999999875421           22 479999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEEEEEEec
Q psy2827          89 IKSGGDVLSLTVISV  103 (373)
Q Consensus        89 i~~~g~~v~l~V~r~  103 (373)
                      +++++..++|+|.|.
T Consensus        69 i~~~~~~v~L~V~R~   83 (85)
T d1rgwa_          69 IKSASYNLSLTLQKS   83 (85)
T ss_dssp             HTTCSSCEEEEEESC
T ss_pred             HHcCCCEEEEEEEEC
Confidence            999888999999874

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=8.5e-15  Score=113.51  Aligned_cols=87  Identities=32%  Similarity=0.538  Sum_probs=75.0

Q ss_pred             EEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHH
Q psy2827          10 REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVEL   88 (373)
Q Consensus        10 r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~~~   88 (373)
                      .+|+|.|++.||||++.++.+.+.       .+...+++|..|.++|||+++| |++||+|++|||+++.+++++++.++
T Consensus         3 ~~V~L~k~~~glG~~i~gg~~~~~-------~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~   75 (92)
T d2fe5a1           3 MEVNLLKGPKGLGFSIAGGIGNQH-------IPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVAS   75 (92)
T ss_dssp             EEEEEECCTTCSCEEEEECBTSCS-------BTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHH
T ss_pred             EEEEEEECCCccCEEEEeecCCcc-------CCCCCCEEEEEECCCCChhhcCCCCCCCEEEEeCCeecCCCCHHHHHHH
Confidence            579999999999999998753221       1123456899999999999999 99999999999999999999999999


Q ss_pred             HHhCCCeEEEEEEec
Q psy2827          89 IKSGGDVLSLTVISV  103 (373)
Q Consensus        89 i~~~g~~v~l~V~r~  103 (373)
                      +++++..++|+|.|.
T Consensus        76 lk~~~~~v~L~v~Rp   90 (92)
T d2fe5a1          76 LKNTSDMVYLKVAKP   90 (92)
T ss_dssp             HHTCCSEEEEEEECC
T ss_pred             HHcCCCEEEEEEECC
Confidence            999889999999874

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=1.1e-14  Score=114.38  Aligned_cols=94  Identities=41%  Similarity=0.572  Sum_probs=78.7

Q ss_pred             CCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHH
Q psy2827           6 QTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQ   84 (373)
Q Consensus         6 ~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~   84 (373)
                      |...++|+|.|+..+|||+|.+....++.    +......+++|..|.++|||+++| |++||+|++|||+++.++++++
T Consensus         2 pg~~~~V~L~k~~~~lG~~i~~~~~~~g~----~~~~~~~~i~V~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~~   77 (99)
T d1ozia_           2 PGDTFEVELAKTDGSLGISVTVLFDKGGV----NTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQ   77 (99)
T ss_dssp             TTCEEEEEEECCSSSCSEEEESCCSSSCS----SCSSSCCCEEEEEECSSSHHHHHTCCCTTCEEEEETTEECSSCCHHH
T ss_pred             CCCEEEEEEEECCCCCcEEEEeeccCCCc----ccccCCCCEEEEEECCCChHHhcCCCCccCEEEEECCEEcCCCCHHH
Confidence            56778999999988999999876432211    111123467899999999999999 9999999999999999999999


Q ss_pred             HHHHHHhCCCeEEEEEEec
Q psy2827          85 VVELIKSGGDVLSLTVISV  103 (373)
Q Consensus        85 ~~~~i~~~g~~v~l~V~r~  103 (373)
                      +..++++++..++|+|.|.
T Consensus        78 a~~~lk~~~~~v~L~v~R~   96 (99)
T d1ozia_          78 AVETLRNTGQVVHLLLEKG   96 (99)
T ss_dssp             HHHHHHHSCSEEEEEEECC
T ss_pred             HHHHHHCCCCeEEEEEEeC
Confidence            9999999889999999874

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.7e-14  Score=112.88  Aligned_cols=92  Identities=26%  Similarity=0.422  Sum_probs=77.8

Q ss_pred             CCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHH
Q psy2827           5 QQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQ   84 (373)
Q Consensus         5 ~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~   84 (373)
                      ......++++.|+..+|||+|.++.....      .....++++|..|.+||||+++||++||+|++|||..+.++++.+
T Consensus         5 ~~~~~~~v~l~k~~~glG~~i~gg~~~~~------~~~~~~~i~V~~V~~gg~A~~~GL~~GD~Il~VNg~~v~~~~~~~   78 (97)
T d1x5qa1           5 IEEEELTLTILRQTGGLGISIAGGKGSTP------YKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHE   78 (97)
T ss_dssp             CCCEEEEEEEECSSSSCSEEEEECTTSCC------SSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHH
T ss_pred             cCCeEEEEEEEeCCCeeCEEEEeccCCCC------ccCCCCCEEEEEECCCChhHhhcccCCCEEEEECCEECCCCCHHH
Confidence            34456789999999999999998754321      111235679999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCeEEEEEEe
Q psy2827          85 VVELIKSGGDVLSLTVIS  102 (373)
Q Consensus        85 ~~~~i~~~g~~v~l~V~r  102 (373)
                      +..++++++..+.|+|.|
T Consensus        79 ~~~~l~~~~~~v~l~v~R   96 (97)
T d1x5qa1          79 AVEALRGAGTAVQMRVWR   96 (97)
T ss_dssp             HHHHHHSCCSEEEEEEEE
T ss_pred             HHHHHhCCCCEEEEEEEE
Confidence            999999999999999987

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.2e-14  Score=115.83  Aligned_cols=96  Identities=24%  Similarity=0.353  Sum_probs=79.1

Q ss_pred             CCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHH
Q psy2827           5 QQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHK   83 (373)
Q Consensus         5 ~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~   83 (373)
                      .....++|+|.|++.+|||+|.|+.......    .....++++|..|.++|||+++| |++||+|++|||+++.+++++
T Consensus         5 ~~g~~~~V~l~k~~~~lGf~i~GG~~~~~~~----~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~~~t~~   80 (107)
T d1uhpa_           5 SSGKSLTLVLHRDSGSLGFNIIGGRPSVDNH----DGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHD   80 (107)
T ss_dssp             CSSEEEEEEECCSSSCCSEEEECCCSCCCCT----TSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHH
T ss_pred             CCCCEEEEEEEECCCccCEEEEecccCCCcc----cccCCCCEEEEEECCCCHHHHhCCCcceeEEeEECCEECCCCCHH
Confidence            4455789999999999999999874321110    11124566899999999999999 999999999999999999999


Q ss_pred             HHHHHHHhCCCeEEEEEEecC
Q psy2827          84 QVVELIKSGGDVLSLTVISVS  104 (373)
Q Consensus        84 ~~~~~i~~~g~~v~l~V~r~~  104 (373)
                      +++++|++++..+.++|.|..
T Consensus        81 eav~~lk~~~~~v~l~v~r~~  101 (107)
T d1uhpa_          81 QAVEAFKTAKEPIVVQVLRRT  101 (107)
T ss_dssp             HHHHHHHHCCSSEEEEEEECC
T ss_pred             HHHHHHHhCCCcEEEEEEECC
Confidence            999999998889999998743

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=5.4e-15  Score=117.47  Aligned_cols=96  Identities=29%  Similarity=0.477  Sum_probs=80.9

Q ss_pred             CCCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCC
Q psy2827           3 STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGAT   81 (373)
Q Consensus         3 ~~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s   81 (373)
                      |..+..+++++|.|++.+|||+|.++.....      ......+++|..|.++|||+++| |++||+|++|||+++.+++
T Consensus         2 s~g~~~~~~v~l~k~~~glGf~i~gg~~~~~------~~~~~~gi~V~~v~~gs~A~~~G~L~~GD~Il~INg~~v~~~~   75 (105)
T d1whaa_           2 SSGSSGRHVACLARSERGLGFSIAGGKGSTP------YRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEAR   75 (105)
T ss_dssp             CCCCCEEEEEEECCCTTCCSCEEECCTTSCC------SSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCC
T ss_pred             CCCCCCCEEEEEEECCCccCEEEEeccCCcc------cccCCCCEEEEEEcCCCchhhcCCccCCCEEEEECCEEcCCCc
Confidence            4556788999999999999999998754211      11123456899999999999999 9999999999999999999


Q ss_pred             HHHHHHHHHhCCCeEEEEEEecC
Q psy2827          82 HKQVVELIKSGGDVLSLTVISVS  104 (373)
Q Consensus        82 ~~~~~~~i~~~g~~v~l~V~r~~  104 (373)
                      +++++++|++++..++|+|.|..
T Consensus        76 ~~ev~~~l~~~~~~v~l~v~R~~   98 (105)
T d1whaa_          76 HDHAVSLLTAASPTIALLLEREA   98 (105)
T ss_dssp             HHHHHHHHTSCCSCEEEEEEECC
T ss_pred             HHHHHHHHHcCCCeEEEEEEECC
Confidence            99999999998889999998854

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=5.6e-15  Score=113.61  Aligned_cols=85  Identities=29%  Similarity=0.526  Sum_probs=73.8

Q ss_pred             CcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHH
Q psy2827           8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVV   86 (373)
Q Consensus         8 ~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~   86 (373)
                      ..|+|+|.|++.+|||+|.++.+.+.         ...+++|..|.++|||+++| |++||+|++|||+++.+++++++.
T Consensus         2 ~~~~V~l~K~~~~lG~~i~~g~~~~~---------~~~~i~I~~v~~~g~A~~~g~l~~GD~Il~INg~~v~~~~~~~v~   72 (88)
T d2fnea1           2 QCKSITLERGPDGLGFSIVGGYGSPH---------GDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAV   72 (88)
T ss_dssp             EEEEEEECCBTTBTSEEEEEEEEETT---------EEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHH
T ss_pred             eEEEEEEEeCCCccCEEEEeccCCCC---------CCcCEEEEEEcCCChHHHhCCCcCCcEEEEECCEECCCCCHHHHH
Confidence            46899999998899999997643211         12345899999999999998 999999999999999999999999


Q ss_pred             HHHHhCCCeEEEEEE
Q psy2827          87 ELIKSGGDVLSLTVI  101 (373)
Q Consensus        87 ~~i~~~g~~v~l~V~  101 (373)
                      +++++++..++|+|.
T Consensus        73 ~~l~~~~~~v~L~Vl   87 (88)
T d2fnea1          73 AILKRTKGTVTLMVL   87 (88)
T ss_dssp             HHHHHCCSSEEEEEE
T ss_pred             HHHHcCCCcEEEEEE
Confidence            999998899999886

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=1.4e-14  Score=111.81  Aligned_cols=86  Identities=29%  Similarity=0.449  Sum_probs=75.0

Q ss_pred             CCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHH
Q psy2827           6 QTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHK   83 (373)
Q Consensus         6 ~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~   83 (373)
                      +..+|+|+|.|.+ .+|||++.++.+.+            .+++|..|.|+|||+++| |++||+|++|||+++.+++++
T Consensus         2 ~~q~r~V~l~k~~~~~lG~~i~gg~~~~------------~~i~V~~V~~~~~A~~~G~L~~GD~Il~INg~~v~~~~~~   69 (90)
T d1qava_           2 SLQRRRVTVRKADAGGLGISIKGGRENK------------MPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHD   69 (90)
T ss_dssp             CSSCEEEEEECCTTTCCCEEEEEEGGGT------------EEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHH
T ss_pred             CceEEEEEEEeCCCCccCEEEEccccCC------------CCEEEEEEcCCCceeeCCCCCccCEEEEECCEECCCCCHH
Confidence            4567999999976 57999999864321            235899999999999999 999999999999999999999


Q ss_pred             HHHHHHHhCCCeEEEEEEec
Q psy2827          84 QVVELIKSGGDVLSLTVISV  103 (373)
Q Consensus        84 ~~~~~i~~~g~~v~l~V~r~  103 (373)
                      ++..++++++..++|+|.+.
T Consensus        70 ~~~~~l~~~~~~v~l~v~~~   89 (90)
T d1qava_          70 EAVQALKKTGKEVVLEVKYM   89 (90)
T ss_dssp             HHHHHHHTCCSEEEEEEEEC
T ss_pred             HHHHHHHhCCCeEEEEEEEe
Confidence            99999999888999998764

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=2.3e-15  Score=120.78  Aligned_cols=84  Identities=27%  Similarity=0.484  Sum_probs=74.0

Q ss_pred             CCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHH
Q psy2827           5 QQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQ   84 (373)
Q Consensus         5 ~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~   84 (373)
                      .+..||+|+|.|+..+|||+|.++               .| ++|..|.++|||+++||++||+|++|||+++.++++++
T Consensus        12 ~~~~pr~v~l~k~~~g~Gf~i~g~---------------~~-v~V~~V~~~spA~~~GL~~GD~Il~INg~~v~~~~~~e   75 (111)
T d1vaea_          12 RWSPPRGIHFTVEEGDLGFTLRGN---------------TP-VQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSE   75 (111)
T ss_dssp             EECCCCCCCEECCSSCCSCCEESS---------------SS-CEECCCCTTSSHHHHHCCTTCEEEEETTEECSSCCHHH
T ss_pred             CCCCCEEEEEEECCCccCEEEECC---------------cc-EEEEEEcCCChHHhcccCcccEEEEECCEEcCCCCHHH
Confidence            345789999999999999999875               23 37999999999999999999999999999999999999


Q ss_pred             HHHHHHhC-CCeEEEEEEecC
Q psy2827          85 VVELIKSG-GDVLSLTVISVS  104 (373)
Q Consensus        85 ~~~~i~~~-g~~v~l~V~r~~  104 (373)
                      ++++|+++ +..++|+|.+..
T Consensus        76 v~~llk~~~~~~v~l~v~~~~   96 (111)
T d1vaea_          76 VMKLLKSFGGEEVEMKVVSLL   96 (111)
T ss_dssp             HHHHHHHTTTSEECEEEECEE
T ss_pred             HHHHHHcCCCCeEEEEEECCC
Confidence            99999985 678889887643

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.2e-14  Score=111.55  Aligned_cols=91  Identities=22%  Similarity=0.369  Sum_probs=75.6

Q ss_pred             cEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHH
Q psy2827           9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVE   87 (373)
Q Consensus         9 ~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~~   87 (373)
                      ..+|+|.|++.+|||++.|+....+      ......+++|.+|.++|||+++| |++||+|++|||+++.+++++++.+
T Consensus         3 ~~~V~L~k~~~glG~~i~g~~~~~~------~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~   76 (94)
T d1wf8a1           3 LFPVELEKDEDGLGISIIGMGVGAD------AGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAAT   76 (94)
T ss_dssp             EEEEEEECBTTBSCEEEEEEEESCC------TTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHH
T ss_pred             EEEEEEEeCCCCcCEEEEeccCCCC------CCcCCCCEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHH
Confidence            4689999999999999987532111      00112346899999999999999 9999999999999999999999999


Q ss_pred             HHHhCCCeEEEEEEecCc
Q psy2827          88 LIKSGGDVLSLTVISVSP  105 (373)
Q Consensus        88 ~i~~~g~~v~l~V~r~~~  105 (373)
                      ++++++..++|+|.|..|
T Consensus        77 ~l~~~~~~v~L~V~R~kP   94 (94)
T d1wf8a1          77 VLRNTKGNVRFVIGREKP   94 (94)
T ss_dssp             HHHHCCSEEEEEEEEECC
T ss_pred             HHHcCCCeEEEEEEeCCC
Confidence            999988899999988654

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=3.4e-14  Score=113.73  Aligned_cols=93  Identities=26%  Similarity=0.391  Sum_probs=79.8

Q ss_pred             CCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCH
Q psy2827           4 TQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATH   82 (373)
Q Consensus         4 ~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~   82 (373)
                      ......++|+|.|++.+|||+|.++.+..         ...++++|..|.++|||+++| |++||+|++|||+.+.++++
T Consensus         4 ~~~g~~~~V~l~k~~~glG~~i~~~~~~~---------~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~   74 (110)
T d1um1a_           4 GSSGYVFTVELERGPSGLGMGLIDGMHTH---------LGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGY   74 (110)
T ss_dssp             CSCCCEEEEEEECCTTCCCEEEEETTTST---------TCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCH
T ss_pred             CCCCCEEEEEEEECCCCCCEEEEeecCCC---------CCCCCEEEEEECCCCHHHHcCCCccCCEEEEECCEECCCCCH
Confidence            34556799999999999999999874321         113567899999999999999 99999999999999999999


Q ss_pred             HHHHHHHHhCCCeEEEEEEecCc
Q psy2827          83 KQVVELIKSGGDVLSLTVISVSP  105 (373)
Q Consensus        83 ~~~~~~i~~~g~~v~l~V~r~~~  105 (373)
                      ++++++|++++..+.|+|.|..+
T Consensus        75 ~ev~~llk~~~~~v~l~v~r~~~   97 (110)
T d1um1a_          75 LRAVDLIRHGGKKMRFLVAKSDV   97 (110)
T ss_dssp             HHHHHHHHTCCSEEEEEEECCCH
T ss_pred             HHHHHHHHcCCCeEEEEEEeCCC
Confidence            99999999988999999987544

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.54  E-value=3.9e-14  Score=110.09  Aligned_cols=88  Identities=22%  Similarity=0.367  Sum_probs=74.3

Q ss_pred             cEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHH
Q psy2827           9 PREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVV   86 (373)
Q Consensus         9 ~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~   86 (373)
                      -++|+|.|.+ .+|||++.++...+..      ....++++|..|.|+|||+++| |++||+|++|||+++.+++++++.
T Consensus         4 i~~V~L~k~~~~~lG~~i~gg~~~~~~------~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~   77 (94)
T d1ihja_           4 IHMVTLDKTGKKSFGICIVRGEVKDSP------NTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVI   77 (94)
T ss_dssp             EEEEEEECTTSSSCCEEEEEEEECCSS------SCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHH
T ss_pred             EEEEEEEeCCCCCcCEEEeccccCCCC------ccCCCCEEEEEECCCCHHHHhCCCChhcEEEEECCEECCCCCHHHHH
Confidence            4689999976 5899999987543211      1123456899999999999999 999999999999999999999999


Q ss_pred             HHHHhCCCeEEEEEEe
Q psy2827          87 ELIKSGGDVLSLTVIS  102 (373)
Q Consensus        87 ~~i~~~g~~v~l~V~r  102 (373)
                      +++++++..++|+|.|
T Consensus        78 ~ll~~~~~~v~L~V~R   93 (94)
T d1ihja_          78 DLIKEADFKIELEIQT   93 (94)
T ss_dssp             HHHHHSCSEEEEEEEE
T ss_pred             HHHHcCCCEEEEEEEe
Confidence            9999988999999976

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=4.5e-14  Score=111.81  Aligned_cols=85  Identities=33%  Similarity=0.533  Sum_probs=72.9

Q ss_pred             CCCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHH
Q psy2827           5 QQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHK   83 (373)
Q Consensus         5 ~~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~   83 (373)
                      ....||+|+|.|.+ .+|||++.++.+.            ..+++|..|.++|||+++||++||+|++|||+++.+++++
T Consensus        12 ~~~~pr~V~l~r~~~~~lGf~i~gg~~~------------~~gi~V~~V~~~s~A~~~GL~~GD~Il~VNg~~v~~~~~~   79 (104)
T d1wi2a_          12 TQFLPRIVTLKKPPGAQLGFNIRGGKAS------------QLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHS   79 (104)
T ss_dssp             CSSCCEEEEECCCTTCCCSEEEECCSSS------------CCCCEEEEECTTSHHHHHTCCTTCEEEEETTEECSSCCHH
T ss_pred             ccCcCEEEEEEeCCCCCcceEEEccccC------------CCCEEEEEECCCChhHhcccccCCEEEEECCEECCCCCHH
Confidence            34578999999986 5899999986432            2345899999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCeEEEEEEe
Q psy2827          84 QVVELIKSGGDVLSLTVIS  102 (373)
Q Consensus        84 ~~~~~i~~~g~~v~l~V~r  102 (373)
                      +++++++.++ .++++|.+
T Consensus        80 ev~~llk~~~-~v~l~V~~   97 (104)
T d1wi2a_          80 KAVEILKTAR-EISMRVRF   97 (104)
T ss_dssp             HHHHHHHHSS-SEEEEEEC
T ss_pred             HHHHHHhcCC-eEEEEEEE
Confidence            9999999864 58888865

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=4.7e-14  Score=114.14  Aligned_cols=86  Identities=26%  Similarity=0.357  Sum_probs=76.8

Q ss_pred             CCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHH
Q psy2827           4 TQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHK   83 (373)
Q Consensus         4 ~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~   83 (373)
                      |....+|+|+|.|+..+|||++.++.+              ++++|..|.++|||+++||++||+|++|||+++.+++++
T Consensus        15 p~~~~~r~v~l~k~~~glG~~i~gg~~--------------~gi~V~~V~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~   80 (117)
T d1uita_          15 PYVEEPRHVKVQKGSEPLGISIVSGEK--------------GGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQ   80 (117)
T ss_dssp             CCSCCCEEEEEECSSCCCCEEEEECTT--------------SCEEEEEECTTSHHHHHTCCTTCEECEETTEETTTCCHH
T ss_pred             CCCCCCEEEEEEeCCCccCEEEEccCC--------------CCEEEEEEecCChHHhCCCCCCCEeeeECCcccCCCCHH
Confidence            455678999999999999999998632              346899999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCeEEEEEEec
Q psy2827          84 QVVELIKSGGDVLSLTVISV  103 (373)
Q Consensus        84 ~~~~~i~~~g~~v~l~V~r~  103 (373)
                      ++..+++.++..++|++.+.
T Consensus        81 ~~~~~l~~~~~~v~l~v~~~  100 (117)
T d1uita_          81 QARLIIGQQCDTITILAQYN  100 (117)
T ss_dssp             HHHHHTTSCCSEEEEEECCC
T ss_pred             HHHHHHHCCCCeEEEEEEEC
Confidence            99999999889999988653

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1e-13  Score=105.67  Aligned_cols=79  Identities=27%  Similarity=0.429  Sum_probs=70.2

Q ss_pred             CcEEEEEEcCCC-CccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHH
Q psy2827           8 GPREVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVV   86 (373)
Q Consensus         8 ~~r~v~l~r~~~-g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~   86 (373)
                      .||.|++.|+.. +|||++.+..               .+++|..|.+||||+++||++||+|++|||+++.+++++++.
T Consensus         2 ~pr~v~l~k~~~~~lG~~l~~~~---------------~g~~V~~v~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~v~   66 (85)
T d1w9ea1           2 DPREVILCKDQDGKIGLRLKSID---------------NGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAH   66 (85)
T ss_dssp             CCEEEEEECCTTSCCSEEEEEET---------------TEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHH
T ss_pred             CCEEEEEEeCCCCCEeEEEEeCC---------------CCEEEEEECCCCHHHHcCCCCccEEEEECCEEeCCCCHHHHH
Confidence            479999999875 5999998762               245899999999999999999999999999999999999999


Q ss_pred             HHHHh-CCCeEEEEEE
Q psy2827          87 ELIKS-GGDVLSLTVI  101 (373)
Q Consensus        87 ~~i~~-~g~~v~l~V~  101 (373)
                      ++++. .+..++++|.
T Consensus        67 ~~lk~~~~~~v~l~v~   82 (85)
T d1w9ea1          67 KVLKQAFGEKITMTIR   82 (85)
T ss_dssp             HHHHHCCSSEEEEEEE
T ss_pred             HHHhcCCCCEEEEEEe
Confidence            99988 5788888875

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=1.2e-13  Score=107.49  Aligned_cols=84  Identities=25%  Similarity=0.470  Sum_probs=73.9

Q ss_pred             cEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHH
Q psy2827           9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVE   87 (373)
Q Consensus         9 ~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~~   87 (373)
                      ..+|+|.|.+.+|||++.++.+.            ..+++|..+.++|||+++| |++||+|++|||+++.+++++++..
T Consensus         4 i~tV~l~k~~~~lG~~i~g~~~~------------~~~v~I~~I~~g~~A~~~g~L~~GD~Il~INg~~v~~~~~~ev~~   71 (95)
T d1n7ea_           4 IYTVELKRYGGPLGITISGTEEP------------FDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIH   71 (95)
T ss_dssp             EEEEEEECTTSCCCEEEECCSST------------TSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHH
T ss_pred             EEEEEEEECCCcEeEEEEecccC------------CCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            47899999989999999976432            1224899999999999999 9999999999999999999999999


Q ss_pred             HHHhCCCeEEEEEEecC
Q psy2827          88 LIKSGGDVLSLTVISVS  104 (373)
Q Consensus        88 ~i~~~g~~v~l~V~r~~  104 (373)
                      +++++++.+.|+|.+..
T Consensus        72 ~l~~~~~~v~l~v~r~~   88 (95)
T d1n7ea_          72 LLQMAGETVTLKIKKQT   88 (95)
T ss_dssp             HHHTCCSEEEEEEECCC
T ss_pred             HHHcCCCeEEEEEEECC
Confidence            99998899999998743

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=9.6e-14  Score=106.55  Aligned_cols=80  Identities=20%  Similarity=0.387  Sum_probs=71.1

Q ss_pred             CcEEEEEEcCCC-CccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHH
Q psy2827           8 GPREVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQV   85 (373)
Q Consensus         8 ~~r~v~l~r~~~-g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~   85 (373)
                      ++|.|++.|++. +|||++.++..              ++++|..|.+||||+++| |++||+|++|||+++.+++++++
T Consensus         1 r~R~V~l~k~~~~~lG~~l~~~~~--------------~~~~I~~v~~gg~A~~~g~l~~GD~Il~INg~~v~~~~~~~~   66 (88)
T d1kwaa_           1 RSRLVQFQKNTDEPMGITLKMNEL--------------NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQL   66 (88)
T ss_dssp             CCEEEEEEECSSSCCCEEEECSCG--------------GGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHH
T ss_pred             CcEEEEEEeCCCCCccEEEEEcCC--------------CCEEEEEECCCCHHHHcCCCccCcEEEEECCEECCCCCHHHH
Confidence            589999999874 79999987521              235899999999999999 99999999999999999999999


Q ss_pred             HHHHHhCCCeEEEEEE
Q psy2827          86 VELIKSGGDVLSLTVI  101 (373)
Q Consensus        86 ~~~i~~~g~~v~l~V~  101 (373)
                      .+++++++..++|++.
T Consensus        67 ~~ll~~~~~~v~L~i~   82 (88)
T d1kwaa_          67 QKMLREMRGSITFKIV   82 (88)
T ss_dssp             HHHHHHCCEEEEEEEE
T ss_pred             HHHHHcCCCcEEEEEE
Confidence            9999998788888886

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.5e-13  Score=106.24  Aligned_cols=84  Identities=26%  Similarity=0.440  Sum_probs=70.6

Q ss_pred             EEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHH
Q psy2827          10 REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVEL   88 (373)
Q Consensus        10 r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~~~   88 (373)
                      .+|++.|. .||||++.++.+.+         ...++++|..|.+||||+++| |++||+|++|||+++.+++++++.++
T Consensus         6 ~~v~l~~~-~glG~~i~g~~~~~---------~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~ea~~~   75 (92)
T d1t2ma1           6 ITVTLKKQ-NGMGLSIVAAKGAG---------QDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAEL   75 (92)
T ss_dssp             EEEEEECS-SSCCEEEEEECCSS---------CCSCEEEEEEECTTSHHHHHTCCCSSEEEEEETTEECTTCCHHHHHHH
T ss_pred             EEEEEeCC-CccCEEEEeecCCC---------CCCCCEEEEEEcCCChHHhcCCCCcccEeeeeCCeecCCCCHHHHHHH
Confidence            45566554 58999998874321         113456899999999999999 99999999999999999999999999


Q ss_pred             HHhCCCeEEEEEEec
Q psy2827          89 IKSGGDVLSLTVISV  103 (373)
Q Consensus        89 i~~~g~~v~l~V~r~  103 (373)
                      +++++..++|+|.|.
T Consensus        76 l~~~~~~v~L~v~R~   90 (92)
T d1t2ma1          76 MTRTSSVVTLEVAKQ   90 (92)
T ss_dssp             HHSCCSEEEEEEEEC
T ss_pred             HHcCCCeEEEEEEeC
Confidence            999889999999873

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.6e-13  Score=103.04  Aligned_cols=74  Identities=26%  Similarity=0.563  Sum_probs=66.5

Q ss_pred             EEEEEEcCC--CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHH
Q psy2827          10 REVQIAKSD--TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVE   87 (373)
Q Consensus        10 r~v~l~r~~--~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~   87 (373)
                      +++.+.|..  .+|||++.++                   +|..|.+||||+++||++||+|++|||+++.+++++++.+
T Consensus         2 ~tv~l~r~~~~~~lGf~i~~g-------------------~V~~V~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~~~   62 (79)
T d1y7na1           2 TTVLIRRPDLRYQLGFSVQNG-------------------IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVH   62 (79)
T ss_dssp             EEEEEEESSTTSCCCEEEETT-------------------EEEEECTTSHHHHHTCCSSCEEEEETTEECTTSCHHHHHH
T ss_pred             EEEEEEcCCCCCCcCEEEECC-------------------EEEEEcCCCHHHHCCCCCCCEEEEECCEEeCCCCHHHHHH
Confidence            578888754  5799999765                   6999999999999999999999999999999999999999


Q ss_pred             HHHhCCCeEEEEEEe
Q psy2827          88 LIKSGGDVLSLTVIS  102 (373)
Q Consensus        88 ~i~~~g~~v~l~V~r  102 (373)
                      ++++++..+.|++..
T Consensus        63 ll~~~~~~v~l~viP   77 (79)
T d1y7na1          63 ILSNAVGEIHMKTMP   77 (79)
T ss_dssp             HHHHCCEEEEEEEEC
T ss_pred             HHHcCCCEEEEEEEc
Confidence            999988889998853

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=6.4e-14  Score=108.87  Aligned_cols=83  Identities=25%  Similarity=0.334  Sum_probs=70.0

Q ss_pred             CcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHH
Q psy2827           8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVE   87 (373)
Q Consensus         8 ~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~   87 (373)
                      ...+|++ +++.+|||+|.++.+..            ..++|..|.+++||+++||++||+|++|||+++.++++.++++
T Consensus         6 ~~~tv~~-~g~~~~Gf~i~gg~d~~------------~~i~V~~v~~gs~A~~~gL~~GD~Il~VNg~~v~~~~~~~~~~   72 (94)
T d1vb7a_           6 SGLTVDV-AGPAPWGFRISGGRDFH------------TPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQS   72 (94)
T ss_dssp             CCEEEEE-CSSSCCSBCCEEETTTT------------EEEECCCBCTTSSHHHHTCCTTCEEEEETTEECTTCCHHHHHH
T ss_pred             ceEEEEE-ECCCcCCEEEEeeccCC------------CCEEEEeccCCChhhhCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            3345555 44578999999875421            2248999999999999999999999999999999999999999


Q ss_pred             HHHhCCCeEEEEEEec
Q psy2827          88 LIKSGGDVLSLTVISV  103 (373)
Q Consensus        88 ~i~~~g~~v~l~V~r~  103 (373)
                      ++++++..+.|+|.|.
T Consensus        73 ~l~~~~~~v~L~V~R~   88 (94)
T d1vb7a_          73 KIRQSASPLRLQLDRS   88 (94)
T ss_dssp             HHHTCCSSEEEEEECC
T ss_pred             HHHcCCCeEEEEEEEC
Confidence            9999889999999874

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.46  E-value=2.1e-13  Score=106.76  Aligned_cols=91  Identities=29%  Similarity=0.443  Sum_probs=73.8

Q ss_pred             cEEEEEEcCC--CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHH
Q psy2827           9 PREVQIAKSD--TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQV   85 (373)
Q Consensus         9 ~r~v~l~r~~--~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~   85 (373)
                      .|.|+|.|.+  .+|||+|.++.+.+.   ..++....++++|..|.|+|||+++| |++||+|++|||+++.+++++++
T Consensus         3 ~r~V~L~k~~~~~~lG~~i~gg~~~~~---~~~~~~~~~gi~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~~~~~~   79 (98)
T d1rzxa_           3 HRRVRLLKHGSDKPLGFYIRDGTSVRV---TASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQV   79 (98)
T ss_dssp             CEEEEEECCCSSSCCSEEEEEEEEEEC---CSSSCEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEECTTCCHHHH
T ss_pred             cEEEEEEECCCCCcccEEEecccCCCc---cccCccCCCCEEEEEECCCChHHhcCcCCCCcEEeeECCEECCCCCHHHH
Confidence            4779999864  579999998743211   11122224567899999999999999 99999999999999999999999


Q ss_pred             HHHHHhCCCeEEEEEEe
Q psy2827          86 VELIKSGGDVLSLTVIS  102 (373)
Q Consensus        86 ~~~i~~~g~~v~l~V~r  102 (373)
                      ..++++++..++|+|.+
T Consensus        80 ~~~l~~~~~~v~l~v~p   96 (98)
T d1rzxa_          80 TDMMVANSSNLIITVKP   96 (98)
T ss_dssp             HHHHHHTCTEEEEEEEC
T ss_pred             HHHHHcCCCeEEEEEEe
Confidence            99999988899998864

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.8e-13  Score=108.88  Aligned_cols=97  Identities=27%  Similarity=0.509  Sum_probs=78.8

Q ss_pred             CCCCCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCC
Q psy2827           3 STQQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGA   80 (373)
Q Consensus         3 ~~~~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~   80 (373)
                      |+.....++|+|.|.+ .+|||+|.++...+.     +......+++|..|.++|||+++| |++||+|++|||+++.++
T Consensus         5 ssg~~~~~~V~l~r~~~~~lGf~l~~g~~~~~-----~~~~~~~~~~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~   79 (114)
T d1uewa_           5 SSGSLQTSDVVIHRKENEGFGFVIISSLNRPE-----SGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINM   79 (114)
T ss_dssp             CSCCCCCEEEEEECCTTSCCCEEEECCCCSCC-----SSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTS
T ss_pred             CCCCceeEEEEEEeCCCCCCCEEEeeecccCC-----CCccCcCCEEEEEECCCCHHHhhccCCcCcEEeEeCCcccCCC
Confidence            4455677899999986 479999998754321     111123345899999999999998 999999999999999999


Q ss_pred             CHHHHHHHHHhCCCeEEEEEEecC
Q psy2827          81 THKQVVELIKSGGDVLSLTVISVS  104 (373)
Q Consensus        81 s~~~~~~~i~~~g~~v~l~V~r~~  104 (373)
                      +++++.++|++++..++|+|.|..
T Consensus        80 ~~~ev~~ll~~~~~~v~l~V~r~~  103 (114)
T d1uewa_          80 PHADIVKLIKDAGLSVTLRIIPQE  103 (114)
T ss_dssp             CHHHHHHHHHHTTTEEEEEECCCS
T ss_pred             cHHHHHHHHHcCCCeEEEEEEeCC
Confidence            999999999998889999998753

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=8.1e-14  Score=110.13  Aligned_cols=90  Identities=32%  Similarity=0.459  Sum_probs=77.8

Q ss_pred             CCCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCC
Q psy2827           3 STQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGAT   81 (373)
Q Consensus         3 ~~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s   81 (373)
                      +.......+|+|.|++.||||+|.++.+.            ..+++|..|.+++||+++| |++||+|++|||+++.+++
T Consensus         6 s~~~~e~~~v~l~k~~~glG~~i~gg~~~------------~~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~s   73 (103)
T d1wfva_           6 SGQDFDYFTVDMEKGAKGFGFSIRGGREY------------KMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMT   73 (103)
T ss_dssp             SCCCSCCEECCEECCTTSSSBCCEEETTT------------TEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCC
T ss_pred             CCCCceEEEEEEEeCCCccCEEEEeeccC------------CCCEEEEEEcCCChHHhcCCCCCCCEEEEECCEECCCCc
Confidence            34456678899999999999999987542            2235899999999999999 9999999999999999999


Q ss_pred             HHHHHHHHHhCCCeEEEEEEecC
Q psy2827          82 HKQVVELIKSGGDVLSLTVISVS  104 (373)
Q Consensus        82 ~~~~~~~i~~~g~~v~l~V~r~~  104 (373)
                      +.++.++|++++..++|+|.|..
T Consensus        74 ~~ev~~~l~~~~~~v~l~v~R~~   96 (103)
T d1wfva_          74 HARAIELIKSGGRRVRLLLKRGT   96 (103)
T ss_dssp             HHHHHHHHHHHCSEECEEEECTT
T ss_pred             HHHHHHHHHcCCCEEEEEEEECC
Confidence            99999999998889999998753

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=6.4e-13  Score=108.97  Aligned_cols=87  Identities=32%  Similarity=0.461  Sum_probs=73.5

Q ss_pred             CCCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHH
Q psy2827           5 QQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHK   83 (373)
Q Consensus         5 ~~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~   83 (373)
                      .....++|+|.|++ .+|||+|.|+.+.+            .+++|..|.+++||+++||++||+|++|||+.+.+++++
T Consensus        17 ~~~~~~~v~l~~~~~~~lGf~i~gg~~~~------------~gv~V~~V~~g~~A~~~gL~~GD~Il~INg~~v~~~s~~   84 (128)
T d1uf1a_          17 QGGDEKKVNLVLGDGRSLGLTIRGGAEYG------------LGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHD   84 (128)
T ss_dssp             CCSSEEEEEEECCSSCCCCEEEECCTTTT------------CCCEEEEECTTCHHHHHTCCTTCEEEEETTEECSSCCHH
T ss_pred             CCCCeEEEEEEECCCCccCEEEEeeccCC------------CCEEEEEECCCChHHhcCCCCCCEEEEECCEECCCCCHH
Confidence            44567899999986 57999999875421            234899999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCeEEEEEEecC
Q psy2827          84 QVVELIKSGGDVLSLTVISVS  104 (373)
Q Consensus        84 ~~~~~i~~~g~~v~l~V~r~~  104 (373)
                      +++++|+++ ..+.++|.+..
T Consensus        85 evv~~lr~~-~~v~l~v~~~~  104 (128)
T d1uf1a_          85 EAVRLLKSS-RHLILTVKDVG  104 (128)
T ss_dssp             HHHHHHTTC-SEEEEEEECCS
T ss_pred             HHHHHHhcC-CcEEEEEEECC
Confidence            999999875 46888887643

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=7.4e-14  Score=111.86  Aligned_cols=95  Identities=32%  Similarity=0.426  Sum_probs=77.1

Q ss_pred             CCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHH
Q psy2827           6 QTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHK   83 (373)
Q Consensus         6 ~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~   83 (373)
                      .+..++|+|.|.+ .+|||+|.++......   .......++++|..|.++|||+++| |++||+|++|||+++.+++++
T Consensus         7 g~~~~~V~l~k~~~~~lG~~i~gG~~~~~~---~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~t~~   83 (111)
T d1ujua_           7 GPGLRELCIQKAPGERLGISIRGGARGHAG---NPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHG   83 (111)
T ss_dssp             SCSSSCEEEECCTTCCCCEEEECCSSSSCS---CSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHH
T ss_pred             CCCeEEEEEEeCCCCccCEEEeccccCCcc---cccccCCCCEEEEEECCCChHHHcCCCccceeeeeeCCcccCCCCHH
Confidence            3445889999996 5899999987432110   0112234567899999999999999 999999999999999999999


Q ss_pred             HHHHHHHhCCCeEEEEEEec
Q psy2827          84 QVVELIKSGGDVLSLTVISV  103 (373)
Q Consensus        84 ~~~~~i~~~g~~v~l~V~r~  103 (373)
                      +++++|++++..++|+|.|.
T Consensus        84 ea~~~lk~~~~~v~L~V~r~  103 (111)
T d1ujua_          84 EAVQLLRSVGDTLTVLVCDG  103 (111)
T ss_dssp             HHHHHHSSCSSEEEECCCCC
T ss_pred             HHHHHHHcCCCeEEEEEEEC
Confidence            99999999888999988764

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.4e-13  Score=108.73  Aligned_cols=85  Identities=29%  Similarity=0.558  Sum_probs=72.0

Q ss_pred             CcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHH
Q psy2827           8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVV   86 (373)
Q Consensus         8 ~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~   86 (373)
                      ...+|+|.|+..+|||+|.++.+..            ..++|..|.+++||+++| |++||+|++|||+++.++++++++
T Consensus         9 ~~~~V~l~k~~~glG~~i~gg~~~~------------~~i~V~~v~~g~~A~~~G~L~~GD~Il~VNg~~v~~~t~~e~~   76 (103)
T d1uepa_           9 KELDVHLRRMESGFGFRILGGDEPG------------QPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVI   76 (103)
T ss_dssp             EEECCEEESSSSSCCEEECCCCSTT------------SCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHH
T ss_pred             EEEEEEEEeCCceEeEEEEecccCC------------CcEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHH
Confidence            3456888999999999999864321            224799999999999999 999999999999999999999999


Q ss_pred             HHHHhC--CCeEEEEEEecC
Q psy2827          87 ELIKSG--GDVLSLTVISVS  104 (373)
Q Consensus        87 ~~i~~~--g~~v~l~V~r~~  104 (373)
                      ++|+++  +..++|+|.|..
T Consensus        77 ~~l~~~~~~~~v~l~v~r~~   96 (103)
T d1uepa_          77 DLMHHAARNGQVNLTVRRKV   96 (103)
T ss_dssp             HHHHHHHHHTEEEEEEEEEC
T ss_pred             HHHHhCCCCCEEEEEEEeCC
Confidence            999973  567899888743

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=2.9e-13  Score=107.10  Aligned_cols=89  Identities=26%  Similarity=0.382  Sum_probs=74.4

Q ss_pred             CcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHH
Q psy2827           8 GPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVV   86 (373)
Q Consensus         8 ~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~   86 (373)
                      .+++|+|.|++ .+|||++.++.+...      +.....+++|.+|.+||||+ ++|++||+|++|||+++.+++++++.
T Consensus         7 e~~tV~l~k~~~~~~G~~i~gg~~~~~------~~~~~~~i~V~~v~~gs~A~-~~L~~GD~Il~INg~~v~~~~~~ev~   79 (104)
T d2csja1           7 EQYTVTLQKDSKRGFGIAVSGGRDNPH------FENGETSIVISDVLPGGPAD-GLLQENDRVVMVNGTPMEDVLHSFAV   79 (104)
T ss_dssp             EEEEEEEECCSSSTTCEEEECCSSCCC------CSSCCCBCEEEEECTTSSHH-HHBCTTCEEEEESSCBCBTCCHHHHH
T ss_pred             ccEEEEEEeCCCCCcCEEEEcccCCCc------cccCCCCEEEEEECCCChhh-cCCCCCCEEEEECCEECCCCCHHHHH
Confidence            36889999986 579999998754311      11123456899999999997 78999999999999999999999999


Q ss_pred             HHHHhCCCeEEEEEEec
Q psy2827          87 ELIKSGGDVLSLTVISV  103 (373)
Q Consensus        87 ~~i~~~g~~v~l~V~r~  103 (373)
                      +++++++..+.++|.|.
T Consensus        80 ~ll~~~~~~v~l~V~R~   96 (104)
T d2csja1          80 QQLRKSGKIAAIVVKRP   96 (104)
T ss_dssp             HHHHHSCSEEEEEEEEE
T ss_pred             HHHHcCCCEEEEEEEeC
Confidence            99999888999999874

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=8.3e-13  Score=106.63  Aligned_cols=89  Identities=18%  Similarity=0.404  Sum_probs=77.1

Q ss_pred             CCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHH
Q psy2827           6 QTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHK   83 (373)
Q Consensus         6 ~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~   83 (373)
                      ...|+.|+|.|.+ .+|||+|.++...           ..++++|..|.++++|+++| |++||+|++|||+++.+++++
T Consensus        13 ~~~p~~V~l~k~~~~~lGi~i~~~~~~-----------~~~gi~V~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~   81 (117)
T d1v62a_          13 ASGPLMVEIVKTPGSALGISLTTTSLR-----------NKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLL   81 (117)
T ss_dssp             SSSSEEEEEECCTTCCCCCEEEEECCS-----------SSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHH
T ss_pred             CCCCEEEEEEcCCCCCcCEEEEeeccC-----------CCCCEEEEEECCCCHHHHcCCCChhheeeeECCEecCCCCHH
Confidence            4578999999986 4799999986432           13567999999999999998 999999999999999999999


Q ss_pred             HHHHHHHhCCCeEEEEEEecCc
Q psy2827          84 QVVELIKSGGDVLSLTVISVSP  105 (373)
Q Consensus        84 ~~~~~i~~~g~~v~l~V~r~~~  105 (373)
                      ++.++|++++..++|+|.+..+
T Consensus        82 ~v~~~l~~~~~~v~l~v~~~~~  103 (117)
T d1v62a_          82 EATKLLASISEKVRLEILPVPQ  103 (117)
T ss_dssp             HHHHHHHSCSSEEEEEECCBTT
T ss_pred             HHHHHHHcCCCcEEEEEEECCC
Confidence            9999999988999999876543

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3.7e-13  Score=105.87  Aligned_cols=87  Identities=24%  Similarity=0.469  Sum_probs=72.9

Q ss_pred             CCCCCCcEEEEEEcC-CCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCC
Q psy2827           3 STQQTGPREVQIAKS-DTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGAT   81 (373)
Q Consensus         3 ~~~~~~~r~v~l~r~-~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s   81 (373)
                      .....+++.|.+.+. +.+|||+|.++.+.            .++++|..|.++|||+++||++||+|++|||+++.+++
T Consensus         3 ~~~~~~~~~v~i~~~~~~glG~~i~~g~~~------------~~gi~V~~V~~gs~A~~~gL~~GD~Il~VNg~~v~~~~   70 (101)
T d1x5na1           3 GNRENKEKKVFISLVGSRGLGCSISSGPIQ------------KPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLD   70 (101)
T ss_dssp             CCCCCSSEEEEECCCSSCCCCEEEEECCSS------------SCSEEEEEECTTSTTTTTTCCTTCEEEEETTEETTSCC
T ss_pred             CCcCCccEEEEEEeeCCCcccEEEeccCCC------------CCCEEEEEECCCChHHhCCCCcccEEEEECCEECCCCC
Confidence            345567899999874 57899999987432            45679999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCeEEEEEEe
Q psy2827          82 HKQVVELIKSGGDVLSLTVIS  102 (373)
Q Consensus        82 ~~~~~~~i~~~g~~v~l~V~r  102 (373)
                      ++++.++++.++. +++++.+
T Consensus        71 ~~~v~~~lk~~~~-~~l~v~~   90 (101)
T d1x5na1          71 HKEAVNVLKSSRS-LTISIVA   90 (101)
T ss_dssp             TTHHHHHHHHCSS-EEEEECS
T ss_pred             HHHHHHHHhCCCC-EEEEEEE
Confidence            9999999998654 6666654

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=6.3e-13  Score=103.55  Aligned_cols=85  Identities=22%  Similarity=0.500  Sum_probs=69.1

Q ss_pred             CCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHH
Q psy2827           7 TGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQV   85 (373)
Q Consensus         7 ~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~   85 (373)
                      ...+++++.+. .||||+|.++.+.+          ..++++|..|.+||||+++| |++||+|++|||+++.+++++++
T Consensus         7 ~~~~~v~~~~~-~glG~~i~gg~~~~----------~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ea   75 (96)
T d1wi4a1           7 PAFRVITVTKE-TGLGLKILGGINRN----------EGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEA   75 (96)
T ss_dssp             TTEEEEEECCS-SCCCEEEEECSSSS----------SCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHH
T ss_pred             CcEEEEEecCC-CccCEEEEeccCCC----------CCCCEEEEEEeCCCccccCCCCCCCCEEEEECCEECCCCCHHHH
Confidence            34466777665 57999999874321          13456899999999999999 99999999999999999999999


Q ss_pred             HHHHHhC----CCeEEEEEEe
Q psy2827          86 VELIKSG----GDVLSLTVIS  102 (373)
Q Consensus        86 ~~~i~~~----g~~v~l~V~r  102 (373)
                      +++++++    +.++.+++.|
T Consensus        76 ~~~l~~~~~~~~~~vel~~~R   96 (96)
T d1wi4a1          76 KSIITRAKLRSESPWEIAFIR   96 (96)
T ss_dssp             HHHHHHSCCSSSSCEEEEEEC
T ss_pred             HHHHHhccCCCCCeEEEEEEC
Confidence            9999973    4667777654

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.42  E-value=5.7e-13  Score=102.97  Aligned_cols=83  Identities=27%  Similarity=0.448  Sum_probs=70.2

Q ss_pred             EEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHH
Q psy2827          10 REVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVE   87 (373)
Q Consensus        10 r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~~   87 (373)
                      .+|+|.|+. .+|||++.|+...++          .++++|..|.|+|||+++| |++||+|++|||+++.+++++++.+
T Consensus         3 ~tV~l~k~~~~~lGi~i~gg~~~~~----------~~~i~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~l~~~s~~eav~   72 (92)
T d2f0aa1           3 ITVTLNMEKYNFLGISIVGQSNERG----------DGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVR   72 (92)
T ss_dssp             EEEEECHHHHCSCCEEEECCCCTTS----------CCCEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHH
T ss_pred             EEEEEEeCCCCccCEEEEccCCCCC----------CCCEEEEEECCCCcHHHcCCCCCccEEEEECCEECCCCCHHHHHH
Confidence            578999875 689999998754221          2456899999999999999 9999999999999999999999999


Q ss_pred             HHHh---CCCeEEEEEEe
Q psy2827          88 LIKS---GGDVLSLTVIS  102 (373)
Q Consensus        88 ~i~~---~g~~v~l~V~r  102 (373)
                      ++++   ....++|+|.|
T Consensus        73 llk~~~~~~~~v~L~V~R   90 (92)
T d2f0aa1          73 VLRDIVHKPGPIVLTVAK   90 (92)
T ss_dssp             HHHHHHHSSSCEEEEEEC
T ss_pred             HHHhccCCCCcEEEEEEe
Confidence            9986   34578888876

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=6e-13  Score=104.25  Aligned_cols=86  Identities=20%  Similarity=0.442  Sum_probs=73.2

Q ss_pred             CCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHH
Q psy2827           7 TGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQ   84 (373)
Q Consensus         7 ~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~   84 (373)
                      +..++|++.|.+ .+|||++.++.+..          ..++++|..|.++|||+++| |++||+|++|||+++.++++++
T Consensus         9 ~~~~~V~l~k~~~~~lG~~v~~~~~~~----------~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e   78 (99)
T d1p1da2           9 SGTFHVKLPKKHSVELGITISSPSSRK----------PGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMED   78 (99)
T ss_dssp             SSCEEEEECCCSSCCCCCEEECSCSSS----------TTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHH
T ss_pred             CCcEEEEEEECCCCccCEEEEecCCCC----------CCCCEEEEEEcCCchhhhcCCCCCCCEEEeeCCEECCCCCHHH
Confidence            355889999865 68999998764321          12346899999999999999 9999999999999999999999


Q ss_pred             HHHHHHhCCCeEEEEEEe
Q psy2827          85 VVELIKSGGDVLSLTVIS  102 (373)
Q Consensus        85 ~~~~i~~~g~~v~l~V~r  102 (373)
                      +.+++++++..++|+|.|
T Consensus        79 ~~~ll~~~~~~v~L~V~r   96 (99)
T d1p1da2          79 AVQILQQCEDLVKLKIRK   96 (99)
T ss_dssp             HHHHHHHCTTCEEEEEEC
T ss_pred             HHHHHHcCCCeEEEEEEe
Confidence            999999988889999976

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.1e-12  Score=103.45  Aligned_cols=91  Identities=23%  Similarity=0.352  Sum_probs=71.4

Q ss_pred             CcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHH
Q psy2827           8 GPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVV   86 (373)
Q Consensus         8 ~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~   86 (373)
                      .++++++.+.. .+|||+|.|+.+.....    .....++++|..|.++|||+++ |++||+|++|||+++.+++|++++
T Consensus         9 ~~~~v~v~~~~~~~lGf~I~Gg~~~~~~~----~~~~~~gI~I~~V~~gs~A~~~-L~~GD~Il~VNg~~v~~~t~~eav   83 (103)
T d2h3la1           9 AKQEIRVRVEKDPELGFSISGGVGGRGNP----FRPDDDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQAV   83 (103)
T ss_dssp             EEEEEEEEEECSSSCSEEEEETTTTCCCS----SSTTCCSEEEEEECTTSTTTTT-CCTTCEEEEETTEECSSCCHHHHH
T ss_pred             ccEEEEEEEccCCCCCEEEeeecCCCCCc----cccCCCCEEEEEeCCCChHHhc-cCCCCEEEEECCEECCCCCHHHHH
Confidence            34555555333 47999999985432110    1112356799999999999865 999999999999999999999999


Q ss_pred             HHHHhCCCeEEEEEEec
Q psy2827          87 ELIKSGGDVLSLTVISV  103 (373)
Q Consensus        87 ~~i~~~g~~v~l~V~r~  103 (373)
                      +++++++..++|+|.|.
T Consensus        84 ~~l~~~~~~v~L~V~R~  100 (103)
T d2h3la1          84 SLLKTFQNTVELIIVRE  100 (103)
T ss_dssp             HHHHHCCSEEEEEEEEE
T ss_pred             HHHHhCCCeEEEEEEEE
Confidence            99999889999999874

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=3.1e-12  Score=104.09  Aligned_cols=87  Identities=32%  Similarity=0.498  Sum_probs=74.2

Q ss_pred             CcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHH
Q psy2827           8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVV   86 (373)
Q Consensus         8 ~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~   86 (373)
                      ...+++|.|+..+|||++.++.+.            ...++|..|.++++|+++| |++||+|++|||+++.++++++++
T Consensus        19 ~~~~v~l~k~~~glG~~i~gg~~~------------~~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~t~~eav   86 (123)
T d1ueqa_          19 TFLSTTLKKSNMGFGFTIIGGDEP------------DEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVV   86 (123)
T ss_dssp             EEEEEEEECCTTSCSEEEECCSSS------------SCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHH
T ss_pred             eEEEEEEEECCCeeCEEEEeecCC------------CCCEEEEEECCCCHHHHcCCCeeCCEEEEECCEECCCCCHHHHH
Confidence            445788889999999999986432            1235899999999999999 999999999999999999999999


Q ss_pred             HHHHhC--CCeEEEEEEecCcc
Q psy2827          87 ELIKSG--GDVLSLTVISVSPE  106 (373)
Q Consensus        87 ~~i~~~--g~~v~l~V~r~~~~  106 (373)
                      ++|++.  +..+.|+|.|..+.
T Consensus        87 ~~l~~~~~g~~v~L~v~R~~~~  108 (123)
T d1ueqa_          87 KLFQSVPIGQSVNLVLCRGYPL  108 (123)
T ss_dssp             HHHHTSCTTCEEEEEEEESCCC
T ss_pred             HHHHcCCCCCEEEEEEEcCCCC
Confidence            999983  68899999885443

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=1e-12  Score=105.07  Aligned_cols=80  Identities=33%  Similarity=0.501  Sum_probs=66.8

Q ss_pred             cEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHH
Q psy2827           9 PREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVV   86 (373)
Q Consensus         9 ~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~   86 (373)
                      ..+|+|.|++ .||||++.++.+             .++++|..|.+||||+++| |++||+|++|||+.+.+++++++.
T Consensus         2 i~~V~l~k~~~~glG~~i~~~~~-------------~~~i~I~~v~~ggpA~~~G~L~~GD~Il~INg~~v~~~s~~e~~   68 (112)
T d1qaua_           2 VISVRLFKRKVGGLGFLVKERVS-------------KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSAL   68 (112)
T ss_dssp             EEEEEEECBTTTBTSEEEEECSS-------------SSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHH
T ss_pred             eEEEEEEECCCCcEeEEEEeecC-------------CCCEEEEEEcCCCHHHHhhhcccccEeEEECCcCccCCCHHHHH
Confidence            3679999876 689999998643             2456899999999999999 999999999999999999999999


Q ss_pred             HHHHhCCCeEEEEEE
Q psy2827          87 ELIKSGGDVLSLTVI  101 (373)
Q Consensus        87 ~~i~~~g~~v~l~V~  101 (373)
                      ++++.++....+++.
T Consensus        69 ~~l~~~~~~~~~~l~   83 (112)
T d1qaua_          69 EVLRGIASETHVVLI   83 (112)
T ss_dssp             HHHHHSCSSSEEEEE
T ss_pred             HHHHcCCCCcEEEEE
Confidence            999985444444443

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=3.4e-13  Score=110.99  Aligned_cols=88  Identities=20%  Similarity=0.336  Sum_probs=74.1

Q ss_pred             cEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHH
Q psy2827           9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVE   87 (373)
Q Consensus         9 ~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~~   87 (373)
                      .++|+|.|++.+|||+|.|+.+...         ...+++|..|.+||||+++| |++||+|++|||+.+.+++++++++
T Consensus        30 ~~~V~l~k~~~glG~~i~gg~~~~~---------~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~~~~~t~~eav~  100 (130)
T d1i16a_          30 VCTVTLEKMSAGLGFSLEGGKGSLH---------GDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWN  100 (130)
T ss_dssp             EEEEEEETTSSSTTEEEECCCCCSS---------SCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHH
T ss_pred             EEEEEEEeCCCccCEEEeeccCCCC---------CCCCEEEEEECCCChHHhcCCcccCceeeeECCeecCCCcHHHHHH
Confidence            4678899999999999998754211         12345899999999999999 9999999999999999999999999


Q ss_pred             HHHhC-CCeEEEEEEecCc
Q psy2827          88 LIKSG-GDVLSLTVISVSP  105 (373)
Q Consensus        88 ~i~~~-g~~v~l~V~r~~~  105 (373)
                      +|+.. ...+.|+|.|...
T Consensus       101 ~l~~~~~~~v~l~v~r~~~  119 (130)
T d1i16a_         101 IIKALPDGPVTIVIRRKSL  119 (130)
T ss_dssp             HHHTSCSSEEEEEEEEESS
T ss_pred             HHHcCCCCeEEEEEEcCCC
Confidence            99984 5589999987544

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=3.3e-13  Score=106.15  Aligned_cols=88  Identities=35%  Similarity=0.499  Sum_probs=73.1

Q ss_pred             CCCCCCcEEEEEEcCC--CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCC
Q psy2827           3 STQQTGPREVQIAKSD--TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGA   80 (373)
Q Consensus         3 ~~~~~~~r~v~l~r~~--~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~   80 (373)
                      +......+.|+|.|.+  .+|||+|.++.+.            ..+++|..|.+++||+++||++||+|++|||+++.++
T Consensus         3 s~s~~~~~~v~l~r~~~~~glG~~i~gg~~~------------~~~i~V~~v~~gg~A~~~gL~~GD~Il~ING~~v~~~   70 (101)
T d1ueza_           3 SGSSGEVRLVSLRRAKAHEGLGFSIRGGSEH------------GVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARV   70 (101)
T ss_dssp             CCCSCCCEEECCCCCCTTTCSSEEEEECTTT------------TCCEEEEEECTTSHHHHHTCCSSCCEEEETTEECSSC
T ss_pred             CCCCCCEEEEEEEECCCCCeeCEEEEecccC------------CCCEEEEEECCCChHHhcCCCCCcEEEEECCEECCCC
Confidence            3455678999999875  5799999987442            2345899999999999999999999999999999999


Q ss_pred             CHHHHHHHHHhCCCeEEEEEEec
Q psy2827          81 THKQVVELIKSGGDVLSLTVISV  103 (373)
Q Consensus        81 s~~~~~~~i~~~g~~v~l~V~r~  103 (373)
                      ++++++++++..++ +.++|.+.
T Consensus        71 ~~~~v~~ll~~~~~-~~l~V~~~   92 (101)
T d1ueza_          71 THAEAVKALKGSKK-LVLSVYSA   92 (101)
T ss_dssp             CHHHHHHHSSSSSS-CCEEECCC
T ss_pred             CHHHHHHHHhcCCC-EEEEEEEC
Confidence            99999999988654 66777653

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=8.3e-13  Score=104.19  Aligned_cols=83  Identities=25%  Similarity=0.420  Sum_probs=70.3

Q ss_pred             EEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHH
Q psy2827          10 REVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELI   89 (373)
Q Consensus        10 r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i   89 (373)
                      .+|++ .++.+|||+|.++.+..            ..++|..+.+++||++++|++||+|++|||+++.++++++++++|
T Consensus         7 ~~v~~-~g~~g~Gf~i~gg~d~~------------~~v~V~~v~~g~~a~~~~L~~GD~Il~INg~~v~~~t~~eav~li   73 (103)
T d1wf7a_           7 GSVSL-VGPAPWGFRLQGGKDFN------------MPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKI   73 (103)
T ss_dssp             EEEEE-ESSSCCSCCEEEETTTT------------EEEEECCCCTTCHHHHTTCCTTCBEEEETTEECSSCCHHHHHHHH
T ss_pred             eEEEE-ECCCCccEEEEcccCCC------------CCEEEEecCCCChHHHCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            34555 45579999999885421            235799999999999999999999999999999999999999999


Q ss_pred             HhCCCeEEEEEEecCc
Q psy2827          90 KSGGDVLSLTVISVSP  105 (373)
Q Consensus        90 ~~~g~~v~l~V~r~~~  105 (373)
                      ++++..+.|+|.|...
T Consensus        74 ~~~~~~v~L~v~R~~~   89 (103)
T d1wf7a_          74 KACTGSLNMTLQRASA   89 (103)
T ss_dssp             HHCSSEEEEEECCCSC
T ss_pred             HcCCCeEEEEEEECCC
Confidence            9999999999987543

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3e-12  Score=97.36  Aligned_cols=80  Identities=24%  Similarity=0.368  Sum_probs=65.3

Q ss_pred             EEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHH
Q psy2827          11 EVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVEL   88 (373)
Q Consensus        11 ~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~~~   88 (373)
                      .|+|.|.+ .+|||++.++..          ....|+++|..|.|+|||+++| |++||+|++|||+++.+++++++.++
T Consensus         1 eV~l~k~~g~~LGi~i~~~~~----------~~~~~~i~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~s~~e~~~~   70 (85)
T d1x45a1           1 DVFIEKQKGEILGVVIVESGW----------GSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSI   70 (85)
T ss_dssp             EEEEECCTTSCCCEEEECCTT----------TSSSCCCEEEEECTTCHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             CeEEEeCCCCccCEEEEeCCC----------CCCCCCEEEEEeCCCCHHHHcCCCCcCCEEEEECCEECCCCCHHHHHHH
Confidence            37888876 589999975421          1123556999999999999999 99999999999999999999999999


Q ss_pred             HHhC--CCeEEEEE
Q psy2827          89 IKSG--GDVLSLTV  100 (373)
Q Consensus        89 i~~~--g~~v~l~V  100 (373)
                      ++++  ...++++|
T Consensus        71 l~~~~~~~~v~L~V   84 (85)
T d1x45a1          71 IKGLKNQSRVKLNI   84 (85)
T ss_dssp             HHTTTTCSEEEEEE
T ss_pred             HHcCCCCCEEEEEE
Confidence            9985  34566655

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.4e-12  Score=103.61  Aligned_cols=87  Identities=23%  Similarity=0.496  Sum_probs=71.2

Q ss_pred             CCCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCH
Q psy2827           5 QQTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATH   82 (373)
Q Consensus         5 ~~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~   82 (373)
                      .-...+.+++.|.. .+|||+|.++.+.+           .++++|..|.+||||+++| |++||+|++|||+.+.++++
T Consensus         5 ~~~~~~~v~l~k~~~~~lG~~i~gg~~~~-----------~~~i~V~~v~~gs~A~~~g~L~~GD~Il~VNg~~v~~~~~   73 (107)
T d1x6da1           5 QLDGIHVTILHKEEGAGLGFSLAGGADLE-----------NKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTH   73 (107)
T ss_dssp             SCTTEEEEEEECCTTSCCSEEEECCSSSS-----------CSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCH
T ss_pred             ccCCcEEEEEEcCCCCccCEEEeeccCCC-----------CCCEEEEEECCCCHHHHcCCCCcCCEEEEECCEecCCCCH
Confidence            34567889999875 57999999874321           2345899999999999998 99999999999999999999


Q ss_pred             HHHHHHHHhCCCeEEEEEEe
Q psy2827          83 KQVVELIKSGGDVLSLTVIS  102 (373)
Q Consensus        83 ~~~~~~i~~~g~~v~l~V~r  102 (373)
                      +++.++|++++..+.+++.+
T Consensus        74 ~ea~~~l~~~~~~~~l~v~~   93 (107)
T d1x6da1          74 HDALAILRQAREPRQAVIVT   93 (107)
T ss_dssp             HHHHHHHHHTTSSSEEEEEE
T ss_pred             HHHHHHHHcCCCCEEEEEEE
Confidence            99999999865555555544

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=2.9e-12  Score=100.43  Aligned_cols=79  Identities=29%  Similarity=0.543  Sum_probs=69.9

Q ss_pred             CcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHH
Q psy2827           8 GPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQV   85 (373)
Q Consensus         8 ~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~   85 (373)
                      ..++|++.|+. .+|||+++++.               .+++|..|.+||+|+++| |++||+|++|||+++.+++++++
T Consensus        18 ~i~~V~l~k~~~~~lG~~v~~~~---------------~~i~I~~V~~gs~A~~~g~l~~GD~Il~VNg~~v~~~~~~~~   82 (100)
T d1va8a1          18 TVKIVRIEKARDIPLGATVRNEM---------------DSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEV   82 (100)
T ss_dssp             ECEEEEEEECTTCCCCEEEEECS---------------SSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHH
T ss_pred             eEEEEEEEeCCCCCccEEEEecC---------------CCEEEEEECCCChhhhhcccCccCEEEEECCEEEcCCCHHHH
Confidence            45789999886 47999998752               235899999999999999 99999999999999999999999


Q ss_pred             HHHHHhCCCeEEEEEE
Q psy2827          86 VELIKSGGDVLSLTVI  101 (373)
Q Consensus        86 ~~~i~~~g~~v~l~V~  101 (373)
                      .+++++++..++|+|.
T Consensus        83 ~~ll~~~~~~v~L~v~   98 (100)
T d1va8a1          83 FDLLSDMHGTLTFVLI   98 (100)
T ss_dssp             HHHHHHCCEEEEEEEE
T ss_pred             HHHHHcCCCeEEEEEE
Confidence            9999998788888875

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.6e-12  Score=100.54  Aligned_cols=88  Identities=24%  Similarity=0.427  Sum_probs=70.5

Q ss_pred             CCCcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHH
Q psy2827           6 QTGPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHK   83 (373)
Q Consensus         6 ~~~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~   83 (373)
                      +...++|++.|++ .+|||+++|+......        ...+++|..+.++|||+++| |++||+|++|||+++.+++++
T Consensus         6 ~~e~~~V~l~~~~~~~lG~~i~gg~~~~~~--------~~~~~~V~~i~~~s~A~~~G~l~~GD~Il~INg~~v~~~t~~   77 (99)
T d1x5ra1           6 HTETTEVVLCGDPLSGFGLQLQGGIFATET--------LSSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTME   77 (99)
T ss_dssp             SSEEEEEEECCCTTTCCCEEEECCSCSSSB--------CSSCCEEEEECTTSHHHHTSSCCTTCBCSEETTEESTTSBHH
T ss_pred             eeeeEEEEEEcCCCCCcCEEEEEeccCCCC--------CCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHH
Confidence            3455679999887 5799999987432111        12345899999999999999 999999999999999999999


Q ss_pred             HHHHHHHh--CCCeEEEEEE
Q psy2827          84 QVVELIKS--GGDVLSLTVI  101 (373)
Q Consensus        84 ~~~~~i~~--~g~~v~l~V~  101 (373)
                      ++.+++++  ....+.+++.
T Consensus        78 e~~~~lr~~~~~~~l~l~v~   97 (99)
T d1x5ra1          78 EANQLLRDAALAHKVVLEVE   97 (99)
T ss_dssp             HHHHHHHHHHTTTCEEEEEE
T ss_pred             HHHHHHHhCCCCCEEEEEEE
Confidence            99999997  4566666664

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=3.3e-12  Score=102.99  Aligned_cols=89  Identities=20%  Similarity=0.330  Sum_probs=73.1

Q ss_pred             CcEEEEEEcCC-------CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCC
Q psy2827           8 GPREVQIAKSD-------TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEG   79 (373)
Q Consensus         8 ~~r~v~l~r~~-------~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~   79 (373)
                      +.+.+.+.|+.       .+|||+|.++.+.+..       ....+++|..|.++|||+++| |++||+|++|||+++.+
T Consensus        12 p~~~v~l~r~~~~~~~~g~glG~~i~gg~~~~~~-------~~~~gi~I~~V~~gs~A~~~G~L~~GD~Il~INg~~v~~   84 (117)
T d1ujda_          12 PHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGH-------SGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTS   84 (117)
T ss_dssp             CEEEEEECCCSSSSCSSCCSCSEEEEEEEECSSS-------SSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTT
T ss_pred             CceeEEEEecccccccCCcccCEEEeccccCCCC-------CCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCC
Confidence            34678888774       4699999987543211       112346899999999999999 99999999999999999


Q ss_pred             CCHHHHHHHHHhCCCeEEEEEEec
Q psy2827          80 ATHKQVVELIKSGGDVLSLTVISV  103 (373)
Q Consensus        80 ~s~~~~~~~i~~~g~~v~l~V~r~  103 (373)
                      +++++++++|++++..++|+|.|.
T Consensus        85 ~s~~e~~~~i~~~~~~v~l~v~r~  108 (117)
T d1ujda_          85 KTYEEVQSIISQQSGEAEICVRLD  108 (117)
T ss_dssp             CCHHHHHHHHSCCSSCEEEEEESS
T ss_pred             CcHHHHHHHHHcCCCeEEEEEEEC
Confidence            999999999999878899999764

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.31  E-value=1e-12  Score=103.57  Aligned_cols=77  Identities=23%  Similarity=0.365  Sum_probs=67.7

Q ss_pred             cCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCe
Q psy2827          16 KSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDV   95 (373)
Q Consensus        16 r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~~g~~   95 (373)
                      +++.+|||+|.++.+..            .+++|..|.+++||++++|++||+|++|||+.+.++++++++++++.+++.
T Consensus        12 ~g~~~~Gf~l~gg~d~~------------~~i~V~~v~~g~~A~~~~L~~GD~Il~VNg~~v~~~~~~e~v~ll~~~~~~   79 (103)
T d1v5la_          12 PGPAPWGFRLSGGIDFN------------QPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQ   79 (103)
T ss_dssp             ESSSCCSBCCEEETTTT------------EEEECSCBCTTSTTGGGTCCTTCBEEEETTEECSSCCHHHHHHHHTTCCSE
T ss_pred             ECCCCCCEEEEeecCCC------------CCEEEEEccCCChHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCE
Confidence            66788999999875421            235899999999999999999999999999999999999999999998899


Q ss_pred             EEEEEEecC
Q psy2827          96 LSLTVISVS  104 (373)
Q Consensus        96 v~l~V~r~~  104 (373)
                      +.|+|.|..
T Consensus        80 v~l~V~R~~   88 (103)
T d1v5la_          80 LCLKIDRAE   88 (103)
T ss_dssp             EECEECCCT
T ss_pred             EEEEEEECC
Confidence            999998743

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=3.8e-12  Score=100.28  Aligned_cols=82  Identities=26%  Similarity=0.524  Sum_probs=68.7

Q ss_pred             cEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHH
Q psy2827           9 PREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVE   87 (373)
Q Consensus         9 ~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~~   87 (373)
                      ...|++.|+..+|||+|.++.+.+           .|.++|..|.+++||+++| |++||+|++|||+++.+++++++++
T Consensus         7 ~~vv~~~k~~~~lG~~i~gg~~~~-----------~~~~~I~~i~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~   75 (103)
T d1ufxa_           7 GTLVRVKKSAATLGIAIEGGANTR-----------QPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAAR   75 (103)
T ss_dssp             SEEEEEECCSSSCCEEEECBTTSS-----------CSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHH
T ss_pred             CEEEEEEeCCCccCEEEeeecCCC-----------CCCEEEEEEcCCcchhhcCCCCCCCEEEEECCEECCCCcHHHHHH
Confidence            466888898899999999875432           3446899999999999999 9999999999999999999999999


Q ss_pred             HHHhC-----CCeEEEEEE
Q psy2827          88 LIKSG-----GDVLSLTVI  101 (373)
Q Consensus        88 ~i~~~-----g~~v~l~V~  101 (373)
                      +|+++     ...+++.+.
T Consensus        76 ~l~~a~~~~~~~~~~l~v~   94 (103)
T d1ufxa_          76 IIAEAFKTKDRDYIDFLVT   94 (103)
T ss_dssp             HHHHHHHCSSCSEEEEEEC
T ss_pred             HHHHccCCCccceEEEEEe
Confidence            99973     245666554

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=4e-12  Score=103.75  Aligned_cols=81  Identities=25%  Similarity=0.450  Sum_probs=72.5

Q ss_pred             CcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHH
Q psy2827           8 GPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVV   86 (373)
Q Consensus         8 ~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~   86 (373)
                      ...++++.++..||||++...               .++++|..|.++|||+++| |++||+|++|||+++.++++++++
T Consensus        27 ~~~~v~l~~g~~GlG~~i~~~---------------~~~i~V~~v~~gg~A~~~G~l~~GD~Il~Ing~~v~~~~~~e~~   91 (126)
T d1wifa_          27 KVIQTKLTVGNLGLGLVVIQN---------------GPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFL   91 (126)
T ss_dssp             CEEEEEEECCTTCCCCCEEEE---------------TTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHH
T ss_pred             cEEEEEEeeCCCcEEEEEEec---------------CCcEEEEEECCCChHHHcCCCCCCCEEEEECCEEeEeccHHHHH
Confidence            456788899999999999875               2456899999999999999 999999999999999999999999


Q ss_pred             HHHHh--CCCeEEEEEEec
Q psy2827          87 ELIKS--GGDVLSLTVISV  103 (373)
Q Consensus        87 ~~i~~--~g~~v~l~V~r~  103 (373)
                      ++|+.  .|..++|+|.|.
T Consensus        92 ~llr~~~~g~~v~L~v~R~  110 (126)
T d1wifa_          92 KLLQNITIGTVLQIKAYRG  110 (126)
T ss_dssp             HHHTSCCSSCEEEEEEESS
T ss_pred             HHHhCCCCCCEEEEEEEeC
Confidence            99998  378999999874

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=3.5e-12  Score=103.57  Aligned_cols=87  Identities=25%  Similarity=0.440  Sum_probs=68.4

Q ss_pred             CcEEEEEEcCC-CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHH
Q psy2827           8 GPREVQIAKSD-TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQV   85 (373)
Q Consensus         8 ~~r~v~l~r~~-~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~   85 (373)
                      ..+.|+|.|++ .+|||+|.++.....        ....+++|..|.+++||+++| |++||+|++|||+++.+++++++
T Consensus        15 ~~~ev~l~k~~~~glGf~i~gg~~~~~--------~~~~~i~V~~I~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~e~   86 (122)
T d1v5qa_          15 ETTEVVLTADPVTGFGIQLQGSVFATE--------TLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEA   86 (122)
T ss_dssp             EEEEEEECCCSSSSSCEEEECCSCCSS--------SCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHH
T ss_pred             eeEEEEEecCCCCccCEEEecccCCCc--------cCCCCeEEEEECCCCHHHHhCCCCcCCEEEEECCCcCCCCCHHHH
Confidence            44678888876 579999998754321        112335899999999999999 99999999999999999999999


Q ss_pred             HHHHHhCCC--eEEEEEEe
Q psy2827          86 VELIKSGGD--VLSLTVIS  102 (373)
Q Consensus        86 ~~~i~~~g~--~v~l~V~r  102 (373)
                      +++|++++.  .+.+++.+
T Consensus        87 ~~~lk~~~~~~~l~l~~~~  105 (122)
T d1v5qa_          87 NQLLRDSSITSKVTLEIEF  105 (122)
T ss_dssp             HHHHHHHTTTTCEEEEEEE
T ss_pred             HHHHHcCCCceEEEEEEec
Confidence            999998544  44444433

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=1.1e-11  Score=99.90  Aligned_cols=81  Identities=33%  Similarity=0.490  Sum_probs=68.2

Q ss_pred             EcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHh--
Q psy2827          15 AKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVELIKS--   91 (373)
Q Consensus        15 ~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~~~i~~--   91 (373)
                      .+...+|||+|.|+.+.+           ..+++|..|.++|||+++| |++||+|++|||+++.+++++++..++++  
T Consensus        24 ~~~~~~lG~~i~gg~d~~-----------~~~v~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~   92 (118)
T d1v6ba_          24 IKKEGSLDLALEGGVDSP-----------VGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAW   92 (118)
T ss_dssp             EESCSCCCCEEEEBTTSS-----------SCSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHH
T ss_pred             ecCCCCCCEEEEeeecCC-----------CCCEEEEEECCCChHHhcCCCCCCCEEeeECCEECCCCcHHHHHHHHHhcc
Confidence            344568999999885432           1245899999999999999 99999999999999999999999999985  


Q ss_pred             --CCCeEEEEEEecCcc
Q psy2827          92 --GGDVLSLTVISVSPE  106 (373)
Q Consensus        92 --~g~~v~l~V~r~~~~  106 (373)
                        .+..++|+|.+..|.
T Consensus        93 ~~~~~~V~L~v~r~pp~  109 (118)
T d1v6ba_          93 NQGGDWIDLVVAVCPPK  109 (118)
T ss_dssp             HHTCSEEEEEEECCCSC
T ss_pred             cCCCCEEEEEEEeCCCC
Confidence              477899999886554

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=7.4e-12  Score=99.13  Aligned_cols=83  Identities=29%  Similarity=0.434  Sum_probs=67.8

Q ss_pred             CcEEEEEEcCCC-CccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHc--CCCCCCEEEEECCEEcCCCCHHH
Q psy2827           8 GPREVQIAKSDT-GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKA--GIRKGDRILAVNNVNVEGATHKQ   84 (373)
Q Consensus         8 ~~r~v~l~r~~~-g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~a--GL~~GD~Il~InG~~v~~~s~~~   84 (373)
                      ..++|++.|+.. +|||++.++.+.            ..+++|..|.++|||+++  +|++||+|++|||+++.++++++
T Consensus         8 ~~~~v~l~~~~~g~lG~~l~gg~d~------------~~~i~V~~v~~g~~A~~~~g~L~~GD~Il~VNg~~v~~~~~~e   75 (106)
T d2cs5a1           8 NLVLIRMKPDENGRFGFNVKGGYDQ------------KMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQ   75 (106)
T ss_dssp             CCEEEEECCCSSSCCSEEEEEEGGG------------TEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHH
T ss_pred             cEEEEEEEeCCCCCccEEEEeeecC------------CCCEEEEEEcCCCcchhccCCCCCCCEEEEECCEECCCCCHHH
Confidence            457899988875 599999987432            123589999999999986  69999999999999999999999


Q ss_pred             HHHHHHhC----CCeEEEEEEe
Q psy2827          85 VVELIKSG----GDVLSLTVIS  102 (373)
Q Consensus        85 ~~~~i~~~----g~~v~l~V~r  102 (373)
                      +.++|+++    ...+.+++.+
T Consensus        76 ~~~ll~~~~~~~~~~v~L~vrp   97 (106)
T d2cs5a1          76 VVLFIKASCERHSGELMLLVRP   97 (106)
T ss_dssp             HHHHHHHHHHCCSSCEEEEEEC
T ss_pred             HHHHHHhCCCCCCcEEEEEECC
Confidence            99999863    3356666653

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.1e-11  Score=94.67  Aligned_cols=83  Identities=28%  Similarity=0.415  Sum_probs=66.2

Q ss_pred             CCCCCcEEEEEEcCCCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHH
Q psy2827           4 TQQTGPREVQIAKSDTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHK   83 (373)
Q Consensus         4 ~~~~~~r~v~l~r~~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~   83 (373)
                      ......++|+|.|+..+|||+|.++..               ...+...  ..++..++|++||+|++|||+++.+++|+
T Consensus         6 ~~~~e~~~v~l~k~~~glGf~i~g~~~---------------~~~~~~~--~~~~~~~~L~~GD~Il~VNg~~v~~~t~~   68 (96)
T d1ujva_           6 SGQAELMTLTIVKGAQGFGFTIADSPT---------------GQRVKQI--LDIQGCPGLCEGDLIVEINQQNVQNLSHT   68 (96)
T ss_dssp             CCCCCCEEEEEECCSSSSSEEEEEETT---------------EEEEEEE--SCGGGSTTCCSSCEEEEETTEECSSCCHH
T ss_pred             CCCceEEEEEEEeCCCcccEEEEeeCC---------------CceEeec--cCcccccCCCCCCEEEEECCEECCCCCHH
Confidence            334456899999999999999998732               1223333  24555678999999999999999999999


Q ss_pred             HHHHHHHh--CCCeEEEEEEec
Q psy2827          84 QVVELIKS--GGDVLSLTVISV  103 (373)
Q Consensus        84 ~~~~~i~~--~g~~v~l~V~r~  103 (373)
                      +++++|++  .+..++|+|.|.
T Consensus        69 evv~~lk~~~~g~~v~l~v~R~   90 (96)
T d1ujva_          69 EVVDILKDCPIGSETSLIIHRG   90 (96)
T ss_dssp             HHHHHHHHSCTTSEEEEEEECC
T ss_pred             HHHHHHHcCCCCCEEEEEEEEC
Confidence            99999998  378999999874

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=8.1e-12  Score=99.23  Aligned_cols=76  Identities=24%  Similarity=0.306  Sum_probs=64.0

Q ss_pred             CCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCC
Q psy2827          18 DTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQVVELIKS--GGD   94 (373)
Q Consensus        18 ~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~   94 (373)
                      +.+|||++.|+++.+.         ..++++|..|.+||||+++| |++||+|++|||.++.+++++++.+++++  .+.
T Consensus        29 ~~~lG~~i~gg~~~~~---------~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~VNg~~~~~~t~~ea~~~l~~~~~~~   99 (108)
T d2cssa1          29 GALLGLKVVGGKMTDL---------GRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEP   99 (108)
T ss_dssp             SSCSSEEEEEEEECTT---------SSEEEEEEEECTTSHHHHTSCCCTTCEEEEESSCBCTTSCHHHHHHHHHHGGGCS
T ss_pred             CCCcCEEEeccCCCCC---------CCcCEEEEEECCCCchhhcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCC
Confidence            3579999998854321         12356899999999999999 99999999999999999999999999997  356


Q ss_pred             eEEEEEEe
Q psy2827          95 VLSLTVIS  102 (373)
Q Consensus        95 ~v~l~V~r  102 (373)
                      .++|+|.|
T Consensus       100 ~v~l~v~R  107 (108)
T d2cssa1         100 QVEIIVSR  107 (108)
T ss_dssp             CEEEEEEE
T ss_pred             EEEEEEeC
Confidence            78888876

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=6.7e-12  Score=102.61  Aligned_cols=91  Identities=22%  Similarity=0.433  Sum_probs=70.0

Q ss_pred             CCCCcEEEEEE--cC-CCCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCC
Q psy2827           5 QQTGPREVQIA--KS-DTGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGA   80 (373)
Q Consensus         5 ~~~~~r~v~l~--r~-~~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~   80 (373)
                      ......++++.  |. ..||||+|.++.+.+..        ...+++|..|.+++||+++| |++||+|++|||+.+.++
T Consensus        20 ~~~~~~~~~v~l~~~~~~glG~~i~gg~~~~~~--------~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~   91 (127)
T d1wg6a_          20 ESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETG--------TDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGK   91 (127)
T ss_dssp             CCCEEEEEEEECSSSTTTCCCCEEEEEEETTTT--------EEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTS
T ss_pred             CCCccEEEEEEEccCCCCcEeEEEEeecCCCCC--------CcCCEEEEEECCCCchhccCCCCCCCEEEeECCEECCCC
Confidence            33344444443  33 46799999987543211        02245899999999999999 999999999999999999


Q ss_pred             CHHHHHHHHHhC-------CCeEEEEEEec
Q psy2827          81 THKQVVELIKSG-------GDVLSLTVISV  103 (373)
Q Consensus        81 s~~~~~~~i~~~-------g~~v~l~V~r~  103 (373)
                      ++++++++|+++       ..+++|+|.|-
T Consensus        92 ~~~e~~~~lr~a~~~~~~~~~~V~L~V~R~  121 (127)
T d1wg6a_          92 SNHEAMETLRRSMSMEGNIRGMIQLVILRR  121 (127)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCEEEEEEEEC
T ss_pred             CHHHHHHHHHhcccccCCCCCEEEEEEeeC
Confidence            999999999863       56899999873

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

Probab=99.20  E-value=4.4e-11  Score=92.12  Aligned_cols=74  Identities=27%  Similarity=0.404  Sum_probs=62.7

Q ss_pred             CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh-CCCeEE
Q psy2827          19 TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS-GGDVLS   97 (373)
Q Consensus        19 ~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~-~g~~v~   97 (373)
                      .|+|+++......            ...+.|..|.++|||++|||++||+|++|||+++.+++++++..+++. .|..++
T Consensus         5 ~GiGi~i~~~~~~------------~~~v~V~~v~~gsPA~~AGl~~GD~I~~Ing~~v~~~~~~~~~~~l~g~~g~~v~   72 (92)
T d1fc6a3           5 TGVGLEITYDGGS------------GKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVE   72 (92)
T ss_dssp             BBCSEEEEECTTC------------SSCEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEE
T ss_pred             EEEEEEEEEcCCC------------CceEEEEEecCCCChhHHhhHcCCcceecCceEcCCCCHHHHHHHhhCCCCCEEE
Confidence            4788888664321            224579999999999999999999999999999999999999999985 788999


Q ss_pred             EEEEecC
Q psy2827          98 LTVISVS  104 (373)
Q Consensus        98 l~V~r~~  104 (373)
                      |++.|..
T Consensus        73 l~i~R~g   79 (92)
T d1fc6a3          73 VVLHAPG   79 (92)
T ss_dssp             EEEEETT
T ss_pred             EEEEECC
Confidence            9999854

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=6.4e-11  Score=96.24  Aligned_cols=85  Identities=25%  Similarity=0.362  Sum_probs=68.7

Q ss_pred             cEEEEEEcCC--CCccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHHHH
Q psy2827           9 PREVQIAKSD--TGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAG-IRKGDRILAVNNVNVEGATHKQV   85 (373)
Q Consensus         9 ~r~v~l~r~~--~g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aG-L~~GD~Il~InG~~v~~~s~~~~   85 (373)
                      .+.|+|.|..  .+|||+|.++.+.+          ...+++|..|.++|||+++| |++||+|++|||..+.+  +.++
T Consensus        20 ~~~V~l~k~~~~~~lG~~i~~~~~~~----------~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~--~~~~   87 (124)
T d1wh1a_          20 LEEVDLYRMNSQDKLGLTVCYRTDDE----------DDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQN--REEA   87 (124)
T ss_dssp             ECCBCCCCSSTTCCCCEEEECCCCCS----------SCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCS--HHHH
T ss_pred             eEEEEEEECCCCCcccEEEEecCCCC----------CCCCEEEEEECCCChhhhhcccCCCCEEEEECCEECCC--HHHH
Confidence            4568888743  57999998874321          13457899999999999998 99999999999999988  8888


Q ss_pred             HHHHHh-CCCeEEEEEEecCc
Q psy2827          86 VELIKS-GGDVLSLTVISVSP  105 (373)
Q Consensus        86 ~~~i~~-~g~~v~l~V~r~~~  105 (373)
                      ..+++. .+..+.+++.|..+
T Consensus        88 ~~~l~~~~~~~v~l~v~r~~~  108 (124)
T d1wh1a_          88 VALLTSEENKNFSLLIARPEL  108 (124)
T ss_dssp             HHHHTCSSCCSCCEEEEECSS
T ss_pred             HHHHhhCCCCcEEEEEEeCCC
Confidence            888876 57788888887544

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.05  E-value=4.8e-10  Score=85.34  Aligned_cols=69  Identities=26%  Similarity=0.413  Sum_probs=59.0

Q ss_pred             CccEEEEecccCCCccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEE
Q psy2827          20 GFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLS   97 (373)
Q Consensus        20 g~Gfsi~g~~~~~~~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~   97 (373)
                      .+|+.+.....             .++++|..|.|+|||++|||++||.|++|||+++.+  +.++...+..  +|+.+.
T Consensus         4 ~LGv~~~~~~~-------------~~Gv~V~~V~~~spA~~aGl~~GD~I~~ing~~i~~--~~~~~~~i~~~~~g~~v~   68 (88)
T d2z9ia1           4 SLGVQVTNDKD-------------TLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPINS--ADALVAAVRSKAPGATVA   68 (88)
T ss_dssp             ECCEEEECCC--------------CCSEEEEEECTTSTTGGGTCCTTCEEEEETTEECCS--HHHHHHHHHTSCTTCEEE
T ss_pred             EEeEEEEecCC-------------CCcEEEEEECCCCHHHHcCCCCCCEEEEeCCCcCCc--HHHHHHHHHhCCCCCEEE
Confidence            47777766532             345689999999999999999999999999999998  8999998876  589999


Q ss_pred             EEEEec
Q psy2827          98 LTVISV  103 (373)
Q Consensus        98 l~V~r~  103 (373)
                      ++|.|.
T Consensus        69 l~v~r~   74 (88)
T d2z9ia1          69 LTFQDP   74 (88)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            999884

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.95  E-value=1.1e-09  Score=85.89  Aligned_cols=80  Identities=16%  Similarity=0.211  Sum_probs=63.0

Q ss_pred             ceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecCccccccCCCCCCCCCeeee
Q psy2827          46 LQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSPEEAERLEPPDDHSGYQQI  123 (373)
Q Consensus        46 ~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~~~~~~~~~~~~~~~~~~~i  123 (373)
                      +++|..|.++|||+++ |++||+|++|||+++.+  |.++...|..  .|+.++++|.|.+...+....+  +..+.+++
T Consensus         4 Gv~V~~V~~~sPA~~~-L~~GD~I~~ing~~v~~--~~~l~~~i~~~~~G~~v~l~v~R~~~~~~l~~~p--~~~~~~~i   78 (103)
T d2hgaa1           4 GVQIDSVVPGSPASKV-LTPGLVIESINGMPTSN--LTTYSAALKTISVGEVINITTDQGTFHLKTGRNP--NNSSRAYM   78 (103)
T ss_dssp             CEEEEEECSSSGGGGT-SCTTCEEEEETTEECSS--HHHHHHHHTTCCTTCEEEEEETTEEEEEECCBCS--SSCCSCBC
T ss_pred             cEEEEEECCCChHHhc-CCCCCEEEEECCEEcCC--HHHHHHHHhhCCCCCEEEEEEEECCEEEEEEecc--CCCCceEE
Confidence            5689999999999865 99999999999999998  9999999986  5999999998864433222222  23455688


Q ss_pred             eeeecCC
Q psy2827         124 DYTEKRS  130 (373)
Q Consensus       124 Gi~~~~~  130 (373)
                      |+.+...
T Consensus        79 Gi~~~~~   85 (103)
T d2hgaa1          79 GIRTSNH   85 (103)
T ss_dssp             CEEEECC
T ss_pred             EEEecce
Confidence            9877643

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=3.2e-09  Score=82.48  Aligned_cols=60  Identities=25%  Similarity=0.362  Sum_probs=53.6

Q ss_pred             CCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCeEEEEEEecCcc
Q psy2827          44 APLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSPE  106 (373)
Q Consensus        44 ~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~~g~~v~l~V~r~~~~  106 (373)
                      ..+++|..|.++|||++|||++||.|++|||.+|.+  ++++.+.++ .|+.+.++|.|.+..
T Consensus        30 ~~Gv~V~~V~~~spA~~aGl~~GDiI~~ing~~V~s--~~dl~~~l~-~g~~v~l~v~R~g~~   89 (100)
T d1lcya1          30 QHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQN--AEDVYEAVR-TQSQLAVQIRRGRET   89 (100)
T ss_dssp             SSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECCS--HHHHHHHHT-TCSSEEEEEEETTEE
T ss_pred             CCcEEEEEECCCchHhhcCCCCCcEEEEECCEEcCC--HHHHHHHhc-CCCEEEEEEEECCEE
Confidence            346789999999999999999999999999999999  999999885 688999999986543

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.83  E-value=8.5e-10  Score=83.95  Aligned_cols=59  Identities=25%  Similarity=0.358  Sum_probs=53.1

Q ss_pred             CceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCeEEEEEEecCc
Q psy2827          45 PLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKSGGDVLSLTVISVSP  105 (373)
Q Consensus        45 p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~~g~~v~l~V~r~~~  105 (373)
                      .++.|..|.++|||+++||++||.|++|||+++.+  ++++..++++.+..+.++|.|...
T Consensus        25 ~Gv~V~~V~~~spA~~aGl~~GDvI~~ing~~v~~--~~~~~~~l~~~~~~v~l~v~R~~~   83 (88)
T d1ky9b2          25 QGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKN--IAELRKVLDSKPSVLALNIQRGDS   83 (88)
T ss_dssp             SCCCBCCCCSSCTTGGGTCCSSCEEEEETTEECSS--HHHHHHHTTTCCSCCCEEEESSSC
T ss_pred             CeEEEEEECCCCHHHHcCCCCCcEEEEECCEEcCC--HHHHHHHHHhCCCEEEEEEEECCE
Confidence            35579999999999999999999999999999998  999999998888889999988543

>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.64  E-value=3.1e-09  Score=81.76  Aligned_cols=69  Identities=23%  Similarity=0.318  Sum_probs=58.6

Q ss_pred             ccccccccccCCceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecCc
Q psy2827          34 QLRSINGELYAPLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSP  105 (373)
Q Consensus        34 ~~~~~g~~~~~p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~~  105 (373)
                      ..+.+|+.. ..+++|..|.++|||++|||++||.|++|||.++.+  +.++...+..  .|+.+.++|.|.+.
T Consensus        17 ~~~~~gl~~-~~Gv~V~~V~~~spA~~aGl~~gDvI~~i~g~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~   87 (94)
T d1ky9a1          17 LAKAMKVDA-QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISS--FAALRAQVGTMPVGSKLTLGLLRDGK   87 (94)
T ss_dssp             HHHTSCCTT-CCSEECCCCTTCSSSTTTTCCTTCEECBSSSSBCCS--SHHHHHHTTSSBTTCCCEEEEESSSC
T ss_pred             HHHHcCCCC-CCCcEEEECCCChhHHHhCCCcccEEEEECCEEeCC--HHHHHHHHHhCCCCCEEEEEEEECCE
Confidence            345566642 347789999999999999999999999999999999  8999999876  58999999998654

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

Probab=98.64  E-value=3.3e-08  Score=74.77  Aligned_cols=59  Identities=24%  Similarity=0.208  Sum_probs=52.9

Q ss_pred             ceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecCcc
Q psy2827          46 LQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSPE  106 (373)
Q Consensus        46 ~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~~~  106 (373)
                      +..|..+.++|+|++|||++||.|++|||.++.+  ++++..++..  .+++++++|.|.+..
T Consensus        20 G~~v~~v~~~s~~~~aGl~~GDiI~~ing~~v~~--~~~~~~~~~~~~~~~~~~l~v~R~g~~   80 (87)
T d2i6va1          20 GYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTD--PNVMNTLFQSMNEMTEMSLTVERDGQQ   80 (87)
T ss_dssp             EEEEEECSCHHHHHHTTCCTTCEEEEETTEETTC--HHHHHHHHHTGGGCSEEEEEEEETTEE
T ss_pred             EEEEecCCCCCHHHHCCCCCCCEEEEECCEEeec--HHHHHHHHHhhccccccEEEEEECCEE
Confidence            3468889999999999999999999999999999  9999999987  689999999996543

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.63  E-value=3.9e-08  Score=74.98  Aligned_cols=56  Identities=16%  Similarity=0.224  Sum_probs=49.9

Q ss_pred             eEEEEecCC--------CHHHHcCC-CCCCEEEEECCEEcCCCCHHHHHHHHHh-CCCeEEEEEEecC
Q psy2827          47 QHVSAVLAG--------GAAEKAGI-RKGDRILAVNNVNVEGATHKQVVELIKS-GGDVLSLTVISVS  104 (373)
Q Consensus        47 ~~V~~V~~g--------spA~~aGL-~~GD~Il~InG~~v~~~s~~~~~~~i~~-~g~~v~l~V~r~~  104 (373)
                      ..|..+.+|        |||++||+ ++||+|++|||+++.+  +.++.++++. .|..+.|++.|..
T Consensus        14 ~~I~~i~~G~~~~~~~~sPa~~aGl~k~GD~I~~IdG~~v~~--~~~~~~~l~g~~G~~V~L~i~R~g   79 (91)
T d1k32a1          14 YVVAKAYAGDYSNEGEKSPIFEYGIDPTGYLIEDIDGETVGA--GSNIYRVLSEKAGTSARIRLSGKG   79 (91)
T ss_dssp             EEEEEECBSCTTSTTCBCGGGGGTCCCTTCEEEEETTEECBT--TBCHHHHHHTTTTSEEEEEEECSS
T ss_pred             EEEEEEecCCCCCcccCChhHhcCCCCCCCEEEEECCEeecC--cceeEEEEecCCCCEEEEEEEeCC
Confidence            468888776        99999999 7999999999999998  7899999988 7999999998854

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.55  E-value=7.1e-09  Score=80.45  Aligned_cols=59  Identities=24%  Similarity=0.322  Sum_probs=49.1

Q ss_pred             CceEEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHHh--CCCeEEEEEEecCc
Q psy2827          45 PLQHVSAVLAGGAAEKAGIRKGDRILAVNNVNVEGATHKQVVELIKS--GGDVLSLTVISVSP  105 (373)
Q Consensus        45 p~~~V~~V~~gspA~~aGL~~GD~Il~InG~~v~~~s~~~~~~~i~~--~g~~v~l~V~r~~~  105 (373)
                      .+++|.+|.++|||+++||++||.|++|||.++.+  +.++...+.+  .|+.+.+++.|.+.
T Consensus        26 ~Gv~V~~V~~~spA~~aGl~~GDiI~~ing~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~   86 (99)
T d1sota1          26 QGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAIS--ALETMDQVAEIRPGSVIPVVVMRDDK   86 (99)
T ss_dssp             -CEECCCCCSSSTTTSSSCCTTCEECBSSSSBCCC--SHHHHHHHHHSCTTCEEEECC-----
T ss_pred             CccEEEEecCCCCHHHcCCCcceEEEEECCEeccc--HHHHHHHHHcCCCCCEEEEEEEECCE
Confidence            45689999999999999999999999999999999  8999888876  68999999988654

>d1wgra_ d.15.1.5 (A:) Growth factor receptor-bound protein 7, GRB-7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: Growth factor receptor-bound protein 7, GRB-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=2.4e-07  Score=71.69  Aligned_cols=90  Identities=23%  Similarity=0.203  Sum_probs=74.6

Q ss_pred             CCccceEEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeec-cceeeccCcCCCCceeeecccc
Q psy2827         210 NISSPVDIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVE-YSFERKLEAKEFPHHLYIQNYS  288 (373)
Q Consensus       210 ~~~~~l~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~-~~~~r~l~~~e~p~~~~~~~~~  288 (373)
                      ....+.-+.+++|||...++.+....++.++++.++.++++...   ..|+||+... ....|+|.++|.|+. .+..+.
T Consensus         5 ~~~~~~vvkv~~~dg~~k~l~V~~~tTa~eV~~~l~~K~~~~~~---~~f~L~E~~~~~~leR~L~d~E~vl~-v~~~W~   80 (100)
T d1wgra_           5 SSGRPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSD---ETWGLVECHPHLALERGLEDHESVVE-VQAAWP   80 (100)
T ss_dssp             CCCSCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCC---CCCCEEEEETTTTEEEEECSSSCHHH-HHTTSC
T ss_pred             CCCCceEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHhCCCCC---CCeEEEEecCCCcceeecCchHhHHH-HHHcCC
Confidence            35678999999999999999999999999999999999999432   3699998874 578999999999986 334555


Q ss_pred             CCCCceEEEEeeccC
Q psy2827         289 TASATCLCIRKWLFS  303 (373)
Q Consensus       289 ~~~~~~~~lrk~~~~  303 (373)
                      ......++|||.|+.
T Consensus        81 ~~~~~r~v~rknya~   95 (100)
T d1wgra_          81 VGGDSRFVFRKNFAS   95 (100)
T ss_dssp             SSSCCEEEECSCCSS
T ss_pred             CCCCCEEEEeecCCC
Confidence            544556999999874

>d1mixa1 a.11.2.1 (A:195-308) Talin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Second domain of FERM
family: Second domain of FERM
domain: Talin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.04  E-value=0.0003  Score=54.64  Aligned_cols=46  Identities=15%  Similarity=0.092  Sum_probs=38.9

Q ss_pred             ChhhhhcccCChHHHHHHHHHHHHHHhcCCccch-hhHHHHHHHHhcc
Q psy2827         304 APLERSLVANDDRVATFMFWMAIDAVDRGQIRAE-DRLYELKALQDAS  350 (373)
Q Consensus       304 ~~~~~~l~~~d~~a~~~ly~Q~~~dv~~~~~~~~-~~~~~L~~lq~~~  350 (373)
                      |.+...... ||++++++|.|+..||.+|++.++ +...+|+||+.|-
T Consensus         5 ~~d~~~~~~-D~~~~~l~y~Q~k~dil~G~~~~~~~~a~~Laal~~Q~   51 (114)
T d1mixa1           5 YSDQNVDSR-DPVQLNLLYVQARDDILNGSHPVSFDKACEFAGYQCQI   51 (114)
T ss_dssp             CCHHHHHTS-CHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred             CCCCccccc-CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
Confidence            344444455 999999999999999999999987 8999999999864

>d2al6a1 a.11.2.1 (A:131-253) Focal adhesion kinase 1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Second domain of FERM
family: Second domain of FERM
domain: Focal adhesion kinase 1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.64  E-value=0.0006  Score=53.74  Aligned_cols=43  Identities=9%  Similarity=0.093  Sum_probs=35.8

Q ss_pred             hcccCChHHHHHHHHHHHHHHhcCCcc-ch-hhHHHHHHHHhccc
Q psy2827         309 SLVANDDRVATFMFWMAIDAVDRGQIR-AE-DRLYELKALQDASR  351 (373)
Q Consensus       309 ~l~~~d~~a~~~ly~Q~~~dv~~~~~~-~~-~~~~~L~~lq~~~~  351 (373)
                      +++.+|+++++|+|.|..+|+.+|.+. +. |.+-+|++|+-|..
T Consensus         5 ~~~~~D~~t~~~~y~Q~~~d~l~g~~~~~~~e~Ai~Laal~~Q~~   49 (123)
T d2al6a1           5 NQFTEDKPTLNFFYQQVKNDYMLEIADQVDQEIALKLGCLEIRRS   49 (123)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHH
Confidence            444559999999999999999999874 44 78899999997554

>d1xtea_ d.189.1.1 (A:) Serine/threonine-protein kinase Sgk3, Cisk {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: PX domain
superfamily: PX domain
family: PX domain
domain: Serine/threonine-protein kinase Sgk3, Cisk
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.03  E-value=0.0094  Score=45.84  Aligned_cols=37  Identities=16%  Similarity=0.312  Sum_probs=32.7

Q ss_pred             chhHHHHHhhcHHHHHHHHhchhhhhhhHHHHHHHHH
Q psy2827         166 TEQQLDSRRRGLEIYLEKVCAVRVIAESELMQEFLTD  202 (373)
Q Consensus       166 ~i~q~~~rr~gl~~yl~~v~~~~~i~~s~~~~~FL~~  202 (373)
                      +...++.|+.+|+.||+.+++.+.+.+++.+.+||..
T Consensus        74 ~~~~l~~Rr~~L~~yL~~l~~~~~l~~~~~~~~FL~~  110 (116)
T d1xtea_          74 DPDFIKQRRAGLNEFIQNLVRYPELYNHPDVRAFLQM  110 (116)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTCHHHHTSHHHHHHTTT
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCHhhhcChHHHhhcCC
Confidence            3444589999999999999999999999999999854

>d1h4ra1 a.11.2.1 (A:104-214) Merlin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Second domain of FERM
family: Second domain of FERM
domain: Merlin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.80  E-value=0.015  Score=44.37  Aligned_cols=37  Identities=8%  Similarity=0.076  Sum_probs=33.8

Q ss_pred             ChHHHHHHHHHHHHHHhcCCccch-hhHHHHHHHHhcc
Q psy2827         314 DDRVATFMFWMAIDAVDRGQIRAE-DRLYELKALQDAS  350 (373)
Q Consensus       314 d~~a~~~ly~Q~~~dv~~~~~~~~-~~~~~L~~lq~~~  350 (373)
                      |+++..++|.|+.+||.+|.+.|+ +...+|+||+.|-
T Consensus         8 ~e~tr~l~ylQlr~dil~G~~~~~~~~a~~LAal~~Qa   45 (111)
T d1h4ra1           8 QEITQHLFFLQVKKQILDEKIYCPPEASVLLASYAVQA   45 (111)
T ss_dssp             SHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence            589999999999999999999987 8999999998753

>d1gg3a1 a.11.2.1 (A:82-187) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Second domain of FERM
family: Second domain of FERM
domain: Erythroid membrane protein 4.1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.50  E-value=0.023  Score=42.97  Aligned_cols=40  Identities=13%  Similarity=0.141  Sum_probs=35.0

Q ss_pred             cccCChHHHHHHHHHHHHHHhcCCccch-hhHHHHHHHHhcc
Q psy2827         310 LVANDDRVATFMFWMAIDAVDRGQIRAE-DRLYELKALQDAS  350 (373)
Q Consensus       310 l~~~d~~a~~~ly~Q~~~dv~~~~~~~~-~~~~~L~~lq~~~  350 (373)
                      ++. +++.-.++|.|+..||.+|.+.|+ +..-+|+||..|-
T Consensus         5 ~L~-~e~Tr~l~ylQlr~~i~~G~~~~~~~~a~~Laal~~Qa   45 (106)
T d1gg3a1           5 QLT-EDITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQS   45 (106)
T ss_dssp             GSS-CHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred             Hhc-cHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHH
Confidence            355 688999999999999999999997 8889999998753

>d1wxaa1 d.15.1.5 (A:8-110) Afadin {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: Afadin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.70  E-value=0.026  Score=42.48  Aligned_cols=75  Identities=15%  Similarity=0.220  Sum_probs=55.0

Q ss_pred             CCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhheeeeec----------cceeeccCcCCCCceeeeccccCCCC
Q psy2827         223 DREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYLFEIVE----------YSFERKLEAKEFPHHLYIQNYSTASA  292 (373)
Q Consensus       223 DGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~lf~~~~----------~~~~r~l~~~e~p~~~~~~~~~~~~~  292 (373)
                      +-...++.+...+++.++++.++.+.|+ ....-.-|+|+....          ....|.|.+.|+|..+ ..++....+
T Consensus        15 ~~~yk~l~vs~~tTa~eVI~~~L~k~~l-~~~~~~~y~L~ev~~~~~~~~~~~~~~~eR~L~~~E~PL~l-~~~W~~~~~   92 (103)
T d1wxaa1          15 NIPYKTILLSTTDTADFAVAESLEKYGL-EKENPKDYCIARVMLPPGAQHSDERGAKEIILDDDECPLQI-FREWPSDKG   92 (103)
T ss_dssp             SSCCEEEECCSSCCHHHHHHHHHHHHTC-SSSCTTTEEEEEEECCSSCCSSSSTTCEEECCCSSCCHHHH-HHTCCGGGC
T ss_pred             CCCeEEEEECCCCcHHHHHHHHHHHhCC-CCCChhhEEEEEEEecCCCcccccCCcEEEEcCCCCCHHHH-HHhCccCCC
Confidence            4444578888899999999999999999 666777888887642          2457999999999862 234433333


Q ss_pred             -ceEEEEe
Q psy2827         293 -TCLCIRK  299 (373)
Q Consensus       293 -~~~~lrk  299 (373)
                       ..+.||+
T Consensus        93 ~~rF~Lrr  100 (103)
T d1wxaa1          93 ILVFQLKR  100 (103)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEEec
Confidence             3477876

>d1ef1a1 a.11.2.1 (A:88-198) Moesin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Second domain of FERM
family: Second domain of FERM
domain: Moesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.66  E-value=0.031  Score=42.53  Aligned_cols=36  Identities=11%  Similarity=0.134  Sum_probs=33.7

Q ss_pred             ChHHHHHHHHHHHHHHhcCCccch-hhHHHHHHHHhc
Q psy2827         314 DDRVATFMFWMAIDAVDRGQIRAE-DRLYELKALQDA  349 (373)
Q Consensus       314 d~~a~~~ly~Q~~~dv~~~~~~~~-~~~~~L~~lq~~  349 (373)
                      ++++..++|.|+..||.+|.+.|+ +...+|+||..|
T Consensus         8 ~e~tr~l~ylQlr~dil~G~~~~~~~~a~~Laal~~Q   44 (111)
T d1ef1a1           8 QDITQRLFFLQVKEGILNDDIYCPPETAVLLASYAVQ   44 (111)
T ss_dssp             SHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Confidence            699999999999999999999987 899999999887

>d1ocsa_ d.189.1.1 (A:) Sorting nexin grd19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: PX domain
superfamily: PX domain
family: PX domain
domain: Sorting nexin grd19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.61  E-value=0.091  Score=40.94  Aligned_cols=36  Identities=19%  Similarity=0.554  Sum_probs=31.1

Q ss_pred             hhHHHHHhhcHHHHHHHHhchhhhhh-hHHHHHHHHH
Q psy2827         167 EQQLDSRRRGLEIYLEKVCAVRVIAE-SELMQEFLTD  202 (373)
Q Consensus       167 i~q~~~rr~gl~~yl~~v~~~~~i~~-s~~~~~FL~~  202 (373)
                      ..-++.||.+|+.||+.++++|.+.+ |+.+..||..
T Consensus        92 ~~~ie~Rr~~Le~fL~~l~~~p~l~~~s~~l~~FLe~  128 (132)
T d1ocsa_          92 NEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRFIEA  128 (132)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHcCHHHHhCCHHHHhcCCc
Confidence            34458999999999999999999986 7899999963

>d1c1yb_ d.15.1.5 (B:) c-Raf1 RBD {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: c-Raf1 RBD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.62  E-value=0.27  Score=34.70  Aligned_cols=42  Identities=24%  Similarity=0.419  Sum_probs=36.7

Q ss_pred             EEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhch
Q psy2827         216 DIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAY  258 (373)
Q Consensus       216 ~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~  258 (373)
                      .+.++||||++=.+++..|-++.+.+..++++=|+ ......+
T Consensus         3 ~iRv~LPngq~T~V~vrpG~tird~L~k~l~kRgl-~~~~c~V   44 (77)
T d1c1yb_           3 TIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGL-QPECCAV   44 (77)
T ss_dssp             EEEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTC-CGGGEEE
T ss_pred             eEEEECCCCCeEEEEecCCCCHHHHHHHHHHHcCC-CHHHEEE
Confidence            58899999999999999999999999999999999 4444333

>d1wxma1 d.15.1.5 (A:8-80) A-Raf proto-oncogene serine/threonine-protein kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: A-Raf proto-oncogene serine/threonine-protein kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.10  E-value=0.21  Score=34.92  Aligned_cols=45  Identities=20%  Similarity=0.344  Sum_probs=38.2

Q ss_pred             EEEEEcCCCceEEEEEEecCCHHHHHHHhccccCCCchhhhchhhe
Q psy2827         216 DIKILLPDREVITVSVRKSATADEVYASAVPKLYLQSPSSAAYFYL  261 (373)
Q Consensus       216 ~l~nlLPDGg~i~ie~~~~~~~~~~~~~~~~~igl~~~~~l~~f~l  261 (373)
                      .+.++||||++=.+++..+-++.+.+..++++-|+ ......+|..
T Consensus         2 ~iRv~LPngq~T~V~vrpG~tir~~L~k~l~kRgl-~~~~~~V~~~   46 (73)
T d1wxma1           2 TVKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGL-NQDCCVVYRL   46 (73)
T ss_dssp             EEEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTC-CSSSEEEEEE
T ss_pred             eEEEEcCCCCeEEEEecCCCCHHHHHHHHHHHcCC-CHHHEEEEEe
Confidence            37899999999999999999999999999999999 5455444443

>d1kmda_ d.189.1.1 (A:) Vam7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: PX domain
superfamily: PX domain
family: PX domain
domain: Vam7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.77  E-value=0.36  Score=36.69  Aligned_cols=37  Identities=30%  Similarity=0.536  Sum_probs=31.2

Q ss_pred             hhHHHHHhhcHHHHHHHHhchhh---hhhhHHHHHHHHHh
Q psy2827         167 EQQLDSRRRGLEIYLEKVCAVRV---IAESELMQEFLTDA  203 (373)
Q Consensus       167 i~q~~~rr~gl~~yl~~v~~~~~---i~~s~~~~~FL~~~  203 (373)
                      ..-++.|+.+|+.||+.++++|.   +.+|..+++||...
T Consensus        75 ~~~ie~R~~~Le~yL~~ll~~p~~~~~~~s~~l~~FL~~s  114 (117)
T d1kmda_          75 PEMIDERRIGLERFLNELYNDRFDSRWRDTKIAQDFLQLS  114 (117)
T ss_dssp             HHHHHHHHTTHHHHHHHHHCCSSCCHHHHSHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcchhhhcCCHHHHHHhCCC
Confidence            33458999999999999999885   56799999999764