Diaphorina citri psyllid: psy2928

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740----
MNEVGGKHETPAPTTSWDSMSVPQGPPIPITHENIQQVMVPVPIKMQPPPNLNPMMEHGNPMQQGPMTPHQGVQMGGSYIDHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGSGFDPIGDPLGICAGPPPPHTPNMNMPPQPMKRRASEGMAMGAPLPKKFILSGPWDLEIPTNVIILERAPTSMPQPHPEIELFRCNLTNKLRHLLQDMCHSREGIDAPHESFNRWLMERKVIDTGSDPLLPSQCYPEISPCMYREIMNDIPLKLKKPKYTGDARKQLSKYAEAAKKLIESRNANSESRKVVKWNAEDTFLWLRKTVGATYDDFQERLNHLKTQCQPHLTETVKDSVEKICLKIQHLSTEHAKKIRDKNSDLLTANGIQEPPPPPSTLNSRKVWCYPIQFSTPSCRMPSIEYHPDKEQIMLRFQNDTVTVNSLHFQKLEHLYRYSCFDDKKFELFLPRVWCLLKRYTTFLGQVTAQQDSGLSTWPRNSCFDDKKFELFLPRVWCLLKRYTTFLGQVTAQSGKTQASLPGPVFECLNKHFGVTFECFASPLNCYFRQYCSMFPDTDSYFGSRGPILDLKAVSGSFQAHPPYCEELMEATVGHFEHLLADSPEPLSFIVFVPDFRDPSPSALVKLEASHFKRKQVVVPAFEHEFRIGVQPFVTNKTDLNVKSMHGTLVVWLQNSAGFAKWTPTEDKVEKLLDAFRPGRERERDKLELLSPKAEPNPQNTRLYLETK
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEcccccccccEEEEccccEEEEEEEccEEEEEHHHHHHHHHHHHHcccccHHHHHccHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHccccEEEccccccccccccccccccccccccccccccccccccCEEECcccccHHHHHHHHHHHHHHHHcccccCEEEEEEccccccccHHHHHHHHccccccccEEcccccccccccccccccccccccccccccEEEEEEccHHHccccccHHHHHHHHHHccccccccccccccccccccccccccccccccc
*******************************************************************************IDHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGS*F**IG**LGI************************************FILSGPWDLEIPTNVIILERAPTSMPQPHPEIELFRCNLTNKLRHLLQDMCHSREGIDAPHESFNRWLMERKVIDTGSDPLLPSQCYPEISPCMYREIMNDIPLKLK******DARKQLSKYAE*****************VVKWNAEDTFLWLRKTVGATYDDFQERLNHLKTQCQPHLTETVKDSVEKICLKIQHLSTEHAKKIR*************************KVWCYPIQFSTPSCRMPSIEYHPDKEQIMLRFQNDTVTVNSLHFQKLEHLYRYSCFDDKKFELFLPRVWCLLKRYTTFLGQVTAQQDSGLSTWPRNSCFDDKKFELFLPRVWCLLKRYTTFLGQVTAQSGKTQASLPGPVFECLNKHFGVTFECFASPLNCYFRQYCSMFPDTDSYFGSRGPILDLKAVSGSFQAHPPYCEELMEATVGHFEHLLADSPEPLSFIVFVPDFRDPSPSALVKLEASHFKRKQVVVPAFEHEFRIGVQPFVTNKTDLNVKSMHGTLVVWLQNSAGFAKWTPTEDKVEKLLD**********************************
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MNEVGGKHETPAPTTSWDSMSVPQGPPIPITHENIQQVMVPVPIKMQPPPNLNPMMEHGNPMQQGPMTPHQGVQMGGSYIDHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGSGFDPIGDPLGICAGPPPPHTPNMNMPPQPMKRRASEGMAMGAPLPKKFILSGPWDLEIPTNVIILERAPTSMPQPHPEIELFRCNLTNKLRHLLQDMCHSREGIDAPHESFNRWLMERKVIDTGSDPLLPSQCYPEISPCMYREIMNDIPLKLKKPKYTGDARKQLSKYAEAAKKLIESRNANSESRKVVKWNAEDTFLWLRKTVGATYDDFQERLNHLKTQCQPHLTETVKDSVEKICLKIQHLSTEHAKKIRDKNSDLLTANGIQEPPPPPSTLNSRKVWCYPIQFSTPSCRMPSIEYHPDKEQIMLRFQNDTVTVNSLHFQKLEHLYRYSCFDDKKFELFLPRVWCLLKRYTTFLGQVTAQQDSGLSTWPRNSCFDDKKFELFLPRVWCLLKRYTTFLGQVTAQSGKTQASLPGPVFECLNKHFGVTFECFASPLNCYFRQYCSMFPDTDSYFGSRGPILDLKAVSGSFQAHPPYCEELMEATVGHFEHLLADSPEPLSFIVFVPDFRDPSPSALVKLEASHFKRKQVVVPAFEHEFRIGVQPFVTNKTDLNVKSMHGTLVVWLQNSAGFAKWTPTEDKVEKLLDAFRPGRERERDKLELLSPKAEPNPQNTRLYLETK

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Phosphorylated CTD-interacting factor 1 May play a role in transcription elongation or in coupling transcription to pre-mRNA processing through its association with the phosphorylated C-terminal domain (CTD) of RNAPII largest subunit.confidentP59114
Phosphorylated CTD-interacting factor 1 May play a role in transcription elongation or in coupling transcription to pre-mRNA processing through its association with the phosphorylated C-terminal domain (CTD) of RNAPII largest subunit.confidentQ9H4Z3

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0015629 [CC]actin cytoskeletonprobableGO:0005856, GO:0043232, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0043229, GO:0043228, GO:0044424, GO:0043226
GO:0010923 [BP]negative regulation of phosphatase activityprobableGO:0051336, GO:0019220, GO:0051346, GO:0019222, GO:0065009, GO:0010921, GO:0050790, GO:0031323, GO:0050789, GO:0051174, GO:0065007, GO:0044092, GO:0008150, GO:0035303, GO:0050794, GO:0043086
GO:0005730 [CC]nucleolusprobableGO:0005575, GO:0043232, GO:0031981, GO:0043233, GO:0005634, GO:0044464, GO:0031974, GO:0005622, GO:0044446, GO:0070013, GO:0043229, GO:0043228, GO:0044428, GO:0005623, GO:0044424, GO:0043227, GO:0043226, GO:0044422, GO:0043231
GO:0005825 [CC]half bridge of spindle pole bodyprobableGO:0043229, GO:0043228, GO:0000922, GO:0043226, GO:0005737, GO:0044446, GO:0005819, GO:0005816, GO:0005815, GO:0044430, GO:0044450, GO:0005856, GO:0015630, GO:0043234, GO:0032991, GO:0043232, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0044444, GO:0044424, GO:0044422

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2JX8, chain A
Confidence level:very confident
Coverage over the Query: 84-130
View the alignment between query and template
View the model in PyMOL
Template: 2P32, chain A
Confidence level:probable
Coverage over the Query: 279-348
View the alignment between query and template
View the model in PyMOL