Psyllid ID: psy2928

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740----
MNEVGGKHETPAPTTSWDSMSVPQGPPIPITHENIQQVMVPVPIKMQPPPNLNPMMEHGNPMQQGPMTPHQGVQMGGSYIDHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGSGFDPIGDPLGICAGPPPPHTPNMNMPPQPMKRRASEGMAMGAPLPKKFILSGPWDLEIPTNVIILERAPTSMPQPHPEIELFRCNLTNKLRHLLQDMCHSREGIDAPHESFNRWLMERKVIDTGSDPLLPSQCYPEISPCMYREIMNDIPLKLKKPKYTGDARKQLSKYAEAAKKLIESRNANSESRKVVKWNAEDTFLWLRKTVGATYDDFQERLNHLKTQCQPHLTETVKDSVEKICLKIQHLSTEHAKKIRDKNSDLLTANGIQEPPPPPSTLNSRKVWCYPIQFSTPSCRMPSIEYHPDKEQIMLRFQNDTVTVNSLHFQKLEHLYRYSCFDDKKFELFLPRVWCLLKRYTTFLGQVTAQQDSGLSTWPRNSCFDDKKFELFLPRVWCLLKRYTTFLGQVTAQSGKTQASLPGPVFECLNKHFGVTFECFASPLNCYFRQYCSMFPDTDSYFGSRGPILDLKAVSGSFQAHPPYCEELMEATVGHFEHLLADSPEPLSFIVFVPDFRDPSPSALVKLEASHFKRKQVVVPAFEHEFRIGVQPFVTNKTDLNVKSMHGTLVVWLQNSAGFAKWTPTEDKVEKLLDAFRPGRERERDKLELLSPKAEPNPQNTRLYLETK
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEcccccccccEEEEccccEEEEEEEccEEEEEHHHHHHHHHHHHHHccccHHHHHccHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHcccEEEccccccccccccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHcccccEEEEEEEcccccccHHHHHHHHHccccccccEEcccccccccccccccccccccccccccccEEEEEEcHHHHHcccccHHHHHHHHHHccccccccccccccccccccccccccccccccc
ccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccHcccHHHHHHcHHHHHcccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHccccEEEcccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEccEEEEccccccccEEEEEcccEEEEEEcccEEEEcHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHcccEEEEEccccccHHHHHcccccccccccccccccccccccccEEEccccccHHHHHHHHHHHHHHHHccccccEEEEEEccccccccHHHHHHHcccccccEEEEccHcccccccccccccccccEEEEcccccEEEEEEccHHHccccccHHHHHHHHHHHcccccccccHcccccccccccccccEEEEEcc
mnevggkhetpapttswdsmsvpqgppipitheniqqvmvpvpikmqpppnlnpmmehgnpmqqgpmtphqgvqmggsyidhelppelIQQGWRKFWskrenrpyywnrasgeslwdmpqgsgfdpigdplgicagpppphtpnmnmppqpmkrrasegmamgaplpkkfilsgpwdleiptnviileraptsmpqphpeielFRCNLTNKLRHLLQDMchsregidapheSFNRWLMERKVidtgsdpllpsqcypeispcMYREIMNdiplklkkpkytgdARKQLSKYAEAAKKLIESrnansesrKVVKWNAEDTFLWLRKTVGATYDDFQERLNHLktqcqphlteTVKDSVEKICLKIQHLSTEHAKKIRDknsdlltangiqepppppstlnsrkvwcypiqfstpscrmpsieyhpdkEQIMLRFQNDTVTVNSLHFqklehlyryscfddkkfelFLPRVWCLLKRYTTflgqvtaqqdsglstwprnscfddkkfelFLPRVWCLLKRYTTFLgqvtaqsgktqaslpgpvfeclnkhfgvtfecfasplncyfrqycsmfpdtdsyfgsrgpildlkavsgsfqahppycEELMEATVGHFEhlladspeplsfivfvpdfrdpspsALVKLEAShfkrkqvvvpafehefrigvqpfvtnktdlnvksMHGTLVVWLQNsagfakwtptEDKVEKLLDAfrpgrererdklellspkaepnpqntrlyletk
mnevggkhetpapttswdsmsVPQGPPIPITHENIQQVMVPVPIKMQPPPNLNPMMEHGNPMQQGPMTPHQGVQMGGSYIDHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGSGFDPIGDPLGICAGPPPPHTPNMNMPPQPMKRRASEGMAMGAPLPKKFILSGPWDLEIPTNVIILERAPTSMPQPHPEIELFRCNLTNKLRHLLQDMCHSREGIDAPHESFNRWLMERKVIDTGSDPLLPSQCYPEISPCMYREIMNDIPLKLKKPKYTGDARKQLSKYAEAAKKLiesrnansesrkvvkwnaedtFLWLRKTVGATYDDFQERLNHLKTQCQPHLTETVKDSVEKICLKIQHLSTEHAKKIRDKNSDLLTangiqepppppstlnsrKVWCYPIQFSTPSCRMPSIEYHPDKEQIMLRFQNDTVTVNSLHFQKLEHLYRYSCFDDKKFELFLPRVWCLLKRYTTFLGQVTaqqdsglstwprnsCFDDKKFELFLPRVWCLLKRYTTFLGQVTAQsgktqaslpgPVFECLNKHFGVTFECFASPLNCYFRQYCSMFPDTDSYFGSRGPILDLKAVSGSFQAHPPYCEELMEATVGHFEHLLADSPEPLSFIVFVPDFRDPSPSALVKLEASHFKRKQVVVPAFEHEFRIGVQPFVTNKTDLNVKSMHGTLVVWLQNSAGfakwtptedKVEKLLdafrpgrererdklellspkaepnpqntrlyletk
MNEVGGKHETPAPTTSWDSMSVPQGPPIPITHENIQQVMVPVPIKMQPPPNLNPMMEHGNPMQQGPMTPHQGVQMGGSYIDHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGSGFDPIGDPLGICAGpppphtpnmnmppqpmKRRASEGMAMGAPLPKKFILSGPWDLEIPTNVIILERAPTSMPQPHPEIELFRCNLTNKLRHLLQDMCHSREGIDAPHESFNRWLMERKVIDTGSDPLLPSQCYPEISPCMYREIMNDIPLKLKKPKYTGDARKQLSKYAEAAKKLIESRNANSESRKVVKWNAEDTFLWLRKTVGATYDDFQERLNHLKTQCQPHLTETVKDSVEKICLKIQHLSTEHAKKIRDKNSDLLTANGIQEPPPPPSTLNSRKVWCYPIQFSTPSCRMPSIEYHPDKEQIMLRFQNDTVTVNSLHFQKLEHLYRYSCFDDKKFELFLPRVWCLLKRYTTFLGQVTAQQDSGLSTWPRNSCFDDKKFELFLPRVWCLLKRYTTFLGQVTAQSGKTQASLPGPVFECLNKHFGVTFECFASPLNCYFRQYCSMFPDTDSYFGSRGPILDLKAVSGSFQAHPPYCEELMEATVGHFEHLLADSPEPLSFIVFVPDFRDPSPSALVKLEASHFKRKQVVVPAFEHEFRIGVQPFVTNKTDLNVKSMHGTLVVWLQNSAGFAKWTPTEDKVEKLLDAFRPGRERERDKLELLSPKAEPNPQNTRLYLETK
******************************************************************************YIDHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDM*****F**IG**LGI**********************************KKFILSGPWDLEIPTNVIILERA*********EIELFRCNLTNKLRHLLQDMCHSREGIDAPHESFNRWLMERKVIDTGSDPLLPSQCYPEISPCMYREIMNDIPLKLK**********************************VVKWNAEDTFLWLRKTVGATYDDFQERLNHLKTQCQPHLTETVKDSVEKICLKIQHLS*********************************KVWCYPIQFSTPSCRMPSIEYHPDKEQIMLRFQNDTVTVNSLHFQKLEHLYRYSCFDDKKFELFLPRVWCLLKRYTTFLGQVTAQQDSGLSTWPRNSCFDDKKFELFLPRVWCLLKRYTTFLGQVTAQSGKTQASLPGPVFECLNKHFGVTFECFASPLNCYFRQYCSMFPDTDSYFGSRGPILDLKAVSGSFQAHPPYCEELMEATVGHFEHLLADSPEPLSFIVFVPDFRDPSPSALVKLEASHFKRKQVVVPAFEHEFRIGVQPFVTNKTDLNVKSMHGTLVVWLQNSAGFAKWTPTEDKV***************************************
****************************************************************************************IQQGWRKFWSKRENRPYYWNRASGESLWDMPQGS****************************************************PWDLEIPTNVIILERAPTSMPQPHPEIELFRCNLTNKLRHLLQDMCHSREGIDAPHESFNRWLMERKVIDTGSDPLLPSQCY*****CMYREIMNDIPLKLK******DARKQLSKYAE**********************************************************TVKDSVEKICLKIQHLSTEHAKKIR***************************WCYPIQFSTPSCRMPSIEYHPDKEQIMLRFQNDTVTVNSLHFQKLEHLYRYSCFDDKKFELFLPRVWCLLKRYTTFLGQVTAQQ************FDDKKFELFLPRVWCLLKRYTTFLGQVTAQSGKTQASLPGPVFECLNKHFGVTFECFASPLNCYFRQYCSMFPDTDSYFGSRGPILDLKAVSGSFQAHPPYCEELMEATVGHFEHLLADSPEPLSFIVFVPDFRDPSPSALVKLEASHFKRKQVVVPAFEHEFRIGVQPFVTNKTDLNVKSMHGTLVVWLQNSAGFAKWTPTEDKVEKLLD**********************************
*******************MSVPQGPPIPITHENIQQVMVPVPIKMQPPPNLNPMMEHGNPMQQGPMTPHQGVQMGGSYIDHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGSGFDPIGDPLGICAGPPPPHTPNMNMPPQPMKRRASEGMAMGAPLPKKFILSGPWDLEIPTNVIILERAPTSMPQPHPEIELFRCNLTNKLRHLLQDMCHSREGIDAPHESFNRWLMERKVIDTGSDPLLPSQCYPEISPCMYREIMNDIPLKLKKPKYTGDARKQLSKYAEAAKKLIES*********VVKWNAEDTFLWLRKTVGATYDDFQERLNHLKTQCQPHLTETVKDSVEKICLKIQHLSTEHAKKIRDKNSDLLTANGIQEPPPPPSTLNSRKVWCYPIQFSTPSCRMPSIEYHPDKEQIMLRFQNDTVTVNSLHFQKLEHLYRYSCFDDKKFELFLPRVWCLLKRYTTFLGQVTAQQDSGLSTWPRNSCFDDKKFELFLPRVWCLLKRYTTFLGQVTAQSGKTQASLPGPVFECLNKHFGVTFECFASPLNCYFRQYCSMFPDTDSYFGSRGPILDLKAVSGSFQAHPPYCEELMEATVGHFEHLLADSPEPLSFIVFVPDFRDPSPSALVKLEASHFKRKQVVVPAFEHEFRIGVQPFVTNKTDLNVKSMHGTLVVWLQNSAGFAKWTPTEDKVEKLLDAFRPGRERERDKLELLSPKAEPNPQNTRLYLETK
***********************************QQVMVPVPIKMQPP******************************IDHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGSGFDPIGDPLGICAG*********************************FILSGPWDLEIPTNVIILERAPTSMPQPHPEIELFRCNLTNKLRHLLQDMCHSREGIDAPHESFNRWLMERKVIDTGSDPLLPSQCYPEISPCMYREIMNDIPLKLKKPKYTGDARKQLSKYAEAAKKLIESRNANSESRKVVKWNAEDTFLWLRKTVGATYDDFQERLNHLKTQCQPHLTETVKDSVEKICLKIQHLSTEHAKKIRDKNSDLLTANGIQEPPPPPSTLNSRKVWCYPIQFSTPSCRMPSIEYHPDKEQIMLRFQNDTVTVNSLHFQKLEHLYRYSCFDDKKFELFLPRVWCLLKRYTTFLGQVTAQQDSGLSTWPRNSCFDDKKFELFLPRVWCLLKRYTTFLGQVTAQSGKTQASLPGPVFECLNKHFGVTFECFASPLNCYFRQYCSMFPDTDSYFGSRGPILDLKAVSGSFQAHPPYCEELMEATVGHFEHLLADSPEPLSFIVFVPDFRDPSPSALVKLEASHFKRKQVVVPAFEHEFRIGVQPFVTNKTDLNVKSMHGTLVVWLQNSAGFAKWTPTEDKVEKLLDAFRP************SP******QNTR******
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MNEVGGKHETPAPTTSWDSMSVPQGPPIPITHENIQQVMVPVPIKMQPPPNLNPMMEHGNPMQQGPMTPHQGVQMGGSYIDHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGSGFDPIGDPLGICAGPPPPHTPNMNMPPQPMKRRASEGMAMGAPLPKKFILSGPWDLEIPTNVIILERAPTSMPQPHPEIELFRCNLTNKLRHLLQDMCHSREGIDAPHESFNRWLMERKVIDTGSDPLLPSQCYPEISPCMYREIMNDIPLKLKKPKYTGDARKQLSKYAEAAKKLIESRNANSESRKVVKWNAEDTFLWLRKTVGATYDDFQERLNHLKTQCQPHLTETVKDSVEKICLKIQHLSTEHAKKIRDKNSDLLTANGIQEPPPPPSTLNSRKVWCYPIQFSTPSCRMPSIEYHPDKEQIMLRFQNDTVTVNSLHFQKLEHLYRYSCFDDKKFELFLPRVWCLLKRYTTFLGQVTAQQDSGLSTWPRNSCFDDKKFELFLPRVWCLLKRYTTFLGQVTAQSGKTQASLPGPVFECLNKHFGVTFECFASPLNCYFRQYCSMFPDTDSYFGSRGPILDLKAVSGSFQAHPPYCEELMEATVGHFEHLLADSPEPLSFIVFVPDFRDPSPSALVKLEASHFKRKQVVVPAFEHEFRIGVQPFVTNKTDLNVKSMHGTLVVWLQNSAGFAKWTPTEDKVEKLLDAFRPGRERERDKLELLSPKAEPNPQNTRLYLETK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query744 2.2.26 [Sep-21-2011]
Q9H4Z3704 Phosphorylated CTD-intera yes N/A 0.821 0.867 0.449 1e-172
P59114706 Phosphorylated CTD-intera yes N/A 0.821 0.865 0.444 1e-169
>sp|Q9H4Z3|PCIF1_HUMAN Phosphorylated CTD-interacting factor 1 OS=Homo sapiens GN=PCIF1 PE=1 SV=1 Back     alignment and function desciption
 Score =  605 bits (1561), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 318/708 (44%), Positives = 427/708 (60%), Gaps = 97/708 (13%)

Query: 58  HGNPMQQGPMTPHQGVQMGGS--------YIDHELPPELIQQGWRKFWSKRENRPYYWNR 109
           HG+P ++  +  H       S         +  +LP EL+  GW K WS+RENRPYY+NR
Sbjct: 6   HGSPREEASLLSHSPGTSNQSQPCSPKPIRLVQDLPEELVHAGWEKCWSRRENRPYYFNR 65

Query: 110 ASGESLWDMPQGSGFDPIGDPLGICAGPPPPHTPNMNMPP---QPMKRRASEGMAMGAPL 166
            + +SLW+MP     D I DPLG+ A P P  +  +  PP   +P KR+ SE    G  +
Sbjct: 66  FTNQSLWEMPVLGQHDVISDPLGLNATPLPQDSSLVETPPAENKPRKRQLSEEQPSGNGV 125

Query: 167 PK-----------KFILSGP------------------------------WDLEIPTNVI 185
            K           + + S P                              WDL+I TN +
Sbjct: 126 KKPKIEIPVTPTGQSVPSSPSIPGTPTLKMWGTSPEDKQQAALLRPTEVYWDLDIQTNAV 185

Query: 186 ILERAPTSMPQPHPEIELFRCNLTNKLRHLLQDMCHSREGIDAPHESFNRWLMERKVIDT 245
           I  R P+ +  PHPE+EL R  L  KLR   +++C  REGI+ P ESFNRW++ERKV+D 
Sbjct: 186 IKHRGPSEVLPPHPEVELLRSQLILKLRQHYRELCQQREGIEPPRESFNRWMLERKVVDK 245

Query: 246 GSDPLLPSQCYPEISPCMYREIMNDIPLKLKKPKYTGDARKQLSKYAEAAKKLIESRNAN 305
           GSDPLLPS C P +SP M+REIMNDIP++L + K+  +A++ L KYAEAA++LIESR+A+
Sbjct: 246 GSDPLLPSNCEPVVSPSMFREIMNDIPIRLSRIKFREEAKRLLFKYAEAARRLIESRSAS 305

Query: 306 SESRKVVKWNAEDTFLWLRKTVGATYDDFQERLNHLKTQCQPHLTETVKDSVEKICLKIQ 365
            +SRKVVKWN EDTF WLRK   A+ +D+ +RL HL+ QC PH++   KDSVE IC KI 
Sbjct: 306 PDSRKVVKWNVEDTFSWLRKDHSASKEDYMDRLEHLRRQCGPHVSAAAKDSVEGICSKIY 365

Query: 366 HLSTEHAKKIRDKNSDLLTANGIQEPPPPPSTLNSRKVWCYPIQFSTPSCRMPSIEYHPD 425
           H+S E+ K+IR+K+  +L  N I E       +  R V+CYP++ +  +  MPS+E H +
Sbjct: 366 HISLEYVKRIREKHLAILKENNISE-EVEAPEVEPRLVYCYPVRLAVSAPPMPSVEMHME 424

Query: 426 KEQIMLRFQNDTVTVNSLHFQKLEHLYRYSCFDDKKFELFLPRVWCLLKRYTTFLGQVTA 485
              + +R++ + V V+  +F KL  LYRYSC DD  FE FLPRVWCLL+RY    G V  
Sbjct: 425 NNVVCIRYKGEMVKVSRNYFSKLWLLYRYSCIDDSAFERFLPRVWCLLRRYQMMFG-VGL 483

Query: 486 QQDSGLSTWPRNSCFDDKKFELFLPRVWCLLKRYTTFLGQVTAQSGKTQASLPGPVFECL 545
            + +GL                                          Q SLP  VFE L
Sbjct: 484 YEGTGL------------------------------------------QGSLPVHVFEAL 501

Query: 546 NKHFGVTFECFASPLNCYFRQYCSMFPDTDSYFGSRGPILDLKAVSGSFQAHPPYCEELM 605
           ++ FGV+FECFASPLNCYFRQYCS FPDTD YFGSRGP LD   +SGSF+A+PP+CEELM
Sbjct: 502 HRLFGVSFECFASPLNCYFRQYCSAFPDTDGYFGSRGPCLDFAPLSGSFEANPPFCEELM 561

Query: 606 EATVGHFEHLLADSPEPLSFIVFVPDFRDPSPSALVKLEASHFKRKQVVVPAFEHEFRIG 665
           +A V HFE LL  SPEPLSFIVF+P++R+P   AL ++E S FKR Q+++PAFEHE+R G
Sbjct: 562 DAMVSHFERLLESSPEPLSFIVFIPEWREPPTPALTRMEQSRFKRHQLILPAFEHEYRSG 621

Query: 666 VQPFVTNKTDLNVKSMHGTLVVWLQNSAGFAKWTPTEDKVEKLLDAFR 713
            Q  +  K +++ K++H T V++LQN  GFAKW PT +++++L  A+R
Sbjct: 622 SQ-HICKKEEMHYKAVHNTAVLFLQNDPGFAKWAPTPERLQELSAAYR 668
May play a role in transcription elongation or in coupling transcription to pre-mRNA processing through its association with the phosphorylated C-terminal domain (CTD) of RNAPII largest subunit.
Homo sapiens (taxid: 9606)
>sp|P59114|PCIF1_MOUSE Phosphorylated CTD-interacting factor 1 OS=Mus musculus GN=Pcif1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query744
383861956728 PREDICTED: phosphorylated CTD-interactin 0.905 0.925 0.601 0.0
307208075733 Phosphorylated CTD-interacting factor 1 0.903 0.916 0.604 0.0
340726928756 PREDICTED: LOW QUALITY PROTEIN: phosphor 0.913 0.899 0.593 0.0
328789173756 PREDICTED: phosphorylated CTD-interactin 0.913 0.899 0.589 0.0
380018830756 PREDICTED: phosphorylated CTD-interactin 0.915 0.900 0.591 0.0
307182697735 Phosphorylated CTD-interacting factor 1 0.905 0.917 0.597 0.0
332031020734 Phosphorylated CTD-interacting factor 1 0.904 0.916 0.593 0.0
156553336763 PREDICTED: phosphorylated CTD-interactin 0.907 0.884 0.588 0.0
322803071733 hypothetical protein SINV_04150 [Solenop 0.903 0.916 0.591 0.0
242021221728 Phosphorylated CTD-interacting factor, p 0.916 0.936 0.587 0.0
>gi|383861956|ref|XP_003706450.1| PREDICTED: phosphorylated CTD-interacting factor 1 [Megachile rotundata] Back     alignment and taxonomy information
 Score =  880 bits (2273), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/748 (60%), Positives = 540/748 (72%), Gaps = 74/748 (9%)

Query: 1   MNEV-GGKHETPAPTTSWDSMSVPQGPPIPITHEN----------IQQVMVPVPIKMQPP 49
           MNEV GGK + P  T++W+++S        + H +          + QV+VP P+K+Q P
Sbjct: 1   MNEVSGGKQDIPN-TSTWETLSGQSASLSTMHHHHQSLQQDANTAVTQVIVPTPVKLQAP 59

Query: 50  PNLNPMMEHGNPMQQ-GPMTPHQGVQMG---GSYIDHELPPELIQQGWRKFWSKRENRPY 105
             LN     G+   Q G M     +  G   G++ + EL PEL QQGW+KFWSKRENRPY
Sbjct: 60  -MLNSTQTVGDHCSQLGHMQQSNLITQGTPPGTFPETELSPELQQQGWKKFWSKRENRPY 118

Query: 106 YWNRASGESLWDMP-QGSGFDPIGDPLGICAGPPPPHTPNMNMPPQ-PMKRRASEGMAMG 163
           +WN+ +GESLW +P     FDPI DPLGICA PP   + N  +PP   +KRRASE   + 
Sbjct: 119 FWNKLTGESLWVIPPLKPQFDPITDPLGICAVPPV--SGNGAIPPGGTLKRRASEDSVV- 175

Query: 164 APLPKKFILSGPWDLEIPTNVIILERAPTSMPQPHPEIELFRCNLTNKLRHLLQDMCHSR 223
            P  KKF+L+GPWDLEIPTNVII ERAP+++P  HPE E  RC L  KLR   Q++CH+R
Sbjct: 176 -PAAKKFVLAGPWDLEIPTNVIIYERAPSNLPHVHPETEALRCGLLAKLRQCYQELCHTR 234

Query: 224 EGIDAPHESFNRWLMERKVIDTGSDPLLPSQCYPEISPCMYREIMNDIPLKLKKPKYTGD 283
           E IDAP +SFNRWLMERKVID GSDPLLPSQC+PEIS  MYREIMNDIP+KL +PK+TGD
Sbjct: 235 ESIDAPKDSFNRWLMERKVIDCGSDPLLPSQCFPEISMSMYREIMNDIPIKLVRPKFTGD 294

Query: 284 ARKQLSKYAEAAKKLIESRNANSESRKVVKWNAEDTFLWLRKTVGATYDDFQERLNHLKT 343
           ARKQLS+YAEAAKK+IESR A+SESRKVVKWNAEDTF WLR+TVGAT+DDFQ+RL HLK 
Sbjct: 295 ARKQLSRYAEAAKKMIESRAASSESRKVVKWNAEDTFQWLRRTVGATFDDFQDRLAHLKR 354

Query: 344 QCQPHLTETVKDSVEKICLKIQHLSTEHAKKIRDKNSDLLTANGIQEPPP---PPSTLNS 400
           QCQPHLTETVK SVE ICLKI HLSTE+AKK++ KN+ +L  NG+    P   P ST   
Sbjct: 355 QCQPHLTETVKASVEGICLKIYHLSTEYAKKVKHKNNQILKDNGLGNVIPLGGPAST--Q 412

Query: 401 RKVWCYPIQFSTPSCRMPSIEYHPDKEQIMLRFQNDTVTVNSLHFQKLEHLYRYSCFDDK 460
           RKVWCYPIQFS P+ R+P ++Y P++EQ MLRF  DTV +N++H  KLEHLYRY+CFDDK
Sbjct: 413 RKVWCYPIQFSLPTSRLPQVDYLPEREQTMLRFHGDTVCINNMHLAKLEHLYRYNCFDDK 472

Query: 461 KFELFLPRVWCLLKRYTTFLGQVTAQQDSGLSTWPRNSCFDDKKFELFLPRVWCLLKRYT 520
           KFE+FLPRVWC+LKRY T+ G    Q                                  
Sbjct: 473 KFEMFLPRVWCMLKRYQTYFGINEGQ---------------------------------- 498

Query: 521 TFLGQVTAQSGKTQASLPGPVFECLNKHFGVTFECFASPLNCYFRQYCSMFPDTDSYFGS 580
                       TQ +LP  VFECL + FGVTFECFASPLNCYFRQYCS F DTDSYFGS
Sbjct: 499 -----------ATQMALPVTVFECLQRSFGVTFECFASPLNCYFRQYCSAFADTDSYFGS 547

Query: 581 RGPILDLKAVSGSFQAHPPYCEELMEATVGHFEHLLADSPEPLSFIVFVPDFRDPSPSAL 640
           RGP LD + VSGSFQA+PPYCEELMEA V HFE LLADS EPLSF+VF+P++RDP+P+AL
Sbjct: 548 RGPFLDFRPVSGSFQANPPYCEELMEAMVNHFERLLADSAEPLSFVVFLPEWRDPAPNAL 607

Query: 641 VKLEASHFKRKQVVVPAFEHEFRIGVQPFVTNKTDLNVKSMHGTLVVWLQNSAGFAKWTP 700
           +KLE+SHFKRKQVVVPA EHE+R G Q  +  K ++N+++ HGTLVVWLQN+AG A+W P
Sbjct: 608 IKLESSHFKRKQVVVPAMEHEYRHGFQ-HILPKGEVNIRAAHGTLVVWLQNTAGTARWGP 666

Query: 701 TEDKVEKLLDAFRPGRERERDKLELLSP 728
           TE++VE LL+A+RPGRERERD+ ELLSP
Sbjct: 667 TEERVEALLEAWRPGRERERDRQELLSP 694

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307208075|gb|EFN85606.1| Phosphorylated CTD-interacting factor 1 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|340726928|ref|XP_003401803.1| PREDICTED: LOW QUALITY PROTEIN: phosphorylated CTD-interacting factor 1-like [Bombus terrestris] gi|350421435|ref|XP_003492842.1| PREDICTED: LOW QUALITY PROTEIN: phosphorylated CTD-interacting factor 1-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|328789173|ref|XP_624144.2| PREDICTED: phosphorylated CTD-interacting factor 1-like [Apis mellifera] Back     alignment and taxonomy information
>gi|380018830|ref|XP_003693324.1| PREDICTED: phosphorylated CTD-interacting factor 1-like [Apis florea] Back     alignment and taxonomy information
>gi|307182697|gb|EFN69821.1| Phosphorylated CTD-interacting factor 1 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|332031020|gb|EGI70635.1| Phosphorylated CTD-interacting factor 1 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|156553336|ref|XP_001601122.1| PREDICTED: phosphorylated CTD-interacting factor 1-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|322803071|gb|EFZ23159.1| hypothetical protein SINV_04150 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|242021221|ref|XP_002431044.1| Phosphorylated CTD-interacting factor, putative [Pediculus humanus corporis] gi|212516273|gb|EEB18306.1| Phosphorylated CTD-interacting factor, putative [Pediculus humanus corporis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query744
FB|FBgn0037021 920 CG11399 [Drosophila melanogast 0.638 0.516 0.536 2.4e-214
UNIPROTKB|E1BR74707 PCIF1 "Uncharacterized protein 0.465 0.489 0.481 1.7e-105
UNIPROTKB|F1MJ19645 PCIF1 "Uncharacterized protein 0.422 0.486 0.515 2.8e-105
UNIPROTKB|Q9H4Z3704 PCIF1 "Phosphorylated CTD-inte 0.422 0.446 0.512 1.2e-104
UNIPROTKB|E2RGF5702 PCIF1 "Uncharacterized protein 0.422 0.447 0.512 1.5e-104
RGD|1310800704 Pcif1 "PDX1 C-terminal inhibit 0.422 0.446 0.512 4.6e-103
MGI|MGI:2443858706 Pcif1 "PDX1 C-terminal inhibit 0.422 0.444 0.509 1.5e-102
UNIPROTKB|F1SC59423 PCIF1 "Uncharacterized protein 0.331 0.583 0.528 7.2e-88
FB|FBgn0037021 CG11399 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1375 (489.1 bits), Expect = 2.4e-214, Sum P(2) = 2.4e-214
 Identities = 271/505 (53%), Positives = 347/505 (68%)

Query:    10 TPAPTTSWDSMSVPQGPPIPITHENIQQVMVPVPIKMQPPPNLNPMMEHG-NPMQQGPMT 68
             +P+PT    +++   GP +P   +N+       P+     P+  P   H  +P++    T
Sbjct:    67 SPSPTAGAPTVT---GPILP---DNLGVGAGSSPVASCSSPS-TPTKTHAPSPLESMGHT 119

Query:    69 PHQGVQMG-GSYIDHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGSGFDPI 127
             P     +G G Y   EL  EL+ QGWRKFWSKRENRPYYWN+ +GESLW+MP    FDP+
Sbjct:   120 PQGPPTLGPGGY-GEELTAELVNQGWRKFWSKRENRPYYWNKVTGESLWEMPGTRPFDPL 178

Query:   128 GDPLGIC-AGXXX----XXXXXXXXXXXXXKRRASEGMAM--------GAPLPKKFILSG 174
              DPLGIC AG                    KRR S+ M +        G P  KKF+L+G
Sbjct:   179 TDPLGICHAGGPTPIIPNMHQQQQHQHHHLKRRPSDDMHIHPNQHHMGGGPPMKKFVLAG 238

Query:   175 PWDLEIPTNVIILERAPTSMPQPHPEIELFRCNLTNKLRHLLQDMCHSREGIDAPHESFN 234
             PWDLE+ TN +I+ER PT +PQPHPE+E  R   T KL    +D+C  RE I AP +SFN
Sbjct:   239 PWDLEVCTNAVIVERPPTLLPQPHPEVEALRAAFTMKLLKTYEDLCMRRENIKAPRDSFN 298

Query:   235 RWLMERKVIDTGSDPLLPSQCYPEISPCMYREIMNDIPLKLKKPKYTGDARKQLSKYAEA 294
             RWLMERKVIDTG DPLLPS C PEIS  MYREIM+DIP+K+ KPK+TGDARKQLS+YAEA
Sbjct:   299 RWLMERKVIDTGCDPLLPSSCMPEISSSMYREIMSDIPIKIVKPKFTGDARKQLSRYAEA 358

Query:   295 AKKLIESRNANSESRKVVKWNAEDTFLWLRKTVGATYDDFQERLNHLKTQCQPHLTETVK 354
             AK++IESR+A +ES+KVVKWN EDTF WLR+TVGA+Y+DFQ+RL HLK QC+PHL ETVK
Sbjct:   359 AKQIIESRSAPAESKKVVKWNVEDTFQWLRRTVGASYEDFQDRLAHLKRQCEPHLVETVK 418

Query:   355 DSVEKICLKIQHLSTEHAKKIRDKNSDLLTANGIQEPPPPPSTLNSRKVWCYPIQFSTPS 414
              SVE +C+KI HLS +HA+KIR+++S LL  +GI EP PPP   + +KVWCYPIQF+ PS
Sbjct:   419 SSVETLCVKIYHLSADHARKIRERHSQLLKEHGIPEPTPPPPPPHLKKVWCYPIQFAVPS 478

Query:   415 CRMPSIEYHPDKEQIMLRF------QNDTVTVNSLHFQKLEHLYRYSCFDDKKFELFLPR 468
              RMP+IEY  D++ +++++      Q D   +N  + QKLE LYR++CFDDKKF+LF+ R
Sbjct:   479 PRMPTIEYLQDRDHMIIKYTPATINQPDAQYINLTYLQKLEQLYRHNCFDDKKFDLFIGR 538

Query:   469 VWCLLKRYTTFLGQ-VTAQQDSGLS 492
             VWCLLKRY TFLG  + + Q++ L+
Sbjct:   539 VWCLLKRYQTFLGNALNSSQEAELT 563
GO:0048190 "wing disc dorsal/ventral pattern formation" evidence=IGI
UNIPROTKB|E1BR74 PCIF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1MJ19 PCIF1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H4Z3 PCIF1 "Phosphorylated CTD-interacting factor 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RGF5 PCIF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1310800 Pcif1 "PDX1 C-terminal inhibiting factor 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:2443858 Pcif1 "PDX1 C-terminal inhibiting factor 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1SC59 PCIF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P59114PCIF1_MOUSENo assigned EC number0.44410.82120.8654yesN/A
Q9H4Z3PCIF1_HUMANNo assigned EC number0.44910.82120.8678yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query744
pfam12237175 pfam12237, PCIF1_WW, Phosphorylated CTD interactin 4e-72
cd0020131 cd00201, WW, Two conserved tryptophans domain; als 1e-04
pfam0039730 pfam00397, WW, WW domain 9e-04
smart0045633 smart00456, WW, Domain with 2 conserved Trp (W) re 0.002
>gnl|CDD|221479 pfam12237, PCIF1_WW, Phosphorylated CTD interacting factor 1 WW domain Back     alignment and domain information 
 Score =  231 bits (592), Expect = 4e-72
 Identities = 87/172 (50%), Positives = 106/172 (61%), Gaps = 5/172 (2%)

Query: 496 RNSCFDDKKFELFLPRVWCLLKRYTTFLGQVTAQSGKTQASLPGPVFECLNKHFGVTFEC 555
           R +  DD + E FL RV+CLL RY T  G      G  QA+LP  VF+ L   FGV+ EC
Sbjct: 7   RRTSRDDPEDEDFLFRVFCLLLRYDTIFGGEQEAEG-FQAALPEDVFDVLKDKFGVSCEC 65

Query: 556 FASPLNCYFRQYCSMFPDTDSYFGSRGPILDLKAVSGSFQAHPPYCEELMEATVGHFEHL 615
           FASPLN    QYCS FPDTD YFGS G   D K  SGSF+A+PP+ EELM+A   H E L
Sbjct: 66  FASPLNARLAQYCSAFPDTDKYFGSLGSFFDFKPSSGSFEANPPFDEELMDAMAEHLERL 125

Query: 616 L--ADSPEPLSFIVFVPDFRDPSPSALVKLEASHFKRKQVVVPAFEHEFRIG 665
           L  + S  PLSF+V VP++++  P A  KLE S F R+  V+ A EH +  G
Sbjct: 126 LDASKSTTPLSFVVIVPEWKE--PPAWSKLENSAFCRRDTVLLAKEHGYYDG 175

This domain family is found in bacteria and eukaryotes, and is approximately 180 amino acids in length. This domain is the WW domain of PCIF1. PCIF1 interacts with phosphorylated RNA polymerase II carboxy-terminal domain (CTD). The WW domain of PCIF1 can directly and preferentially bind to the phosphorylated CTD compared to the unphosphorylated CTD. PCIF1 binds to the hyperphosphorylated RNAP II (RNAP IIO) in vitro and in vivo. Double immunofluorescence labeling in HeLa cells demonstrated that PCIF1 and endogenous RNAP IIO are co-localized in the cell nucleus. Thus, PCIF1 may play a role in mRNA synthesis by modulating RNAP IIO activity. Length = 175
>gnl|CDD|238122 cd00201, WW, Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs Back     alignment and domain information
>gnl|CDD|215899 pfam00397, WW, WW domain Back     alignment and domain information
>gnl|CDD|197736 smart00456, WW, Domain with 2 conserved Trp (W) residues Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 744
PF12237176 PCIF1_WW: Phosphorylated CTD interacting factor 1 100.0
PF0039731 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp 97.75
smart0045632 WW Domain with 2 conserved Trp (W) residues. Also 97.61
cd0020131 WW Two conserved tryptophans domain; also known as 97.58
KOG3259|consensus163 96.57
PF05869181 Dam: DNA N-6-adenine-methyltransferase (Dam); Inte 95.55
TIGR01712166 phage_N6A_met phage N-6-adenine-methyltransferase. 88.68
PF12237176 PCIF1_WW: Phosphorylated CTD interacting factor 1 84.48
>PF12237 PCIF1_WW: Phosphorylated CTD interacting factor 1 WW domain; InterPro: IPR022035 This domain is found in bacteria and eukaryotes, and is approximately 180 amino acids in length Back     alignment and domain information 
Probab=100.00  E-value=2e-64  Score=490.16  Aligned_cols=158  Identities=59%  Similarity=1.080  Sum_probs=146.4

Q ss_pred             hhhhhHHHHhhhhhhhcccccccCCCccccCCChhHHHHHHhccCceeeeccCccccccccccCcCCCccccCCCCCCcc
Q psy2928         506 ELFLPRVWCLLKRYTTFLGQVTAQSGKTQASLPGPVFECLNKHFGVTFECFASPLNCYFRQYCSMFPDTDSYFGSRGPIL  585 (744)
Q Consensus       506 ~~F~~rvf~LL~RY~tl~G~~~~~g~G~QaAlP~~VFd~L~~~fgV~~EcFASPLN~~f~~FCSaFpDTD~~FGSlGSFF  585 (744)
                      ..|+.||||||+||+|++|++.+.|+|+|+|+|++||++|+++|||++|||||||||||++|||||||||.+|||+||||
T Consensus        17 ~~F~~~v~~lL~RY~tl~G~~~~~~~g~q~a~p~~vf~~L~~~f~v~~EcFASPlN~~~~~ycSaFpDtD~~FGS~GsFf   96 (176)
T PF12237_consen   17 QRFLSRVFCLLLRYQTLFGGQYQEGGGLQAALPPEVFDALHKRFGVSFECFASPLNCYFRQYCSAFPDTDAYFGSLGSFF   96 (176)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcCCCCcccccCCHHHHHHHHHHcCCCEEEecChhhhhHHHhcCcCcCccccccCCcchh
Confidence            34455555666677777777777899999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCceEECCCCcHHHHHHHHHHHHHHh--hcCCCCeEEEEEeeCCCCCChhHHhhhhhcCCcccceeecCCCCccc
Q psy2928         586 DLKAVSGSFQAHPPYCEELMEATVGHFEHLL--ADSPEPLSFIVFVPDFRDPSPSALVKLEASHFKRKQVVVPAFEHEFR  663 (744)
Q Consensus       586 df~p~sGSFE~NPPF~eelm~~m~~hie~lL--~~s~~pLSFVVVvP~W~D~~~~a~~~L~~S~fkR~~vvl~a~eH~Y~  663 (744)
                      +|.|++|+|||||||++++|++|++||+++|  +++++|||||||||.|+|++  +|++|++|+|+|++++|++++|+|+
T Consensus        97 ~f~p~~Gsfe~NPPF~~elm~~~~~h~~~~L~~~~~~~~LsFvvvvP~w~~~~--~~~~l~~S~~~r~~~~l~~~~h~y~  174 (176)
T PF12237_consen   97 DFEPVSGSFEANPPFDEELMERMVNHIERLLRAENSSEPLSFVVVVPEWRDPP--AWERLESSPYKRHHFVLPANEHGYR  174 (176)
T ss_pred             cccCCCCceeeCCCCCHHHHHHHHHHHHHHHHhccccCceEEEEEecCCCCcH--HHHHHhcCCcCccceEeecCccccc
Confidence            9999999999999999999999999999999  34899999999999999986  4999999999999999999999999


Q ss_pred             cC
Q psy2928         664 IG  665 (744)
Q Consensus       664 ~G  665 (744)
                      +|
T Consensus       175 ~G  176 (176)
T PF12237_consen  175 HG  176 (176)
T ss_pred             CC
Confidence            98

It is the WW domain of PCIF1. PCIF1 interacts with phosphorylated RNA polymerase II carboxy-terminal domain (CTD). The WW domain of PCIF1 can directly and preferentially bind to the phosphorylated CTD compared to the unphosphorylated CTD. PCIF1 binds to the hyperphosphorylated RNAP II (RNAP IIO) in vitro and in vivo. Double immunofluorescence labeling in HeLa cells demonstrated that PCIF1 and endogenous RNAP IIO are co-localized in the cell nucleus. Thus, PCIF1 may play a role in mRNA synthesis by modulating RNAP IIO activity.
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet Back     alignment and domain information
>smart00456 WW Domain with 2 conserved Trp (W) residues Back     alignment and domain information
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs Back     alignment and domain information
>KOG3259|consensus Back     alignment and domain information
>PF05869 Dam: DNA N-6-adenine-methyltransferase (Dam); InterPro: IPR008593 This family consists of several bacterial and phage DNA N-6-adenine-methyltransferase (Dam) like sequences [] Back     alignment and domain information
>TIGR01712 phage_N6A_met phage N-6-adenine-methyltransferase Back     alignment and domain information
>PF12237 PCIF1_WW: Phosphorylated CTD interacting factor 1 WW domain; InterPro: IPR022035 This domain is found in bacteria and eukaryotes, and is approximately 180 amino acids in length Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query744
2jx8_A52 Solution Structure Of Hpcif1 Ww Domain Length = 52 3e-09
>pdb|2JX8|A Chain A, Solution Structure Of Hpcif1 Ww Domain Length = 52 Back     alignment and structure 
Iteration: 1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 33/47 (70%)
Query: 84  LPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGSGFDPIGDP 130
           LP EL+  GW K WS+RENRPYY+NR + +SLW+MP     D I DP
Sbjct: 6   LPEELVHAGWEKCWSRRENRPYYFNRFTNQSLWEMPVLGQHDVISDP 52

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query744
2jx8_A52 Hpcif1, phosphorylated CTD-interacting factor 1; p 7e-19
2jv4_A54 Peptidyl-prolyl CIS/trans isomerase; ppiase domain 7e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
2dk1_A50 WW domain-binding protein 4; WBP-4, formin- bindin 2e-04
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens} Length = 52 Back     alignment and structure
 Score = 79.7 bits (196), Expect = 7e-19
 Identities = 27/49 (55%), Positives = 33/49 (67%)

Query: 82  HELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGSGFDPIGDP 130
             LP EL+  GW K WS+RENRPYY+NR + +SLW+MP     D I DP
Sbjct: 4   GSLPEELVHAGWEKCWSRRENRPYYFNRFTNQSLWEMPVLGQHDVISDP 52
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans} Length = 54 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 Length = 50 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query744
2jx8_A52 Hpcif1, phosphorylated CTD-interacting factor 1; p 99.3
1e0n_A27 Hypothetical protein; YJQ8WW domain, WW domain, sa 97.78
2jv4_A54 Peptidyl-prolyl CIS/trans isomerase; ppiase domain 97.4
1ywi_A41 Formin-binding protein 3; WW domain, class II, pro 97.34
2ysh_A40 GAS-7, growth-arrest-specific protein 7; WW domain 96.99
1e0l_A37 Formin binding protein; SH3 domain, WW domain, FBP 96.99
2ysi_A40 Transcription elongation regulator 1; Ca150, FBP28 96.91
1e0m_A37 Wwprototype; SH3 prototype, protein design, de nov 96.8
1wr7_A41 NEDD4-2; all-beta, ligase; NMR {Mus musculus} 96.69
1ymz_A43 CC45; artificial protein, computational design, un 96.63
2dk1_A50 WW domain-binding protein 4; WBP-4, formin- bindin 96.55
1wr3_A36 Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M 96.41
2kyk_A39 E3 ubiquitin-protein ligase itchy homolog; LMP2A, 96.27
2dmv_A43 Itchy homolog E3 ubiquitin protein ligase; WW doma 95.94
1wr4_A36 Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M 95.78
2l5f_A92 PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA 95.73
2ysf_A40 E3 ubiquitin-protein ligase itchy homolog; AIP4, N 95.53
2ysg_A40 Syntaxin-binding protein 4; synip, STXBP4, WW doma 95.52
2jxw_A75 WW domain-binding protein 4; WW domain containing 95.46
1o6w_A75 PRP40, PRE-mRNA processing protein PRP40; WW domai 95.34
2djy_A42 SMAD ubiquitination regulatory factor 2; beta shee 94.98
2l4j_A46 YES-associated protein 2 (YAP2); WW domain, medaka 94.91
2kpz_A49 E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV 94.89
2law_A38 Yorkie homolog; YAP, SMAD1, CDK, signal transducti 94.82
1i5h_W50 Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, 94.45
2l5f_A92 PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA 94.38
3lof_A113 Heat shock 70 kDa protein 1; structural genomics, 94.38
2ez5_W46 Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW doma 93.65
2ysc_A39 Amyloid beta A4 precursor protein-binding family B 93.23
2jxw_A75 WW domain-binding protein 4; WW domain containing 92.94
2dk7_A73 Transcription elongation regulator 1; structural g 92.42
2zaj_A49 Membrane-associated guanylate kinase, WW and PDZ d 92.21
2p32_A120 Heat shock 70 kDa protein A; three-helix bundle, c 92.12
2kxq_A90 E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG 91.81
2ysd_A57 Membrane-associated guanylate kinase, WW and PDZ d 91.62
2ho2_A38 Fe65 protein, amyloid beta A4 protein-binding fami 91.54
1tk7_A88 CG4244-PB; WW domain, notch, signaling protein; NM 91.32
2dwv_A49 Salvador homolog 1 protein; WW domain, dimer, stru 90.91
2ysb_A49 Salvador homolog 1 protein; WW domain, structural 90.51
1o6w_A75 PRP40, PRE-mRNA processing protein PRP40; WW domai 90.28
2jmf_A53 E3 ubiquitin-protein ligase suppressor of deltex; 89.69
1tk7_A88 CG4244-PB; WW domain, notch, signaling protein; NM 89.23
3tc5_A166 Peptidyl-prolyl CIS-trans isomerase NIMA-interact; 89.21
2yse_A60 Membrane-associated guanylate kinase, WW and PDZ d 88.85
1wmv_A54 WWOX, WW domain containing oxidoreductase; all-bet 88.8
1ud0_A113 HSC70, 70 kDa heat-shock-like protein; chaperone; 87.84
1yw5_A177 Peptidyl prolyl CIS/trans isomerase; WW-domain, pp 87.41
2qar_B93 Telsam domain; polymer, crystallization modules, s 83.7
2kxq_A90 E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG 83.23
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens} Back     alignment and structure
Probab=99.30  E-value=3.9e-13  Score=107.76  Aligned_cols=50  Identities=54%  Similarity=1.077  Sum_probs=46.5

Q ss_pred             CCCCCHHHHHHhHHHHhhcccCCCcceeccCCcccccCCCCCCCCCCCCC
Q psy2928          81 DHELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGSGFDPIGDP  130 (744)
Q Consensus        81 ~~~l~~el~q~gw~k~wskre~rpy~~nk~t~~slwe~p~~~~~d~i~dp  130 (744)
                      .++|+++.|-.||++.||+..+|+||||..||+|.||.|...+|||+|||
T Consensus         3 ~~~~~~~~LP~gW~~~~~~~~gr~YY~N~~T~~SqWe~P~~~~~dpl~~~   52 (52)
T 2jx8_A            3 LGSLPEELVHAGWEKCWSRRENRPYYFNRFTNQSLWEMPVLGQHDVISDP   52 (52)
T ss_dssp             ---CCHHHHHHTCCEEEETTTTEEEEEETTTTEEESSCCCCTTSCCCCCC
T ss_pred             cccCCcCCCCcCcEEEEccccCCEEEEECCCCCEEeCCCCCCCCCCCCCC
Confidence            68999999999999999999999999999999999999999999999998
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 Back     alignment and structure
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans} Back     alignment and structure
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A Back     alignment and structure
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Back     alignment and structure
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A Back     alignment and structure
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1 Back     alignment and structure
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1 Back     alignment and structure
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus} Back     alignment and structure
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1 Back     alignment and structure
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 Back     alignment and structure
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} Back     alignment and structure
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens} Back     alignment and structure
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A* Back     alignment and structure
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens} Back     alignment and structure
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 Back     alignment and structure
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Back     alignment and structure
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens} Back     alignment and structure
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1 Back     alignment and structure
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A Back     alignment and structure
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes} Back     alignment and structure
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A* Back     alignment and structure
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens} Back     alignment and structure
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A* Back     alignment and structure
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens} Back     alignment and structure
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A Back     alignment and structure
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster} Back     alignment and structure
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 Back     alignment and structure
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens} Back     alignment and structure
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens} Back     alignment and structure
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans} Back     alignment and structure
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A* Back     alignment and structure
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 Back     alignment and structure
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A Back     alignment and structure
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1 Back     alignment and structure
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1 Back     alignment and structure
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1 Back     alignment and structure
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A Back     alignment and structure
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1 Back     alignment and structure
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ... Back     alignment and structure
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens} Back     alignment and structure
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1 Back     alignment and structure
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans} Back     alignment and structure
>2qar_B Telsam domain; polymer, crystallization modules, sterIle alpha motif, hydro regulator; 2.40A {Escherichia coli} Back     alignment and structure
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 744
d1pina134 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Ho 2e-05
d1edqa373 d.26.3.1 (A:444-516) Chitinase A {Serratia marcesc 7e-05
d2dk1a138 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP 2e-04
d1o6wa246 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's 2e-04
d2rm0w137 b.72.1.1 (W:1-37) Formin binding protein FBP28 dom 0.001
d1ywia128 b.72.1.1 (A:15-42) Huntingtin-interacting protein 0.002
d1o6wa129 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's y 0.002
>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]} Length = 34 Back     information, alignment and structure

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Mitotic rotamase PIN1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (94), Expect = 2e-05
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 5/39 (12%)

Query: 83  ELPPELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQG 121
           +LPP     GW K  S+   R YY+N  +  S W+ P G
Sbjct: 1   KLPP-----GWEKRMSRSSGRVYYFNHITNASQWERPSG 34
>d1edqa3 d.26.3.1 (A:444-516) Chitinase A {Serratia marcescens [TaxId: 615]} Length = 73 Back     information, alignment and structure
>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]} Length = 38 Back     information, alignment and structure
>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 46 Back     information, alignment and structure
>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]} Length = 37 Back     information, alignment and structure
>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 28 Back     information, alignment and structure
>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 29 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query744
d1o6wa246 Splicing factor prp40 {Baker's yeast (Saccharomyce 97.75
d2rm0w137 Formin binding protein FBP28 domain {Domestic mous 97.47
d2dk1a138 WW domain-binding protein 4, WBP4 {Human (Homo sap 97.42
d1ywia128 Huntingtin-interacting protein HYPA/FBP11 {Human ( 97.15
d1o6wa129 Splicing factor prp40 {Baker's yeast (Saccharomyce 97.07
d1pina134 Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId 96.92
d1i5hw_50 Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus n 95.65
d1ud0a_84 DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} 95.44
d1tk7a145 Suppressor of deltex (Cg4244-pb) {Fruit fly (Droso 95.22
d1jmqa_46 Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606 91.54
d2jmfa133 Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Dr 89.78
>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Splicing factor prp40
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.75  E-value=1.8e-06  Score=66.43  Aligned_cols=35  Identities=26%  Similarity=0.661  Sum_probs=31.3

Q ss_pred             HHHHHhHHHHhhcccCCCcceeccCCcccccCCCCC
Q psy2928          87 ELIQQGWRKFWSKRENRPYYWNRASGESLWDMPQGS  122 (744)
Q Consensus        87 el~q~gw~k~wskre~rpy~~nk~t~~slwe~p~~~  122 (744)
                      .|-+.||..+.+. ++|+||||..||||-||.|...
T Consensus        10 ~l~~~~W~e~~~~-~Gr~YYyN~~T~es~We~P~~~   44 (46)
T d1o6wa2          10 LLRENGWKAAKTA-DGKVYYYNPTTRETSWTIPAFE   44 (46)
T ss_dssp             HHHHHTCEEEECT-TCCEEEEETTTTEEESSCCCCC
T ss_pred             HhccCCCeEEECC-CCCEEEEECCCCCEecCCCccc
Confidence            3568999999997 8999999999999999999764
>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure