Psyllid ID: psy320

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
Protein Sequence
MHTNYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLNHQDFRPDPRVDPTSIKMYTVAITNN
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHcccccccEEccccEEEEcccccEEEEEEcccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHccccEEEEHHcccccccccccccccHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHccHccEccccEEEEEEccccEEEEEEEEccccEHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcEEcccccHHHEEccEccccEEEEcccccHHHHHHccccccccccccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHccccccccccccccccccEEEEEEEEEcc
Coil and Loop (DISEMBL)
MHTNYATNLIKTLIEIQKHPSDKLMKLLDHFQvtgingthVCTVTEIMAECLCNYMIrqkfqpapLVVAKIIVNQILEGLNHLHtkhnlvhtsikpesiffkADHVYIMTLINIQQatthqechdqqsssktkSKIFCEILEQCrlnqdfrldprvdptsikMYTTFCEILEQCRlnhqdfrpdprvdptsiKMYTVAITNN
Flexible Loop (DISEMBL)
mhtnyatnLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEqcrlnqdfrldprvdpTSIKMYTTFCEILEQCRLNHqdfrpdprvdptsikMYTVAITNN
Low Complexity Region (SEG)
MHTNYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLNHQDFRPDPRVDPTSIKMYTVAITNN
Disordered region (IsUnstruct)
****YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATT***************KIFCEILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLNHQDF**********IKMYTV*****
Disordered Region (DISOPRED)
MHTNYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTL***********************************NQDFRLDPRVDPTSIKMYTTFCEILEQCRL*******************TV*****
Disordered Region (DISEMBL)
MHTNYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQ****************KSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLNHQDFRPDPRVDPTSIKMYTVAITNN
Disordered Region (DISPRO)
MHTNYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQEC**********SKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLNHQDFRPDPRVDPTSIKMYTVAITNN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MHTNYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLNHQDFRPDPRVDPTSIKMYTVAITNN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	202	2.2.26 [Sep-21-2011]
Q9Z0G2	565	SRSF protein kinase 3 OS=	yes	N/A	0.683	0.244	0.365	5e-18
Q9UPE1	567	SRSF protein kinase 3 OS=	yes	N/A	0.712	0.253	0.344	2e-17
B8Y466	566	SRSF protein kinase 3 OS=	yes	N/A	0.683	0.243	0.358	3e-17
O70551	648	SRSF protein kinase 1 OS=	no	N/A	0.544	0.169	0.373	3e-17
Q96SB4	655	SRSF protein kinase 1 OS=	no	N/A	0.544	0.167	0.373	6e-17
Q5RD27	655	SRSF protein kinase 1 OS=	no	N/A	0.544	0.167	0.373	7e-17
P78362	688	SRSF protein kinase 2 OS=	no	N/A	0.529	0.155	0.366	3e-16
O54781	681	SRSF protein kinase 2 OS=	no	N/A	0.529	0.157	0.366	3e-16
Q61IS6	1132	Serine/threonine-protein	N/A	N/A	0.490	0.087	0.384	6e-12
Q03563	1003	Serine/threonine-protein	no	N/A	0.490	0.098	0.375	1e-11

>sp|Q9Z0G2|SRPK3_MOUSE SRSF protein kinase 3 OS=Mus musculus GN=Srpk3 PE=2 SV=1

 Score = 90.9 bits (224), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 81/145 (55%), Gaps = 7/145 (4%)

Query: 2   HTNYATNLIKTLIEIQ-KHPSDK----LMKLLDHFQVTGINGTHVCTVTEIMAECLCNYM 56
           +T  A + IK L  ++   PSD     +++L+D F+++G+NG HVC V E++   L  ++
Sbjct: 115 YTETAVDEIKLLKCVRDSDPSDPKRETIVQLIDDFRISGVNGVHVCMVLEVLGHQLLKWI 174

Query: 57  IRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQ 116
           I+  +Q  P+   K IV Q+L GL++LHTK  ++HT IKPE+I       YI  L    +
Sbjct: 175 IKSNYQGLPVPCVKSIVRQVLHGLDYLHTKCKIIHTDIKPENILLCVGDAYIRRL--AAE 232

Query: 117 ATTHQECHDQQSSSKTKSKIFCEIL 141
           AT  Q+   Q  S  T S    E+L
Sbjct: 233 ATEWQQSGAQPPSRSTVSTAPQEVL 257

Serine/arginine-rich protein-specific kinase which specifically phosphorylates its substrates at serine residues located in regions rich in arginine/serine dipeptides, known as RS domains. Phosphorylates the SR splicing factor SRSF1 and the lamin-B receptor (LBR) in vitro. Required for normal muscle development.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9UPE1|SRPK3_HUMAN SRSF protein kinase 3 OS=Homo sapiens GN=SRPK3 PE=2 SV=2

 Score = 88.6 bits (218), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 83/151 (54%), Gaps = 7/151 (4%)

Query: 2   HTNYATNLIKTLIEIQ-KHPSDK----LMKLLDHFQVTGINGTHVCTVTEIMAECLCNYM 56
           +T  A + IK L  ++   PSD     +++L+D F+++G+NG HVC V E++   L  ++
Sbjct: 116 YTETAVDEIKLLKCVRDSDPSDPKRETIVQLIDDFRISGVNGVHVCMVLEVLGHQLLKWI 175

Query: 57  IRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQ 116
           I+  +Q  P+   K IV Q+L GL++LHTK  ++HT IKPE+I       YI  L    +
Sbjct: 176 IKSNYQGLPVPCVKSIVRQVLHGLDYLHTKCKIIHTDIKPENILLCVGDAYIRRL--AAE 233

Query: 117 ATTHQECHDQQSSSKTKSKIFCEILEQCRLN 147
           AT  Q+      S    S    E+L+  +L+
Sbjct: 234 ATEWQQAGAPPPSRSIVSTAPQEVLQTGKLS 264

Serine/arginine-rich protein-specific kinase which specifically phosphorylates its substrates at serine residues located in regions rich in arginine/serine dipeptides, known as RS domains. Phosphorylates the SR splicing factor SRSF1 and the lamin-B receptor (LBR) in vitro. Required for normal muscle development.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|B8Y466|SRPK3_PIG SRSF protein kinase 3 OS=Sus scrofa GN=SRPK3 PE=2 SV=1

 Score = 88.6 bits (218), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/145 (35%), Positives = 80/145 (55%), Gaps = 7/145 (4%)

Query: 2   HTNYATNLIKTLIEIQ-KHPSDK----LMKLLDHFQVTGINGTHVCTVTEIMAECLCNYM 56
           +T  A + IK L  ++   PSD     +++L+D F+++G+NG HVC V E++   L  ++
Sbjct: 116 YTETAVDEIKLLKCVRDSDPSDPKRETIVQLIDDFRISGVNGVHVCMVLEVLGHQLLKWI 175

Query: 57  IRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQ 116
           I+  +Q  P+   K IV Q+L GL++LHTK  ++HT IKPE+I       YI  L    +
Sbjct: 176 IKSNYQGLPVPCVKSIVRQVLHGLDYLHTKCKIIHTDIKPENILLCVGDAYIRRL--AAE 233

Query: 117 ATTHQECHDQQSSSKTKSKIFCEIL 141
           AT  Q+      S  T S    E+L
Sbjct: 234 ATEWQQSGAPPPSRSTVSTAPQEVL 258

Serine/arginine-rich protein-specific kinase which specifically phosphorylates its substrates at serine residues located in regions rich in arginine/serine dipeptides, known as RS domains. Phosphorylates the SR splicing factor SRSF1 and the lamin-B receptor (LBR) in vitro. Required for normal muscle development.

Sus scrofa (taxid: 9823)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O70551|SRPK1_MOUSE SRSF protein kinase 1 OS=Mus musculus GN=Srpk1 PE=1 SV=2

 Score = 88.2 bits (217), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/115 (37%), Positives = 72/115 (62%), Gaps = 5/115 (4%)

Query: 2   HTNYATNLIKTLIEIQKH-PSDK----LMKLLDHFQVTGINGTHVCTVTEIMAECLCNYM 56
           +T  A + I+ L  ++   P+D     +++LLD F+++G+NGTH+C V E++   L  ++
Sbjct: 117 YTETALDEIRLLKSVRNSDPNDPNGEMVVQLLDDFKISGVNGTHICMVFEVLGHHLLKWI 176

Query: 57  IRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTL 111
           I+  +Q  PL   K I+ Q+L+GL++LHTK  ++HT IKPE+I    +  YI  L
Sbjct: 177 IKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLSVNEQYIRRL 231

Serine/arginine-rich protein-specific kinase which specifically phosphorylates its substrates at serine residues located in regions rich in arginine/serine dipeptides, known as RS domains and is involved in the phosphorylation of SR splicing factors and the regulation of splicing. Plays a central role in the regulatory network for splicing, controlling the intranuclear distribution of splicing factors in interphase cells and the reorganization of nuclear speckles during mitosis. Can influence additional steps of mRNA maturation, as well as other cellular activities, such as chromatin reorganization in somatic and sperm cells and cell cycle progression. Phosphorylates SFRS2, ZRSR2, LBR and PRM1. Phosphorylates SRSF1 using a directional (C-terminal to N-terminal) and a dual-track mechanism incorporating both processive phosphorylation (in which the kinase stays attached to the substrate after each round of phosphorylation) and distributive phosphorylation steps (in which the kinase and substrate dissociate after each phosphorylation event). The RS domain of SRSF1 binds first to a docking groove in the large lobe of the kinase domain of SRPK1. This induces certain structural changes in SRPK1 and/or RRM2 domain of SRSF1, allowing RRM2 to bind the kinase and initiate phosphorylation. The cycles continue for several phosphorylation steps in a processive manner (steps 1-8) until the last few phosphorylation steps (approximately steps 9-12). During that time, a mechanical stress induces the unfolding of the beta-4 motif in RRM2, which then docks at the docking groove of SRPK1. This also signals RRM2 to begin to dissociate, which facilitates SRSF1 dissociation after phosphorylation is completed. Can mediate hepatitis B virus (HBV) core protein phosphorylation. It plays a negative role in the regulation of HBV replication through a mechanism not involving the phosphorylation of the core protein but by reducing the packaging efficiency of the pregenomic RNA (pgRNA) without affecting the formation of the viral core particles. Can induce splicing of exon 10 in MAPT/TAU.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q96SB4|SRPK1_HUMAN SRSF protein kinase 1 OS=Homo sapiens GN=SRPK1 PE=1 SV=2

 Score = 87.4 bits (215), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 43/115 (37%), Positives = 72/115 (62%), Gaps = 5/115 (4%)

Query: 2   HTNYATNLIKTLIEIQKH-PSDK----LMKLLDHFQVTGINGTHVCTVTEIMAECLCNYM 56
           +T  A + I+ L  ++   P+D     +++LLD F+++G+NGTH+C V E++   L  ++
Sbjct: 117 YTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHICMVFEVLGHHLLKWI 176

Query: 57  IRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTL 111
           I+  +Q  PL   K I+ Q+L+GL++LHTK  ++HT IKPE+I    +  YI  L
Sbjct: 177 IKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLSVNEQYIRRL 231

Serine/arginine-rich protein-specific kinase which specifically phosphorylates its substrates at serine residues located in regions rich in arginine/serine dipeptides, known as RS domains and is involved in the phosphorylation of SR splicing factors and the regulation of splicing. Plays a central role in the regulatory network for splicing, controlling the intranuclear distribution of splicing factors in interphase cells and the reorganization of nuclear speckles during mitosis. Can influence additional steps of mRNA maturation, as well as other cellular activities, such as chromatin reorganization in somatic and sperm cells and cell cycle progression. Isoform 2 phosphorylates SFRS2, ZRSR2, LBR and PRM1. Isoform 2 phosphorylates SRSF1 using a directional (C-terminal to N-terminal) and a dual-track mechanism incorporating both processive phosphorylation (in which the kinase stays attached to the substrate after each round of phosphorylation) and distributive phosphorylation steps (in which the kinase and substrate dissociate after each phosphorylation event). The RS domain of SRSF1 binds first to a docking groove in the large lobe of the kinase domain of SRPK1. This induces certain structural changes in SRPK1 and/or RRM2 domain of SRSF1, allowing RRM2 to bind the kinase and initiate phosphorylation. The cycles continue for several phosphorylation steps in a processive manner (steps 1-8) until the last few phosphorylation steps (approximately steps 9-12). During that time, a mechanical stress induces the unfolding of the beta-4 motif in RRM2, which then docks at the docking groove of SRPK1. This also signals RRM2 to begin to dissociate, which facilitates SRSF1 dissociation after phosphorylation is completed. Isoform 2 can mediate hepatitis B virus (HBV) core protein phosphorylation. It plays a negative role in the regulation of HBV replication through a mechanism not involving the phosphorylation of the core protein but by reducing the packaging efficiency of the pregenomic RNA (pgRNA) without affecting the formation of the viral core particles. Isoform 1 and isoform 2 can induce splicing of exon 10 in MAPT/TAU. The ratio of isoform 1/isoform 2 plays a decisive role in determining cell fate in K562 leukaemic cell line: isoform 2 favors proliferation where as isoform 1 favors differentiation.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q5RD27|SRPK1_PONAB SRSF protein kinase 1 OS=Pongo abelii GN=SRPK1 PE=2 SV=2

 Score = 87.0 bits (214), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 43/115 (37%), Positives = 72/115 (62%), Gaps = 5/115 (4%)

Query: 2   HTNYATNLIKTLIEIQKH-PSDK----LMKLLDHFQVTGINGTHVCTVTEIMAECLCNYM 56
           +T  A + I+ L  ++   P+D     +++LLD F+++G+NGTH+C V E++   L  ++
Sbjct: 117 YTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHICMVFEVLGHHLLKWI 176

Query: 57  IRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTL 111
           I+  +Q  PL   K I+ Q+L+GL++LHTK  ++HT IKPE+I    +  YI  L
Sbjct: 177 IKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLSVNEQYIRRL 231

Serine/arginine-rich protein-specific kinase which specifically phosphorylates its substrates at serine residues located in regions rich in arginine/serine dipeptides, known as RS domains and is involved in the phosphorylation of SR splicing factors and the regulation of splicing. Plays a central role in the regulatory network for splicing, controlling the intranuclear distribution of splicing factors in interphase cells and the reorganization of nuclear speckles during mitosis. Can influence additional steps of mRNA maturation, as well as other cellular activities, such as chromatin reorganization in somatic and sperm cells and cell cycle progression. Phosphorylates SFRS2, ZRSR2, LBR and PRM1. Phosphorylates SRSF1 using a directional (C-terminal to N-terminal) and a dual-track mechanism incorporating both processive phosphorylation (in which the kinase stays attached to the substrate after each round of phosphorylation) and distributive phosphorylation steps (in which the kinase and substrate dissociate after each phosphorylation event). The RS domain of SRSF1 binds first to a docking groove in the large lobe of the kinase domain of SRPK1. This induces certain structural changes in SRPK1 and/or RRM2 domain of SRSF1, allowing RRM2 to bind the kinase and initiate phosphorylation. The cycles continue for several phosphorylation steps in a processive manner (steps 1-8) until the last few phosphorylation steps (approximately steps 9-12). During that time, a mechanical stress induces the unfolding of the beta-4 motif in RRM2, which then docks at the docking groove of SRPK1. This also signals RRM2 to begin to dissociate, which facilitates SRSF1 dissociation after phosphorylation is completed. Can mediate hepatitis B virus (HBV) core protein phosphorylation. It plays a negative role in the regulation of HBV replication through a mechanism not involving the phosphorylation of the core protein but by reducing the packaging efficiency of the pregenomic RNA (pgRNA) without affecting the formation of the viral core particles. Can induce splicing of exon 10 in MAPT/TAU.

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P78362|SRPK2_HUMAN SRSF protein kinase 2 OS=Homo sapiens GN=SRPK2 PE=1 SV=3

 Score = 84.7 bits (208), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/112 (36%), Positives = 71/112 (63%), Gaps = 5/112 (4%)

Query: 2   HTNYATNLIKTLIEIQKH-PSDK----LMKLLDHFQVTGINGTHVCTVTEIMAECLCNYM 56
           +T  A + IK L  +++  PSD     +++L+D F+++G+NG HVC V E++   L  ++
Sbjct: 118 YTETALDEIKLLKCVRESDPSDPNKDMVVQLIDDFKISGMNGIHVCMVFEVLGHHLLKWI 177

Query: 57  IRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYI 108
           I+  +Q  P+   K I+ Q+L+GL++LH+K  ++HT IKPE+I    D  Y+
Sbjct: 178 IKSNYQGLPVRCVKSIIRQVLQGLDYLHSKCKIIHTDIKPENILMCVDDAYV 229

Serine/arginine-rich protein-specific kinase which specifically phosphorylates its substrates at serine residues located in regions rich in arginine/serine dipeptides, known as RS domains and is involved in the phosphorylation of SR splicing factors and the regulation of splicing. Promotes neuronal apoptosis by up-regulating cyclin-D1 (CCND1) expression. This is done by the phosphorylation of SRSF2, leading to the suppression of p53/TP53 phosphorylation thereby relieving the repressive effect of p53/TP53 on cyclin-D1 (CCND1) expression. Phosphorylates ACIN1, and redistributes it from the nuclear speckles to the nucleoplasm, resulting in cyclin A1 but not cyclin A2 up-regulation. Plays an essential role in splicesomal B complex formation via the phosphorylation of DDX23/PRP28. Can mediate hepatitis B virus (HBV) core protein phosphorylation. Plays a negative role in the regulation of HBV replication through a mechanism not involving the phosphorylation of the core protein but by reducing the packaging efficiency of the pregenomic RNA (pgRNA) without affecting the formation of the viral core particles.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O54781|SRPK2_MOUSE SRSF protein kinase 2 OS=Mus musculus GN=Srpk2 PE=1 SV=2

 Score = 84.7 bits (208), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/112 (36%), Positives = 71/112 (63%), Gaps = 5/112 (4%)

Query: 2   HTNYATNLIKTLIEIQKH-PSDK----LMKLLDHFQVTGINGTHVCTVTEIMAECLCNYM 56
           +T  A + IK L  +++  PSD     +++L+D F+++G+NG HVC V E++   L  ++
Sbjct: 116 YTETALDEIKLLKCVRESDPSDPNKDMVVQLIDDFKISGMNGIHVCMVFEVLGHHLLKWI 175

Query: 57  IRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYI 108
           I+  +Q  P+   K I+ Q+L+GL++LH+K  ++HT IKPE+I    D  Y+
Sbjct: 176 IKSNYQGLPVRCVKSIIRQVLQGLDYLHSKCKIIHTDIKPENILMCVDDAYV 227

Serine/arginine-rich protein-specific kinase which specifically phosphorylates its substrates at serine residues located in regions rich in arginine/serine dipeptides, known as RS domains and is involved in the phosphorylation of SR splicing factors and the regulation of splicing. Promotes neuronal apoptosis by up-regulating cyclin-D1 (CCND1) expression. This is done by the phosphorylation of SRSF2, leading to the suppression of p53/TP53 phosphorylation thereby relieving the repressive effect of p53/TP53 on cyclin-D1 (CCND1) expression. Phosphorylates ACIN1, and redistributes it from the nuclear speckles to the nucleoplasm, resulting in cyclin A1 but not cyclin A2 up-regulation. Plays an essential role in splicesomal B complex formation via the phosphorylation of DDX23/PRP28.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q61IS6|SPK1_CAEBR Serine/threonine-protein kinase spk-1 OS=Caenorhabditis briggsae GN=spk-1 PE=3 SV=2

 Score = 70.9 bits (172), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 40/104 (38%), Positives = 60/104 (57%), Gaps = 5/104 (4%)

Query: 2   HTNYATNLIKTLIEIQ-KHPSD----KLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYM 56
           +T  A + IK L+ ++   P D    K+++LLD F VTGING HV  V E++   L   +
Sbjct: 532 YTEAALDEIKLLLSVRGADPEDTGCHKVVQLLDEFTVTGINGQHVAMVFEVLGCNLLKLI 591

Query: 57  IRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIF 100
           IR  ++   L   + I  QILE L ++H K  ++HT IKPE++ 
Sbjct: 592 IRSNYRGLHLEQVRKICKQILEALRYMHEKCGIIHTDIKPENVL 635

Required for embryogenesis and germline development in both adult hermaphrodites and males. SR-protein kinase (SRPK) that binds directly to and phosphorylates RS domains.

Caenorhabditis briggsae (taxid: 6238)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q03563|SPK1_CAEEL Serine/threonine-protein kinase spk-1 OS=Caenorhabditis elegans GN=spk-1 PE=2 SV=3

 Score = 70.1 bits (170), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/104 (37%), Positives = 61/104 (58%), Gaps = 5/104 (4%)

Query: 2   HTNYATNLIKTLIEIQK-HPSD----KLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYM 56
           +T  A + IK L+ ++   P+D    K+++LLD F VTGING HV  V E++   L   +
Sbjct: 459 YTEAALDEIKLLLSVRSADPNDIGCHKVVQLLDEFTVTGINGQHVAMVFEVLGCNLLKLI 518

Query: 57  IRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIF 100
           IR  ++   L   + I  Q+LE L ++H K  ++HT IKPE++ 
Sbjct: 519 IRSNYRGLHLEQVRKICRQVLEALGYMHEKCGIIHTDIKPENVL 562

Required for embryogenesis and germline development in both adult hermaphrodites and males. SR-protein kinase (SRPK) that binds directly to and phosphorylates the RS domain of rsp-3/CeSF2 in vitro.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
410899527	650	PREDICTED: SRSF protein kinase 1-like [T	0.544	0.169	0.391	2e-17
123703035	640	serine/arginine-rich protein specific ki	0.544	0.171	0.391	4e-17
427782029	644	Putative serine/threonine protein kinase	0.544	0.170	0.373	4e-17
326669880	691	PREDICTED: serine/threonine-protein kina	0.544	0.159	0.382	6e-17
348510277	563	PREDICTED: serine/threonine-protein kina	0.445	0.159	0.433	1e-16
410898968	805	PREDICTED: SRSF protein kinase 3-like [T	0.544	0.136	0.391	1e-16
321478559	634	hypothetical protein DAPPUDRAFT_303260 [	0.445	0.141	0.466	1e-16
47228750	731	unnamed protein product [Tetraodon nigro	0.544	0.150	0.373	1e-16
321478543	589	hypothetical protein DAPPUDRAFT_40922 [D	0.445	0.152	0.466	1e-16
348521348	647	PREDICTED: serine/threonine-protein kina	0.544	0.170	0.373	1e-16

>gi|410899527|ref|XP_003963248.1| PREDICTED: SRSF protein kinase 1-like [Takifugu rubripes]

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/115 (39%), Positives = 72/115 (62%), Gaps = 5/115 (4%)

Query: 2   HTNYATNLIKTLIEIQKH-PSDK----LMKLLDHFQVTGINGTHVCTVTEIMAECLCNYM 56
           +T  A + IK L  ++   P+D     +++LLD F+++G+NGTHVC V E++   L  ++
Sbjct: 116 YTETAVDEIKLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHVCMVFEVLGHHLLKWI 175

Query: 57  IRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTL 111
           I+  +Q  PL   K I+ Q+L+GL++LHTK  ++HT IKPE+I    D  Y+  L
Sbjct: 176 IKSNYQGLPLPCVKSIIRQVLQGLDYLHTKCQIIHTDIKPENILMSVDQAYVRKL 230

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|123703035|ref|NP_001074138.1| serine/arginine-rich protein specific kinase 1b [Danio rerio] gi|120538418|gb|AAI29461.1| Serine/arginine-rich protein specific kinase 1b [Danio rerio]

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 45/115 (39%), Positives = 73/115 (63%), Gaps = 5/115 (4%)

Query: 2   HTNYATNLIKTLIEI----QKHPS-DKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYM 56
           +T  A + IK L  +    Q  PS +K+++LLD F+++G+NGTHVC V E++   L  ++
Sbjct: 114 YTETALDEIKLLKAVRNTDQNDPSREKVVQLLDDFKISGVNGTHVCMVFEVLGHHLLKWI 173

Query: 57  IRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTL 111
           ++  +Q  PL   K I+ Q+L+GL++LHTK  ++HT IKPE+I    +  Y+  L
Sbjct: 174 LKSNYQGLPLPCVKSIIRQVLQGLDYLHTKCKIIHTDIKPENILMDVNEAYVKRL 228

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|427782029|gb|JAA56466.1| Putative serine/threonine protein kinase [Rhipicephalus pulchellus]

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/115 (37%), Positives = 71/115 (61%), Gaps = 5/115 (4%)

Query: 2   HTNYATNLIKTLIEIQKHPSD-----KLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYM 56
           +T+ A + IK L  ++   +D     ++++LLD F+++G+NGTH+C V E++   L   +
Sbjct: 115 YTDTALDEIKLLKAVRDSDTDDTCRERVVQLLDDFKISGVNGTHMCMVFEVLGHNLLKLI 174

Query: 57  IRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTL 111
           IR  +Q  PL   + I+ Q+LEGL +LH+K  ++HT IKPE+I    D  Y+  L
Sbjct: 175 IRSNYQGIPLPNVRTIIRQVLEGLEYLHSKCQIIHTDIKPENILIAVDDAYVRKL 229

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|326669880|ref|XP_694973.5| PREDICTED: serine/threonine-protein kinase SRPK3-like [Danio rerio]

 Score = 92.8 bits (229), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 44/115 (38%), Positives = 74/115 (64%), Gaps = 5/115 (4%)

Query: 2   HTNYATNLIKTLIEIQ-KHPSD----KLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYM 56
           +T  A + IK L  ++   P+D    +L++L+D F+++G+NG HVC V E++   L  ++
Sbjct: 229 YTETALDEIKLLKCVRDSDPTDSKRERLVQLIDDFKISGVNGVHVCMVLEVLGHQLLKWI 288

Query: 57  IRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTL 111
           I+  +   PL+  K I+ Q+LEGL++LHTK  ++HT IKPE+I  + + VY+  L
Sbjct: 289 IKSNYMGLPLICVKSILRQVLEGLDYLHTKCKIIHTDIKPENILLEVNEVYVRRL 343

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348510277|ref|XP_003442672.1| PREDICTED: serine/threonine-protein kinase SRPK2-like [Oreochromis niloticus]

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/90 (43%), Positives = 61/90 (67%)

Query: 22  DKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLN 81
           D +++L+D F+VTG+NG HVC V E++   L  ++I+  +   PL   K I+ Q+L+GL+
Sbjct: 151 DSIVQLIDDFRVTGMNGEHVCMVLEVLGHQLLRWIIKSNYTGLPLPCVKSILRQVLQGLD 210

Query: 82  HLHTKHNLVHTSIKPESIFFKADHVYIMTL 111
           +LHTK  ++HT IKPE+I  + D VY+  L
Sbjct: 211 YLHTKCKIIHTDIKPENILLRVDEVYVQKL 240

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410898968|ref|XP_003962969.1| PREDICTED: SRSF protein kinase 3-like [Takifugu rubripes]

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/115 (39%), Positives = 73/115 (63%), Gaps = 5/115 (4%)

Query: 2   HTNYATNLIKTLIEIQ-KHPSD----KLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYM 56
           +T  A + IK L  ++   PSD     +++L+D F+++G+NG HVC V E++   L  ++
Sbjct: 373 YTETALDEIKLLRCVRDSDPSDPYRETIVQLIDDFKISGVNGVHVCMVMEVLGHQLLKWI 432

Query: 57  IRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTL 111
           I+  +   PLV  K I+ Q+L+GL++LHTK  ++HT IKPE+I  + + VYI  L
Sbjct: 433 IKSNYMGLPLVCVKAIIKQVLQGLDYLHTKCKIIHTDIKPENILLEVEEVYIRRL 487

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|321478559|gb|EFX89516.1| hypothetical protein DAPPUDRAFT_303260 [Daphnia pulex]

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 62/90 (68%)

Query: 22  DKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLN 81
           +K ++LLD F+++GINGTHVC V E++   L   +IR ++Q  PL+  K I+ Q+LEGL+
Sbjct: 167 EKTVQLLDDFKISGINGTHVCMVFEVLGHNLLKLIIRSQYQGIPLLNVKTIIRQVLEGLD 226

Query: 82  HLHTKHNLVHTSIKPESIFFKADHVYIMTL 111
           +LHTK  ++HT IKPE+I    D  +I  L
Sbjct: 227 YLHTKCRIIHTDIKPENILICVDEPFIRKL 256

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|47228750|emb|CAG07482.1| unnamed protein product [Tetraodon nigroviridis]

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/115 (37%), Positives = 69/115 (60%), Gaps = 5/115 (4%)

Query: 2   HTNYATNLIKTLIEIQKHPSDK-----LMKLLDHFQVTGINGTHVCTVTEIMAECLCNYM 56
           +T  A + IK L  ++    D      +++LLD F+++G+NGTHVC V E++   L  ++
Sbjct: 116 YTETAVDEIKLLKSVRNSDPDDPNREMVVQLLDDFKISGVNGTHVCMVFEVLGHHLLKWI 175

Query: 57  IRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTL 111
           I+  +   PL   K I+ Q+L+GL++LHTK  ++HT IKPE+I    D  Y+  L
Sbjct: 176 IKSNYHGLPLPCVKSIIRQVLQGLDYLHTKCQIIHTDIKPENILMTVDQTYVRKL 230

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|321478543|gb|EFX89500.1| hypothetical protein DAPPUDRAFT_40922 [Daphnia pulex]

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 62/90 (68%)

Query: 22  DKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLN 81
           +K ++LLD F+++GINGTHVC V E++   L   +IR ++Q  PL+  K I+ Q+LEGL+
Sbjct: 122 EKTVQLLDDFKISGINGTHVCMVFEVLGHNLLKLIIRSQYQGIPLLNVKTIIRQVLEGLD 181

Query: 82  HLHTKHNLVHTSIKPESIFFKADHVYIMTL 111
           +LHTK  ++HT IKPE+I    D  +I  L
Sbjct: 182 YLHTKCRIIHTDIKPENILICVDEPFIRKL 211

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|348521348|ref|XP_003448188.1| PREDICTED: serine/threonine-protein kinase SRPK1-like [Oreochromis niloticus]

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/115 (37%), Positives = 72/115 (62%), Gaps = 5/115 (4%)

Query: 2   HTNYATNLIKTLIEIQKHPSDK-----LMKLLDHFQVTGINGTHVCTVTEIMAECLCNYM 56
           +T  A + IK L  ++   ++      +++LLD F+++G+NGTHVC V E++   L  ++
Sbjct: 118 YTETALDEIKLLRSVRNSDTNDPNREMVVQLLDDFKISGVNGTHVCMVFEVLGHHLLKWI 177

Query: 57  IRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTL 111
           I+  +Q  PL   K I+ Q+L+GL++LHTK +++HT IKPE+I    D  Y+  L
Sbjct: 178 IKSNYQGLPLACVKSIIRQVLQGLDYLHTKCHIIHTDIKPENILMSVDEPYVRRL 232

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
ZFIN|ZDB-GENE-030131-2399	634	srpk1a "serine/arginine-rich p	0.589	0.187	0.373	6.7e-20
ZFIN|ZDB-GENE-070112-2292	658	srpk1b "serine/arginine-rich p	0.589	0.180	0.388	9.4e-19
ZFIN|ZDB-GENE-101025-2	710	srpk3 "serine/arginine-rich pr	0.589	0.167	0.373	3.7e-18
RGD|727856	563	Srpk3 "SRSF protein kinase 3"	0.683	0.245	0.365	6.4e-18
MGI|MGI:1891338	565	Srpk3 "serine/arginine-rich pr	0.683	0.244	0.365	6.4e-18
UNIPROTKB|G3V8I2	566	Srpk3 "Protein Srpk3" [Rattus	0.683	0.243	0.365	6.4e-18
UNIPROTKB|Q9UPE1	567	SRPK3 "SRSF protein kinase 3"	0.732	0.261	0.341	1.1e-17
UNIPROTKB|E7ETV6	634	SRPK3 "SRSF protein kinase 3"	0.732	0.233	0.341	1.3e-17
UNIPROTKB|Q5R363	547	SRPK1 "SRSF protein kinase 1"	0.544	0.201	0.373	2.1e-17
UNIPROTKB|E1BNV4	639	SRPK1 "Uncharacterized protein	0.544	0.172	0.373	2.9e-17

ZFIN|ZDB-GENE-030131-2399 srpk1a "serine/arginine-rich protein specific kinase 1a" [Danio rerio (taxid:7955)]

 Score = 229 (85.7 bits), Expect = 6.7e-20, Sum P(2) = 6.7e-20
 Identities = 47/126 (37%), Positives = 77/126 (61%)

Query:     2 HTNYATNLIKTLIEIQK-HPSDK----LMKLLDHFQVTGINGTHVCTVTEIMAECLCNYM 56
             +T  A + IK L  ++   P D     +++LLD F+++G+NGTHVC V E++   L  ++
Sbjct:   119 YTETALDEIKLLRSVRNTDPDDPNREMVVQLLDDFKISGVNGTHVCMVFEVLGHHLLKWI 178

Query:    57 IRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQ 116
             I+  +Q  PL   K I+ Q+L+GL++LHTK  ++HT IKPE+I    + +Y+  L    +
Sbjct:   179 IKSNYQGLPLPCVKSIIRQVLQGLDYLHTKCQIIHTDIKPENILMSVEELYVRRLA--AE 236

Query:   117 ATTHQE 122
             AT  Q+
Sbjct:   237 ATEWQK 242

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ZFIN|ZDB-GENE-070112-2292 srpk1b "serine/arginine-rich protein specific kinase 1b" [Danio rerio (taxid:7955)]

 Score = 235 (87.8 bits), Expect = 9.4e-19, P = 9.4e-19
 Identities = 49/126 (38%), Positives = 78/126 (61%)

Query:     2 HTNYATNLIKTLIEI----QKHPS-DKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYM 56
             +T  A + IK L  +    Q  PS +K+++LLD F+++G+NGTHVC V E++   L  ++
Sbjct:   132 YTETALDEIKLLKAVRNTDQNDPSREKVVQLLDDFKISGVNGTHVCMVFEVLGHHLLKWI 191

Query:    57 IRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQ 116
             I+  +Q  PL   K I+ Q+L+GL++LHTK  ++HT IKPE+I    +  Y+  L    +
Sbjct:   192 IKSNYQGLPLPCVKSIIRQVLQGLDYLHTKCKIIHTDIKPENILMDVNEAYVKRLA--AE 249

Query:   117 ATTHQE 122
             AT  Q+
Sbjct:   250 ATEWQK 255

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

ZFIN|ZDB-GENE-101025-2 srpk3 "serine/arginine-rich protein specific kinase 3" [Danio rerio (taxid:7955)]

 Score = 230 (86.0 bits), Expect = 3.7e-18, P = 3.7e-18
 Identities = 47/126 (37%), Positives = 79/126 (62%)

Query:     2 HTNYATNLIKTLIEIQ-KHPSD----KLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYM 56
             +T  A + IK L  ++   P+D    +L++L+D F+++G+NG HVC V E++   L  ++
Sbjct:   248 YTETALDEIKLLKCVRDSDPTDSKRERLVQLIDDFKISGVNGVHVCMVLEVLGHQLLKWI 307

Query:    57 IRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQ 116
             I+  +   PL+  K I+ Q+LEGL++LHTK  ++HT IKPE+I  + + VY+  L    +
Sbjct:   308 IKSNYMGLPLICVKSILRQVLEGLDYLHTKCKIIHTDIKPENILLEVNEVYVRRLA--AE 365

Query:   117 ATTHQE 122
             AT  Q+
Sbjct:   366 ATIWQK 371

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

RGD|727856 Srpk3 "SRSF protein kinase 3" [Rattus norvegicus (taxid:10116)]

 Score = 226 (84.6 bits), Expect = 6.4e-18, P = 6.4e-18
 Identities = 53/145 (36%), Positives = 81/145 (55%)

Query:     2 HTNYATNLIKTLIEIQ-KHPSDK----LMKLLDHFQVTGINGTHVCTVTEIMAECLCNYM 56
             +T  A + IK L  ++   PSD     +++L+D F+++G+NG HVC V E++   L  ++
Sbjct:   115 YTETAVDEIKLLKCVRDSDPSDPKRETIVQLIDDFRISGVNGVHVCMVLEVLGHQLLKWI 174

Query:    57 IRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQ 116
             I+  +Q  P+   K IV Q+L GL++LHTK  ++HT IKPE+I       YI  L    +
Sbjct:   175 IKSNYQGLPVPCVKSIVRQVLHGLDYLHTKCKIIHTDIKPENILLCVGDAYIRRLA--AE 232

Query:   117 ATTHQECHDQQSSSKTKSKIFCEIL 141
             AT  Q+   Q  S  T S    E+L
Sbjct:   233 ATEWQQSGAQPPSRSTVSTAPQEVL 257

GO:0004674 "protein serine/threonine kinase activity" evidence=ISO

GO:0006468 "protein phosphorylation" evidence=ISO

GO:0007519 "skeletal muscle tissue development" evidence=ISO

GO:0060537 "muscle tissue development" evidence=ISO

MGI|MGI:1891338 Srpk3 "serine/arginine-rich protein specific kinase 3" [Mus musculus (taxid:10090)]

 Score = 226 (84.6 bits), Expect = 6.4e-18, P = 6.4e-18
 Identities = 53/145 (36%), Positives = 81/145 (55%)

Query:     2 HTNYATNLIKTLIEIQ-KHPSDK----LMKLLDHFQVTGINGTHVCTVTEIMAECLCNYM 56
             +T  A + IK L  ++   PSD     +++L+D F+++G+NG HVC V E++   L  ++
Sbjct:   115 YTETAVDEIKLLKCVRDSDPSDPKRETIVQLIDDFRISGVNGVHVCMVLEVLGHQLLKWI 174

Query:    57 IRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQ 116
             I+  +Q  P+   K IV Q+L GL++LHTK  ++HT IKPE+I       YI  L    +
Sbjct:   175 IKSNYQGLPVPCVKSIVRQVLHGLDYLHTKCKIIHTDIKPENILLCVGDAYIRRLA--AE 232

Query:   117 ATTHQECHDQQSSSKTKSKIFCEIL 141
             AT  Q+   Q  S  T S    E+L
Sbjct:   233 ATEWQQSGAQPPSRSTVSTAPQEVL 257

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006468 "protein phosphorylation" evidence=IEA;IDA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007517 "muscle organ development" evidence=IEA

GO:0007519 "skeletal muscle tissue development" evidence=IMP

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0060537 "muscle tissue development" evidence=IMP

UNIPROTKB|G3V8I2 Srpk3 "Protein Srpk3" [Rattus norvegicus (taxid:10116)]

 Score = 226 (84.6 bits), Expect = 6.4e-18, P = 6.4e-18
 Identities = 53/145 (36%), Positives = 81/145 (55%)

Query:     2 HTNYATNLIKTLIEIQ-KHPSDK----LMKLLDHFQVTGINGTHVCTVTEIMAECLCNYM 56
             +T  A + IK L  ++   PSD     +++L+D F+++G+NG HVC V E++   L  ++
Sbjct:   115 YTETAVDEIKLLKCVRDSDPSDPKRETIVQLIDDFRISGVNGVHVCMVLEVLGHQLLKWI 174

Query:    57 IRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQ 116
             I+  +Q  P+   K IV Q+L GL++LHTK  ++HT IKPE+I       YI  L    +
Sbjct:   175 IKSNYQGLPVPCVKSIVRQVLHGLDYLHTKCKIIHTDIKPENILLCVGDAYIRRLA--AE 232

Query:   117 ATTHQECHDQQSSSKTKSKIFCEIL 141
             AT  Q+   Q  S  T S    E+L
Sbjct:   233 ATEWQQSGAQPPSRSTVSTAPQEVL 257

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007519 "skeletal muscle tissue development" evidence=IEA

UNIPROTKB|Q9UPE1 SRPK3 "SRSF protein kinase 3" [Homo sapiens (taxid:9606)]

 Score = 224 (83.9 bits), Expect = 1.1e-17, P = 1.1e-17
 Identities = 53/155 (34%), Positives = 86/155 (55%)

Query:     2 HTNYATNLIKTLIEIQ-KHPSDK----LMKLLDHFQVTGINGTHVCTVTEIMAECLCNYM 56
             +T  A + IK L  ++   PSD     +++L+D F+++G+NG HVC V E++   L  ++
Sbjct:   116 YTETAVDEIKLLKCVRDSDPSDPKRETIVQLIDDFRISGVNGVHVCMVLEVLGHQLLKWI 175

Query:    57 IRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQ 116
             I+  +Q  P+   K IV Q+L GL++LHTK  ++HT IKPE+I       YI  L    +
Sbjct:   176 IKSNYQGLPVPCVKSIVRQVLHGLDYLHTKCKIIHTDIKPENILLCVGDAYIRRLA--AE 233

Query:   117 ATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFR 151
             AT  Q+      S    S    E+L+  +L+++ R
Sbjct:   234 ATEWQQAGAPPPSRSIVSTAPQEVLQTGKLSKNKR 268

GO:0030154 "cell differentiation" evidence=IEA

GO:0007519 "skeletal muscle tissue development" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=NAS

GO:0006468 "protein phosphorylation" evidence=NAS

GO:0005575 "cellular_component" evidence=ND

GO:0005524 "ATP binding" evidence=NAS

GO:0060537 "muscle tissue development" evidence=ISS

UNIPROTKB|E7ETV6 SRPK3 "SRSF protein kinase 3" [Homo sapiens (taxid:9606)]

 Score = 224 (83.9 bits), Expect = 1.3e-17, P = 1.3e-17
 Identities = 53/155 (34%), Positives = 86/155 (55%)

Query:     2 HTNYATNLIKTLIEIQ-KHPSDK----LMKLLDHFQVTGINGTHVCTVTEIMAECLCNYM 56
             +T  A + IK L  ++   PSD     +++L+D F+++G+NG HVC V E++   L  ++
Sbjct:   183 YTETAVDEIKLLKCVRDSDPSDPKRETIVQLIDDFRISGVNGVHVCMVLEVLGHQLLKWI 242

Query:    57 IRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQ 116
             I+  +Q  P+   K IV Q+L GL++LHTK  ++HT IKPE+I       YI  L    +
Sbjct:   243 IKSNYQGLPVPCVKSIVRQVLHGLDYLHTKCKIIHTDIKPENILLCVGDAYIRRLA--AE 300

Query:   117 ATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFR 151
             AT  Q+      S    S    E+L+  +L+++ R
Sbjct:   301 ATEWQQAGAPPPSRSIVSTAPQEVLQTGKLSKNKR 335

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q5R363 SRPK1 "SRSF protein kinase 1" [Homo sapiens (taxid:9606)]

 Score = 221 (82.9 bits), Expect = 2.1e-17, P = 2.1e-17
 Identities = 43/115 (37%), Positives = 72/115 (62%)

Query:     2 HTNYATNLIKTLIEIQKH-PSDK----LMKLLDHFQVTGINGTHVCTVTEIMAECLCNYM 56
             +T  A + I+ L  ++   P+D     +++LLD F+++G+NGTH+C V E++   L  ++
Sbjct:    10 YTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHICMVFEVLGHHLLKWI 69

Query:    57 IRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTL 111
             I+  +Q  PL   K I+ Q+L+GL++LHTK  ++HT IKPE+I    +  YI  L
Sbjct:    70 IKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLSVNEQYIRRL 124

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|E1BNV4 SRPK1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 221 (82.9 bits), Expect = 2.9e-17, P = 2.9e-17
 Identities = 43/115 (37%), Positives = 72/115 (62%)

Query:     2 HTNYATNLIKTLIEIQKH-PSDK----LMKLLDHFQVTGINGTHVCTVTEIMAECLCNYM 56
             +T  A + I+ L  ++   P+D     +++LLD F+++G+NGTH+C V E++   L  ++
Sbjct:   101 YTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHICMVFEVLGHHLLKWI 160

Query:    57 IRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTL 111
             I+  +Q  PL   K I+ Q+L+GL++LHTK  ++HT IKPE+I    +  YI  L
Sbjct:   161 IKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLSVNEQYIRRL 215

GO:0050684 "regulation of mRNA processing" evidence=IEA

GO:0045071 "negative regulation of viral genome replication" evidence=IEA

GO:0045070 "positive regulation of viral genome replication" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.11	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	202
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	5e-10
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	2e-08
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	9e-08
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	3e-07
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	3e-06
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	5e-06
PHA03209	357	PHA03209, PHA03209, serine/threonine kinase US3; P	1e-05
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	6e-05
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	9e-05
cd06618	296	cd06618, PKc_MKK7, Catalytic domain of the dual-sp	1e-04
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	2e-04
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	4e-04
cd07831	282	cd07831, STKc_MOK, Catalytic domain of the Serine/	5e-04
PTZ00024	335	PTZ00024, PTZ00024, cyclin-dependent protein kinas	5e-04
PHA03390	267	PHA03390, pk1, serine/threonine-protein kinase 1;	5e-04
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	8e-04
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	8e-04
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	0.001
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	0.001
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	0.002
PTZ00284	467	PTZ00284, PTZ00284, protein kinase; Provisional	0.003
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	0.003
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	0.004

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 57.2 bits (139), Expect = 5e-10
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 7/90 (7%)

Query: 10  IKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVA 69
           +K+L ++ +HP+  ++KL + F+        +  V E M   L   M  +K +P    V 
Sbjct: 48  VKSLRKLNEHPN--IVKLKEVFREND----ELYFVFEYMEGNLYQLMKDRKGKPFSESVI 101

Query: 70  KIIVNQILEGLNHLHTKHNLVHTSIKPESI 99
           + I+ QIL+GL H+H KH   H  +KPE++
Sbjct: 102 RSIIYQILQGLAHIH-KHGFFHRDLKPENL 130

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 52.5 bits (127), Expect = 2e-08
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 16/107 (14%)

Query: 9   LIKTLIEIQ-----KHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAEC-LCNYMIRQKFQ 62
             + L EI+     KHP   +++L D F+    +   +  V E      L + + ++   
Sbjct: 41  RERILREIKILKKLKHP--NIVRLYDVFE----DEDKLYLVMEYCEGGDLFDLLKKRG-- 92

Query: 63  PAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKAD-HVYI 108
                 A+  + QIL  L +LH    +VH  +KPE+I    D HV +
Sbjct: 93  RLSEDEARFYLRQILSALEYLH-SKGIVHRDLKPENILLDEDGHVKL 138

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 49.9 bits (120), Expect = 9e-08
 Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 6/91 (6%)

Query: 23  KLMKLLDH-----FQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQIL 77
           +++K L+H           +  H+  V E         ++++            I+ QIL
Sbjct: 43  EILKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGSLKDLLKENEGKLSEDEILRILLQIL 102

Query: 78  EGLNHLHTKHNLVHTSIKPESIFFKADHVYI 108
           EGL +LH  + ++H  +KPE+I   +D+  +
Sbjct: 103 EGLEYLH-SNGIIHRDLKPENILLDSDNGKV 132

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 15/98 (15%)

Query: 15  EIQ-----KHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAEC-LCNYMIRQKFQPAPLVV 68
           EI+      HP   +++L+D F+    +  H+  V E      L +Y+ R    P     
Sbjct: 48  EIRILRRLSHP--NIVRLIDAFE----DKDHLYLVMEYCEGGDLFDYLSRGG--PLSEDE 99

Query: 69  AKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHV 106
           AK I  QIL GL +LH  + ++H  +KPE+I    + V
Sbjct: 100 AKKIALQILRGLEYLH-SNGIIHRDLKPENILLDENGV 136

Length = 260

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 9/95 (9%)

Query: 10  IKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVA 69
           IK L   Q HP   ++KLLD F      G+    V E M   L   ++R + +P P    
Sbjct: 50  IKALQACQ-HPY--VVKLLDVFPH----GSGFVLVMEYMPSDLSE-VLRDEERPLPEAQV 101

Query: 70  KIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKAD 104
           K  +  +L+G+ ++H  + ++H  +KP ++   AD
Sbjct: 102 KSYMRMLLKGVAYMH-ANGIMHRDLKPANLLISAD 135

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 7/89 (7%)

Query: 23  KLMKLLDHFQVTGIN-----GTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQIL 77
           KL+K L+H  +  +         +  V E M   L   +I+ + +  P  + K  + Q+L
Sbjct: 50  KLLKELNHPNIIKLLDVFRHKGDLYLVFEFMDTDLYK-LIKDRQRGLPESLIKSYLYQLL 108

Query: 78  EGLNHLHTKHNLVHTSIKPESIFFKADHV 106
           +GL   H  H ++H  +KPE++    + V
Sbjct: 109 QGLAFCH-SHGILHRDLKPENLLINTEGV 136

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 9/92 (9%)

Query: 12  TLIE---IQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVV 68
           TLIE   +Q      ++++ D    T ++G   C V    +  L  Y+ ++  +P P+  
Sbjct: 104 TLIEAMLLQNVNHPSVIRMKD----TLVSGAITCMVLPHYSSDLYTYLTKRS-RPLPIDQ 158

Query: 69  AKIIVNQILEGLNHLHTKHNLVHTSIKPESIF 100
           A II  QILEGL +LH    ++H  +K E+IF
Sbjct: 159 ALIIEKQILEGLRYLH-AQRIIHRDVKTENIF 189

Length = 357

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 42.1 bits (99), Expect = 6e-05
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 36  INGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIK 95
           +N  ++C   E M +C     I +K  P P+ +   I   ++EGL +L+  H ++H  IK
Sbjct: 73  LNENNICMCMEFM-DCGSLDRIYKKGGPIPVEILGKIAVAVVEGLTYLYNVHRIMHRDIK 131

Query: 96  PESIFF 101
           P +I  
Sbjct: 132 PSNILV 137

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 41.8 bits (99), Expect = 9e-05
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 7/52 (13%)

Query: 55  YM-------IRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESI 99
           YM       + +K    P  V   I  QIL+GL++LHTK +++H  IKP ++
Sbjct: 80  YMDGGSLADLLKKVGKIPEPVLAYIARQILKGLDYLHTKRHIIHRDIKPSNL 131

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 46  EIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKAD 104
           E+M+ CL   + R +  P P  +   +   I++ L++L  KH ++H  +KP +I   A 
Sbjct: 94  ELMSTCLDKLLKRIQ-GPIPEDILGKMTVAIVKALHYLKEKHGVIHRDVKPSNILLDAS 151

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates its downstream target, c-Jun N-terminal kinase (JNK), on specific threonine and tyrosine residues. Although MKK7 is capable of dual phosphorylation, it prefers to phosphorylate the threonine residue of JNK. Thus, optimal activation of JNK requires both MKK4 (not included in this subfamily) and MKK7. MKK7 is primarily activated by cytokines. MKK7 is essential for liver formation during embryogenesis. It plays roles in G2/M cell cycle arrest and cell growth. In addition, it is involved in the control of programmed cell death, which is crucial in oncogenesis, cancer chemoresistance, and antagonism to TNFalpha-induced killing, through its inhibition by Gadd45beta and the subsequent suppression of the JNK cascade. Length = 296

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 3/47 (6%)

Query: 65  PLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTL 111
              V ++   Q+LEGL +LH+ H +VH  IKP +IF   DH  ++ L
Sbjct: 97  DEHVIRVYTLQLLEGLAYLHS-HGIVHRDIKPANIFL--DHNGVIKL 140

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 40.1 bits (92), Expect = 4e-04
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 9/97 (9%)

Query: 10  IKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLV-- 67
           I+ L  +   P+  ++KL D FQ    +   +  V E +       ++++  +  PL   
Sbjct: 48  IQILASLNHPPN--IVKLYDFFQ----DEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSES 101

Query: 68  VAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKAD 104
            A  I+ QIL  L +LH    ++H  IKPE+I    D
Sbjct: 102 EALFILAQILSALEYLH-SKGIIHRDIKPENILLDRD 137

Length = 384

>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 56  MIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHV 106
           +I+ + +P P    K  + Q+L+ L+H+H ++ + H  IKPE+I  K D +
Sbjct: 89  LIKGRKRPLPEKRVKSYMYQLLKSLDHMH-RNGIFHRDIKPENILIKDDIL 138

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. Length = 282

>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 10/91 (10%)

Query: 10  IKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVA 69
           +K + EI KH +  +M L+D +    + G  +  V +IMA  L   + R+       V  
Sbjct: 71  LKIMNEI-KHEN--IMGLVDVY----VEGDFINLVMDIMASDLKKVVDRKIRLTESQV-- 121

Query: 70  KIIVNQILEGLNHLHTKHNLVHTSIKPESIF 100
           K I+ QIL GLN LH K   +H  + P +IF
Sbjct: 122 KCILLQILNGLNVLH-KWYFMHRDLSPANIF 151

Length = 335

>gnl|CDD|223069 PHA03390, pk1, serine/threonine-protein kinase 1; Provisional

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 3/41 (7%)

Query: 70  KIIVNQILEGLNHLHTKHNLVHTSIKPESIFF--KADHVYI 108
           K I+ Q++E LN LH KHN++H  IK E++ +    D +Y+
Sbjct: 112 KKIIRQLVEALNDLH-KHNIIHNDIKLENVLYDRAKDRIYL 151

Length = 267

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 39.1 bits (92), Expect = 8e-04
 Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 15/98 (15%)

Query: 10  IKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQK---FQPAPL 66
           IK L E+ KHP+  ++ LLD F     N   +  V E M   L   +I+ K     PA +
Sbjct: 53  IKLLQEL-KHPN--IIGLLDVF-GHKSN---INLVFEFMETDL-EKVIKDKSIVLTPADI 104

Query: 67  VVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKAD 104
              K  +   L GL +LH  + ++H  +KP ++   +D
Sbjct: 105 ---KSYMLMTLRGLEYLH-SNWILHRDLKPNNLLIASD 138

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 38.7 bits (91), Expect = 8e-04
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 57  IRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKAD 104
           + +KF   P  V +    QILEGL +LH  + +VH  IK  +I   +D
Sbjct: 91  LLKKFGKLPEPVIRKYTRQILEGLAYLH-SNGIVHRDIKGANILVDSD 137

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 38.6 bits (91), Expect = 0.001
 Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 9/92 (9%)

Query: 23  KLMKLLDHFQVTG-----INGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVN--- 74
           K++K L+H  +            +C V E       +  I+++ +       + I++   
Sbjct: 51  KILKKLNHPNIIKYYESFEEKGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFV 110

Query: 75  QILEGLNHLHTKHNLVHTSIKPESIFFKADHV 106
           Q+   L +LH    ++H  IKP++IF  ++ +
Sbjct: 111 QLCLALKYLH-SRKILHRDIKPQNIFLTSNGL 141

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 62  QPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESI 99
              P  +   I   +L+GL +LH KH ++H  +KP +I
Sbjct: 95  GRIPERILGKIAVAVLKGLTYLHEKHKIIHRDVKPSNI 132

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 37.5 bits (88), Expect = 0.002
 Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 56  MIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIF 100
            + ++  P    + K I+ Q+L GL + H+ H ++H  +KP++I 
Sbjct: 87  YLDKRPGPLSPNLIKSIMYQLLRGLAYCHS-HRILHRDLKPQNIL 130

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|140307 PTZ00284, PTZ00284, protein kinase; Provisional

 Score = 37.6 bits (87), Expect = 0.003
 Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 15/92 (16%)

Query: 17  QKHPSDK--LMKLLDHFQVTGINGT-HVCTVTEIMAECLCNYMIRQKFQPAPLV---VAK 70
           Q  P+D+  LMK+  +FQ    N T H+C V      CL +++++      P     +A+
Sbjct: 184 QADPADRFPLMKIQRYFQ----NETGHMCIVMPKYGPCLLDWIMKH----GPFSHRHLAQ 235

Query: 71  IIVNQILEGLNHLHTKHNLVHTSIKPESIFFK 102
           II  Q    L++ HT+ +L+HT +KPE+I  +
Sbjct: 236 IIF-QTGVALDYFHTELHLMHTDLKPENILME 266

Length = 467

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 37.2 bits (87), Expect = 0.003
 Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 12/82 (14%)

Query: 68  VAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKAD-HVYIM----------TLINIQQ 116
             +    +IL  L +LH+K  ++H  +KPE+I    D H+ I                  
Sbjct: 103 CTRFYAAEILLALEYLHSK-GIIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSSPESN 161

Query: 117 ATTHQECHDQQSSSKTKSKIFC 138
                    Q   ++ +   F 
Sbjct: 162 KGDATNIDSQIEKNRRRFASFV 183

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 36.8 bits (86), Expect = 0.004
 Identities = 11/37 (29%), Positives = 24/37 (64%), Gaps = 1/37 (2%)

Query: 68  VAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKAD 104
           VA+I + +I+  L +LH  + ++H  +KP++I   ++
Sbjct: 94  VARIYIAEIVLALEYLH-SNGIIHRDLKPDNILIDSN 129

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	202
KOG0595|consensus	429		100.0
KOG0615|consensus	475		100.0
KOG0581|consensus	364		100.0
KOG0598|consensus	357		100.0
KOG0593|consensus	396		100.0
KOG0616|consensus	355		100.0
KOG0592|consensus	604		100.0
KOG0575|consensus	592		100.0
KOG0583|consensus	370		100.0
KOG0599|consensus	411		100.0
KOG0192|consensus	362		100.0
KOG0659|consensus	318		100.0
KOG0591|consensus	375		100.0
KOG0661|consensus	538		100.0
KOG0600|consensus	560		100.0
KOG0578|consensus	550		100.0
KOG0588|consensus	786		100.0
KOG0611|consensus	668		100.0
KOG0658|consensus	364		100.0
KOG0197|consensus	468		100.0
KOG0589|consensus	426		99.98
KOG0594|consensus	323		99.98
KOG4721|consensus	904		99.98
KOG0033|consensus	355		99.97
KOG0667|consensus	586		99.97
KOG0660|consensus	359		99.97
KOG0582|consensus	516		99.97
KOG0663|consensus	419		99.97
KOG0604|consensus	400		99.97
KOG0597|consensus	808		99.97
KOG0605|consensus	550		99.97
KOG0694|consensus	694		99.97
KOG0198|consensus	313		99.97
KOG0610|consensus	459		99.97
KOG1989|consensus	738		99.97
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.97
KOG0986|consensus	591		99.96
KOG4717|consensus	864		99.96
KOG0032|consensus	382		99.96
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.96
KOG0580|consensus	281		99.96
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.96
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.96
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.96
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.96
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.96
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.96
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.96
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.96
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.96
KOG1187|consensus	361		99.96
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.96
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.96
KOG0585|consensus	576		99.96
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.96
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.96
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.96
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.96
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.96
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.96
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.96
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.96
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.96
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.96
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.96
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.96
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.96
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.96
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.96
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.96
KOG0607|consensus	463		99.96
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.96
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.96
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.96
KOG0596|consensus	677		99.96
PTZ00267	478	NIMA-related protein kinase; Provisional	99.96
KOG0666|consensus	438		99.96
KOG0579|consensus	1187		99.96
KOG4236|consensus	888		99.96
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.96
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.96
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.96
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.96
KOG4250|consensus	732		99.96
PHA03212	391	serine/threonine kinase US3; Provisional	99.96
KOG1290|consensus	590		99.96
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.96
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.96
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.95
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.95
KOG0612|consensus	1317		99.95
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.95
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.95
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.95
PTZ00036	440	glycogen synthase kinase; Provisional	99.95
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.95
KOG0586|consensus	596		99.95
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.95
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.95
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.95
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.95
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.95
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.95
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.95
KOG0577|consensus	948		99.95
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.95
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.95
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.95
KOG0201|consensus	467		99.95
PHA02988	283	hypothetical protein; Provisional	99.95
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.95
KOG1026|consensus	774		99.95
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.95
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.95
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.95
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.95
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.95
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.95
PHA03207	392	serine/threonine kinase US3; Provisional	99.95
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.95
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.95
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.95
KOG0984|consensus	282		99.95
KOG0983|consensus	391		99.95
KOG1152|consensus	772		99.95
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.95
KOG0614|consensus	732		99.95
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.95
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.95
KOG0193|consensus	678		99.95
PHA03209	357	serine/threonine kinase US3; Provisional	99.94
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.94
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.94
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.94
KOG0690|consensus	516		99.94
PTZ00284	467	protein kinase; Provisional	99.94
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.94
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.94
KOG0608|consensus	1034		99.94
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.94
PHA03211	461	serine/threonine kinase US3; Provisional	99.94
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.94
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.94
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.94
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.94
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.94
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.94
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.94
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.94
KOG0574|consensus	502		99.94
KOG0584|consensus	632		99.94
KOG1094|consensus	807		99.94
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.94
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.94
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.94
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.94
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.94
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.94
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.94
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.94
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.94
KOG1151|consensus	775		99.94
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.94
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.94
KOG0194|consensus	474		99.94
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.94
PHA03210	501	serine/threonine kinase US3; Provisional	99.94
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.94
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.94
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.94
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.94
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.94
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.94
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.94
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.94
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.94
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.94
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.93
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.93
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.93
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.93
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.93
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.93
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.93
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.93
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.93
PTZ00283	496	serine/threonine protein kinase; Provisional	99.93
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.93
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.93
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.93
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.93
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.93
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.93
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.93
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.93
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.93
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.93
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.93
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.93
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.93
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.93
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.93
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.93
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.93
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.93
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.93
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.93
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.93
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.93
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.93
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.93
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.93
KOG0665|consensus	369		99.93
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.93
KOG1095|consensus	1025		99.93
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.93
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.93
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.93
KOG4279|consensus	1226		99.93
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.93
KOG0603|consensus	612		99.93
PLN00009	294	cyclin-dependent kinase A; Provisional	99.93
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.93
KOG2345|consensus	302		99.93
KOG0671|consensus	415		99.93
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.93
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.93
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.93
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.93
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.93
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.93
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.93
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.93
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.93
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.93
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.93
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.93
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.93
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.93
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.93
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.93
KOG0587|consensus	953		99.93
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.93
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.93
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.93
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.93
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.93
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.93
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.93
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.93
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.93
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.93
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.93
KOG1006|consensus	361		99.93
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.93
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.93
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.93
KOG4645|consensus	1509		99.93
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.93
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.93
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.93
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.93
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.93
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.93
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.93
PHA02882	294	putative serine/threonine kinase; Provisional	99.93
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.93
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.93
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.93
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.92
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.92
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.92
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.92
KOG0696|consensus	683		99.92
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.92
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.92
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.92
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.92
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.92
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.92
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.92
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.92
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.92
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.92
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.92
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.92
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.92
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.92
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.92
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.92
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.92
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.92
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.92
KOG4278|consensus	1157		99.92
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.92
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.92
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.92
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.92
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.92
KOG0662|consensus	292		99.92
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.92
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.92
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.92
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.92
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.92
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.92
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.92
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.92
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.92
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.92
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.92
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.92
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.92
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.92
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.92
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.92
KOG0669|consensus	376		99.92
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.92
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.92
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.92
KOG1027|consensus	903		99.92
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.92
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.92
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.92
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.92
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.92
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.92
KOG0695|consensus	593		99.92
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.92
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.92
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.92
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.92
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.92
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.92
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.91
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.91
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.91
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.91
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.91
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.91
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.91
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.91
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.91
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.91
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.91
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.91
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.91
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.91
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.91
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.91
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.91
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.91
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.91
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.91
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.91
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.91
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.91
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.91
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.91
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.91
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.91
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.91
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.91
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.91
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.9
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.9
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.9
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.9
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.9
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.9
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.9
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.9
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.9
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.9
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.9
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.9
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.9
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.9
KOG0664|consensus	449		99.9
KOG4257|consensus	974		99.9
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.9
KOG3653|consensus	534		99.9
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.9
KOG0196|consensus	996		99.89
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.89
KOG2052|consensus	513		99.89
KOG0670|consensus	752		99.89
KOG0668|consensus	338		99.89
KOG0199|consensus	1039		99.88
KOG0200|consensus	609		99.88
KOG1345|consensus	378		99.87
PLN00181	793	protein SPA1-RELATED; Provisional	99.87
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.86
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.86
KOG1035|consensus	1351		99.86
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.86
KOG1167|consensus	418		99.84
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.84
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.84
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.84
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.84
KOG0576|consensus	829		99.83
KOG1025|consensus	1177		99.82
KOG1164|consensus	322		99.79
PRK09188	365	serine/threonine protein kinase; Provisional	99.78
KOG1163|consensus	341		99.76
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.75
PRK10345	210	hypothetical protein; Provisional	99.74
KOG4158|consensus	598		99.74
KOG1165|consensus	449		99.71
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.7
KOG0590|consensus	601		99.69
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.69
KOG1024|consensus	563		99.68
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.67
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.66
PRK12274	218	serine/threonine protein kinase; Provisional	99.66
KOG0603|consensus	612		99.61
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.59
smart00090	237	RIO RIO-like kinase.	99.52
KOG1240|consensus	1431		99.52
KOG1033|consensus	516		99.51
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.5
PRK14879	211	serine/threonine protein kinase; Provisional	99.5
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.46
KOG1166|consensus	974		99.41
KOG0195|consensus	448		99.41
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.39
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	99.36
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.35
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.31
KOG0606|consensus	1205		99.28
KOG1023|consensus	484		99.25
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.24
KOG0590|consensus	601		99.2
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	99.15
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	99.12
KOG1266|consensus	458		99.09
KOG3087|consensus	229		99.08
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	99.08
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	99.08
KOG1243|consensus	690		99.05
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	99.0
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	98.98
PRK09902	216	hypothetical protein; Provisional	98.92
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	98.85
KOG0601|consensus	524		98.84
COG0478	304	RIO-like serine/threonine protein kinase fused to	98.53
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	98.48
KOG3741|consensus	655		98.46
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	98.41
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	98.39
KOG0601|consensus	524		98.33
KOG0606|consensus	1205		98.26
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	98.0
KOG2137|consensus	700		97.84
COG0661	517	AarF Predicted unusual protein kinase [General fun	97.84
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	97.8
COG4248	637	Uncharacterized protein with protein kinase and he	97.66
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	97.63
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	97.62
KOG1235|consensus	538		97.4
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	97.36
PLN02876	822	acyl-CoA dehydrogenase	97.31
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	97.14
COG5072	488	ALK1 Serine/threonine kinase of the haspin family	97.13
KOG2270|consensus	520		97.12
PF01636	239	APH: Phosphotransferase enzyme family This family	96.98
KOG0576|consensus	829		96.97
KOG2268|consensus	465		96.72
PF07387	308	Seadorna_VP7: Seadornavirus VP7; InterPro: IPR0099	96.06
KOG2269|consensus	531		96.0
KOG1035|consensus	1351		95.99
PRK09550	401	mtnK methylthioribose kinase; Reviewed	95.73
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	95.73
cd05156	302	ChoK_euk Choline Kinase (ChoK) in eukaryotes. The	95.61
TIGR01767	370	MTRK 5-methylthioribose kinase. This enzyme is inv	95.54
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	95.36
PRK05231	319	homoserine kinase; Provisional	95.35
TIGR00938	307	thrB_alt homoserine kinase, Neisseria type. Homose	95.25
COG0510	269	ycfN Thiamine kinase and related kinases [Coenzyme	95.23
PTZ00384	383	choline kinase; Provisional	95.02
PHA03111	444	Ser/Thr kinase; Provisional	95.02
TIGR02906	313	spore_CotS spore coat protein, CotS family. Member	94.91
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	94.76
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	94.73
PF01633	211	Choline_kinase: Choline/ethanolamine kinase; Inter	94.67
PF05445	434	Pox_ser-thr_kin: Poxvirus serine/threonine protein	94.47
PRK10271	188	thiK thiamine kinase; Provisional	94.26
smart00587	196	CHK ZnF_C4 abd HLH domain containing kinases domai	94.01
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	93.97
KOG1826|consensus	2724		93.74
PLN02236	344	choline kinase	93.36
cd05152	276	MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH	93.19
COG2334	331	Putative homoserine kinase type II (protein kinase	92.89
PRK06148	1013	hypothetical protein; Provisional	92.58
PLN02421	330	phosphotransferase, alcohol group as acceptor/kina	92.4
KOG1236|consensus	565		92.4
PF02958	294	EcKinase: Ecdysteroid kinase; InterPro: IPR004119	91.77
TIGR02904	309	spore_ysxE spore coat protein YsxE. Members of thi	91.69

>KOG0595|consensus

Probab=100.00  E-value=4e-39  Score=248.49  Aligned_cols=156  Identities=24%  Similarity=0.378  Sum_probs=138.3

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ...|+++|+.+ +||  |||.+++++.    .++++|+||||| ||+|.+++++.+  ++++++++.++.|++.||++||
T Consensus        56 L~~Ei~iLkel-~H~--nIV~l~d~~~----~~~~i~lVMEyC~gGDLs~yi~~~~--~l~e~t~r~Fm~QLA~alq~L~  126 (429)
T KOG0595|consen   56 LLSEIKILKEL-KHP--NIVRLLDCIE----DDDFIYLVMEYCNGGDLSDYIRRRG--RLPEATARHFMQQLASALQFLH  126 (429)
T ss_pred             HHHHHHHHHhc-CCc--ceeeEEEEEe----cCCeEEEEEEeCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHH
Confidence            45789999999 455  9999999999    677999999999 999999999884  5999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecC-Cc---ceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           85 TKHNLVHTSIKPESIFFKAD-HV---YIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~-~~---~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      ++ +|+||||||+|||+... ..   ..+||+|||+|+...+.......+|++-|||||++....      |+.|+|+||
T Consensus       127 ~~-~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L~~~~~a~tlcGSplYMAPEV~~~~~------YdAKADLWS  199 (429)
T KOG0595|consen  127 EN-NIIHRDLKPQNILLSTTARNDTSPVLKIADFGFARFLQPGSMAETLCGSPLYMAPEVIMSQQ------YDAKADLWS  199 (429)
T ss_pred             HC-CeeeccCCcceEEeccCCCCCCCceEEecccchhhhCCchhHHHHhhCCccccCHHHHHhcc------ccchhhHHH
Confidence            98 99999999999999985 32   358999999999998666666789999999999998555      999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCC
Q psy320          161 IKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       161 l~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +|.      ++-+|+.|.++|+.
T Consensus       200 iG~------Ilyq~l~g~~Pf~a  216 (429)
T KOG0595|consen  200 IGT------ILYQCLTGKPPFDA  216 (429)
T ss_pred             HHH------HHHHHHhCCCCccc
Confidence            997      44488889999884

>KOG0615|consensus

Probab=100.00  E-value=2.9e-38  Score=243.96  Aligned_cols=148  Identities=23%  Similarity=0.348  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            7 TNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         7 ~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      .+|+++|++| +||  |||+++++|.    .....|+||||+ ||+|.+.+-..+  .+.++..+.+++|++.|+.|||+
T Consensus       224 ~~EieILkkL-~HP--~IV~~~d~f~----~~ds~YmVlE~v~GGeLfd~vv~nk--~l~ed~~K~~f~Qll~avkYLH~  294 (475)
T KOG0615|consen  224 QNEIEILKKL-SHP--NIVRIKDFFE----VPDSSYMVLEYVEGGELFDKVVANK--YLREDLGKLLFKQLLTAVKYLHS  294 (475)
T ss_pred             HHHHHHHHhc-CCC--CEEEEeeeee----cCCceEEEEEEecCccHHHHHHhcc--ccccchhHHHHHHHHHHHHHHHH
Confidence            5899999999 565  9999999999    567889999999 999999998774  49999999999999999999999


Q ss_pred             hCCccccCCCCCceeeecC-CcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCC-CcchhhHHH
Q psy320           86 KHNLVHTSIKPESIFFKAD-HVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDP-RVDPTSIKM  163 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~-~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~-~~Diwsl~~  163 (202)
                      . ||+||||||+|||+..+ ....+|++|||+|+.......-...|||+.|.|||++....    ..+.+ ++|+||+|+
T Consensus       295 ~-GI~HRDiKPeNILl~~~~e~~llKItDFGlAK~~g~~sfm~TlCGTpsYvAPEVl~~kg----~~~~~~kVDiWSlGc  369 (475)
T KOG0615|consen  295 Q-GIIHRDIKPENILLSNDAEDCLLKITDFGLAKVSGEGSFMKTLCGTPSYVAPEVLASKG----VEYYPSKVDIWSLGC  369 (475)
T ss_pred             c-CcccccCCcceEEeccCCcceEEEecccchhhccccceehhhhcCCccccChhheecCC----eecccchheeeeccc
Confidence            6 99999999999999987 44569999999999986555555789999999999998544    22344 999999987


Q ss_pred             HHHHH
Q psy320          164 YTTFC  168 (202)
Q Consensus       164 ~~~~~  168 (202)
                      ....|
T Consensus       370 vLfvc  374 (475)
T KOG0615|consen  370 VLFVC  374 (475)
T ss_pred             eEEEE
Confidence            55533

>KOG0581|consensus

Probab=100.00  E-value=3.1e-37  Score=235.73  Aligned_cols=157  Identities=16%  Similarity=0.214  Sum_probs=132.9

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .-.+|+++++.. +  ||+||.+|++|..++   ..++++|||| +|||+++++..  +++++.....++.+|+.||.||
T Consensus       123 Qi~rEl~il~~~-~--spyIV~~ygaF~~~~---~~isI~mEYMDgGSLd~~~k~~--g~i~E~~L~~ia~~VL~GL~YL  194 (364)
T KOG0581|consen  123 QILRELEILRSC-Q--SPYIVGFYGAFYSNG---EEISICMEYMDGGSLDDILKRV--GRIPEPVLGKIARAVLRGLSYL  194 (364)
T ss_pred             HHHHHHHHHhhC-C--CCCeeeEeEEEEeCC---ceEEeehhhcCCCCHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHH
Confidence            334566666666 4  559999999999633   1699999999 99999999877  5699999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |.+.+|+||||||+|||++..+.  +||||||.+....+. ......||..||+||.+.+..      |+.++||||||+
T Consensus       195 h~~~~IIHRDIKPsNlLvNskGe--VKicDFGVS~~lvnS-~a~tfvGT~~YMsPERi~g~~------Ys~~sDIWSLGL  265 (364)
T KOG0581|consen  195 HEERKIIHRDIKPSNLLVNSKGE--VKICDFGVSGILVNS-IANTFVGTSAYMSPERISGES------YSVKSDIWSLGL  265 (364)
T ss_pred             hhccCeeeccCCHHHeeeccCCC--EEeccccccHHhhhh-hcccccccccccChhhhcCCc------CCcccceecccH
Confidence            96459999999999999999887  999999999987654 334678999999999999544      888999999998


Q ss_pred             HHHHHHHHHHHHhcCCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      ..+      .|..|+.|+.|.
T Consensus       266 sll------E~a~GrfP~~~~  280 (364)
T KOG0581|consen  266 SLL------ELAIGRFPYPPP  280 (364)
T ss_pred             HHH------HHhhCCCCCCCc
Confidence            544      666698888886

>KOG0598|consensus

Probab=100.00  E-value=3.2e-36  Score=230.06  Aligned_cols=154  Identities=22%  Similarity=0.248  Sum_probs=131.1

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ...|..+|+++ +||  +||.++-.|+    ++.++|+|+||+ ||.|...+.+.  ++|++..++.++.+|+.||.|||
T Consensus        72 ~~~Er~IL~~v-~hP--Fiv~l~ysFQ----t~~kLylVld~~~GGeLf~hL~~e--g~F~E~~arfYlaEi~lAL~~LH  142 (357)
T KOG0598|consen   72 TKAERNILSKI-KHP--FIVKLIYSFQ----TEEKLYLVLDYLNGGELFYHLQRE--GRFSEDRARFYLAEIVLALGYLH  142 (357)
T ss_pred             HHHHHHHHHhC-CCC--cEeeeEEecc----cCCeEEEEEeccCCccHHHHHHhc--CCcchhHHHHHHHHHHHHHHHHH
Confidence            34688888887 555  9999999999    788999999999 99999999877  45999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC-CCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ-SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~-~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      ++ ||+||||||+|||++.+|.  ++|+|||+|+.....+... ..+||+.|+|||++...      .|+.++|+||+|+
T Consensus       143 ~~-gIiyRDlKPENILLd~~GH--i~LtDFgL~k~~~~~~~~t~tfcGT~eYmAPEil~~~------gy~~~vDWWsLGi  213 (357)
T KOG0598|consen  143 SK-GIIYRDLKPENILLDEQGH--IKLTDFGLCKEDLKDGDATRTFCGTPEYMAPEILLGK------GYDKAVDWWSLGI  213 (357)
T ss_pred             hC-CeeeccCCHHHeeecCCCc--EEEeccccchhcccCCCccccccCCccccChHHHhcC------CCCcccchHhHHH
Confidence            96 9999999999999999998  9999999999766554444 56999999999999954      4999999999976


Q ss_pred             HHHHHHHHHHHHhcCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~  183 (202)
                      .      +..|+.|-+||..
T Consensus       214 l------lYeML~G~pPF~~  227 (357)
T KOG0598|consen  214 L------LYEMLTGKPPFYA  227 (357)
T ss_pred             H------HHHHhhCCCCCcC
Confidence            2      2244445555543

>KOG0593|consensus

Probab=100.00  E-value=4.3e-36  Score=224.35  Aligned_cols=163  Identities=22%  Similarity=0.271  Sum_probs=142.9

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      +-+.+||++|+++ +|+  |+|.+.++|.    ..+..++|+||+.-++.+-+.+.+ .+++...++.+++|++.|+.|+
T Consensus        46 KIAlREIrmLKqL-kH~--NLVnLiEVFr----rkrklhLVFE~~dhTvL~eLe~~p-~G~~~~~vk~~l~Q~l~ai~~c  117 (396)
T KOG0593|consen   46 KIALREIRMLKQL-KHE--NLVNLIEVFR----RKRKLHLVFEYCDHTVLHELERYP-NGVPSELVKKYLYQLLKAIHFC  117 (396)
T ss_pred             HHHHHHHHHHHhc-ccc--hHHHHHHHHH----hcceeEEEeeecchHHHHHHHhcc-CCCCHHHHHHHHHHHHHHhhhh
Confidence            5578999999999 555  9999999999    678999999999888888887776 5699999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC-CCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ-SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~-~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |+. +++||||||+|||++.++.  +||||||.|+....++... ....|.+|+|||++.+     +..|++++||||+|
T Consensus       118 Hk~-n~IHRDIKPENILit~~gv--vKLCDFGFAR~L~~pgd~YTDYVATRWYRaPELLvG-----DtqYG~pVDiWAiG  189 (396)
T KOG0593|consen  118 HKN-NCIHRDIKPENILITQNGV--VKLCDFGFARTLSAPGDNYTDYVATRWYRAPELLVG-----DTQYGKPVDIWAIG  189 (396)
T ss_pred             hhc-CeecccCChhheEEecCCc--EEeccchhhHhhcCCcchhhhhhhhhhccChhhhcc-----cCcCCCcccchhhh
Confidence            996 9999999999999999887  9999999999987555544 4578999999999984     46699999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFRPDPRVD  188 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (202)
                      +      ++..+..|+|-|+.+.+.+
T Consensus       190 C------v~aEl~~G~pL~PG~SDiD  209 (396)
T KOG0593|consen  190 C------VFAELLTGEPLWPGRSDID  209 (396)
T ss_pred             H------HHHHHhcCCcCCCCcchHH
Confidence            7      5667777999999877664

>KOG0616|consensus

Probab=100.00  E-value=4.5e-35  Score=218.07  Aligned_cols=153  Identities=18%  Similarity=0.255  Sum_probs=130.5

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|..+|+.+. ||  +++++++.|.    +.+++|+||||. ||.|.+++++.  ++|++..++.++.||+.|++|||
T Consensus        91 ~~nEk~vL~~v~-~P--Flv~l~~t~~----d~~~lymvmeyv~GGElFS~Lrk~--~rF~e~~arFYAAeivlAleylH  161 (355)
T KOG0616|consen   91 THNEKRVLKAVS-HP--FLVKLYGTFK----DNSNLYMVMEYVPGGELFSYLRKS--GRFSEPHARFYAAEIVLALEYLH  161 (355)
T ss_pred             HhhHHHHHhhcc-Cc--eeEEEEEeec----cCCeEEEEEeccCCccHHHHHHhc--CCCCchhHHHHHHHHHHHHHHHH
Confidence            457888888884 55  9999999999    677999999999 99999999887  46999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~  164 (202)
                      +. +|++|||||+|||++++|.  +|++|||.|+...  +.-...||||.|+|||++.      ..+|+.++|.||+|+.
T Consensus       162 ~~-~iiYRDLKPENiLlD~~G~--iKitDFGFAK~v~--~rT~TlCGTPeYLAPEii~------sk~ynkavDWWalGVL  230 (355)
T KOG0616|consen  162 SL-DIIYRDLKPENLLLDQNGH--IKITDFGFAKRVS--GRTWTLCGTPEYLAPEIIQ------SKGYNKAVDWWALGVL  230 (355)
T ss_pred             hc-CeeeccCChHHeeeccCCc--EEEEeccceEEec--CcEEEecCCccccChHHhh------cCCCCcchhHHHHHHH
Confidence            95 9999999999999999988  9999999999874  3344679999999999999      4558899999999863


Q ss_pred             HHHHHHHHHHHhcCCCCCCC
Q psy320          165 TTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~  184 (202)
                      .      ..++.|.+||..+
T Consensus       231 I------YEMlaG~pPF~~~  244 (355)
T KOG0616|consen  231 I------YEMLAGYPPFYDD  244 (355)
T ss_pred             H------HHHHcCCCCCcCC
Confidence            2      2444455555443

>KOG0592|consensus

Probab=100.00  E-value=2.2e-34  Score=229.04  Aligned_cols=158  Identities=23%  Similarity=0.324  Sum_probs=135.3

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      +-..|-..|.+|.+||  .|++|+-.|+    +...+|+|+||+ +|+|.+++++.+  .|++..++.++.||+.|++||
T Consensus       119 YV~~Ek~~l~~L~~hP--givkLy~TFQ----D~~sLYFvLe~A~nGdll~~i~K~G--sfde~caR~YAAeIldAleyl  190 (604)
T KOG0592|consen  119 YVTREKEALTQLSGHP--GIVKLYFTFQ----DEESLYFVLEYAPNGDLLDLIKKYG--SFDETCARFYAAEILDALEYL  190 (604)
T ss_pred             hhhHHHHHHHHhhCCC--CeEEEEEEee----cccceEEEEEecCCCcHHHHHHHhC--cchHHHHHHHHHHHHHHHHHH
Confidence            3446777788886566  9999999999    677999999999 999999999985  499999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC--------------CCCCCCccchhhHHHHhhhhccC
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ--------------QSSSKTKSKIFCEILEQCRLNQD  149 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~--------------~~~~~~~~~~ape~~~~~~~~~~  149 (202)
                      |+. |||||||||+|||++.+++  ++|+|||.|+.+.+....              ..+.||-.|.+||++....    
T Consensus       191 H~~-GIIHRDlKPENILLd~dmh--ikITDFGsAK~l~~~~~~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~~~~----  263 (604)
T KOG0592|consen  191 HSN-GIIHRDLKPENILLDKDGH--IKITDFGSAKILSPSQKSQENPVDPNQASSRRSSFVGTAEYVSPELLNDSP----  263 (604)
T ss_pred             Hhc-CceeccCChhheeEcCCCc--EEEeeccccccCChhhccccCccCcccccCcccceeeeecccCHHHhcCCC----
Confidence            995 9999999999999999988  999999999987653221              2368999999999999443    


Q ss_pred             CCCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy320          150 FRLDPRVDPTSIKMYTTFCEILEQCRLNHQDFRPDP  185 (202)
Q Consensus       150 ~~~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~~~~  185 (202)
                        .++.+|+|++|+      ++.||++|.|||+...
T Consensus       264 --~~~~sDiWAlGC------ilyQmlaG~PPFra~N  291 (604)
T KOG0592|consen  264 --AGPSSDLWALGC------ILYQMLAGQPPFRAAN  291 (604)
T ss_pred             --CCcccchHHHHH------HHHHHhcCCCCCcccc
Confidence              677999999998      4558888998888643

>KOG0575|consensus

Probab=100.00  E-value=2.9e-34  Score=230.98  Aligned_cols=148  Identities=23%  Similarity=0.338  Sum_probs=128.9

Q ss_pred             chHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Q psy320            3 TNYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLN   81 (202)
Q Consensus         3 ~~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~   81 (202)
                      ++.-.+||++.+.+ +||  |||+++++|+    +..++|+|+|.| .++|..++++.  +.+.+.+++.+.+||+.||.
T Consensus        62 reKv~~EIeIHr~L-~Hp--nIV~f~~~FE----Ds~nVYivLELC~~~sL~el~Krr--k~ltEpEary~l~QIv~Glk  132 (592)
T KOG0575|consen   62 REKVLNEIEIHRSL-KHP--NIVQFYHFFE----DSNNVYIVLELCHRGSLMELLKRR--KPLTEPEARYFLRQIVEGLK  132 (592)
T ss_pred             HHHHHHHHHHHHhc-CCC--cEEeeeeEee----cCCceEEEEEecCCccHHHHHHhc--CCCCcHHHHHHHHHHHHHHH
Confidence            34556899999999 566  9999999999    688999999999 99999999865  45999999999999999999


Q ss_pred             HHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC-CCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           82 HLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ-SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        82 ~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~-~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      |||+. +|+|||||-.|+|++.+.+  |||+|||+|.....+++.. ..||||.|+|||++..      ...+..+||||
T Consensus       133 YLH~~-~IiHRDLKLGNlfL~~~~~--VKIgDFGLAt~le~~~Erk~TlCGTPNYIAPEVl~k------~gHsfEvDiWS  203 (592)
T KOG0575|consen  133 YLHSL-GIIHRDLKLGNLFLNENMN--VKIGDFGLATQLEYDGERKKTLCGTPNYIAPEVLNK------SGHSFEVDIWS  203 (592)
T ss_pred             HHHhc-CceecccchhheeecCcCc--EEecccceeeeecCcccccceecCCCcccChhHhcc------CCCCCchhhhh
Confidence            99996 9999999999999998877  9999999999987664444 6899999999999993      33777899999


Q ss_pred             HHH--HHHHH
Q psy320          161 IKM--YTTFC  168 (202)
Q Consensus       161 l~~--~~~~~  168 (202)
                      +|+  |.++.
T Consensus       204 lGcvmYtLL~  213 (592)
T KOG0575|consen  204 LGCVMYTLLV  213 (592)
T ss_pred             hhhHHHhhhh
Confidence            964  44443

>KOG0583|consensus

Probab=100.00  E-value=7.4e-34  Score=226.07  Aligned_cols=157  Identities=18%  Similarity=0.243  Sum_probs=131.1

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+.++++++.||  ||+++++++.    ...++++||||+ +|+|.+++...  +++.+..++.+++|+++|+.|+
T Consensus        65 ~i~rEi~~~~~~~~Hp--nI~~l~ev~~----t~~~~~ivmEy~~gGdL~~~i~~~--g~l~E~~ar~~F~Qlisav~y~  136 (370)
T KOG0583|consen   65 LIKREISILRRLRSHP--NIIRLLEVFA----TPTKIYIVMEYCSGGDLFDYIVNK--GRLKEDEARKYFRQLISAVAYC  136 (370)
T ss_pred             hhHHHHHHHHHhccCC--CEeEEEEEEe----cCCeEEEEEEecCCccHHHHHHHc--CCCChHHHHHHHHHHHHHHHHH
Confidence            3457999999995577  9999999999    677899999999 89999999884  5699999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecC-CcceeEEeeccccccc-ccccCCCCCCCCccchhhHHHHhhhhccCCCCC-CCcchhh
Q psy320           84 HTKHNLVHTSIKPESIFFKAD-HVYIMTLINIQQATTH-QECHDQQSSSKTKSKIFCEILEQCRLNQDFRLD-PRVDPTS  160 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~-~~~~~~l~Dfg~a~~~-~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~-~~~Diws  160 (202)
                      |++ ||+||||||+|||++.+ ++  +||+|||++... .........+|++.|+|||++....     .|+ .++|+||
T Consensus       137 H~~-gi~HRDLK~ENilld~~~~~--~Kl~DFG~s~~~~~~~~~l~t~cGsp~Y~aPEvl~~~~-----~Y~g~~aDvWS  208 (370)
T KOG0583|consen  137 HSR-GIVHRDLKPENILLDGNEGN--LKLSDFGLSAISPGEDGLLKTFCGSPAYAAPEVLSGKG-----TYSGKAADVWS  208 (370)
T ss_pred             HhC-CEeeCCCCHHHEEecCCCCC--EEEeccccccccCCCCCcccCCCCCcccCCHHHhCCCC-----CcCCchhhhhh
Confidence            996 99999999999999998 66  999999999988 4455666789999999999999432     165 4899999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCC
Q psy320          161 IKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       161 l~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +|+..+      .++.|..||..
T Consensus       209 ~GViLy------~ml~G~~PF~d  225 (370)
T KOG0583|consen  209 LGVILY------VLLCGRLPFDD  225 (370)
T ss_pred             hHHHHH------HHHhCCCCCCC
Confidence            976322      34445555543

>KOG0599|consensus

Probab=100.00  E-value=1.1e-34  Score=214.40  Aligned_cols=172  Identities=20%  Similarity=0.292  Sum_probs=145.3

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ++..+|+.+|++++.||  +|+.+.++++    +....++|+|.| .|.|.+++...-.  +++...+.+++|++.|+.|
T Consensus        67 EaT~~Ev~ILRqv~GHP--~II~l~D~ye----s~sF~FlVFdl~prGELFDyLts~Vt--lSEK~tR~iMrqlfegVey  138 (411)
T KOG0599|consen   67 EATRQEISILRQVMGHP--YIIDLQDVYE----SDAFVFLVFDLMPRGELFDYLTSKVT--LSEKETRRIMRQLFEGVEY  138 (411)
T ss_pred             HHHHHHHHHHHHhcCCC--cEEEeeeecc----CcchhhhhhhhcccchHHHHhhhhee--ecHHHHHHHHHHHHHHHHH
Confidence            55678999999998888  9999999999    678999999999 9999999987654  9999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      +|.+ +||||||||+|||++.+.+  ++|+|||.|....+.......||||+|+|||.+...-+.....|+..+|+||+|
T Consensus       139 lHa~-~IVHRDLKpENILlddn~~--i~isDFGFa~~l~~GekLrelCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~G  215 (411)
T KOG0599|consen  139 LHAR-NIVHRDLKPENILLDDNMN--IKISDFGFACQLEPGEKLRELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACG  215 (411)
T ss_pred             HHHh-hhhhcccChhheeeccccc--eEEeccceeeccCCchhHHHhcCCCcccChhheeeecccCCCCccchhhHHHHH
Confidence            9997 9999999999999998877  999999999988754444568999999999999866666777889999999996


Q ss_pred             H--HHHHH-----------HHHHHHHhcCCCCCCCCC
Q psy320          163 M--YTTFC-----------EILEQCRLNHQDFRPDPR  186 (202)
Q Consensus       163 ~--~~~~~-----------~~~~~~~~~~~~~~~~~~  186 (202)
                      +  |.++.           ..+-.+..|+..|++...
T Consensus       216 VImyTLLaGcpPFwHRkQmlMLR~ImeGkyqF~speW  252 (411)
T KOG0599|consen  216 VIMYTLLAGCPPFWHRKQMLMLRMIMEGKYQFRSPEW  252 (411)
T ss_pred             HHHHHHHcCCCchhHHHHHHHHHHHHhcccccCCcch
Confidence            4  44433           334445567777765543

>KOG0192|consensus

Probab=100.00  E-value=2.2e-33  Score=221.90  Aligned_cols=151  Identities=17%  Similarity=0.276  Sum_probs=127.8

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCce-EEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGT-HVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLN   81 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~-~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~   81 (202)
                      +.+.+|+.+|.++ +||  |||+++|++.    +.. ..++||||+ +|+|.+++.....+.++...+..++.+|+.||+
T Consensus        84 ~~f~~E~~il~~l-~Hp--NIV~f~G~~~----~~~~~~~iVtEy~~~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~  156 (362)
T KOG0192|consen   84 KAFRREASLLSRL-RHP--NIVQFYGACT----SPPGSLCIVTEYMPGGSLSVLLHKKRKRKLPLKVRLRIALDIARGME  156 (362)
T ss_pred             HHHHHHHHHHHhC-CCC--CeeeEEEEEc----CCCCceEEEEEeCCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHH
Confidence            4678899999998 555  9999999998    344 799999999 999999998754467999999999999999999


Q ss_pred             HHHhhCC-ccccCCCCCceeeecCC-cceeEEeecccccccccc-cCCCCCCCCccchhhHHHHhhhhccCCCCCCCcch
Q psy320           82 HLHTKHN-LVHTSIKPESIFFKADH-VYIMTLINIQQATTHQEC-HDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDP  158 (202)
Q Consensus        82 ~lh~~~~-ivH~dl~p~nil~~~~~-~~~~~l~Dfg~a~~~~~~-~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Di  158 (202)
                      |||++ + |+||||||+|||++.+. .  +||+|||+++..... .......||+.|+|||++...    ...|+.++|+
T Consensus       157 YLH~~-~~iIHrDLK~~NiLv~~~~~~--~KI~DFGlsr~~~~~~~~~~~~~GT~~wMAPEv~~~~----~~~~~~K~Dv  229 (362)
T KOG0192|consen  157 YLHSE-GPIIHRDLKSDNILVDLKGKT--LKIADFGLSREKVISKTSMTSVAGTYRWMAPEVLRGE----KSPYTEKSDV  229 (362)
T ss_pred             HHhcC-CCeeecccChhhEEEcCCCCE--EEECCCccceeeccccccccCCCCCccccChhhhcCC----CCcCCccchh
Confidence            99996 9 99999999999999886 5  999999999887543 233346899999999999944    3458999999


Q ss_pred             hhHHH--HHHHH
Q psy320          159 TSIKM--YTTFC  168 (202)
Q Consensus       159 wsl~~--~~~~~  168 (202)
                      ||+|+  |.+++
T Consensus       230 ySFgIvlWEl~t  241 (362)
T KOG0192|consen  230 YSFGIVLWELLT  241 (362)
T ss_pred             hhHHHHHHHHHH
Confidence            99965  44444

>KOG0659|consensus

Probab=100.00  E-value=1.1e-33  Score=207.95  Aligned_cols=163  Identities=21%  Similarity=0.239  Sum_probs=139.3

Q ss_pred             chHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            3 TNYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         3 ~~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +..+.+||+.|+.++ |+  ||+.+.++|.    ..+.+.+|+||+..+|+.+++... ..++.+.++.++.+++.|+.|
T Consensus        45 ~~talREIK~Lqel~-h~--nIi~LiD~F~----~~~~l~lVfEfm~tdLe~vIkd~~-i~l~pa~iK~y~~m~LkGl~y  116 (318)
T KOG0659|consen   45 NRTALREIKLLQELK-HP--NIIELIDVFP----HKSNLSLVFEFMPTDLEVVIKDKN-IILSPADIKSYMLMTLKGLAY  116 (318)
T ss_pred             cHHHHHHHHHHHHcc-Cc--chhhhhhhcc----CCCceEEEEEeccccHHHHhcccc-cccCHHHHHHHHHHHHHHHHH
Confidence            356789999999994 55  9999999999    577899999999999999997654 569999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC-CCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ-SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~-~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      ||++ .|+||||||.|+|++.++.  +|++|||+|+.+....... ....|.+|+|||++.+     .+.|+..+|+||.
T Consensus       117 ~H~~-~IlHRDlKPnNLLis~~g~--lKiADFGLAr~f~~p~~~~~~~V~TRWYRAPELLfG-----sr~Yg~~VDmWav  188 (318)
T KOG0659|consen  117 CHSK-WILHRDLKPNNLLISSDGQ--LKIADFGLARFFGSPNRIQTHQVVTRWYRAPELLFG-----SRQYGTGVDMWAV  188 (318)
T ss_pred             HHhh-hhhcccCCccceEEcCCCc--EEeecccchhccCCCCcccccceeeeeccChHHhcc-----chhcCCcchhhhH
Confidence            9997 9999999999999999987  9999999999987654443 3578999999999984     4568899999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCCC
Q psy320          162 KMYTTFCEILEQCRLNHQDFRPDPRV  187 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (202)
                      |+      ++..++.+.|-|+-+.+.
T Consensus       189 GC------I~AELllr~P~fpG~sDi  208 (318)
T KOG0659|consen  189 GC------IFAELLLRVPFFPGDSDI  208 (318)
T ss_pred             HH------HHHHHHccCCCCCCCchH
Confidence            97      555666677777655544

>KOG0591|consensus

Probab=100.00  E-value=1.7e-34  Score=214.02  Aligned_cols=144  Identities=21%  Similarity=0.213  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeee-eEEecCCceEEEEEEccc-cccHHHHHHHcC--CCCCCHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDH-FQVTGINGTHVCTVTEIM-AECLCNYMIRQK--FQPAPLVVAKIIVNQILEGL   80 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~-~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~--~~~~~~~~~~~~~~qi~~~l   80 (202)
                      +-..|+.+|++| +||  |||+++++ |..   +..-+++|||+| +|+|.+.++...  ++.+++..++.++.|++.||
T Consensus        64 ~~v~Ei~lLkQL-~Hp--NIVqYy~~~f~~---~~evlnivmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL  137 (375)
T KOG0591|consen   64 DCVKEISLLKQL-NHP--NIVQYYAHSFIE---DNEVLNIVMELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRAL  137 (375)
T ss_pred             HHHHHHHHHHhc-CCc--hHHHHHHHhhhc---cchhhHHHHHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHH
Confidence            344688888888 555  99999995 542   233589999999 999999998543  56799999999999999999


Q ss_pred             HHHHh--hCC--ccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCC
Q psy320           81 NHLHT--KHN--LVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPR  155 (202)
Q Consensus        81 ~~lh~--~~~--ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~  155 (202)
                      .++|.  . +  |+||||||.||+++.++.  +||.|||+++.+.... ...+..|||.||+||.+.      ..+|+.+
T Consensus       138 ~~cH~~~~-r~~VmHRDIKPaNIFl~~~gv--vKLGDfGL~r~l~s~~tfA~S~VGTPyYMSPE~i~------~~~Y~~k  208 (375)
T KOG0591|consen  138 YHCHSKIP-RGTVMHRDIKPANIFLTANGV--VKLGDFGLGRFLSSKTTFAHSLVGTPYYMSPERIH------ESGYNFK  208 (375)
T ss_pred             HHHhcccc-ccceeeccCcchheEEcCCCc--eeeccchhHhHhcchhHHHHhhcCCCcccCHHHHh------cCCCCcc
Confidence            99999  4 4  899999999999999887  9999999999986432 223578999999999999      4559999


Q ss_pred             cchhhHHH
Q psy320          156 VDPTSIKM  163 (202)
Q Consensus       156 ~Diwsl~~  163 (202)
                      +|+||+|+
T Consensus       209 SDiWslGC  216 (375)
T KOG0591|consen  209 SDIWSLGC  216 (375)
T ss_pred             hhHHHHHH
Confidence            99999974

>KOG0661|consensus

Probab=100.00  E-value=5e-34  Score=223.95  Aligned_cols=143  Identities=22%  Similarity=0.278  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q psy320            7 TNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTK   86 (202)
Q Consensus         7 ~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~   86 (202)
                      .+|++.|+++..||  ||+++.+++.+   +.+.+++|||||.++|+++++.+ .+.|++..++.|+.||+.||.|+|..
T Consensus        56 LREvksL~kln~hp--niikL~Evi~d---~~~~L~fVfE~Md~NLYqLmK~R-~r~fse~~irnim~QilqGL~hiHk~  129 (538)
T KOG0661|consen   56 LREVKSLRKLNPHP--NIIKLKEVIRD---NDRILYFVFEFMDCNLYQLMKDR-NRLFSESDIRNIMYQILQGLAHIHKH  129 (538)
T ss_pred             HHHHHHHHhcCCCC--cchhhHHHhhc---cCceEeeeHHhhhhhHHHHHhhc-CCcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            47888888884466  99999999984   33499999999999999999887 57899999999999999999999995


Q ss_pred             CCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           87 HNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        87 ~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                       |+.|||+||||||+.....  +||+|||+|+......-......|.+|+|||++....     -|+.++|+||+|+
T Consensus       130 -GfFHRDlKPENiLi~~~~~--iKiaDFGLARev~SkpPYTeYVSTRWYRAPEvLLrs~-----~Ys~pvD~wA~Gc  198 (538)
T KOG0661|consen  130 -GFFHRDLKPENILISGNDV--IKIADFGLAREVRSKPPYTEYVSTRWYRAPEVLLRSG-----YYSSPVDMWAVGC  198 (538)
T ss_pred             -CcccccCChhheEecccce--eEecccccccccccCCCcchhhhcccccchHHhhhcc-----ccCCchHHHHHHH
Confidence             9999999999999986554  9999999999886544444567899999999998544     3778999999985

>KOG0600|consensus

Probab=100.00  E-value=1.4e-33  Score=222.83  Aligned_cols=147  Identities=22%  Similarity=0.195  Sum_probs=127.6

Q ss_pred             chHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            3 TNYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         3 ~~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ..+..+||.+|++| +||  ||+++.+.....  ....+|||+|||..+|.-++...+ -+|++.+++.++.|++.||.|
T Consensus       160 ~~t~~REI~ILr~l-~Hp--NIikL~eivt~~--~~~siYlVFeYMdhDL~GLl~~p~-vkft~~qIKc~mkQLl~Gl~~  233 (560)
T KOG0600|consen  160 PITAIREIKILRRL-DHP--NIIKLEEIVTSK--LSGSIYLVFEYMDHDLSGLLSSPG-VKFTEPQIKCYMKQLLEGLEY  233 (560)
T ss_pred             hHHHHHHHHHHHhc-CCC--cccceeeEEEec--CCceEEEEEecccchhhhhhcCCC-cccChHHHHHHHHHHHHHHHH
Confidence            45778999999999 676  999999998742  246999999999999999886643 459999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC--CCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ--QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~--~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      +|.+ ||+|||||.+|||++.++.  +||+|||+|+++......  .....|.+|++||++.+     ...|+.++|+||
T Consensus       234 cH~~-gvlHRDIK~SNiLidn~G~--LKiaDFGLAr~y~~~~~~~~T~rVvTLWYRpPELLLG-----~t~Yg~aVDlWS  305 (560)
T KOG0600|consen  234 CHSR-GVLHRDIKGSNILIDNNGV--LKIADFGLARFYTPSGSAPYTSRVVTLWYRPPELLLG-----ATSYGTAVDLWS  305 (560)
T ss_pred             Hhhc-CeeeccccccceEEcCCCC--EEeccccceeeccCCCCcccccceEEeeccChHHhcC-----Ccccccceeehh
Confidence            9997 9999999999999999888  999999999988764432  34578999999999994     567999999999


Q ss_pred             HHH
Q psy320          161 IKM  163 (202)
Q Consensus       161 l~~  163 (202)
                      +|+
T Consensus       306 ~GC  308 (560)
T KOG0600|consen  306 VGC  308 (560)
T ss_pred             hhH
Confidence            986

>KOG0578|consensus

Probab=100.00  E-value=2.3e-33  Score=224.14  Aligned_cols=155  Identities=19%  Similarity=0.315  Sum_probs=134.7

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +--.+|+.+++.. +  |+|||.+++.|..    +..+|.||||+ ||+|.++.....   +++.++..++++++.||.|
T Consensus       315 eLilnEi~Vm~~~-~--H~NiVnfl~Sylv----~deLWVVMEym~ggsLTDvVt~~~---~~E~qIA~Icre~l~aL~f  384 (550)
T KOG0578|consen  315 ELLLNEILVMRDL-H--HPNIVNFLDSYLV----GDELWVVMEYMEGGSLTDVVTKTR---MTEGQIAAICREILQGLKF  384 (550)
T ss_pred             hhhHHHHHHHHhc-c--chHHHHHHHHhcc----cceeEEEEeecCCCchhhhhhccc---ccHHHHHHHHHHHHHHHHH
Confidence            3446788888877 4  5599999999994    57999999999 999999997754   9999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC-CCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ-SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~-~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      ||.+ ||+|||||.+|||++.++.  +||+|||+|..+......+ ...||++|+|||++....      |++++|||||
T Consensus       385 LH~~-gIiHrDIKSDnILL~~~g~--vKltDFGFcaqi~~~~~KR~TmVGTPYWMAPEVvtrk~------YG~KVDIWSL  455 (550)
T KOG0578|consen  385 LHAR-GIIHRDIKSDNILLTMDGS--VKLTDFGFCAQISEEQSKRSTMVGTPYWMAPEVVTRKP------YGPKVDIWSL  455 (550)
T ss_pred             HHhc-ceeeeccccceeEeccCCc--EEEeeeeeeeccccccCccccccCCCCccchhhhhhcc------cCccccchhh
Confidence            9997 9999999999999999988  9999999999988766554 578999999999999544      9999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCC
Q psy320          162 KMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      |+..+      .|..|.|+|--
T Consensus       456 GIMaI------EMveGEPPYln  471 (550)
T KOG0578|consen  456 GIMAI------EMVEGEPPYLN  471 (550)
T ss_pred             hhHHH------HHhcCCCCccC
Confidence            98544      66778888753

>KOG0588|consensus

Probab=100.00  E-value=1e-32  Score=223.96  Aligned_cols=152  Identities=24%  Similarity=0.336  Sum_probs=132.7

Q ss_pred             HHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            7 TNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         7 ~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      .+||.+++.+ .||  ||++++++++    +..++|+|.||+ +|.|++++.+.+  ++++..+.++++||+.|+.|+|.
T Consensus        60 erEIviMkLi-~Hp--nVl~LydVwe----~~~~lylvlEyv~gGELFdylv~kG--~l~e~eaa~ff~QIi~gv~yCH~  130 (786)
T KOG0588|consen   60 EREIVIMKLI-EHP--NVLRLYDVWE----NKQHLYLVLEYVPGGELFDYLVRKG--PLPEREAAHFFRQILDGVSYCHA  130 (786)
T ss_pred             hhhhHHHHHh-cCC--Ceeeeeeeec----cCceEEEEEEecCCchhHHHHHhhC--CCCCHHHHHHHHHHHHHHHHHhh
Confidence            4688888888 566  9999999999    688999999999 999999998874  59999999999999999999999


Q ss_pred             hCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCC-CcchhhHHHH
Q psy320           86 KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDP-RVDPTSIKMY  164 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~-~~Diwsl~~~  164 (202)
                       .+|+|||+||+|+|++..++  +||+|||.|..-.+...-...||.+.|.+||++.+.+      |+- ++|+||+|+ 
T Consensus       131 -~~icHRDLKpENlLLd~~~n--IKIADFGMAsLe~~gklLeTSCGSPHYA~PEIV~G~p------YdG~~sDVWSCGV-  200 (786)
T KOG0588|consen  131 -FNICHRDLKPENLLLDVKNN--IKIADFGMASLEVPGKLLETSCGSPHYAAPEIVSGRP------YDGRPSDVWSCGV-  200 (786)
T ss_pred             -hcceeccCCchhhhhhcccC--EeeeccceeecccCCccccccCCCcccCCchhhcCCC------CCCCccccchhHH-
Confidence             69999999999999998887  9999999999887666666789999999999999554      654 899999987 


Q ss_pred             HHHHHHHHHHHhcCCCCC
Q psy320          165 TTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~  182 (202)
                           ++-.++.|..||.
T Consensus       201 -----ILfALLtG~LPFd  213 (786)
T KOG0588|consen  201 -----ILFALLTGKLPFD  213 (786)
T ss_pred             -----HHHHHHhCCCCCC
Confidence                 3335555776665

>KOG0611|consensus

Probab=100.00  E-value=9.2e-33  Score=214.03  Aligned_cols=161  Identities=17%  Similarity=0.243  Sum_probs=137.9

Q ss_pred             HHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            7 TNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         7 ~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      .+||+++..| +||  ||++++++|+    +.+.+.+||||. +|.|++++.+.+  .+++..++++++||++|+.|+|+
T Consensus       101 RREIeIMSsL-NHP--hII~IyEVFE----NkdKIvivMEYaS~GeLYDYiSer~--~LsErEaRhfFRQIvSAVhYCHk  171 (668)
T KOG0611|consen  101 RREIEIMSSL-NHP--HIIQIYEVFE----NKDKIVIVMEYASGGELYDYISERG--SLSEREARHFFRQIVSAVHYCHK  171 (668)
T ss_pred             HHHHHHHhhc-CCC--ceeehhhhhc----CCceEEEEEEecCCccHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHhh
Confidence            4688888888 666  9999999999    788999999999 999999998874  49999999999999999999999


Q ss_pred             hCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCC-CCCcchhhHHHH
Q psy320           86 KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRL-DPRVDPTSIKMY  164 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~-~~~~Diwsl~~~  164 (202)
                      . +++|||||.+|||++.+++  +||+|||++..+........+||++.|..||++-+.+      | ++.+|.||||++
T Consensus       172 n-rVvHRDLKLENILLD~N~N--iKIADFGLSNly~~~kfLqTFCGSPLYASPEIvNG~P------Y~GPEVDsWsLGvL  242 (668)
T KOG0611|consen  172 N-RVVHRDLKLENILLDQNNN--IKIADFGLSNLYADKKFLQTFCGSPLYASPEIVNGTP------YKGPEVDSWSLGVL  242 (668)
T ss_pred             c-cceecccchhheeecCCCC--eeeeccchhhhhccccHHHHhcCCcccCCccccCCCC------CCCCccchhhHHHH
Confidence            6 9999999999999999988  9999999999987666666889999999999998554      5 568999999865


Q ss_pred             HHHH-------------HHHHHHHhcCCCCCCCC
Q psy320          165 TTFC-------------EILEQCRLNHQDFRPDP  185 (202)
Q Consensus       165 ~~~~-------------~~~~~~~~~~~~~~~~~  185 (202)
                      .+..             .++.|+-+|-...++++
T Consensus       243 LYtLVyGtMPFDG~Dhk~lvrQIs~GaYrEP~~P  276 (668)
T KOG0611|consen  243 LYTLVYGTMPFDGRDHKRLVRQISRGAYREPETP  276 (668)
T ss_pred             HHHHhhcccccCCchHHHHHHHhhcccccCCCCC
Confidence            4422             56666666655555444

>KOG0658|consensus

Probab=100.00  E-value=1.1e-33  Score=215.89  Aligned_cols=167  Identities=20%  Similarity=0.285  Sum_probs=137.0

Q ss_pred             chHHHHHHHHHHHHhcCCCccceeeeeeeEEecCC-ceEEEEEEccccccHHHHHHHcC--CCCCCHHHHHHHHHHHHHH
Q psy320            3 TNYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGIN-GTHVCTVTEIMAECLCNYMIRQK--FQPAPLVVAKIIVNQILEG   79 (202)
Q Consensus         3 ~~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~-~~~~~lv~e~~~~sL~~~~~~~~--~~~~~~~~~~~~~~qi~~~   79 (202)
                      +++..+|+++|+++ +||  |||++.-+|..+..+ .-+..+||||+..+|.++++...  +.+++.-.++.+..|++.|
T Consensus        61 ~r~knrEl~im~~l-~Hp--NIV~L~~~f~~~~~~d~~~lnlVleymP~tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrg  137 (364)
T KOG0658|consen   61 KRYKNRELQIMRKL-DHP--NIVRLLYFFSSSTESDEVYLNLVLEYMPETLYRVIRHYTRANQRMPLLEIKLYTYQLFRG  137 (364)
T ss_pred             CCcCcHHHHHHHhc-CCc--CeeeEEEEEEecCCCchhHHHHHHHhchHHHHHHHHHHhhcCCCCceeeeHHHHHHHHHH
Confidence            34556799999977 666  999999999976644 34777999999999999998532  3569999999999999999


Q ss_pred             HHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           80 LNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        80 l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      |.|||+ .||+||||||+|+|++.+. +.+||||||+|+.........+-..+..|+|||++.+     ...|+.++|+|
T Consensus       138 l~yLh~-~~IcHRDIKPqNlLvD~~t-g~LKicDFGSAK~L~~~epniSYicSRyYRaPELifg-----a~~Yt~~IDiW  210 (364)
T KOG0658|consen  138 LAYLHS-HGICHRDIKPQNLLVDPDT-GVLKICDFGSAKVLVKGEPNISYICSRYYRAPELIFG-----ATEYTTSIDIW  210 (364)
T ss_pred             HHHHHh-cCcccCCCChheEEEcCCC-CeEEeccCCcceeeccCCCceeEEEeccccCHHHHcC-----ccccCceeEEh
Confidence            999999 5999999999999999874 3599999999998765444445678889999999984     45688999999


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy320          160 SIKMYTTFCEILEQCRLNHQDFRPDP  185 (202)
Q Consensus       160 sl~~~~~~~~~~~~~~~~~~~~~~~~  185 (202)
                      |.|+      ++..++.|.|-|+.+.
T Consensus       211 SaGC------V~aELl~g~plFpG~s  230 (364)
T KOG0658|consen  211 SAGC------VMAELLKGQPLFPGDS  230 (364)
T ss_pred             hhhH------HHHHHhcCCcccCCCC
Confidence            9997      4556666888887644

>KOG0197|consensus

Probab=100.00  E-value=4.3e-32  Score=215.75  Aligned_cols=170  Identities=20%  Similarity=0.248  Sum_probs=140.2

Q ss_pred             CCchHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Q psy320            1 MHTNYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEG   79 (202)
Q Consensus         1 ~~~~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~   79 (202)
                      |....+.+|++++++|+ |+  |||++++++.    .+.-+||||||| .|||.++++...++.+.......++.||+.|
T Consensus       243 m~~~~f~~Ea~iMk~L~-H~--~lV~l~gV~~----~~~piyIVtE~m~~GsLl~yLr~~~~~~l~~~~Ll~~a~qIaeG  315 (468)
T KOG0197|consen  243 MSPEAFLREAQIMKKLR-HE--KLVKLYGVCT----KQEPIYIVTEYMPKGSLLDYLRTREGGLLNLPQLLDFAAQIAEG  315 (468)
T ss_pred             cChhHHHHHHHHHHhCc-cc--CeEEEEEEEe----cCCceEEEEEecccCcHHHHhhhcCCCccchHHHHHHHHHHHHH
Confidence            45577889999999994 55  9999999999    344799999999 9999999998666789999999999999999


Q ss_pred             HHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC--CCCCCCCccchhhHHHHhhhhccCCCCCCCcc
Q psy320           80 LNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD--QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVD  157 (202)
Q Consensus        80 l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~--~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~D  157 (202)
                      |.||+++ ++|||||...|||++.+..  +||+|||+|+.......  .....-...|.|||.+.+..      ++.++|
T Consensus       316 M~YLes~-~~IHRDLAARNiLV~~~~~--vKIsDFGLAr~~~d~~Y~~~~~~kfPIkWtAPEa~~~~~------FS~kSD  386 (468)
T KOG0197|consen  316 MAYLESK-NYIHRDLAARNILVDEDLV--VKISDFGLARLIGDDEYTASEGGKFPIKWTAPEALNYGK------FSSKSD  386 (468)
T ss_pred             HHHHHhC-CccchhhhhhheeeccCce--EEEcccccccccCCCceeecCCCCCCceecCHHHHhhCC------cccccc
Confidence            9999997 9999999999999998876  99999999995432211  11223344799999999665      888999


Q ss_pred             hhhHHH--HHHHH-----------------------------------HHHHHHHhcCCCCCCCCC
Q psy320          158 PTSIKM--YTTFC-----------------------------------EILEQCRLNHQDFRPDPR  186 (202)
Q Consensus       158 iwsl~~--~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~  186 (202)
                      +||+|+  |++++                                   +++..|+..+|..||+..
T Consensus       387 VWSFGVlL~E~fT~G~~py~~msn~ev~~~le~GyRlp~P~~CP~~vY~lM~~CW~~~P~~RPtF~  452 (468)
T KOG0197|consen  387 VWSFGVLLWELFTYGRVPYPGMSNEEVLELLERGYRLPRPEGCPDEVYELMKSCWHEDPEDRPTFE  452 (468)
T ss_pred             eeehhhhHHHHhccCCCCCCCCCHHHHHHHHhccCcCCCCCCCCHHHHHHHHHHhhCCcccCCCHH
Confidence            999964  55555                                   777777777777777764

>KOG0589|consensus

Probab=99.98  E-value=3e-32  Score=215.62  Aligned_cols=168  Identities=22%  Similarity=0.274  Sum_probs=145.1

Q ss_pred             chHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Q psy320            3 TNYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLN   81 (202)
Q Consensus         3 ~~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~   81 (202)
                      ++.+.+|+.+++++ .||  |||.+.+.|..   ++...|+||+|+ ||++.+.+.+..+..|++..+..|+.|++.|+.
T Consensus        47 r~~A~~E~~lis~~-~hP--~iv~y~ds~~~---~~~~l~Ivm~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~  120 (426)
T KOG0589|consen   47 RRSAIQEMDLLSKL-LHP--NIVEYKDSFEE---DGQLLCIVMEYCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVN  120 (426)
T ss_pred             hHHHHHHHHHHHhc-cCC--Ceeeeccchhc---CCceEEEEEeecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHH
Confidence            34678899999998 455  99999999996   444699999999 999999999877677999999999999999999


Q ss_pred             HHHhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           82 HLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        82 ~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      |||++ +|+|||||+.|||+..++.  ++|.|||+|+..++.. ......||+.|++||++.      +.+|+.++||||
T Consensus       121 ylH~~-~iLHRDlK~~Nifltk~~~--VkLgDfGlaK~l~~~~~~a~tvvGTp~YmcPEil~------d~pYn~KSDiWs  191 (426)
T KOG0589|consen  121 YLHEN-RVLHRDLKCANIFLTKDKK--VKLGDFGLAKILNPEDSLASTVVGTPYYMCPEILS------DIPYNEKSDIWS  191 (426)
T ss_pred             HHHhh-hhhcccchhhhhhccccCc--eeecchhhhhhcCCchhhhheecCCCcccCHHHhC------CCCCCccCcchh
Confidence            99997 9999999999999999887  8999999999987654 444678999999999999      455999999999


Q ss_pred             H--HHHHHHH----------------------------------HHHHHHHhcCCCCCCCC
Q psy320          161 I--KMYTTFC----------------------------------EILEQCRLNHQDFRPDP  185 (202)
Q Consensus       161 l--~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~  185 (202)
                      +  .+|+|++                                  .++..++.-+|.-||++
T Consensus       192 LGC~~yEm~~lk~aF~a~~m~~Li~ki~~~~~~Plp~~ys~el~~lv~~~l~~~P~~RPsa  252 (426)
T KOG0589|consen  192 LGCCLYEMCTLKPAFKASNMSELILKINRGLYSPLPSMYSSELRSLVKSMLRKNPEHRPSA  252 (426)
T ss_pred             hcchHHHHHhcccccCccchHHHHHHHhhccCCCCCccccHHHHHHHHHHhhcCCccCCCH
Confidence            9  4677766                                  66777777777777765

>KOG0594|consensus

Probab=99.98  E-value=1.3e-31  Score=204.30  Aligned_cols=164  Identities=21%  Similarity=0.234  Sum_probs=134.4

Q ss_pred             hHHHHHHHHHHHHhcCCCcc-ceeeeeeeEEec--CCceEEEEEEccccccHHHHHHHcCC--CCCCHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDK-LMKLLDHFQVTG--INGTHVCTVTEIMAECLCNYMIRQKF--QPAPLVVAKIIVNQILE   78 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~-Iv~l~~~~~~~~--~~~~~~~lv~e~~~~sL~~~~~~~~~--~~~~~~~~~~~~~qi~~   78 (202)
                      ..+.+|+.+|+.+ +|+  | |+.+++++....  ......++|+||+..+|..++.....  .+++...++.+++|++.
T Consensus        55 ~taiREisllk~L-~~~--~~iv~L~dv~~~~~~~~~~~~l~lvfe~~d~DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~  131 (323)
T KOG0594|consen   55 STAIREISLLKRL-SHA--NHIVRLHDVIHTSNNHRGIGKLYLVFEFLDRDLKKYMDSLPKKPQGLPPRLIKSFMRQLLR  131 (323)
T ss_pred             chhhHHHHHHHHh-CCC--cceEEEEeeeeecccccccceEEEEEEeecccHHHHHHhccccccCCCHHHHHHHHHHHHH
Confidence            4568899999999 555  6 999999998422  11248999999999999999988763  36888999999999999


Q ss_pred             HHHHHHhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcc
Q psy320           79 GLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVD  157 (202)
Q Consensus        79 ~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~D  157 (202)
                      ||.|||+. +|+||||||+|||++.++.  +||+|||+|+.+.-+. ...+...|.+|.|||++.+.     ..|++.+|
T Consensus       132 gl~~~H~~-~IlHRDLKPQNlLi~~~G~--lKlaDFGlAra~~ip~~~yt~evvTlWYRaPEvLlGs-----~~Ys~~vD  203 (323)
T KOG0594|consen  132 GLAFLHSH-GILHRDLKPQNLLISSSGV--LKLADFGLARAFSIPMRTYTPEVVTLWYRAPEVLLGS-----TSYSTSVD  203 (323)
T ss_pred             HHHHHHhC-CeecccCCcceEEECCCCc--EeeeccchHHHhcCCcccccccEEEeeccCHHHhcCC-----CcCCCCcc
Confidence            99999996 9999999999999999877  9999999999876333 34467899999999998843     35889999


Q ss_pred             hhhHHHHHHHHHHHHHHHhcCCCCCCC
Q psy320          158 PTSIKMYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       158 iwsl~~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      |||+|+      ++..+..+.+-|+-+
T Consensus       204 iWs~Gc------IfaEm~~~~~LFpG~  224 (323)
T KOG0594|consen  204 IWSLGC------IFAEMFTRRPLFPGD  224 (323)
T ss_pred             hHhHHH------HHHHHHhCCCCCCCC
Confidence            999986      455555566666543

>KOG4721|consensus

Probab=99.98  E-value=3.1e-32  Score=218.34  Aligned_cols=162  Identities=20%  Similarity=0.291  Sum_probs=142.6

Q ss_pred             HHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q psy320            8 NLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTK   86 (202)
Q Consensus         8 ~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~   86 (202)
                      .+|+.|++| +||  ||+.+.|+|.    ....+|+||||| .|-|..+++..  +.+.......|..+|+.||+|||..
T Consensus       161 TdIKHLRkL-kH~--NII~FkGVCt----qsPcyCIiMEfCa~GqL~~VLka~--~~itp~llv~Wsk~IA~GM~YLH~h  231 (904)
T KOG4721|consen  161 TDIKHLRKL-KHP--NIITFKGVCT----QSPCYCIIMEFCAQGQLYEVLKAG--RPITPSLLVDWSKGIAGGMNYLHLH  231 (904)
T ss_pred             hhHHHHHhc-cCc--ceeeEeeeec----CCceeEEeeeccccccHHHHHhcc--CccCHHHHHHHHHHhhhhhHHHHHh
Confidence            457777777 455  9999999999    577999999999 99999999765  4588899999999999999999995


Q ss_pred             CCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH--HHH
Q psy320           87 HNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI--KMY  164 (202)
Q Consensus        87 ~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl--~~~  164 (202)
                       .|+|||||..|||+..++.  |||+|||.++......+...++||+.|||||++.      +.+.+.|+||||+  ++|
T Consensus       232 -KIIHRDLKSPNiLIs~~d~--VKIsDFGTS~e~~~~STkMSFaGTVaWMAPEvIr------nePcsEKVDIwSfGVVLW  302 (904)
T KOG4721|consen  232 -KIIHRDLKSPNILISYDDV--VKISDFGTSKELSDKSTKMSFAGTVAWMAPEVIR------NEPCSEKVDIWSFGVVLW  302 (904)
T ss_pred             -hHhhhccCCCceEeeccce--EEeccccchHhhhhhhhhhhhhhhHhhhCHHHhh------cCCcccccceehhHHHHH
Confidence             9999999999999999888  9999999999987777777899999999999999      4558899999999  467


Q ss_pred             HHHH-----------------------------------HHHHHHHhcCCCCCCCCCC
Q psy320          165 TTFC-----------------------------------EILEQCRLNHQDFRPDPRV  187 (202)
Q Consensus       165 ~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~  187 (202)
                      .|++                                   -++.+|+.-.+..||+.++
T Consensus       303 EmLT~EiPYkdVdssAIIwGVGsNsL~LpvPstcP~GfklL~Kqcw~sKpRNRPSFrq  360 (904)
T KOG4721|consen  303 EMLTGEIPYKDVDSSAIIWGVGSNSLHLPVPSTCPDGFKLLLKQCWNSKPRNRPSFRQ  360 (904)
T ss_pred             HHHhcCCCccccchheeEEeccCCcccccCcccCchHHHHHHHHHHhcCCCCCccHHH
Confidence            7777                                   7888899888888887754

>KOG0033|consensus

Probab=99.97  E-value=1.9e-31  Score=194.54  Aligned_cols=164  Identities=18%  Similarity=0.259  Sum_probs=133.4

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+++.+.| +||  ||+++++...    +....|+|+|.+ |++|..-+-....  +++..+.++.+|++.+|.|+|
T Consensus        57 l~rEarIC~~L-qHP--~IvrL~~ti~----~~~~~ylvFe~m~G~dl~~eIV~R~~--ySEa~aSH~~rQiLeal~yCH  127 (355)
T KOG0033|consen   57 LEREARICRKL-QHP--NIVRLHDSIQ----EESFHYLVFDLVTGGELFEDIVAREF--YSEADASHCIQQILEALAYCH  127 (355)
T ss_pred             HHHHHHHHHhc-CCC--cEeehhhhhc----ccceeEEEEecccchHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence            45788888888 455  9999999998    566999999999 8888765554432  899999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCc-ceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHV-YIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~-~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      .+ ||||||+||+|+++-+..+ .-+||+|||+|........-....|||.|++||++...+      |+.++|||++|+
T Consensus       128 ~n-~IvHRDvkP~nllLASK~~~A~vKL~~FGvAi~l~~g~~~~G~~GtP~fmaPEvvrkdp------y~kpvDiW~cGV  200 (355)
T KOG0033|consen  128 SN-GIVHRDLKPENLLLASKAKGAAVKLADFGLAIEVNDGEAWHGFAGTPGYLSPEVLKKDP------YSKPVDIWACGV  200 (355)
T ss_pred             hc-CceeccCChhheeeeeccCCCceeecccceEEEeCCccccccccCCCcccCHHHhhcCC------CCCcchhhhhhH
Confidence            97 9999999999999976433 239999999999887333333578999999999999555      899999999975


Q ss_pred             HHH--HH-----------HHHHHHHhcCCCCCCCC
Q psy320          164 YTT--FC-----------EILEQCRLNHQDFRPDP  185 (202)
Q Consensus       164 ~~~--~~-----------~~~~~~~~~~~~~~~~~  185 (202)
                      ...  +.           .+++++..|..++++..
T Consensus       201 iLfiLL~G~~PF~~~~~~rlye~I~~g~yd~~~~~  235 (355)
T KOG0033|consen  201 ILYILLVGYPPFWDEDQHRLYEQIKAGAYDYPSPE  235 (355)
T ss_pred             HHHHHHhCCCCCCCccHHHHHHHHhccccCCCCcc
Confidence            433  22           78888888887777643

>KOG0667|consensus

Probab=99.97  E-value=5.7e-32  Score=219.50  Aligned_cols=163  Identities=23%  Similarity=0.311  Sum_probs=139.4

Q ss_pred             hHHHHHHHHHHHHhcCC--C-ccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHP--S-DKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGL   80 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~--h-~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l   80 (202)
                      +.+..|+++|..+.+|.  + -|+|+++++|.    ...+.|+|+|.+..+|+++++.....+++...++.++.||+.||
T Consensus       227 ~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~----fr~HlciVfELL~~NLYellK~n~f~Glsl~~ir~~~~Qil~~L  302 (586)
T KOG0667|consen  227 RQAQIEIRILELLNKHDPDDKYNIVRMLDYFY----FRNHLCIVFELLSTNLYELLKNNKFRGLSLPLVRKFAQQILTAL  302 (586)
T ss_pred             HHHHHHHHHHHHHhccCCCCCeeEEEeeeccc----cccceeeeehhhhhhHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence            45667999999997554  2 48999999999    57799999999999999999999888899999999999999999


Q ss_pred             HHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           81 NHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        81 ~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      ..||+. ||+|+||||||||+...++..+|++|||+|......  ......+..|+|||++.+.+      |+.++||||
T Consensus       303 ~~L~~l-~IIHcDLKPENILL~~~~r~~vKVIDFGSSc~~~q~--vytYiQSRfYRAPEVILGlp------Y~~~IDmWS  373 (586)
T KOG0667|consen  303 LFLHEL-GIIHCDLKPENILLKDPKRSRIKVIDFGSSCFESQR--VYTYIQSRFYRAPEVILGLP------YDTAIDMWS  373 (586)
T ss_pred             HHHHhC-CeeeccCChhheeeccCCcCceeEEecccccccCCc--ceeeeeccccccchhhccCC------CCCccceee
Confidence            999995 999999999999999888778999999999887532  22556778999999999555      999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCC
Q psy320          161 IKMYTTFCEILEQCRLNHQDFRPDP  185 (202)
Q Consensus       161 l~~~~~~~~~~~~~~~~~~~~~~~~  185 (202)
                      ||+      ++..+..|.|-|+-+.
T Consensus       374 LGC------IlAEL~tG~PLfpG~n  392 (586)
T KOG0667|consen  374 LGC------ILAELFTGEPLFPGDN  392 (586)
T ss_pred             hhh------hHHhHhcCccccCCCC
Confidence            996      4445555888877554

>KOG0660|consensus

Probab=99.97  E-value=1.4e-31  Score=204.05  Aligned_cols=165  Identities=22%  Similarity=0.232  Sum_probs=137.8

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEE-ecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQV-TGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~-~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +...+|++.|+.++ |+  ||+.+.+.+.. ....-..+|+|+|+|+.+|.++++...  .++.+.+..+..|++.||+|
T Consensus        66 kRtlRElklLr~~~-He--NIi~l~di~~p~~~~~f~DvYiV~elMetDL~~iik~~~--~L~d~H~q~f~YQiLrgLKy  140 (359)
T KOG0660|consen   66 KRTLRELKLLRHLR-HE--NIIGLLDIFRPPSRDKFNDVYLVFELMETDLHQIIKSQQ--DLTDDHAQYFLYQILRGLKY  140 (359)
T ss_pred             HHHHHHHHHHHHhc-CC--CcceEEeecccccccccceeEEehhHHhhHHHHHHHcCc--cccHHHHHHHHHHHHHhcch
Confidence            45667888888884 55  99999999986 222457999999999999999998764  39999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccc---cCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQEC---HDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~---~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      +|+ ++|+||||||.|++++.+..  +|++|||+|+.....   +.-.....|.+|.|||++..     ...|++++|||
T Consensus       141 iHS-AnViHRDLKPsNll~n~~c~--lKI~DFGLAR~~~~~~~~~~mTeYVaTRWYRAPElll~-----~~~Yt~aiDiW  212 (359)
T KOG0660|consen  141 IHS-ANVIHRDLKPSNLLLNADCD--LKICDFGLARYLDKFFEDGFMTEYVATRWYRAPELLLN-----SSEYTKAIDIW  212 (359)
T ss_pred             hhc-ccccccccchhheeeccCCC--EEeccccceeeccccCcccchhcceeeeeecCHHHHhc-----cccccchhhhh
Confidence            999 79999999999999999877  999999999988543   11123468889999999962     45689999999


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCCCCCCC
Q psy320          160 SIKMYTTFCEILEQCRLNHQDFRPDPRV  187 (202)
Q Consensus       160 sl~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (202)
                      |+|+      ++..++.|.+-|+-....
T Consensus       213 SvGC------I~AEmL~gkplFpG~d~v  234 (359)
T KOG0660|consen  213 SVGC------ILAEMLTGKPLFPGKDYV  234 (359)
T ss_pred             hhhH------HHHHHHcCCCCCCCCchH
Confidence            9998      777888899999865543

>KOG0582|consensus

Probab=99.97  E-value=4.8e-31  Score=205.94  Aligned_cols=157  Identities=18%  Similarity=0.226  Sum_probs=131.9

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|++.++.+ +||  ||++++..|.    .+..+|+||.+| +||+.++++..-..++++..+..++++++.||.|||
T Consensus        71 l~kE~~~msl~-~HP--NIv~~~~sFv----v~~~LWvVmpfMa~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YLH  143 (516)
T KOG0582|consen   71 LRKEVQTMSLI-DHP--NIVTYHCSFV----VDSELWVVMPFMAGGSLLDIIKTYYPDGLEEASIATILREVLKALDYLH  143 (516)
T ss_pred             HHHHHHHhhhc-CCC--CcceEEEEEE----ecceeEEeehhhcCCcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHH
Confidence            35677777777 555  9999999999    477999999999 999999999888778999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC-----CCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ-----QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~-----~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      ++ |-+|||+|+.|||++.+|.  |||+|||.+......+..     ....+++.|+|||++....    ..|+.|+|||
T Consensus       144 ~~-G~IHRdvKAgnILi~~dG~--VkLadFgvsa~l~~~G~R~~~rf~tfvgtp~wmAPEvl~q~~----~GYdfKaDIw  216 (516)
T KOG0582|consen  144 QN-GHIHRDVKAGNILIDSDGT--VKLADFGVSASLFDSGDRQVTRFNTFVGTPCWMAPEVLMQQL----HGYDFKADIW  216 (516)
T ss_pred             hc-CceecccccccEEEcCCCc--EEEcCceeeeeecccCceeeEeeccccCcccccChHHhhhcc----cCccchhhhh
Confidence            96 9999999999999999998  999999998876655532     2358999999999975433    5688999999


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCC
Q psy320          160 SIKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       160 sl~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      |+|+-..      .+..|..||.
T Consensus       217 SfGITA~------ELA~G~aPf~  233 (516)
T KOG0582|consen  217 SFGITAC------ELAHGHAPFS  233 (516)
T ss_pred             hhhHHHH------HHhcCCCCcc
Confidence            9998433      4445666654

>KOG0663|consensus

Probab=99.97  E-value=2.5e-31  Score=201.10  Aligned_cols=160  Identities=20%  Similarity=0.208  Sum_probs=134.7

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .-..+||.+|.+++ ||  |||.+-++..  |++-+.+|+||||+..+|.+++.... .+|...+++-+..|++.|++||
T Consensus       120 ItsLREIniLl~~~-H~--NIV~vkEVVv--G~~~d~iy~VMe~~EhDLksl~d~m~-q~F~~~evK~L~~QlL~glk~l  193 (419)
T KOG0663|consen  120 ITSLREINILLKAR-HP--NIVEVKEVVV--GSNMDKIYIVMEYVEHDLKSLMETMK-QPFLPGEVKTLMLQLLRGLKHL  193 (419)
T ss_pred             chhHHHHHHHHhcC-CC--CeeeeEEEEe--ccccceeeeeHHHHHhhHHHHHHhcc-CCCchHHHHHHHHHHHHHHHHH
Confidence            44678999999995 55  9999999987  33556899999999999999998765 6799999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC-CCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ-SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~-~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |.. .|+||||||+|+|++..|-  +|++|||+|+.+..+..+. +..-|.+|+|||++.+     ...|+.++|+||+|
T Consensus       194 H~~-wilHRDLK~SNLLm~~~G~--lKiaDFGLAR~ygsp~k~~T~lVVTLWYRaPELLLG-----~~tyst~iDMWSvG  265 (419)
T KOG0663|consen  194 HDN-WILHRDLKTSNLLLSHKGI--LKIADFGLAREYGSPLKPYTPLVVTLWYRAPELLLG-----AKTYSTAVDMWSVG  265 (419)
T ss_pred             hhc-eeEecccchhheeeccCCc--EEecccchhhhhcCCcccCcceEEEeeecCHHHhcC-----CcccCcchhhhhHH
Confidence            996 9999999999999988776  9999999999987654443 5678999999999994     45589999999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +      ++..++.+.|-|+-
T Consensus       266 C------I~aE~l~~kPlf~G  280 (419)
T KOG0663|consen  266 C------IFAELLTQKPLFPG  280 (419)
T ss_pred             H------HHHHHHhcCCCCCC
Confidence            7      44455556666553

>KOG0604|consensus

Probab=99.97  E-value=2.4e-31  Score=198.74  Aligned_cols=157  Identities=22%  Similarity=0.245  Sum_probs=134.9

Q ss_pred             chHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Q psy320            3 TNYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLN   81 (202)
Q Consensus         3 ~~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~   81 (202)
                      +..+++|++.......||  |||+++++|+..-.....+-+|||.| ||.|++.+...+.+.|.+..+..+.+||..|+.
T Consensus        98 s~KARrEVeLHw~~s~h~--~iV~IidVyeNs~~~rkcLLiVmE~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~  175 (400)
T KOG0604|consen   98 SPKARREVELHWMASGHP--HIVSIIDVYENSYQGRKCLLIVMECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVR  175 (400)
T ss_pred             CHHHHhHhhhhhhhcCCC--ceEEeehhhhhhccCceeeEeeeecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHH
Confidence            345678998888886677  99999999986544567888999999 999999999988888999999999999999999


Q ss_pred             HHHhhCCccccCCCCCceeeecCC-cceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           82 HLHTKHNLVHTSIKPESIFFKADH-VYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        82 ~lh~~~~ivH~dl~p~nil~~~~~-~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      |||+. +|.||||||+|+|..... +..+||+|||.|+.....+.-...+-|+.|.|||++...      +|+..+|+||
T Consensus       176 ~lH~~-nIAHRDlKpENLLyt~t~~na~lKLtDfGFAK~t~~~~~L~TPc~TPyYvaPevlg~e------KydkscdmwS  248 (400)
T KOG0604|consen  176 YLHSM-NIAHRDLKPENLLYTTTSPNAPLKLTDFGFAKETQEPGDLMTPCFTPYYVAPEVLGPE------KYDKSCDMWS  248 (400)
T ss_pred             HHHhc-chhhccCChhheeeecCCCCcceEecccccccccCCCccccCCcccccccCHHHhCch------hcCCCCCccc
Confidence            99995 999999999999998754 334899999999998766666678999999999999844      4999999999


Q ss_pred             HH--HHHHHH
Q psy320          161 IK--MYTTFC  168 (202)
Q Consensus       161 l~--~~~~~~  168 (202)
                      +|  +|.++|
T Consensus       249 lgVimYIlLC  258 (400)
T KOG0604|consen  249 LGVIMYILLC  258 (400)
T ss_pred             hhHHHHHhhc
Confidence            95  555555

>KOG0597|consensus

Probab=99.97  E-value=2e-31  Score=213.52  Aligned_cols=153  Identities=20%  Similarity=0.302  Sum_probs=130.9

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      ..+|+++++.+ +||  ||+.++++|+    +..+.|+|+||+-|+|..++...+  .+|++.+..++.+++.||.|||+
T Consensus        48 l~~ev~i~r~l-kHp--niv~m~esfE----t~~~~~vVte~a~g~L~~il~~d~--~lpEe~v~~~a~~LVsaL~yLhs  118 (808)
T KOG0597|consen   48 LRQEVRILRSL-KHP--NIVEMLESFE----TSAHLWVVTEYAVGDLFTILEQDG--KLPEEQVRAIAYDLVSALYYLHS  118 (808)
T ss_pred             HHHHHHHHHhc-CCc--chhhHHHhhc----ccceEEEEehhhhhhHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHHh
Confidence            45789999999 565  9999999999    688999999999669999998774  59999999999999999999999


Q ss_pred             hCCccccCCCCCceeeecCCcceeEEeecccccccccccCC-CCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHH
Q psy320           86 KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ-QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~-~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~  164 (202)
                      . +|+|||+||.|||++.++.  +|+||||+|+.+...... ....|||.|+|||++..      .+|+..+|+||+|+.
T Consensus       119 ~-rilhrd~kPqniLl~~~~~--~KlcdFg~Ar~m~~~t~vltsikGtPlYmAPElv~e------~pyd~~sDlWslGci  189 (808)
T KOG0597|consen  119 N-RILHRDMKPQNILLEKGGT--LKLCDFGLARAMSTNTSVLTSIKGTPLYMAPELVEE------QPYDHTSDLWSLGCI  189 (808)
T ss_pred             c-CcccccCCcceeeecCCCc--eeechhhhhhhcccCceeeeeccCcccccCHHHHcC------CCccchhhHHHHHHH
Confidence            6 9999999999999999887  999999999987643222 24579999999999994      448889999999874


Q ss_pred             HHHHHHHHHHHhcCCCCC
Q psy320          165 TTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~  182 (202)
                      .+      .+..|.|||-
T Consensus       190 lY------E~~~G~PPF~  201 (808)
T KOG0597|consen  190 LY------ELYVGQPPFY  201 (808)
T ss_pred             HH------HHhcCCCCch
Confidence            33      5555777764

>KOG0605|consensus

Probab=99.97  E-value=1.2e-30  Score=207.51  Aligned_cols=154  Identities=18%  Similarity=0.212  Sum_probs=125.5

Q ss_pred             HHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhC
Q psy320            9 LIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKH   87 (202)
Q Consensus         9 e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~   87 (202)
                      |-.+|... +  +|.||+++-.|+    +..++||||||+ ||++..++.+.+.  ++++.++.++.+++.|+..+|+ .
T Consensus       191 ERdiL~~~-d--s~~vVKLyYsFQ----D~~~LYLiMEylPGGD~mTLL~~~~~--L~e~~arfYiaE~vlAI~~iH~-~  260 (550)
T KOG0605|consen  191 ERDILAEV-D--SPWVVKLYYSFQ----DKEYLYLIMEYLPGGDMMTLLMRKDT--LTEDWARFYIAETVLAIESIHQ-L  260 (550)
T ss_pred             HHHHhhhc-C--CCcEEEEEEEec----CCCeeEEEEEecCCccHHHHHHhcCc--CchHHHHHHHHHHHHHHHHHHH-c
Confidence            44444443 4  449999999999    788999999999 9999999988754  9999999999999999999999 5


Q ss_pred             CccccCCCCCceeeecCCcceeEEeecccccccccc---------------------c--C----CC-------------
Q psy320           88 NLVHTSIKPESIFFKADHVYIMTLINIQQATTHQEC---------------------H--D----QQ-------------  127 (202)
Q Consensus        88 ~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~---------------------~--~----~~-------------  127 (202)
                      |++||||||+|+|++..|.  +||+|||+|......                     .  .    ..             
T Consensus       261 gyIHRDIKPdNlLiD~~GH--iKLSDFGLs~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~  338 (550)
T KOG0605|consen  261 GYIHRDIKPDNLLIDAKGH--IKLSDFGLSTGLDKKHRIESYRLDEQMQINLSEAKPSDFPKFNTPRSTMSRREQLQTWK  338 (550)
T ss_pred             CcccccCChhheeecCCCC--EeeccccccchhhhhhhhhhhcchhhhhhhhccCCCccccccccccchhhHHHHHHHHH
Confidence            9999999999999999998  999999998643210                     0  0    00             


Q ss_pred             --------CCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCCCCC
Q psy320          128 --------SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLNHQDFRPDPR  186 (202)
Q Consensus       128 --------~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~~~~~  186 (202)
                              ...|||-|+|||++.+..      |+..+|+||||+      ++..|+.|-|||-.+..
T Consensus       339 ~nrr~~a~StVGTPDYiAPEVll~kg------Y~~~cDwWSLG~------ImyEmLvGyPPF~s~tp  393 (550)
T KOG0605|consen  339 RNRRQLAYSTVGTPDYIAPEVLLGKG------YGKECDWWSLGC------IMYEMLVGYPPFCSETP  393 (550)
T ss_pred             hhhhhhhhcccCCccccchHHHhcCC------CCccccHHHHHH------HHHHHHhCCCCCCCCCH
Confidence                    118999999999999544      899999999986      44466668888766543

>KOG0694|consensus

Probab=99.97  E-value=5e-31  Score=214.87  Aligned_cols=156  Identities=16%  Similarity=0.204  Sum_probs=130.8

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      .+.|.+++....+||  +++.++..|+    +..++|+||||+ ||++...++.   +.|++..++.++.+++.||.|||
T Consensus       415 ~~~EkrI~~la~~HP--FL~~L~~~fQ----T~~~l~fvmey~~Ggdm~~~~~~---~~F~e~rarfyaAev~l~L~fLH  485 (694)
T KOG0694|consen  415 LMCEKRIFELANRHP--FLVNLFSCFQ----TKEHLFFVMEYVAGGDLMHHIHT---DVFSEPRARFYAAEVVLGLQFLH  485 (694)
T ss_pred             HHHHHHHHHHhccCC--eEeecccccc----cCCeEEEEEEecCCCcEEEEEec---ccccHHHHHHHHHHHHHHHHHHH
Confidence            456777888776555  9999999999    788999999999 8884433322   45999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC-CCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ-SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~-~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      ++ ||++||||-+|||++.+|.  +||+|||+++.....+... ..|||+.|+|||++....      |+.++|+||+|+
T Consensus       486 ~~-~IIYRDlKLdNiLLD~eGh--~kiADFGlcKe~m~~g~~TsTfCGTpey~aPEil~e~~------Yt~aVDWW~lGV  556 (694)
T KOG0694|consen  486 EN-GIIYRDLKLDNLLLDTEGH--VKIADFGLCKEGMGQGDRTSTFCGTPEFLAPEVLTEQS------YTRAVDWWGLGV  556 (694)
T ss_pred             hc-CceeeecchhheEEcccCc--EEecccccccccCCCCCccccccCChhhcChhhhccCc------ccchhhHHHHHH
Confidence            96 9999999999999999998  9999999999876444433 679999999999999555      999999999987


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRPDP  185 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~  185 (202)
                      +      +..|+.|.+||+.+.
T Consensus       557 L------lyeML~Gq~PF~gdd  572 (694)
T KOG0694|consen  557 L------LYEMLVGESPFPGDD  572 (694)
T ss_pred             H------HHHHHcCCCCCCCCC
Confidence            3      336666887777443

>KOG0198|consensus

Probab=99.97  E-value=8.7e-31  Score=202.02  Aligned_cols=144  Identities=21%  Similarity=0.266  Sum_probs=119.3

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+++|.+++ ||  |||+++|......  ...+++.|||+ +|||.+++.+.+. ++++..++.+.+|++.||.|||
T Consensus        61 l~~Ei~iL~~l~-~p--~IV~~~G~~~~~~--~~~~~i~mEy~~~GsL~~~~~~~g~-~l~E~~v~~ytr~iL~GL~ylH  134 (313)
T KOG0198|consen   61 LEREIRILSRLN-HP--NIVQYYGSSSSRE--NDEYNIFMEYAPGGSLSDLIKRYGG-KLPEPLVRRYTRQILEGLAYLH  134 (313)
T ss_pred             HHHHHHHHHhCC-CC--CEEeeCCcccccc--CeeeEeeeeccCCCcHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHHH
Confidence            578999999995 55  9999999744211  14799999999 9999999999875 7999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeec-CCcceeEEeeccccccccc----ccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           85 TKHNLVHTSIKPESIFFKA-DHVYIMTLINIQQATTHQE----CHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~-~~~~~~~l~Dfg~a~~~~~----~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      ++ |++|+||||+|||++. ++.  +||+|||.++....    ........||+.|+|||++....     ...+++|||
T Consensus       135 s~-g~vH~DiK~~NiLl~~~~~~--~KlaDFG~a~~~~~~~~~~~~~~~~~Gtp~~maPEvi~~g~-----~~~~~sDiW  206 (313)
T KOG0198|consen  135 SK-GIVHCDIKPANILLDPSNGD--VKLADFGLAKKLESKGTKSDSELSVQGTPNYMAPEVIRNGE-----VARRESDIW  206 (313)
T ss_pred             hC-CEeccCcccceEEEeCCCCe--EEeccCccccccccccccccccccccCCccccCchhhcCCC-----cCCccchhh
Confidence            96 9999999999999998 466  99999999988763    11222568999999999999421     112489999


Q ss_pred             hHHH
Q psy320          160 SIKM  163 (202)
Q Consensus       160 sl~~  163 (202)
                      |+|+
T Consensus       207 SlGC  210 (313)
T KOG0198|consen  207 SLGC  210 (313)
T ss_pred             hcCC
Confidence            9974

>KOG0610|consensus

Probab=99.97  E-value=4.8e-30  Score=198.71  Aligned_cols=156  Identities=19%  Similarity=0.210  Sum_probs=127.9

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      +..|-++|+.+ +||  +++.+|..|+    +....|++|||| ||+|..+++++..+.|++..++.++.+++.||+|||
T Consensus       124 a~tE~eIL~~l-DHP--FlPTLYa~fe----t~~~~cl~meyCpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYLH  196 (459)
T KOG0610|consen  124 AQTEREILSLL-DHP--FLPTLYASFE----TDKYSCLVMEYCPGGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYLH  196 (459)
T ss_pred             HHHHHHHHHhc-CCC--ccchhhheee----ccceeEEEEecCCCccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHH
Confidence            44567777777 666  9999999999    688999999999 999999999999999999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeeccccccccc--------------------------------cc-C------
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQE--------------------------------CH-D------  125 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~--------------------------------~~-~------  125 (202)
                      - +|||.|||||+|||+..+|.  ++|+||.++.....                                .. .      
T Consensus       197 m-lGivYRDLKPENILvredGH--IMLsDFDLS~~~~~~Pt~~~s~~~~~~~~~~~~~~~~~s~f~~r~~~~~~~~~k~~  273 (459)
T KOG0610|consen  197 M-LGIVYRDLKPENILVREDGH--IMLSDFDLSLRCPVSPTLVKSSSPRSSGSQPSCRSRQPSCFSPRCLSSSKKRKKKD  273 (459)
T ss_pred             h-hceeeccCCcceeEEecCCc--EEeeeccccccCCCCCeeeccCCCCCCCCCcccccccccccccchhcccccccccc
Confidence            9 59999999999999999998  99999988653210                                00 0      


Q ss_pred             -------------C-----CCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCC
Q psy320          126 -------------Q-----QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       126 -------------~-----~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                                   +     ....||-.|+|||++.+..      .+.++|+|++|++.+      .++.|.-||+-
T Consensus       274 ~~~~~~~p~~~aep~~~RSnSFVGThEYlAPEvI~G~G------HgsAVDWWtfGIflY------EmLyG~TPFKG  337 (459)
T KOG0610|consen  274 ESASRSLPELVAEPTGARSNSFVGTHEYLAPEVIRGEG------HGSAVDWWTFGIFLY------EMLYGTTPFKG  337 (459)
T ss_pred             ccccccchhhhcCCCCccccccccccccccceeeecCC------CCchhhHHHHHHHHH------HHHhCCCCcCC
Confidence                         0     0237888999999999655      677999999987543      44445555553

>KOG1989|consensus

Probab=99.97  E-value=6.9e-30  Score=213.06  Aligned_cols=155  Identities=15%  Similarity=0.160  Sum_probs=128.2

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEE--ecCC-ceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQV--TGIN-GTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEG   79 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~--~~~~-~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~   79 (202)
                      +.-++||.++++|+.|+  |||.++|....  .+.. .-.+.|.|||| +++|-+++..+...+|.+.+++.|+.+++.|
T Consensus        79 ~~v~~EI~~MK~L~gh~--nIV~yidss~~~~~~~~~~~EvllLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~A  156 (738)
T KOG1989|consen   79 NAVKREIDIMKLLSGHK--NIVSYIDSSAINRSSNNGVWEVLLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEA  156 (738)
T ss_pred             HHHHHHHHHHHHhcCCC--ceeeEeccccccccCCCceeEEEeehhhccCCcHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence            34568999999998888  99999995332  2223 36888999999 7999999997776779999999999999999


Q ss_pred             HHHHHhhCC--ccccCCCCCceeeecCCcceeEEeecccccccccccCCC----------CCCCCccchhhHHHHhhhhc
Q psy320           80 LNHLHTKHN--LVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ----------SSSKTKSKIFCEILEQCRLN  147 (202)
Q Consensus        80 l~~lh~~~~--ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~----------~~~~~~~~~ape~~~~~~~~  147 (202)
                      +.+||. +.  |+|||||-||+|+..++.  .||||||.|..........          ...-|+.|++||.+..-   
T Consensus       157 Va~mH~-~~pPiIHRDLKiENvLls~~g~--~KLCDFGSatt~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDly---  230 (738)
T KOG1989|consen  157 VAAMHY-LKPPIIHRDLKIENVLLSADGN--YKLCDFGSATTKILSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLY---  230 (738)
T ss_pred             HHHHhc-CCCccchhhhhhhheEEcCCCC--EEeCcccccccccCCCccHHHHHHHHHHHHhhCCccccChHHHhhh---
Confidence            999999 57  999999999999999987  9999999998654322111          23688899999999843   


Q ss_pred             cCCCCCCCcchhhHHHHHH
Q psy320          148 QDFRLDPRVDPTSIKMYTT  166 (202)
Q Consensus       148 ~~~~~~~~~Diwsl~~~~~  166 (202)
                      .+.+.+.|+|||+||++.+
T Consensus       231 sg~pI~eKsDIWALGclLY  249 (738)
T KOG1989|consen  231 SGLPIGEKSDIWALGCLLY  249 (738)
T ss_pred             cCCCCcchhHHHHHHHHHH
Confidence            4778899999999987655

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.97  E-value=2.1e-29  Score=201.57  Aligned_cols=154  Identities=14%  Similarity=0.220  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+.++.++ +|+  ||+++++.|.    +....|+||||+ +++|.+++.+.  +++++..++.++.|++.||.|||
T Consensus        48 ~~~E~~il~~~-~~~--~iv~~~~~~~----~~~~~~lv~E~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~lH  118 (363)
T cd05628          48 IRAERDILVEA-DSL--WVVKMFYSFQ----DKLNLYLIMEFLPGGDMMTLLMKK--DTLTEEETQFYIAETVLAIDSIH  118 (363)
T ss_pred             HHHHHHHHHhC-CCC--CcceEEEEEe----cCCeEEEEEcCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH
Confidence            34577777777 454  9999999998    567999999999 99999999775  45999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccC------------------------------------CCC
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD------------------------------------QQS  128 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~------------------------------------~~~  128 (202)
                      ++ ||+||||||+|||++.++.  ++|+|||+++.......                                    ...
T Consensus       119 ~~-givHrDlKp~NILi~~~~~--vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (363)
T cd05628         119 QL-GFIHRDIKPDNLLLDSKGH--VKLSDFGLCTGLKKAHRTEFYRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFS  195 (363)
T ss_pred             hC-CeEecCCCHHHeEECCCCC--EEEeeccCcccccccccccccccccccccccccccccccccccchhhhcccccccc
Confidence            96 9999999999999998876  99999999875432100                                    012


Q ss_pred             CCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCC
Q psy320          129 SSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       129 ~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      ..||+.|+|||.+..      ..++.++|+||+|+..+      .+..|.++|..
T Consensus       196 ~~Gt~~Y~aPE~~~~------~~~~~~~DvwSlGvil~------ell~G~~Pf~~  238 (363)
T cd05628         196 TVGTPDYIAPEVFMQ------TGYNKLCDWWSLGVIMY------EMLIGYPPFCS  238 (363)
T ss_pred             ccCCccccCHHHHcC------CCCCCchhhhhhHHHHH------HHHhCCCCCCC
Confidence            468999999999973      34788999999986322      44457766653

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>KOG0986|consensus

Probab=99.96  E-value=6.7e-30  Score=200.06  Aligned_cols=161  Identities=20%  Similarity=0.220  Sum_probs=140.4

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      +.+|-++|+++ +.+  +||.+--+|+    +.+.+|+|+..| ||+|.-.+...+.++|+++.+..++.+|+.||++||
T Consensus       232 aLnEk~iL~kV-~s~--FiVslaYAfe----Tkd~LClVLtlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH  304 (591)
T KOG0986|consen  232 ALNEKQILEKV-SSP--FIVSLAYAFE----TKDALCLVLTLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLH  304 (591)
T ss_pred             hhHHHHHHHHh-ccC--cEEEEeeeec----CCCceEEEEEeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHH
Confidence            45788889999 455  9999999999    788999999999 999999998888778999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~  164 (202)
                      .+ +||.||+||+|||++..|+  ++|+|+|+|..+..........||..|||||++.      +..|+..+|+||+|+.
T Consensus       305 ~~-~iVYRDLKPeNILLDd~Gh--vRISDLGLAvei~~g~~~~~rvGT~GYMAPEvl~------ne~Y~~s~Dwf~lGCl  375 (591)
T KOG0986|consen  305 RR-RIVYRDLKPENILLDDHGH--VRISDLGLAVEIPEGKPIRGRVGTVGYMAPEVLQ------NEVYDFSPDWFSLGCL  375 (591)
T ss_pred             hc-ceeeccCChhheeeccCCC--eEeeccceEEecCCCCccccccCcccccCHHHHc------CCcccCCccHHHHHhH
Confidence            97 9999999999999999988  9999999999886544444558999999999999      3448999999999973


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCC
Q psy320          165 TTFCEILEQCRLNHQDFRPDPRVD  188 (202)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~  188 (202)
                      .      ..++.|+.|||-...+.
T Consensus       376 l------Yemi~G~sPFr~~KeKv  393 (591)
T KOG0986|consen  376 L------YEMIAGHSPFRQRKEKV  393 (591)
T ss_pred             H------HHHHcccCchhhhhhhh
Confidence            3      36777999998655543

>KOG4717|consensus

Probab=99.96  E-value=1.6e-29  Score=201.09  Aligned_cols=161  Identities=19%  Similarity=0.233  Sum_probs=135.6

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|++.++.++   |||||++|++..    .+..+|||+|.- +|+|++++.+.. .++.+..++.++.||+.|+.|+
T Consensus        63 hlfqEVRCMKLVQ---HpNiVRLYEViD----TQTKlyLiLELGD~GDl~DyImKHe-~Gl~E~La~kYF~QI~~AI~YC  134 (864)
T KOG4717|consen   63 HLFQEVRCMKLVQ---HPNIVRLYEVID----TQTKLYLILELGDGGDLFDYIMKHE-EGLNEDLAKKYFAQIVHAISYC  134 (864)
T ss_pred             HHHHHHHHHHHhc---CcCeeeeeehhc----ccceEEEEEEecCCchHHHHHHhhh-ccccHHHHHHHHHHHHHHHHHH
Confidence            4567899998885   559999999998    677999999988 889999999987 4599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCC-CCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLD-PRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~-~~~Diwsl~  162 (202)
                      |+ +-+|||||||+|+++-... +.+||+|||.+..+.+.......||...|.|||++.+..      |+ +++||||||
T Consensus       135 Hq-LHVVHRDLKPENVVFFEKl-GlVKLTDFGFSNkf~PG~kL~TsCGSLAYSAPEILLGDs------YDAPAVDiWSLG  206 (864)
T KOG4717|consen  135 HQ-LHVVHRDLKPENVVFFEKL-GLVKLTDFGFSNKFQPGKKLTTSCGSLAYSAPEILLGDS------YDAPAVDIWSLG  206 (864)
T ss_pred             hh-hhhhcccCCcceeEEeeec-CceEeeeccccccCCCcchhhcccchhhccCchhhhcCc------cCCcchhhhHHH
Confidence            99 5999999999998776432 359999999999998666666789999999999999766      65 499999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFRPDPRV  187 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~  187 (202)
                      +.      +..+.-|++||.-..+.
T Consensus       207 VI------LyMLVCGq~PFqeANDS  225 (864)
T KOG4717|consen  207 VI------LYMLVCGQPPFQEANDS  225 (864)
T ss_pred             HH------HHHHHhCCCccccccch
Confidence            63      33555678887655444

>KOG0032|consensus

Probab=99.96  E-value=3.4e-29  Score=199.58  Aligned_cols=164  Identities=23%  Similarity=0.294  Sum_probs=136.3

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ....+|+++|++++.||  ||+.++++|+    +....++|||++ ||.|.+.+...   .+++..+..++.|++.++.|
T Consensus        80 ~~v~~Ev~il~~l~~hp--niv~l~~~~e----~~~~~~lvmEL~~GGeLfd~i~~~---~~sE~da~~~~~~il~av~~  150 (382)
T KOG0032|consen   80 EDVRREVAILQQLSGHP--NIVQLKDAFE----DPDSVYLVMELCEGGELFDRIVKK---HYSERDAAGIIRQILEAVKY  150 (382)
T ss_pred             HHHHHHHHHHHhccCCC--CEEEEEEEEE----cCCeEEEEEEecCCchHHHHHHHc---cCCHHHHHHHHHHHHHHHHH
Confidence            45678999999996677  9999999999    677999999999 99999999876   29999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCc--ceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHV--YIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~--~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      ||+. |++|||+||+|+|+.....  ..++++|||+|............+||+.|+|||++..      .+|+..+|+||
T Consensus       151 lH~~-gvvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~~~~~~~~~~~Gtp~y~APEvl~~------~~y~~~~DiWS  223 (382)
T KOG0032|consen  151 LHSL-GVVHRDLKPENLLLASKDEGSGRIKLIDFGLAKFIKPGERLHTIVGTPEYVAPEVLGG------RPYGDEVDVWS  223 (382)
T ss_pred             HHhC-CceeccCCHHHeeeccccCCCCcEEEeeCCCceEccCCceEeeecCCccccCchhhcC------CCCCcccchhH
Confidence            9994 9999999999999987642  3699999999999876333345799999999999994      44899999999


Q ss_pred             HHH--HHHHH-----------HHHHHHHhcCCCCCC
Q psy320          161 IKM--YTTFC-----------EILEQCRLNHQDFRP  183 (202)
Q Consensus       161 l~~--~~~~~-----------~~~~~~~~~~~~~~~  183 (202)
                      +|+  |.++|           +.+..+..|+..|..
T Consensus       224 ~Gvi~yiLL~G~~PF~~~~~~~~~~~i~~~~~~f~~  259 (382)
T KOG0032|consen  224 IGVILYILLSGVPPFWGETEFEIFLAILRGDFDFTS  259 (382)
T ss_pred             HHHHHHHHhhCCCCCcCCChhHHHHHHHcCCCCCCC
Confidence            965  44444           455555555555543

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.96  E-value=5.3e-29  Score=193.22  Aligned_cols=164  Identities=21%  Similarity=0.193  Sum_probs=130.0

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEec-CCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTG-INGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~-~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+.+++.+++..||||+++++++.... ......++||||++++|.+++.......+++..++.++.|++.||.||
T Consensus        47 ~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~l  126 (290)
T cd07862          47 STIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFL  126 (290)
T ss_pred             HHHHHHHHHHhhcccCCCCcceEEEEEecccCCCCCcEEEEEccCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            3456888888886545679999999986432 134579999999988999999876656699999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |++ |++||||||+|||++.++.  ++|+|||.+.............+++.|+|||.+..      ..++.++|+||+|+
T Consensus       127 H~~-~iiH~dlkp~Nil~~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~DiwslG~  197 (290)
T cd07862         127 HSH-RVVHRDLKPQNILVTSSGQ--IKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQ------SSYATPVDLWSVGC  197 (290)
T ss_pred             HHC-CeeeCCCCHHHEEEcCCCC--EEEccccceEeccCCcccccccccccccChHHHhC------CCCCCccchHHHHH
Confidence            996 9999999999999998876  99999999987643333334568899999999873      33778999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~  183 (202)
                      ..      ..+..|.++|..
T Consensus       198 il------~el~~g~~~f~~  211 (290)
T cd07862         198 IF------AEMFRRKPLFRG  211 (290)
T ss_pred             HH------HHHHcCCCCcCC
Confidence            32      233446666653

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>KOG0580|consensus

Probab=99.96  E-value=7.1e-31  Score=190.49  Aligned_cols=145  Identities=15%  Similarity=0.210  Sum_probs=125.4

Q ss_pred             CccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCce
Q psy320           21 SDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESI   99 (202)
Q Consensus        21 h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~ni   99 (202)
                      ||||++++++|.    +....|+++||. +|++...+.....+++++..+..+..|++.|+.|+|.+ +|+||||||+|+
T Consensus        81 hpnilrlY~~fh----d~~riyLilEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h~k-~VIhRdiKpenl  155 (281)
T KOG0580|consen   81 HPNILRLYGYFH----DSKRIYLILEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANALLYCHLK-RVIHRDIKPENL  155 (281)
T ss_pred             CccHHhhhhhee----ccceeEEEEEecCCchHHHHHHhcccccccccchhHHHHHHHHHHHHhccC-CcccCCCCHHHh
Confidence            669999999999    678999999999 99999999866667799999999999999999999996 999999999999


Q ss_pred             eeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHhcCC
Q psy320          100 FFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLNHQ  179 (202)
Q Consensus       100 l~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~~~~  179 (202)
                      |++.++.  +|++|||.+.... .......|||.-|.+||...      +..++..+|+|++|+...      ..+.|.+
T Consensus       156 Llg~~~~--lkiAdfGwsV~~p-~~kR~tlcgt~dyl~pEmv~------~~~hd~~Vd~w~lgvl~y------eflvg~p  220 (281)
T KOG0580|consen  156 LLGSAGE--LKIADFGWSVHAP-SNKRKTLCGTLDYLPPEMVE------GRGHDKFVDLWSLGVLCY------EFLVGLP  220 (281)
T ss_pred             ccCCCCC--eeccCCCceeecC-CCCceeeecccccCCHhhcC------CCCccchhhHHHHHHHHH------HHHhcCC
Confidence            9999988  9999999998865 34444689999999999999      444888999999987433      4445777


Q ss_pred             CCCCCC
Q psy320          180 DFRPDP  185 (202)
Q Consensus       180 ~~~~~~  185 (202)
                      +|.+..
T Consensus       221 pFes~~  226 (281)
T KOG0580|consen  221 PFESQS  226 (281)
T ss_pred             chhhhh
Confidence            776544

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.96  E-value=4.7e-29  Score=200.04  Aligned_cols=157  Identities=19%  Similarity=0.227  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+.+++.+ +||  ||++++++|.    ++...|+||||+ +++|.+++...   .+++..+..++.|++.||.|||
T Consensus        90 ~~~e~~i~~~~-~hp--~iv~~~~~~~----~~~~~~lv~Ey~~gg~L~~~l~~~---~~~~~~~~~~~~qil~aL~~LH  159 (370)
T cd05621          90 FWEERDIMAFA-NSP--WVVQLFCAFQ----DDKYLYMVMEYMPGGDLVNLMSNY---DVPEKWAKFYTAEVVLALDAIH  159 (370)
T ss_pred             HHHHHHHHHhC-CCC--CEeeEEEEEE----cCCEEEEEEcCCCCCcHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHH
Confidence            44677777766 455  9999999998    577999999999 99999998654   3899999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccC--CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD--QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~--~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      ++ ||+||||||+|||++.++.  +||+|||.|........  .....+|+.|+|||++....  ....++.++|+||+|
T Consensus       160 ~~-~IvHrDLKp~NILl~~~~~--~kL~DFG~a~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~--~~~~~~~~~DiwSlG  234 (370)
T cd05621         160 SM-GLIHRDVKPDNMLLDKHGH--LKLADFGTCMKMDETGMVRCDTAVGTPDYISPEVLKSQG--GDGYYGRECDWWSVG  234 (370)
T ss_pred             HC-CeEecCCCHHHEEECCCCC--EEEEecccceecccCCceecccCCCCcccCCHHHHhccC--CCCCCCcccCEEeeh
Confidence            96 9999999999999998877  99999999987643222  12457899999999997432  122356799999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +.      +..+..|.++|..
T Consensus       235 ~i------lyell~G~~Pf~~  249 (370)
T cd05621         235 VF------LFEMLVGDTPFYA  249 (370)
T ss_pred             HH------HHHHHhCCCCCCC
Confidence            63      2244557777654

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.96  E-value=4.6e-29  Score=198.03  Aligned_cols=152  Identities=19%  Similarity=0.227  Sum_probs=124.8

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+++++.+ +||  ||++++++|.    .+...|+||||+ +++|.+++.+.  +.+++..+..++.|++.||.|||
T Consensus        78 ~~~E~~~l~~l-~hp--~Iv~~~~~~~----~~~~~~lv~Ey~~~g~L~~~i~~~--~~~~~~~~~~~~~qi~~aL~~LH  148 (340)
T PTZ00426         78 VFSERKILNYI-NHP--FCVNLYGSFK----DESYLYLVLEFVIGGEFFTFLRRN--KRFPNDVGCFYAAQIVLIFEYLQ  148 (340)
T ss_pred             HHHHHHHHHhC-CCC--CCcceEEEEE----eCCEEEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH
Confidence            34678888877 455  9999999998    566999999999 99999999776  35999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~  164 (202)
                      +. |++||||||+|||++.++.  ++|+|||.+.....  ......+++.|+|||++...      .++.++|+||+|+.
T Consensus       149 ~~-~ivHrDLkp~NILl~~~~~--ikL~DFG~a~~~~~--~~~~~~gt~~y~aPE~~~~~------~~~~~~DiwSlGvi  217 (340)
T PTZ00426        149 SL-NIVYRDLKPENLLLDKDGF--IKMTDFGFAKVVDT--RTYTLCGTPEYIAPEILLNV------GHGKAADWWTLGIF  217 (340)
T ss_pred             HC-CeEccCCCHHHEEECCCCC--EEEecCCCCeecCC--CcceecCChhhcCHHHHhCC------CCCccccccchhhH
Confidence            96 9999999999999988776  99999999986532  22345789999999999743      36789999999863


Q ss_pred             HHHHHHHHHHHhcCCCCCC
Q psy320          165 TTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~  183 (202)
                            +..+..|.++|..
T Consensus       218 ------l~ell~G~~Pf~~  230 (340)
T PTZ00426        218 ------IYEILVGCPPFYA  230 (340)
T ss_pred             ------HHHHhcCCCCCCC
Confidence                  2345557776653

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.96  E-value=3.8e-29  Score=197.20  Aligned_cols=153  Identities=18%  Similarity=0.154  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            7 TNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         7 ~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      .+|+++++.+ +|  |||++++++|.    .+...|+||||+ +++|.+.+...  +.+++..+..++.|++.||.|||+
T Consensus        43 ~~e~~~l~~l-~h--p~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~L~~lH~  113 (323)
T cd05571          43 LTESRVLQNT-RH--PFLTALKYSFQ----THDRLCFVMEYANGGELFFHLSRE--RVFSEDRARFYGAEIVSALGYLHS  113 (323)
T ss_pred             HHHHHHHHhC-CC--CCCCCEEEEEE----cCCEEEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHh
Confidence            4567777776 44  59999999998    567999999999 99999988765  459999999999999999999999


Q ss_pred             hCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHH
Q psy320           86 KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~  164 (202)
                      . ||+||||||+||+++.++.  ++|+|||+++...... ......+++.|+|||.+..      ..++.++|+||+|+.
T Consensus       114 ~-~ivHrDlkp~NIll~~~~~--~kl~DfG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~DiwSlG~i  184 (323)
T cd05571         114 C-DVVYRDLKLENLMLDKDGH--IKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLED------NDYGRAVDWWGLGVV  184 (323)
T ss_pred             C-CeEeCCCCHHHEEECCCCC--EEEeeCCCCcccccCCCcccceecCccccChhhhcC------CCCCccccCcccchh
Confidence            5 9999999999999998876  9999999987643222 2224578999999999873      347889999999863


Q ss_pred             HHHHHHHHHHHhcCCCCCC
Q psy320          165 TTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~  183 (202)
                      .      ..+..|..+|..
T Consensus       185 l------~elltg~~Pf~~  197 (323)
T cd05571         185 M------YEMMCGRLPFYN  197 (323)
T ss_pred             h------hhhhcCCCCCCC
Confidence            2      244446666643

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.96  E-value=1.2e-28  Score=191.01  Aligned_cols=156  Identities=16%  Similarity=0.148  Sum_probs=127.1

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      +.+|++++..+ +|+  +|+.+.++|.    .....|+||||+ +++|.+.+.......+++..+..++.|++.||.|||
T Consensus        47 ~~~E~~il~~l-~~~--~iv~~~~~~~----~~~~~~lv~e~~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH  119 (285)
T cd05631          47 ALNEKRILEKV-NSR--FVVSLAYAYE----TKDALCLVLTIMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQ  119 (285)
T ss_pred             HHHHHHHHHhc-CCC--cEEEEEEEEc----cCCeEEEEEEecCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            45678888877 455  9999999998    566899999999 899998886654456999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~  164 (202)
                      +. |++||||||+|||++.++.  ++|+|||.+.............++..|+|||.+..      ..++.++|+||+|+.
T Consensus       120 ~~-~iiH~dikp~Nill~~~~~--~kl~Dfg~~~~~~~~~~~~~~~g~~~y~aPE~~~~------~~~~~~~DvwslGvi  190 (285)
T cd05631         120 RE-RIVYRDLKPENILLDDRGH--IRISDLGLAVQIPEGETVRGRVGTVGYMAPEVINN------EKYTFSPDWWGLGCL  190 (285)
T ss_pred             hC-CEEeCCCCHHHEEECCCCC--EEEeeCCCcEEcCCCCeecCCCCCCCccCHhhhcC------CCCCcccCchhHHHH
Confidence            96 9999999999999988776  99999999987543333334578999999999973      347889999999863


Q ss_pred             HHHHHHHHHHHhcCCCCCC
Q psy320          165 TTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~  183 (202)
                      .+      .+..|..+|..
T Consensus       191 l~------el~~g~~pf~~  203 (285)
T cd05631         191 IY------EMIQGQSPFRK  203 (285)
T ss_pred             HH------HHHhCCCCCCC
Confidence            22      44558777754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=4.1e-29  Score=200.90  Aligned_cols=153  Identities=20%  Similarity=0.262  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+++++.+ +||  ||++++++|.    +..+.|+||||+ +++|.+++...  +.+++..++.++.|++.||.|||
T Consensus        48 ~~~E~~il~~l-~hp--~iv~~~~~~~----~~~~~~lv~E~~~gg~L~~~l~~~--~~~~~~~~~~~~~ql~~aL~~LH  118 (377)
T cd05629          48 VKAERDVLAES-DSP--WVVSLYYSFQ----DAQYLYLIMEFLPGGDLMTMLIKY--DTFSEDVTRFYMAECVLAIEAVH  118 (377)
T ss_pred             HHHHHHHHHhC-CCC--CcceEEEEEE----cCCeeEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH
Confidence            34577777776 455  9999999998    577999999999 99999998765  45999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccC---------------------------------------
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD---------------------------------------  125 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~---------------------------------------  125 (202)
                      +. |++||||||+|||++.++.  ++|+|||+++.+.....                                       
T Consensus       119 ~~-givHrDlkp~NIll~~~~~--~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (377)
T cd05629         119 KL-GFIHRDIKPDNILIDRGGH--IKLSDFGLSTGFHKQHDSAYYQKLLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIA  195 (377)
T ss_pred             hC-CeeccCCCHHHEEECCCCC--EEEeecccccccccccccccccccccccccccccccccccccccccccccchhhhh
Confidence            95 9999999999999988776  99999999864321000                                       


Q ss_pred             ---------CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCCCC
Q psy320          126 ---------QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       126 ---------~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~  182 (202)
                               .....||+.|+|||++..      ..++.++|+||+|+.      +..+..|.++|.
T Consensus       196 ~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~DiwSlGvi------l~elltG~~Pf~  249 (377)
T cd05629         196 TWKKNRRLMAYSTVGTPDYIAPEIFLQ------QGYGQECDWWSLGAI------MFECLIGWPPFC  249 (377)
T ss_pred             hhhhcccccccccCCCccccCHHHHcc------CCCCCceeeEecchh------hhhhhcCCCCCC
Confidence                     002358899999999873      347889999999863      224445777764

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.96  E-value=6e-29  Score=200.22  Aligned_cols=154  Identities=19%  Similarity=0.231  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+++++++ +||  ||+++++.|.    ++...|+||||+ +++|.+++.+.  +.+++..++.++.|++.||.|||
T Consensus        48 ~~~E~~il~~~-~h~--~iv~~~~~~~----~~~~~~lv~E~~~gg~L~~~l~~~--~~~~e~~~~~~~~qi~~al~~lH  118 (382)
T cd05625          48 VKAERDILAEA-DNE--WVVRLYYSFQ----DKDNLYFVMDYIPGGDMMSLLIRM--GIFPEDLARFYIAELTCAVESVH  118 (382)
T ss_pred             HHHHHHHHHhC-CCC--cCCeEEEEEE----eCCEEEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH
Confidence            45677777777 455  9999999998    567999999999 89999998765  35899999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeeccccccccccc----------------------------------------
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH----------------------------------------  124 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~----------------------------------------  124 (202)
                      +. ||+||||||+|||++.++.  ++|+|||++..+....                                        
T Consensus       119 ~~-~ivHrDlKp~NILl~~~g~--~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (382)
T cd05625         119 KM-GFIHRDIKPDNILIDRDGH--IKLTDFGLCTGFRWTHDSKYYQSGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERR  195 (382)
T ss_pred             hC-CeecCCCCHHHEEECCCCC--EEEeECCCCccccccccccccccccccccccccccccccccccccccccccchhhh
Confidence            95 9999999999999998877  9999999975321000                                        


Q ss_pred             --------CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCC
Q psy320          125 --------DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       125 --------~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                              ......||+.|+|||++..      ..++.++|+||+|+.      +..+..|.++|..
T Consensus       196 ~~~~~~~~~~~~~~gt~~Y~aPE~~~~------~~~~~~~DiwSlGvi------l~elltG~~Pf~~  250 (382)
T cd05625         196 AARQHQRCLAHSLVGTPNYIAPEVLLR------TGYTQLCDWWSVGVI------LYEMLVGQPPFLA  250 (382)
T ss_pred             hccccccccccccccCcccCCHHHhcC------CCCCCeeeEEechHH------HHHHHhCCCCCCC
Confidence                    0012368899999999973      347889999999863      2345558777754

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=7.4e-29  Score=198.42  Aligned_cols=154  Identities=16%  Similarity=0.241  Sum_probs=124.5

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+++++.+ +||  ||++++++|.    .+.+.|+||||+ +++|.+++...  +.+++..++.++.|++.||.|||
T Consensus        48 ~~~E~~il~~l-~h~--~iv~~~~~~~----~~~~~~lv~E~~~~g~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~lH  118 (364)
T cd05599          48 VRAERDILAEA-DNP--WVVKLYYSFQ----DENYLYLIMEYLPGGDMMTLLMKK--DTFTEEETRFYIAETILAIDSIH  118 (364)
T ss_pred             HHHHHHHHHhC-CCC--CCcceEEEEE----cCCeEEEEECCCCCcHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH
Confidence            45688888888 455  9999999999    577999999999 99999998765  35999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccC---------------------------------------
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD---------------------------------------  125 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~---------------------------------------  125 (202)
                      +. |++||||||+|||++.++.  ++|+|||++........                                       
T Consensus       119 ~~-~ivH~Dlkp~NIl~~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (364)
T cd05599         119 KL-GYIHRDIKPDNLLLDAKGH--IKLSDFGLCTGLKKSHRTEFYRILSHALPSNFLDFISKPMSSKRKAETWKRNRRAL  195 (364)
T ss_pred             HC-CeEeccCCHHHeEECCCCC--EEEeecccceeccccccccccccccccccccccccccccccccccccchhhccccc
Confidence            96 9999999999999998877  99999999875432110                                       


Q ss_pred             CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCC
Q psy320          126 QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       126 ~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      .....||+.|+|||++..      ..++.++|+||+|+.      +..+..|.++|..
T Consensus       196 ~~~~~gt~~y~aPE~~~~------~~~~~~~DiwSlG~i------l~el~~G~~Pf~~  241 (364)
T cd05599         196 AYSTVGTPDYIAPEVFLQ------TGYNKECDWWSLGVI------MYEMLVGYPPFCS  241 (364)
T ss_pred             ccccccCccccCHHHHcC------CCCCCeeeeecchhH------HHHhhcCCCCCCC
Confidence            012358999999999873      347889999999863      2244557777653

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.96  E-value=1.1e-28  Score=195.06  Aligned_cols=151  Identities=17%  Similarity=0.222  Sum_probs=123.9

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+++++++ +||  ||++++++|.    .+...|+||||+ +++|.+.+...  +.+++..+..++.|++.||.|||
T Consensus        65 ~~~E~~~l~~l-~hp--~iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH  135 (329)
T PTZ00263         65 VAQEKSILMEL-SHP--FIVNMMCSFQ----DENRVYFLLEFVVGGELFTHLRKA--GRFPNDVAKFYHAELVLAFEYLH  135 (329)
T ss_pred             HHHHHHHHHhC-CCC--CCCcEEEEEE----cCCEEEEEEcCCCCChHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH
Confidence            45688888888 455  9999999998    567999999999 99999998775  45999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~  164 (202)
                      +. |++||||||+|||++.++.  ++|+|||.+......  .....+++.|+|||.+..      ..++.++|+||+|+.
T Consensus       136 ~~-~ivH~dlkp~NIll~~~~~--~kl~Dfg~~~~~~~~--~~~~~gt~~y~aPE~~~~------~~~~~~~DiwslG~i  204 (329)
T PTZ00263        136 SK-DIIYRDLKPENLLLDNKGH--VKVTDFGFAKKVPDR--TFTLCGTPEYLAPEVIQS------KGHGKAVDWWTMGVL  204 (329)
T ss_pred             HC-CeeecCCCHHHEEECCCCC--EEEeeccCceEcCCC--cceecCChhhcCHHHHcC------CCCCCcceeechHHH
Confidence            96 9999999999999998877  999999999876422  223578999999999873      336789999999863


Q ss_pred             HHHHHHHHHHHhcCCCCC
Q psy320          165 TTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~  182 (202)
                      .+      .+..|..+|.
T Consensus       205 l~------elltg~~pf~  216 (329)
T PTZ00263        205 LY------EFIAGYPPFF  216 (329)
T ss_pred             HH------HHHcCCCCCC
Confidence            22      3444666654

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=1.1e-28  Score=193.66  Aligned_cols=153  Identities=17%  Similarity=0.183  Sum_probs=123.8

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+.+++++ +||  ||++++++|.    .....|+||||+ +++|.+++.+.  +++++..++.++.|++.||.|||
T Consensus        40 ~~~E~~~l~~l-~h~--~iv~~~~~~~----~~~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH  110 (312)
T cd05585          40 TLAERTVLAQV-NCP--FIVPLKFSFQ----SPEKLYLVLAFINGGELFHHLQRE--GRFDLSRARFYTAELLCALENLH  110 (312)
T ss_pred             HHHHHHHHHhC-CCC--cEeceeeEEe----cCCeEEEEEcCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH
Confidence            34577777777 455  9999999998    567999999999 99999998765  45999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      +. |++||||||+||+++.++.  ++|+|||+++...... ......+++.|+|||.+..      ..++.++|+||+|+
T Consensus       111 ~~-~i~HrDlkp~Nili~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~DvwslGv  181 (312)
T cd05585         111 KF-NVIYRDLKPENILLDYQGH--IALCDFGLCKLNMKDDDKTNTFCGTPEYLAPELLLG------HGYTKAVDWWTLGV  181 (312)
T ss_pred             hC-CeEeCCCCHHHeEECCCCc--EEEEECcccccCccCCCccccccCCcccCCHHHHcC------CCCCCccceechhH
Confidence            96 9999999999999988776  9999999988643222 2224568999999999973      34788999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~  182 (202)
                      ..+      .+..|.++|.
T Consensus       182 il~------el~tg~~pf~  194 (312)
T cd05585         182 LLY------EMLTGLPPFY  194 (312)
T ss_pred             HHH------HHHhCCCCcC
Confidence            322      4445666664

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>KOG1187|consensus

Probab=99.96  E-value=2.7e-29  Score=199.49  Aligned_cols=158  Identities=22%  Similarity=0.198  Sum_probs=127.8

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCce-EEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGT-HVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~-~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      .+.+|+.++.+++ ||  |+++++|+|.+    +. +.+||+||+ +|||.+.+.......+++.....|+.+++.||.|
T Consensus       117 eF~~Ei~~ls~l~-H~--Nlv~LlGyC~e----~~~~~~LVYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~y  189 (361)
T KOG1187|consen  117 EFLNEVEILSRLR-HP--NLVKLLGYCLE----GGEHRLLVYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGAARGLAY  189 (361)
T ss_pred             HHHHHHHHHhcCC-Cc--CcccEEEEEec----CCceEEEEEEccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            4789999999995 55  99999999994    44 699999999 8999999976542268999999999999999999


Q ss_pred             HHhhCC--ccccCCCCCceeeecCCcceeEEeeccccccccc-ccCCCCC-CCCccchhhHHHHhhhhccCCCCCCCcch
Q psy320           83 LHTKHN--LVHTSIKPESIFFKADHVYIMTLINIQQATTHQE-CHDQQSS-SKTKSKIFCEILEQCRLNQDFRLDPRVDP  158 (202)
Q Consensus        83 lh~~~~--ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~-~~~~~~~-~~~~~~~ape~~~~~~~~~~~~~~~~~Di  158 (202)
                      ||..+.  |+||||||+|||++.+..  .||+|||+|+.... ....... .||..|++||......      .+.++|+
T Consensus       190 LH~~~~~~iiHrDiKssNILLD~~~~--aKlsDFGLa~~~~~~~~~~~~~~~gt~gY~~PEy~~~g~------lt~KsDV  261 (361)
T KOG1187|consen  190 LHEGCPPPIIHRDIKSSNILLDEDFN--AKLSDFGLAKLGPEGDTSVSTTVMGTFGYLAPEYASTGK------LTEKSDV  261 (361)
T ss_pred             HccCCCCCEecCCCCHHHeeECCCCC--EEccCccCcccCCccccceeeecCCCCccCChhhhccCC------cCccccc
Confidence            999764  999999999999998776  99999999966543 2211122 7999999999998433      6779999


Q ss_pred             hhHHHHHHHHHHHHHHHhcCCCCCC
Q psy320          159 TSIKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       159 wsl~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      ||+|+..+      .+..|+.....
T Consensus       262 ySFGVvll------Elitgr~~~d~  280 (361)
T KOG1187|consen  262 YSFGVVLL------ELITGRKAVDQ  280 (361)
T ss_pred             ccchHHHH------HHHhCCcccCC
Confidence            99997543      44557655443

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.96  E-value=1.1e-28  Score=198.71  Aligned_cols=154  Identities=20%  Similarity=0.248  Sum_probs=123.1

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+++++++ +||  ||++++++|.    ++.+.|+||||+ +++|.+++.+..  .+++..++.++.|++.||.|||
T Consensus        48 ~~~E~~il~~l-~h~--~iv~l~~~~~----~~~~~~lv~E~~~gg~L~~~l~~~~--~~~e~~~~~~~~qi~~aL~~LH  118 (381)
T cd05626          48 VKAERDILAEA-DNE--WVVKLYYSFQ----DKDNLYFVMDYIPGGDMMSLLIRME--VFPEVLARFYIAELTLAIESVH  118 (381)
T ss_pred             HHHHHHHHHhc-CCC--CeeeeEEEEe----cCCEEEEEEecCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHH
Confidence            45677777777 455  9999999998    567999999999 999999987753  4999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeeccccccccccc----------------------------------------
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH----------------------------------------  124 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~----------------------------------------  124 (202)
                      +. ||+||||||+|||++.++.  ++|+|||++.......                                        
T Consensus       119 ~~-givHrDlKp~Nili~~~~~--~kL~DFGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (381)
T cd05626         119 KM-GFIHRDIKPDNILIDLDGH--IKLTDFGLCTGFRWTHNSKYYQKGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQR  195 (381)
T ss_pred             hC-CeeecCCcHHHEEECCCCC--EEEeeCcCCcccccccccccccccccccccccCcccccccccccccccccchhhcc
Confidence            95 9999999999999988776  9999999975431100                                        


Q ss_pred             --------CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCC
Q psy320          125 --------DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       125 --------~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                              ......||+.|+|||.+..      ..++.++|+||+|+.      +..+..|.++|..
T Consensus       196 ~~~~~~~~~~~~~~gt~~Y~aPE~~~~------~~~~~~~DiwSlG~i------l~elltG~~Pf~~  250 (381)
T cd05626         196 ATKQHQRCLAHSLVGTPNYIAPEVLLR------KGYTQLCDWWSVGVI------LFEMLVGQPPFLA  250 (381)
T ss_pred             ccccccccccccccCCccccCHHHHcC------CCCCCccceeehhhH------HHHHHhCCCCCcC
Confidence                    0012468999999999873      347889999999863      2345557777754

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=7.3e-29  Score=192.86  Aligned_cols=152  Identities=17%  Similarity=0.223  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+++++.+ +||  ||+++++++.    +....|+||||+ +++|.+++...  +.+++..+..++.|++.||.|||
T Consensus        48 ~~~E~~~l~~l-~hp--~iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH  118 (291)
T cd05612          48 VHNEKRVLKEV-SHP--FIIRLFWTEH----DQRFLYMLMEYVPGGELFSYLRNS--GRFSNSTGLFYASEIVCALEYLH  118 (291)
T ss_pred             HHHHHHHHHhC-CCC--cHhhhHhhhc----cCCeEEEEEeCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH
Confidence            45678878877 455  9999999988    567999999999 89999998765  35999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~  164 (202)
                      ++ |++||||||+|||++.++.  ++|+|||.++....  ......+++.|+|||.+..      ..++.++|+||+|+.
T Consensus       119 ~~-~i~H~dlkp~NIli~~~~~--~kl~Dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~------~~~~~~~DiwSlG~i  187 (291)
T cd05612         119 SK-EIVYRDLKPENILLDKEGH--IKLTDFGFAKKLRD--RTWTLCGTPEYLAPEVIQS------KGHNKAVDWWALGIL  187 (291)
T ss_pred             HC-CeeecCCCHHHeEECCCCC--EEEEecCcchhccC--CcccccCChhhcCHHHHcC------CCCCchhhHHHHHHH
Confidence            96 9999999999999988776  99999999887642  2223568899999999873      336789999999863


Q ss_pred             HHHHHHHHHHHhcCCCCCC
Q psy320          165 TTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~  183 (202)
                      .+      .+..|..+|..
T Consensus       188 l~------~l~~g~~pf~~  200 (291)
T cd05612         188 IY------EMLVGYPPFFD  200 (291)
T ss_pred             HH------HHHhCCCCCCC
Confidence            22      34446666543

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>KOG0585|consensus

Probab=99.96  E-value=3.1e-29  Score=197.22  Aligned_cols=145  Identities=16%  Similarity=0.229  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCC-CCHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQP-APLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~-~~~~~~~~~~~qi~~~l~~   82 (202)
                      .-.+||.+++++ .||  |||+|+++...  +...++|||+||| .|.+...   ...+. +++.+++.+++.++.||+|
T Consensus       154 kv~~EIailKkl-~H~--nVV~LiEvLDD--P~s~~~YlVley~s~G~v~w~---p~d~~els~~~Ar~ylrDvv~GLEY  225 (576)
T KOG0585|consen  154 KVRREIAILKKL-HHP--NVVKLIEVLDD--PESDKLYLVLEYCSKGEVKWC---PPDKPELSEQQARKYLRDVVLGLEY  225 (576)
T ss_pred             HHHHHHHHHHhc-CCc--CeeEEEEeecC--cccCceEEEEEeccCCccccC---CCCcccccHHHHHHHHHHHHHHHHH
Confidence            456899999999 555  99999999863  3467999999999 6665432   12234 8999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc------CCCCCCCCccchhhHHHHhhhhccCCCC-CCC
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH------DQQSSSKTKSKIFCEILEQCRLNQDFRL-DPR  155 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~------~~~~~~~~~~~~ape~~~~~~~~~~~~~-~~~  155 (202)
                      ||.. ||+||||||+|+|++.++.  +||+|||.+..+....      .-....|||.|+|||.+....   +..+ +.+
T Consensus       226 LH~Q-giiHRDIKPsNLLl~~~g~--VKIsDFGVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~c~~~~---~~~~~g~a  299 (576)
T KOG0585|consen  226 LHYQ-GIIHRDIKPSNLLLSSDGT--VKISDFGVSNEFPQGSDEGSDDQLSRTVGTPAFFAPELCSGGN---SFSYSGFA  299 (576)
T ss_pred             HHhc-CeeccccchhheEEcCCCc--EEeeccceeeecccCCccccHHHHhhcCCCccccchHhhcCCC---Cccccchh
Confidence            9996 9999999999999999987  9999999998763211      112368999999999998533   2333 448


Q ss_pred             cchhhHHH
Q psy320          156 VDPTSIKM  163 (202)
Q Consensus       156 ~Diwsl~~  163 (202)
                      .||||+|+
T Consensus       300 ~DiWalGV  307 (576)
T KOG0585|consen  300 LDIWALGV  307 (576)
T ss_pred             hhhhhhhh
Confidence            99999964

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.96  E-value=2.1e-28  Score=193.34  Aligned_cols=155  Identities=19%  Similarity=0.189  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+.++.++.+||  ||+.++++|.    .....|+||||+ +++|..++...  +.+++..++.++.|++.||.|||
T Consensus        42 ~~~e~~~~~~~~~~~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~~--~~l~~~~~~~~~~qi~~al~~lH  113 (327)
T cd05617          42 VQTEKHVFEQASSNP--FLVGLHSCFQ----TTSRLFLVIEYVNGGDLMFHMQRQ--RKLPEEHARFYAAEICIALNFLH  113 (327)
T ss_pred             HHHHHHHHHhhcCCC--CEeeEEEEEE----eCCEEEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH
Confidence            446777777775555  9999999998    566899999999 99999888765  35999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccc-cCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQEC-HDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~-~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      ++ |++||||||+|||++.++.  ++|+|||+++..... .......+++.|+|||.+..      ..++.++|+||+|+
T Consensus       114 ~~-~ivHrDlkp~Nili~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~DiwslGv  184 (327)
T cd05617         114 ER-GIIYRDLKLDNVLLDADGH--IKLTDYGMCKEGLGPGDTTSTFCGTPNYIAPEILRG------EEYGFSVDWWALGV  184 (327)
T ss_pred             HC-CeeccCCCHHHEEEeCCCC--EEEeccccceeccCCCCceecccCCcccCCHHHHCC------CCCCchheeehhHH
Confidence            96 9999999999999998877  999999998754322 22234578999999999873      34778999999997


Q ss_pred             HHHHHHHHHHHHhcCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~  183 (202)
                      .      +..+..|..+|..
T Consensus       185 i------l~ell~g~~pf~~  198 (327)
T cd05617         185 L------MFEMMAGRSPFDI  198 (327)
T ss_pred             H------HHHHHhCCCCCCc
Confidence            3      3355568888853

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.96  E-value=1.7e-28  Score=193.29  Aligned_cols=154  Identities=18%  Similarity=0.189  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            7 TNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         7 ~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      .+|++++..+.+||  ||++++++|.    .....|+||||+ +++|.+++.+.  +++++..+..++.|++.||.|||+
T Consensus        43 ~~e~~~l~~~~~h~--~iv~~~~~~~----~~~~~~iv~Ey~~~g~L~~~i~~~--~~l~~~~~~~~~~ql~~~L~~lH~  114 (320)
T cd05590          43 MTEKRILSLARNHP--FLTQLYCCFQ----TPDRLFFVMEFVNGGDLMFHIQKS--RRFDEARARFYAAEITSALMFLHD  114 (320)
T ss_pred             HHHHHHHHhccCCC--chhceeeEEE----cCCEEEEEEcCCCCchHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            45666666654455  9999999998    567999999999 89999988765  459999999999999999999999


Q ss_pred             hCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHH
Q psy320           86 KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~  164 (202)
                      . |++||||||+|||++.++.  ++|+|||+++...... ......+++.|+|||.+..      ..++.++|+||+|+.
T Consensus       115 ~-~ivH~dlkp~NIli~~~~~--~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~DiwslG~i  185 (320)
T cd05590         115 K-GIIYRDLKLDNVLLDHEGH--CKLADFGMCKEGIFNGKTTSTFCGTPDYIAPEILQE------MLYGPSVDWWAMGVL  185 (320)
T ss_pred             C-CeEeCCCCHHHeEECCCCc--EEEeeCCCCeecCcCCCcccccccCccccCHHHHcC------CCCCCccchhhhHHH
Confidence            6 9999999999999998877  9999999987643222 2224568999999999873      347789999999863


Q ss_pred             HHHHHHHHHHHhcCCCCCC
Q psy320          165 TTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~  183 (202)
                      .+      .+..|..+|..
T Consensus       186 l~------el~~g~~Pf~~  198 (320)
T cd05590         186 LY------EMLCGHAPFEA  198 (320)
T ss_pred             HH------HHhhCCCCCCC
Confidence            22      44447766643

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.96  E-value=1.4e-28  Score=194.48  Aligned_cols=154  Identities=19%  Similarity=0.199  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+.+++.+.+||  ||++++++|.    .....|+||||+ +++|.+++.+.  +++++..++.++.|++.||.|||
T Consensus        42 ~~~e~~il~~~~~hp--~Iv~~~~~~~----~~~~~~lv~e~~~~g~L~~~~~~~--~~l~~~~~~~~~~qi~~~l~~lH  113 (329)
T cd05588          42 VQTEKHVFETASNHP--FLVGLHSCFQ----TESRLFFVIEFVSGGDLMFHMQRQ--RKLPEEHARFYSAEISLALNFLH  113 (329)
T ss_pred             HHHHHHHHHhccCCC--CCCceEEEEE----cCCEEEEEEeCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH
Confidence            345677777775555  9999999998    567999999999 89999888665  45999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccc-cCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQEC-HDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~-~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      ++ |++||||||+||+++.++.  ++|+|||+++..... .......+++.|+|||.+..      ..++.++|+||+|+
T Consensus       114 ~~-~ivH~dlkp~Nili~~~~~--~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~DiwslG~  184 (329)
T cd05588         114 ER-GIIYRDLKLDNVLLDAEGH--IKLTDYGMCKEGIRPGDTTSTFCGTPNYIAPEILRG------EDYGFSVDWWALGV  184 (329)
T ss_pred             HC-CeEecCCCHHHeEECCCCC--EEECcCccccccccCCCccccccCCccccCHHHHcC------CCCCCccceechHH
Confidence            96 9999999999999998776  999999998753222 22234578999999999873      34778999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~  182 (202)
                      .      +..+..|..+|.
T Consensus       185 ~------l~el~~g~~Pf~  197 (329)
T cd05588         185 L------MFEMMAGRSPFD  197 (329)
T ss_pred             H------HHHHHHCCCCcc
Confidence            3      334555888875

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.96  E-value=2e-28  Score=196.53  Aligned_cols=156  Identities=17%  Similarity=0.208  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            7 TNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         7 ~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      .+|+.+++.+ +||  ||+++++++.    .+...|+||||+ +++|.+++...   .+++..++.++.|++.||.|||+
T Consensus        91 ~~e~~i~~~~-~hp--~iv~~~~~~~----~~~~~~lv~Ey~~gg~L~~~~~~~---~~~~~~~~~~~~qi~~aL~~LH~  160 (371)
T cd05622          91 WEERDIMAFA-NSP--WVVQLFYAFQ----DDRYLYMVMEYMPGGDLVNLMSNY---DVPEKWARFYTAEVVLALDAIHS  160 (371)
T ss_pred             HHHHHHHHhC-CCC--CCCeEEEEEE----cCCEEEEEEcCCCCCcHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHH
Confidence            4566666666 455  9999999998    567999999999 89999998654   38999999999999999999999


Q ss_pred             hCCccccCCCCCceeeecCCcceeEEeecccccccccccC--CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           86 KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD--QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~--~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      + ||+||||||+|||++.++.  ++|+|||.+........  .....||+.|+|||++....  ....++.++|+||+|+
T Consensus       161 ~-~ivHrDLkp~NIll~~~~~--ikL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~--~~~~~~~~~DiwSlGv  235 (371)
T cd05622         161 M-GFIHRDVKPDNMLLDKSGH--LKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQG--GDGYYGRECDWWSVGV  235 (371)
T ss_pred             C-CEEeCCCCHHHEEECCCCC--EEEEeCCceeEcCcCCcccccCcccCccccCHHHHhccC--CCccCCCccceeehhH
Confidence            6 9999999999999998876  99999999987653322  22457899999999997432  1223677999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~  183 (202)
                      ..      ..+..|.+||..
T Consensus       236 il------yell~G~~Pf~~  249 (371)
T cd05622         236 FL------YEMLVGDTPFYA  249 (371)
T ss_pred             HH------HHHHhCCCCCCC
Confidence            32      244446666653

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.96  E-value=2e-28  Score=192.85  Aligned_cols=155  Identities=18%  Similarity=0.174  Sum_probs=123.8

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ...|.+++..+.+||  ||++++++|.    .+...|+||||+ +++|...+...  +.+++..+..++.|++.||.|||
T Consensus        42 ~~~e~~il~~~~~hp--~i~~~~~~~~----~~~~~~lv~E~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH  113 (321)
T cd05591          42 TMTEKRILALAAKHP--FLTALHCCFQ----TKDRLFFVMEYVNGGDLMFQIQRS--RKFDEPRSRFYAAEVTLALMFLH  113 (321)
T ss_pred             HHHHHHHHHhccCCC--CccceeeEEE----cCCeEEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH
Confidence            345666666664555  9999999998    567899999999 89999888765  45999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccc-cCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQEC-HDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~-~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      +. |++||||||+||+++.++.  ++|+|||.+...... .......+++.|+|||.+..      ..++.++|+||+|+
T Consensus       114 ~~-~ivHrDikp~Nill~~~~~--~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~DvwslG~  184 (321)
T cd05591         114 RH-GVIYRDLKLDNILLDAEGH--CKLADFGMCKEGILNGVTTTTFCGTPDYIAPEILQE------LEYGPSVDWWALGV  184 (321)
T ss_pred             HC-CeeccCCCHHHeEECCCCC--EEEeecccceecccCCccccccccCccccCHHHHcC------CCCCCccceechhH
Confidence            96 9999999999999998876  999999998764322 22234568999999999873      34788999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~  183 (202)
                      ..+      .+..|.++|..
T Consensus       185 il~------el~tg~~Pf~~  198 (321)
T cd05591         185 LMY------EMMAGQPPFEA  198 (321)
T ss_pred             HHH------HHhcCCCCCCC
Confidence            322      44457666643

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.96  E-value=2.6e-28  Score=190.73  Aligned_cols=157  Identities=17%  Similarity=0.196  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      .+.+|+++++.+ +||  ||+++++++.    .....|+||||+.++|.+++.... +.+++..++.++.|++.||.|||
T Consensus        49 ~~~~E~~~l~~l-~h~--niv~~~~~~~----~~~~~~lv~e~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~al~~lH  120 (303)
T cd07869          49 TAIREASLLKGL-KHA--NIVLLHDIIH----TKETLTLVFEYVHTDLCQYMDKHP-GGLHPENVKLFLFQLLRGLSYIH  120 (303)
T ss_pred             hHHHHHHHHhhC-CCC--CcCeEEEEEe----cCCeEEEEEECCCcCHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHH
Confidence            456788888888 555  9999999998    567899999999889988887653 45899999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      +. |++||||||+|||++.++.  +||+|||.+....... ......+++.|+|||.+...     ..++.++|+||+|+
T Consensus       121 ~~-~ivH~dlkp~Nill~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-----~~~~~~~DiwslG~  192 (303)
T cd07869         121 QR-YILHRDLKPQNLLISDTGE--LKLADFGLARAKSVPSHTYSNEVVTLWYRPPDVLLGS-----TEYSTCLDMWGVGC  192 (303)
T ss_pred             HC-CeecCCCCHHHEEECCCCC--EEECCCCcceeccCCCccCCCCcccCCCCChHHHcCC-----CCCCcHHHHHHHHH
Confidence            96 9999999999999988776  9999999987643222 22235678899999998632     23667899999987


Q ss_pred             HHHHHHHHHHHHhcCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~  183 (202)
                      .      +..+..|.++|..
T Consensus       193 i------l~~l~~g~~pf~~  206 (303)
T cd07869         193 I------FVEMIQGVAAFPG  206 (303)
T ss_pred             H------HHHHHhCCCCCCC
Confidence            3      2245557777753

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.96  E-value=1.4e-28  Score=193.92  Aligned_cols=152  Identities=19%  Similarity=0.196  Sum_probs=121.9

Q ss_pred             HHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            7 TNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         7 ~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      .+|+++++.+ +||  ||++++++|.    .....|+||||+ +++|..++...  +.+++..++.++.|++.||.|||+
T Consensus        43 ~~E~~~l~~l-~hp--~i~~~~~~~~----~~~~~~lv~E~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH~  113 (323)
T cd05595          43 VTESRVLQNT-RHP--FLTALKYAFQ----THDRLCFVMEYANGGELFFHLSRE--RVFTEERARFYGAEIVSALEYLHS  113 (323)
T ss_pred             HHHHHHHHhC-CCC--CCcceeeEEe----cCCEEEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            3567777777 454  9999999998    566999999999 99999888765  359999999999999999999999


Q ss_pred             hCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHH
Q psy320           86 KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~  164 (202)
                      + |++||||||+|||++.++.  ++|+|||++....... ......+++.|+|||.+..      ..++.++|+||+|+.
T Consensus       114 ~-~ivH~Dlkp~NIll~~~~~--~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~DiwSlGvi  184 (323)
T cd05595         114 R-DVVYRDIKLENLMLDKDGH--IKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLED------NDYGRAVDWWGLGVV  184 (323)
T ss_pred             C-CeEecCCCHHHEEEcCCCC--EEecccHHhccccCCCCccccccCCcCcCCcccccC------CCCCchhchhhhHHH
Confidence            6 9999999999999998876  9999999987643222 2224568999999999873      347789999999863


Q ss_pred             HHHHHHHHHHHhcCCCCC
Q psy320          165 TTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~  182 (202)
                      .+      .+..|..+|.
T Consensus       185 l~------ell~g~~Pf~  196 (323)
T cd05595         185 MY------EMMCGRLPFY  196 (323)
T ss_pred             HH------HHHhCCCCCC
Confidence            22      4444666664

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.96  E-value=1.7e-28  Score=193.85  Aligned_cols=153  Identities=17%  Similarity=0.169  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+++++.+ +|  |||+++.++|.    .....|+||||+ +++|...+...  +.+++..+..++.|++.||.|||
T Consensus        42 ~~~E~~~l~~l-~h--p~iv~~~~~~~----~~~~~~lv~Ey~~~g~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~LH  112 (328)
T cd05593          42 TLTESRVLKNT-RH--PFLTSLKYSFQ----TKDRLCFVMEYVNGGELFFHLSRE--RVFSEDRTRFYGAEIVSALDYLH  112 (328)
T ss_pred             HHHHHHHHHhC-CC--CCCcceEEEEE----cCCEEEEEEeCCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH
Confidence            34567777666 44  49999999998    567999999999 99999888765  45999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccc-cCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQEC-HDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~-~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      ++ |++||||||+|||++.++.  +||+|||+++..... .......+++.|+|||.+..      ..++.++|+||+|+
T Consensus       113 ~~-~ivHrDikp~NIll~~~~~--~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~DiwslGv  183 (328)
T cd05593         113 SG-KIVYRDLKLENLMLDKDGH--IKITDFGLCKEGITDAATMKTFCGTPEYLAPEVLED------NDYGRAVDWWGLGV  183 (328)
T ss_pred             hC-CeEecccCHHHeEECCCCc--EEEecCcCCccCCCcccccccccCCcCccChhhhcC------CCCCccCCccccch
Confidence            96 9999999999999998776  999999998764322 22223568999999999873      33778999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~  182 (202)
                      ..+      .+..|..+|.
T Consensus       184 il~------elltG~~Pf~  196 (328)
T cd05593         184 VMY------EMMCGRLPFY  196 (328)
T ss_pred             HHH------HHhhCCCCCC
Confidence            322      4444766664

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.96  E-value=7.7e-29  Score=199.20  Aligned_cols=154  Identities=19%  Similarity=0.215  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+++++++ +|+  ||+++++.|.    .+...|+||||+ +++|.+++.+.  +.+++..++.++.|++.||.|||
T Consensus        48 ~~~E~~il~~l-~h~--~iv~~~~~~~----~~~~~~lv~E~~~~g~L~~~i~~~--~~~~~~~~~~~~~qi~~al~~lH  118 (376)
T cd05598          48 VKAERDILAEA-DNE--WVVKLYYSFQ----DKDNLYFVMDYIPGGDMMSLLIRL--GIFEEDLARFYIAELTCAIESVH  118 (376)
T ss_pred             HHHHHHHHHhC-CCC--CcceEEEEEE----cCCEEEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH
Confidence            45688888888 455  9999999998    567999999999 99999999775  35899999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeeccccccccccc----------------------------------------
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH----------------------------------------  124 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~----------------------------------------  124 (202)
                      +. ||+||||||+|||++.++.  ++|+|||+|..+....                                        
T Consensus       119 ~~-~ivHrDlkp~Nill~~~~~--ikL~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (376)
T cd05598         119 KM-GFIHRDIKPDNILIDRDGH--IKLTDFGLCTGFRWTHDSKYYQKGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQ  195 (376)
T ss_pred             HC-CeEeCCCCHHHEEECCCCC--EEEEeCCCCccccccccccccccccccccccccccccccccccccccchhhhhhhh
Confidence            96 9999999999999998876  9999999975321000                                        


Q ss_pred             ----CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCC
Q psy320          125 ----DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       125 ----~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                          ......|++.|+|||++..      ..++.++|+||+|+.      +..++.|.++|..
T Consensus       196 ~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~DiwSlGvi------lyell~G~~Pf~~  246 (376)
T cd05598         196 HQRCLAHSLVGTPNYIAPEVLLR------TGYTQLCDWWSVGVI------LYEMLVGQPPFLA  246 (376)
T ss_pred             cccccccccCCCccccCHHHHcC------CCCCcceeeeeccce------eeehhhCCCCCCC
Confidence                0012368999999999973      347789999999863      2244457777754

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.96  E-value=2.8e-28  Score=192.84  Aligned_cols=156  Identities=16%  Similarity=0.161  Sum_probs=125.6

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|++++..+++|+  ||+.++++|.    .....++||||+ +++|.+++.+.  +.+++..++.++.|++.||.|||
T Consensus        51 ~~~e~~~l~~l~~~~--~i~~~~~~~~----~~~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH  122 (332)
T cd05614          51 TRTERNVLEHVRQSP--FLVTLHYAFQ----TEAKLHLILDYVSGGEMFTHLYQR--DNFSEDEVRFYSGEIILALEHLH  122 (332)
T ss_pred             HHHHHHHHHhccCCC--CcccEEEEEe----cCCEEEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH
Confidence            456788888885555  9999999998    566899999999 89999998765  34999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC--CCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ--QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~--~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      +. |++||||||+|||++.++.  ++|+|||+++........  ....+++.|+|||.+..     ...++.++|+||+|
T Consensus       123 ~~-~ivHrDlkp~Nili~~~~~--~kl~DfG~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~~DiwslG  194 (332)
T cd05614         123 KL-GIVYRDIKLENILLDSEGH--VVLTDFGLSKEFLSEEKERTYSFCGTIEYMAPEIIRG-----KGGHGKAVDWWSLG  194 (332)
T ss_pred             HC-CcEecCCCHHHeEECCCCC--EEEeeCcCCccccccCCCccccccCCccccCHHHhcC-----CCCCCCccccccch
Confidence            96 9999999999999998876  999999999865432222  23568999999999872     22356789999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +.      +..+..|..+|..
T Consensus       195 ~i------l~elltg~~pf~~  209 (332)
T cd05614         195 IL------IFELLTGASPFTL  209 (332)
T ss_pred             hh------hhhhhcCCCCCCC
Confidence            63      3355557777753

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.96  E-value=1.9e-28  Score=193.21  Aligned_cols=154  Identities=20%  Similarity=0.199  Sum_probs=123.8

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+.+++.+ +||  ||++++++|.    .+...|+||||+ +++|.+.+.+.  +.+++..+..++.|++.||.|||
T Consensus        47 ~~~E~~il~~l-~hp--~iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH  117 (323)
T cd05584          47 TKAERNILEAV-KHP--FIVDLIYAFQ----TGGKLYLILEYLSGGELFMHLERE--GIFMEDTACFYLSEISLALEHLH  117 (323)
T ss_pred             HHHHHHHHHhC-CCC--chhceeeEEe----cCCeEEEEEeCCCCchHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH
Confidence            34678888888 455  9999999998    466899999999 89999998765  34899999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      +. |++||||||+|||++.++.  ++|+|||+++...... ......+++.|+|||.+...      .++.++|+||+|+
T Consensus       118 ~~-~ivH~dlkp~Nil~~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~~DiwslG~  188 (323)
T cd05584         118 QQ-GIIYRDLKPENILLDAQGH--VKLTDFGLCKESIHEGTVTHTFCGTIEYMAPEILMRS------GHGKAVDWWSLGA  188 (323)
T ss_pred             HC-CeecCCCCHHHeEECCCCC--EEEeeCcCCeecccCCCcccccCCCccccChhhccCC------CCCCcceecccHH
Confidence            96 9999999999999988876  9999999987543222 22245789999999998733      3677999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~  183 (202)
                      ..      ..+..|.++|..
T Consensus       189 il------~ell~G~~pf~~  202 (323)
T cd05584         189 LM------YDMLTGAPPFTA  202 (323)
T ss_pred             HH------HHHhcCCCCCCC
Confidence            32      244457666654

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.96  E-value=3e-28  Score=191.52  Aligned_cols=152  Identities=18%  Similarity=0.198  Sum_probs=120.8

Q ss_pred             HHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q psy320            8 NLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTK   86 (202)
Q Consensus         8 ~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~   86 (202)
                      .|..++....+|  |||+++++++.    .+...|+||||+ +++|.+++...  +++++..+..++.|++.||.|||+.
T Consensus        44 ~e~~~l~~~~~h--p~i~~~~~~~~----~~~~~~lv~e~~~gg~L~~~~~~~--~~~~~~~~~~~~~qi~~al~~LH~~  115 (316)
T cd05592          44 VERRVLALAWEH--PFLTHLFCTFQ----TKEHLFFVMEYLNGGDLMFHIQSS--GRFDEARARFYAAEIICGLQFLHKK  115 (316)
T ss_pred             HHHHHHHhccCC--CCccceeeEEE----cCCEEEEEEcCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            344444444344  59999999998    567999999999 99999988765  3599999999999999999999996


Q ss_pred             CCccccCCCCCceeeecCCcceeEEeecccccccccc-cCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHH
Q psy320           87 HNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQEC-HDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYT  165 (202)
Q Consensus        87 ~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~-~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~  165 (202)
                       |++||||||+||+++.++.  ++|+|||+++..... .......+++.|+|||.+..      ..++.++|+||+|+..
T Consensus       116 -~ivH~dlkp~Nill~~~~~--~kL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~DvwslG~il  186 (316)
T cd05592         116 -GIIYRDLKLDNVLLDKDGH--IKIADFGMCKENMNGEGKASTFCGTPDYIAPEILKG------QKYNESVDWWSFGVLL  186 (316)
T ss_pred             -CEEeCCCCHHHeEECCCCC--EEEccCcCCeECCCCCCccccccCCccccCHHHHcC------CCCCCcccchhHHHHH
Confidence             9999999999999998876  999999999764322 22224578999999999873      3377899999998632


Q ss_pred             HHHHHHHHHHhcCCCCC
Q psy320          166 TFCEILEQCRLNHQDFR  182 (202)
Q Consensus       166 ~~~~~~~~~~~~~~~~~  182 (202)
                      +      .+..|..+|.
T Consensus       187 ~------ell~G~~Pf~  197 (316)
T cd05592         187 Y------EMLIGQSPFH  197 (316)
T ss_pred             H------HHHhCCCCCC
Confidence            2      4445766665

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.96  E-value=2.9e-28  Score=195.50  Aligned_cols=157  Identities=16%  Similarity=0.189  Sum_probs=124.7

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      +.+|+.+++.+ +||  ||+++++++.    .+...|+||||+ +++|.+++...   .+++..+..++.|++.||.|||
T Consensus        90 ~~~e~~il~~~-~h~--~iv~~~~~~~----~~~~~~lv~Ey~~gg~L~~~l~~~---~l~~~~~~~~~~qi~~aL~~LH  159 (370)
T cd05596          90 FWEERDIMAHA-NSE--WIVQLHYAFQ----DDKYLYMVMEYMPGGDLVNLMSNY---DIPEKWARFYTAEVVLALDAIH  159 (370)
T ss_pred             HHHHHHHHHhC-CCC--CcceEEEEEe----cCCEEEEEEcCCCCCcHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHH
Confidence            44677777777 455  9999999998    577999999999 99999988653   3899999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccC--CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD--QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~--~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      +. |++||||||+|||++.++.  ++|+|||.+........  .....|++.|+|||.+....  ....++.++|+||+|
T Consensus       160 ~~-~ivHrDLkp~NILl~~~~~--~kL~DfG~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~~~~~DiwSlG  234 (370)
T cd05596         160 SM-GFIHRDVKPDNMLLDKSGH--LKLADFGTCMKMDANGMVRCDTAVGTPDYISPEVLKSQG--GDGYYGRECDWWSVG  234 (370)
T ss_pred             HC-CeeccCCCHHHEEEcCCCC--EEEEeccceeeccCCCcccCCCCCCCcCeECHHHhccCC--CCCCCCCceeeeehh
Confidence            96 9999999999999998877  99999999987643322  12457899999999987432  123367799999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +..+      .+..|.++|..
T Consensus       235 vily------elltG~~Pf~~  249 (370)
T cd05596         235 VFLY------EMLVGDTPFYA  249 (370)
T ss_pred             HHHH------HHHhCCCCcCC
Confidence            6322      44446666654

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=2.2e-28  Score=193.52  Aligned_cols=152  Identities=18%  Similarity=0.167  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|++++..+ +|  |||+++++++.    .+...|+||||+ +++|.+++...  +.+++..++.++.|++.||.|||
T Consensus        48 ~~~e~~~l~~~-~h--~~iv~~~~~~~----~~~~~~lv~e~~~g~~L~~~l~~~--~~l~~~~~~~~~~qi~~~l~~lH  118 (333)
T cd05600          48 VLTERDILTTT-KS--EWLVKLLYAFQ----DDEYLYLAMEYVPGGDFRTLLNNL--GVLSEDHARFYMAEMFEAVDALH  118 (333)
T ss_pred             HHHHHHHHHhC-CC--CCCccEEEEEE----cCCEEEEEEeCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH
Confidence            34577777777 34  49999999998    567999999999 99999999765  34899999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~  164 (202)
                      +. |++||||||+||+++.++.  +||+|||.+.....  ......+++.|+|||.+...      .++.++|+||+|+.
T Consensus       119 ~~-~ivH~dlkp~Nil~~~~~~--~kL~Dfg~a~~~~~--~~~~~~gt~~y~aPE~~~~~------~~~~~~DvwslG~i  187 (333)
T cd05600         119 EL-GYIHRDLKPENFLIDASGH--IKLTDFGLSKGIVT--YANSVVGSPDYMAPEVLRGK------GYDFTVDYWSLGCM  187 (333)
T ss_pred             HC-CccccCCCHHHEEECCCCC--EEEEeCcCCccccc--ccCCcccCccccChhHhcCC------CCCCccceecchHH
Confidence            96 9999999999999988776  99999999987643  23345789999999998733      47889999999863


Q ss_pred             HHHHHHHHHHHhcCCCCCC
Q psy320          165 TTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~  183 (202)
                      .      ..+..|.++|..
T Consensus       188 l------~ell~g~~pf~~  200 (333)
T cd05600         188 L------YEFLCGFPPFSG  200 (333)
T ss_pred             H------hhhhhCCCCCCC
Confidence            2      244457666643

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.96  E-value=2.9e-28  Score=192.18  Aligned_cols=155  Identities=15%  Similarity=0.148  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            7 TNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         7 ~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      .+|++++..++...||||++++++|.    .+...|+||||+ +++|...+..   +.+++..+..++.|++.||.|||+
T Consensus        47 ~~e~~~~~~~~~l~hp~i~~~~~~~~----~~~~~~lv~E~~~~~~L~~~~~~---~~l~~~~~~~~~~qi~~al~~lH~  119 (324)
T cd05589          47 MCEKRIFETANSERHPFLVNLFACFQ----TEDHVCFVMEYAAGGDLMMHIHT---DVFSEPRAVFYAACVVLGLQYLHE  119 (324)
T ss_pred             HHHHHHHHhccccCCCChhceeeEEE----cCCEEEEEEcCCCCCcHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHHh
Confidence            34555555554444679999999998    567999999999 8999887754   359999999999999999999999


Q ss_pred             hCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHH
Q psy320           86 KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~  164 (202)
                      . |++||||||+||+++.++.  +||+|||+++...... ......+++.|+|||.+..      ..++.++|+||+|+.
T Consensus       120 ~-~ivHrdlkp~Nill~~~~~--~kL~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~------~~~~~~~DiwslG~i  190 (324)
T cd05589         120 N-KIVYRDLKLDNLLLDTEGF--VKIADFGLCKEGMGFGDRTSTFCGTPEFLAPEVLTE------TSYTRAVDWWGLGVL  190 (324)
T ss_pred             C-CeEecCCCHHHeEECCCCc--EEeCcccCCccCCCCCCcccccccCccccCHhHhcC------CCCCcccchhhHHHH
Confidence            6 9999999999999998876  9999999987543222 2224568999999999873      337789999999863


Q ss_pred             HHHHHHHHHHHhcCCCCCC
Q psy320          165 TTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~  183 (202)
                      .      ..+..|..+|..
T Consensus       191 l------~el~~G~~pf~~  203 (324)
T cd05589         191 I------YEMLVGESPFPG  203 (324)
T ss_pred             H------HHHHhCCCCCCC
Confidence            2      244457777653

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.96  E-value=5.6e-28  Score=187.24  Aligned_cols=163  Identities=20%  Similarity=0.182  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEec-CCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTG-INGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~-~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+.+++.++...||||+++++++.... ......++|+||+.++|.+++.......+++..++.++.|++.||.|+
T Consensus        45 ~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~l  124 (288)
T cd07863          45 STVREVALLKRLEAFDHPNIVRLMDVCATSRTDRETKVTLVFEHVDQDLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFL  124 (288)
T ss_pred             HHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCceEEEEEcccccCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            3456888888886445669999999987432 235679999999988999988776555699999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |+. |++|+||||+||+++.++.  ++|+|||.+.............++..|+|||.+...      .++.++|+||+|+
T Consensus       125 H~~-~ivH~dikp~Nili~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~------~~~~~~DiwslG~  195 (288)
T cd07863         125 HAN-CIVHRDLKPENILVTSGGQ--VKLADFGLARIYSCQMALTPVVVTLWYRAPEVLLQS------TYATPVDMWSVGC  195 (288)
T ss_pred             HhC-CeecCCCCHHHEEECCCCC--EEECccCccccccCcccCCCccccccccCchHhhCC------CCCCcchhhhHHH
Confidence            996 9999999999999998877  999999999876543333345678899999998733      3778999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~  182 (202)
                      ..+      .+..|.++|.
T Consensus       196 ~l~------~l~~g~~~f~  208 (288)
T cd07863         196 IFA------EMFRRKPLFC  208 (288)
T ss_pred             HHH------HHHhCCcCcC
Confidence            322      3334666654

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>KOG0607|consensus

Probab=99.96  E-value=2.2e-28  Score=184.59  Aligned_cols=171  Identities=19%  Similarity=0.276  Sum_probs=136.1

Q ss_pred             chHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Q psy320            3 TNYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLN   81 (202)
Q Consensus         3 ~~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~   81 (202)
                      |....+|++++.+.+.|+  ||++++++|+    +...+|||||-| ||+|.+.+.+.  +.|.+..+..+...|+.||.
T Consensus       119 R~RvfREVe~f~~Cqgh~--nilqLiefFE----dd~~FYLVfEKm~GGplLshI~~~--~~F~E~EAs~vvkdia~aLd  190 (463)
T KOG0607|consen  119 RSRVFREVETFYQCQGHK--NILQLIEFFE----DDTRFYLVFEKMRGGPLLSHIQKR--KHFNEREASRVVKDIASALD  190 (463)
T ss_pred             HHHHHHHHHHHHHhcCCc--cHHHHHHHhc----ccceEEEEEecccCchHHHHHHHh--hhccHHHHHHHHHHHHHHHH
Confidence            345568999999998888  9999999999    577999999999 99999999877  45999999999999999999


Q ss_pred             HHHhhCCccccCCCCCceeeecCCc-ceeEEeeccccccccc--cc----CCC--CCCCCccchhhHHHHhhhhccCCCC
Q psy320           82 HLHTKHNLVHTSIKPESIFFKADHV-YIMTLINIQQATTHQE--CH----DQQ--SSSKTKSKIFCEILEQCRLNQDFRL  152 (202)
Q Consensus        82 ~lh~~~~ivH~dl~p~nil~~~~~~-~~~~l~Dfg~a~~~~~--~~----~~~--~~~~~~~~~ape~~~~~~~~~~~~~  152 (202)
                      +||.+ ||.|||+||+|||-...+. .-+|||||.+......  ..    ++.  ..+|+..|||||+...-. ....-|
T Consensus       191 FlH~k-gIAHRDlKPENiLC~~pn~vsPvKiCDfDLgSg~k~~~~~spastP~L~tPvGSAEfMAPEVVd~fv-~qA~~Y  268 (463)
T KOG0607|consen  191 FLHTK-GIAHRDLKPENILCESPNKVSPVKICDFDLGSGIKLNNDCSPASTPELLTPVGSAEFMAPEVVDVFV-DQATFY  268 (463)
T ss_pred             HHhhc-CcccccCCccceeecCCCCcCceeeeccccccccccCCCCCCCCCccccCcccchhhcchhHHhhhc-cccccc
Confidence            99998 9999999999999987653 3489999977654321  11    111  347778899999987432 234458


Q ss_pred             CCCcchhhHHH--HHHHH--------------------------HHHHHHHhcCCCCCC
Q psy320          153 DPRVDPTSIKM--YTTFC--------------------------EILEQCRLNHQDFRP  183 (202)
Q Consensus       153 ~~~~Diwsl~~--~~~~~--------------------------~~~~~~~~~~~~~~~  183 (202)
                      +.++|.||||+  |.|++                          .+|+.+..|...|+.
T Consensus       269 DKrCDlwSLGvIlYImLsGYpPFvG~Cg~dCGWdrGe~Cr~CQ~~LFesIQEGkYeFPd  327 (463)
T KOG0607|consen  269 DKRCDLWSLGVILYIMLSGYPPFVGHCGADCGWDRGEVCRVCQNKLFESIQEGKYEFPD  327 (463)
T ss_pred             cccccHHHHHHHHHHHHhCCCCccCccCCcCCccCCCccHHHHHHHHHHHhccCCcCCh
Confidence            89999999964  55555                          677777777776664

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.96  E-value=2.3e-28  Score=193.20  Aligned_cols=154  Identities=19%  Similarity=0.188  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+.++.++.+||  ||++++++|.    .....|+||||+ +++|...+.+.  +++++..++.++.|++.||.|||
T Consensus        42 ~~~E~~~l~~~~~hp--~iv~~~~~~~----~~~~~~lv~E~~~~~~L~~~~~~~--~~l~~~~~~~i~~qi~~~l~~lH  113 (329)
T cd05618          42 VQTEKHVFEQASNHP--FLVGLHSCFQ----TESRLFFVIEYVNGGDLMFHMQRQ--RKLPEEHARFYSAEISLALNYLH  113 (329)
T ss_pred             HHHHHHHHHhcCCCC--cCCceeeEEE----eCCEEEEEEeCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH
Confidence            345666666664555  9999999998    466999999999 89998887665  45999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      ++ |++||||||+||+++.++.  ++|+|||+++...... ......++..|+|||.+..      ..++.++|+||+|+
T Consensus       114 ~~-~ivH~Dikp~Nili~~~~~--~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~DiwslG~  184 (329)
T cd05618         114 ER-GIIYRDLKLDNVLLDSEGH--IKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRG------EDYGFSVDWWALGV  184 (329)
T ss_pred             HC-CeeeCCCCHHHEEECCCCC--EEEeeCCccccccCCCCccccccCCccccCHHHHcC------CCCCCccceecccH
Confidence            95 9999999999999998877  9999999987643222 2224578999999999974      33778999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~  182 (202)
                      .      +..+..|..+|.
T Consensus       185 i------l~el~~g~~Pf~  197 (329)
T cd05618         185 L------MFEMMAGRSPFD  197 (329)
T ss_pred             H------HHHHhhCCCCCc
Confidence            3      335555888774

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.96  E-value=3.6e-28  Score=188.65  Aligned_cols=157  Identities=17%  Similarity=0.199  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ...+|+++++.+ +||  ||+++++++.    .....++||||+.++|.+++.... ..+++..+..++.|++.||.|||
T Consensus        49 ~~~~E~~~l~~l-~h~--niv~~~~~~~----~~~~~~lv~e~~~~~l~~~l~~~~-~~~~~~~~~~~~~qi~~aL~~LH  120 (288)
T cd07871          49 TAIREVSLLKNL-KHA--NIVTLHDIIH----TERCLTLVFEYLDSDLKQYLDNCG-NLMSMHNVKIFMFQLLRGLSYCH  120 (288)
T ss_pred             hHHHHHHHHHhC-CCC--CEeeEEEEEc----CCCeEEEEEeCCCcCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHH
Confidence            456788888888 555  9999999998    566899999999779999886553 45899999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      +. |++||||||+|||++.++.  +||+|||.++...... ......+++.|+|||.+..     ...++.++|+||+|+
T Consensus       121 ~~-~ivH~dlkp~Nil~~~~~~--~kl~DfG~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-----~~~~~~~~DiwslG~  192 (288)
T cd07871         121 KR-KILHRDLKPQNLLINEKGE--LKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLG-----STEYSTPIDMWGVGC  192 (288)
T ss_pred             hC-CcccCCCCHHHEEECCCCC--EEECcCcceeeccCCCccccCceecccccChHHhcC-----CcccCcHHHHHHHHH
Confidence            96 9999999999999998876  9999999987653221 2223467889999999862     234677999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~  183 (202)
                      .      +..+..|.++|..
T Consensus       193 ~------l~~l~~g~~pf~~  206 (288)
T cd07871         193 I------LYEMATGRPMFPG  206 (288)
T ss_pred             H------HHHHHhCCCCCCC
Confidence            3      2244557777643

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.96  E-value=4.1e-28  Score=190.78  Aligned_cols=154  Identities=19%  Similarity=0.188  Sum_probs=121.9

Q ss_pred             HHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            7 TNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         7 ~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      ..|...+....+|  |||++++++|.    ...+.|+||||+ +++|..++...  +++++..+..++.|++.||.|||+
T Consensus        43 ~~e~~~l~~~~~~--~~i~~~~~~~~----~~~~~~lv~E~~~~g~L~~~i~~~--~~~~~~~~~~~~~qi~~~l~~lH~  114 (316)
T cd05620          43 MVEKRVLALAWEN--PFLTHLYCTFQ----TKEHLFFVMEFLNGGDLMFHIQDK--GRFDLYRATFYAAEIVCGLQFLHS  114 (316)
T ss_pred             HHHHHHHHhccCC--CCccCeeEEEE----eCCEEEEEECCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            3455555544344  49999999998    567999999999 89999988765  459999999999999999999999


Q ss_pred             hCCccccCCCCCceeeecCCcceeEEeeccccccccc-ccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHH
Q psy320           86 KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQE-CHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~-~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~  164 (202)
                      . |++||||||+||+++.++.  ++|+|||.++.... ........+++.|+|||.+..      ..++.++|+||+|+.
T Consensus       115 ~-~ivHrDlkp~Nil~~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~DiwslGvi  185 (316)
T cd05620         115 K-GIIYRDLKLDNVMLDRDGH--IKIADFGMCKENVFGDNRASTFCGTPDYIAPEILQG------LKYTFSVDWWSFGVL  185 (316)
T ss_pred             C-CeEecCCCHHHeEECCCCC--EEeCccCCCeecccCCCceeccCCCcCccCHHHHcC------CCCCcccchhhhHHH
Confidence            6 9999999999999998876  99999999875322 112224578999999999973      347789999999863


Q ss_pred             HHHHHHHHHHHhcCCCCCC
Q psy320          165 TTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~  183 (202)
                            +..+..|..+|..
T Consensus       186 ------l~el~~g~~Pf~~  198 (316)
T cd05620         186 ------LYEMLIGQSPFHG  198 (316)
T ss_pred             ------HHHHHhCCCCCCC
Confidence                  2244457777653

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>KOG0596|consensus

Probab=99.96  E-value=7.9e-28  Score=192.27  Aligned_cols=152  Identities=20%  Similarity=0.229  Sum_probs=126.4

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      +++|+..|.+|+.+.  +|++++|+-.    ...++|+||||=..+|...+.+... ..+.-.++.+..||+.|+++.|+
T Consensus       406 y~nEI~lL~KLkg~~--~IIqL~DYEv----~d~~lYmvmE~Gd~DL~kiL~k~~~-~~~~~~lk~ywkqML~aV~~IH~  478 (677)
T KOG0596|consen  406 YRNEIALLNKLKGHD--KIIQLYDYEV----TDGYLYMVMECGDIDLNKILKKKKS-IDPDWFLKFYWKQMLLAVKTIHQ  478 (677)
T ss_pred             HHHHHHHHHHhcCCc--eEEEEeeeec----cCceEEEEeecccccHHHHHHhccC-CCchHHHHHHHHHHHHHHHHHHH
Confidence            578999999998887  9999999988    4669999999889999999987652 34445899999999999999999


Q ss_pred             hCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC---CCCCCccchhhHHHHhhhhccC-----CCCCCCcc
Q psy320           86 KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ---SSSKTKSKIFCEILEQCRLNQD-----FRLDPRVD  157 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~---~~~~~~~~~ape~~~~~~~~~~-----~~~~~~~D  157 (202)
                      . ||||.||||.|+|+..+   ++||+|||+|.......+..   ..+||+.||+||.+..+.....     ...++++|
T Consensus       479 ~-gIVHSDLKPANFLlVkG---~LKLIDFGIA~aI~~DTTsI~kdsQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SD  554 (677)
T KOG0596|consen  479 H-GIVHSDLKPANFLLVKG---RLKLIDFGIANAIQPDTTSIVKDSQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSD  554 (677)
T ss_pred             h-ceeecCCCcccEEEEee---eEEeeeechhcccCccccceeeccccCcccccCHHHHhhccccccCCCcceeecCccc
Confidence            5 99999999999999763   49999999999887654433   5799999999999987765522     23567999


Q ss_pred             hhhHHH--HHHHH
Q psy320          158 PTSIKM--YTTFC  168 (202)
Q Consensus       158 iwsl~~--~~~~~  168 (202)
                      |||||+  |.|++
T Consensus       555 vWSLGCILYqMvY  567 (677)
T KOG0596|consen  555 VWSLGCILYQMVY  567 (677)
T ss_pred             hhhhhhHHHHHHh
Confidence            999965  44444

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.96  E-value=4.8e-28  Score=200.09  Aligned_cols=156  Identities=18%  Similarity=0.259  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHc--CCCCCCHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQ--KFQPAPLVVAKIIVNQILEGLN   81 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~--~~~~~~~~~~~~~~~qi~~~l~   81 (202)
                      .+.+|+..++.+ +||  ||++++++|.    .+...|+||||+ +++|.+++...  ....+++..+..++.|++.||.
T Consensus       111 ~~~~E~~~l~~l-~Hp--niv~~~~~~~----~~~~~~lv~E~~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~  183 (478)
T PTZ00267        111 YARSELHCLAAC-DHF--GIVKHFDDFK----SDDKLLLIMEYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALD  183 (478)
T ss_pred             HHHHHHHHHHhC-CCC--CEeEEEEEEE----ECCEEEEEEECCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence            455688888877 455  9999999998    466999999999 99999887643  2345899999999999999999


Q ss_pred             HHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC---CCCCCCCccchhhHHHHhhhhccCCCCCCCcch
Q psy320           82 HLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD---QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDP  158 (202)
Q Consensus        82 ~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Di  158 (202)
                      |+|+. +|+||||||+|||++.++.  +||+|||+++.......   .....||+.|+|||.+..      ..++.++|+
T Consensus       184 ~lH~~-~ivHrDlkp~NIll~~~~~--~kL~DFgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~Dv  254 (478)
T PTZ00267        184 EVHSR-KMMHRDLKSANIFLMPTGI--IKLGDFGFSKQYSDSVSLDVASSFCGTPYYLAPELWER------KRYSKKADM  254 (478)
T ss_pred             HHHhC-CEEECCcCHHhEEECCCCc--EEEEeCcCceecCCccccccccccCCCccccCHhHhCC------CCCCcHHhH
Confidence            99996 9999999999999998776  99999999987643221   224568999999999873      347889999


Q ss_pred             hhHHHHHHHHHHHHHHHhcCCCCC
Q psy320          159 TSIKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       159 wsl~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      ||+|+..+      .+..|..+|.
T Consensus       255 ~slG~~l~------el~tg~~Pf~  272 (478)
T PTZ00267        255 WSLGVILY------ELLTLHRPFK  272 (478)
T ss_pred             HHHHHHHH------HHHhCCCCCC
Confidence            99986322      3344655553

>KOG0666|consensus

Probab=99.96  E-value=1e-28  Score=185.66  Aligned_cols=164  Identities=20%  Similarity=0.207  Sum_probs=135.7

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcC---CCCCCHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQK---FQPAPLVVAKIIVNQILEGL   80 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~---~~~~~~~~~~~~~~qi~~~l   80 (202)
                      ..+++|+..++.+ +||  ||+.+..+|..   ....+++++||+..+|..+++-..   .+.+|...++.++.|++.|+
T Consensus        72 ~SAcREiaL~REl-~h~--nvi~Lv~Vfl~---~d~~v~l~fdYAEhDL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv  145 (438)
T KOG0666|consen   72 MSACREIALLREL-KHP--NVISLVKVFLS---HDKKVWLLFDYAEHDLWHIIKFHRASKAKQLPRSMVKSILWQILDGV  145 (438)
T ss_pred             HHHHHHHHHHHHh-cCC--cchhHHHHHhc---cCceEEEEehhhhhhHHHHHHHhccchhccCCHHHHHHHHHHHHhhh
Confidence            4678999999999 455  99999999984   367999999999999999997433   34589999999999999999


Q ss_pred             HHHHhhCCccccCCCCCceeeecCCc--ceeEEeecccccccccccCCC----CCCCCccchhhHHHHhhhhccCCCCCC
Q psy320           81 NHLHTKHNLVHTSIKPESIFFKADHV--YIMTLINIQQATTHQECHDQQ----SSSKTKSKIFCEILEQCRLNQDFRLDP  154 (202)
Q Consensus        81 ~~lh~~~~ivH~dl~p~nil~~~~~~--~~~~l~Dfg~a~~~~~~~~~~----~~~~~~~~~ape~~~~~~~~~~~~~~~  154 (202)
                      .|||++ =|+||||||.|||+..++.  ++|||+|+|+++.+.++..+.    ....|.+|+|||++.     +...|++
T Consensus       146 ~YLH~N-WvlHRDLKPaNIlvmgdgperG~VKIaDlGlaR~~~~plkpl~s~d~VVVTiWYRAPELLL-----Ga~hYT~  219 (438)
T KOG0666|consen  146 HYLHSN-WVLHRDLKPANILVMGDGPERGRVKIADLGLARLFNNPLKPLASLDPVVVTIWYRAPELLL-----GARHYTK  219 (438)
T ss_pred             HHHhhh-heeeccCCcceEEEeccCCccCeeEeecccHHHHhhccccccccCCceEEEEEecChHHhc-----ccccccc
Confidence            999997 8999999999999998843  459999999999987654443    346788999999998     3567899


Q ss_pred             CcchhhHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy320          155 RVDPTSIKMYTTFCEILEQCRLNHQDFRPDP  185 (202)
Q Consensus       155 ~~Diwsl~~~~~~~~~~~~~~~~~~~~~~~~  185 (202)
                      ++|+||+|+      +|..++.-.|-|.-..
T Consensus       220 AiDvWAiGC------IfaElLtl~PlF~g~E  244 (438)
T KOG0666|consen  220 AIDVWAIGC------IFAELLTLEPLFKGRE  244 (438)
T ss_pred             hhhhHHHHH------HHHHHHccCccccchh
Confidence            999999987      5556665666665443

>KOG0579|consensus

Probab=99.96  E-value=6.5e-29  Score=201.72  Aligned_cols=147  Identities=20%  Similarity=0.289  Sum_probs=124.2

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      +.-||.+|... +||  +|+++++.|.    ....+|+..||| ||-...++...+ +.+.++++..+++|++.||+|||
T Consensus        76 ylVEIeILa~C-dHP--~ivkLl~ayy----~enkLwiliEFC~GGAVDaimlEL~-r~LtE~QIqvvc~q~ldALn~LH  147 (1187)
T KOG0579|consen   76 YLVEIEILAEC-DHP--VIVKLLSAYY----FENKLWILIEFCGGGAVDAIMLELG-RVLTEDQIQVVCYQVLDALNWLH  147 (1187)
T ss_pred             hhhhhhhhhcC-CCh--HHHHHHHHHh----ccCceEEEEeecCCchHhHHHHHhc-cccchHHHHHHHHHHHHHHHHHh
Confidence            34567777776 455  9999999988    456999999999 788887777665 67999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC-CCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ-SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~-~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      ++ +|+|||||..|||+..+|.  ++|+|||++.........+ .+.|||+|||||+.. |....+.+|+-++||||+|+
T Consensus       148 s~-~iIHRDLKAGNiL~TldGd--irLADFGVSAKn~~t~qkRDsFIGTPYWMAPEVvm-CET~KD~PYDykaDiWSlGI  223 (1187)
T KOG0579|consen  148 SQ-NIIHRDLKAGNILLTLDGD--IRLADFGVSAKNKSTRQKRDSFIGTPYWMAPEVVM-CETFKDQPYDYKADIWSLGI  223 (1187)
T ss_pred             hc-chhhhhccccceEEEecCc--EeeecccccccchhHHhhhccccCCcccccchhee-eccccCCCchhhhhHHhhhh
Confidence            97 9999999999999999998  9999999998765443333 679999999999986 44445788999999999976


Q ss_pred             H
Q psy320          164 Y  164 (202)
Q Consensus       164 ~  164 (202)
                      -
T Consensus       224 T  224 (1187)
T KOG0579|consen  224 T  224 (1187)
T ss_pred             H
Confidence            3

>KOG4236|consensus

Probab=99.96  E-value=4e-29  Score=199.23  Aligned_cols=171  Identities=22%  Similarity=0.278  Sum_probs=144.5

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..++|+.+|+.+ .||  .||.+.-.|+    +...++.|||-+.|+..+.+....++++++...+.++.||+.||+|||
T Consensus       609 qlR~EVaILq~l-~HP--GiV~le~M~E----T~ervFVVMEKl~GDMLEMILSsEkgRL~er~TkFlvtQIL~ALr~LH  681 (888)
T KOG4236|consen  609 QLRNEVAILQNL-HHP--GIVNLECMFE----TPERVFVVMEKLHGDMLEMILSSEKGRLPERITKFLVTQILVALRYLH  681 (888)
T ss_pred             HHHHHHHHHHhc-CCC--CeeEEEEeec----CCceEEEEehhhcchHHHHHHHhhcccchHHHHHHHHHHHHHHHHHhh
Confidence            456799999999 555  9999999999    788999999999888777777778889999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCc-ceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHV-YIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~-~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      .+ +|+|+||||+|+|+.+... .++||||||.|+........+...||+.|+|||+++      +..|+...|+||.|+
T Consensus       682 ~k-nIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEksFRrsVVGTPAYLaPEVLr------nkGyNrSLDMWSVGV  754 (888)
T KOG4236|consen  682 FK-NIVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEKSFRRSVVGTPAYLAPEVLR------NKGYNRSLDMWSVGV  754 (888)
T ss_pred             hc-ceeeccCCchheeeccCCCCCceeeccccceeecchhhhhhhhcCCccccCHHHHh------hccccccccceeeeE
Confidence            97 9999999999999987643 359999999999987666666789999999999999      455888999999975


Q ss_pred             HHHHH-----------HHHHHHHhcCCCCCCCCCCCC
Q psy320          164 YTTFC-----------EILEQCRLNHQDFRPDPRVDP  189 (202)
Q Consensus       164 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~~  189 (202)
                      ..++.           ++-+|+..+-.-++|.+..+-
T Consensus       755 IiYVsLSGTFPFNEdEdIndQIQNAaFMyPp~PW~ei  791 (888)
T KOG4236|consen  755 IIYVSLSGTFPFNEDEDINDQIQNAAFMYPPNPWSEI  791 (888)
T ss_pred             EEEEEecccccCCCccchhHHhhccccccCCCchhhc
Confidence            33322           677777777777777776553

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.96  E-value=2.6e-28  Score=195.15  Aligned_cols=152  Identities=15%  Similarity=0.226  Sum_probs=121.1

Q ss_pred             HHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            7 TNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         7 ~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      .+|+.++..+ +|  ++|+++++.|.    .+...|+||||+ +++|.+++.+.  +.+++..++.++.|++.||.|||+
T Consensus        49 ~~e~~~l~~l-~~--~~iv~~~~~~~----~~~~~~lv~E~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~~L~~lH~  119 (360)
T cd05627          49 RAERDILVEA-DG--AWVVKMFYSFQ----DKRNLYLIMEFLPGGDMMTLLMKK--DTLSEEATQFYIAETVLAIDAIHQ  119 (360)
T ss_pred             HHHHHHHHhC-CC--CCEeeEEEEEE----cCCEEEEEEeCCCCccHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4566767666 44  49999999998    567999999999 99999998765  359999999999999999999999


Q ss_pred             hCCccccCCCCCceeeecCCcceeEEeeccccccccccc------------------------------------CCCCC
Q psy320           86 KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH------------------------------------DQQSS  129 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~------------------------------------~~~~~  129 (202)
                      . |++||||||+|||++.++.  ++|+|||++.......                                    .....
T Consensus       120 ~-givHrDLkp~NIli~~~~~--vkL~DfG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (360)
T cd05627         120 L-GFIHRDIKPDNLLLDAKGH--VKLSDFGLCTGLKKAHRTEFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYST  196 (360)
T ss_pred             C-CeEccCCCHHHEEECCCCC--EEEeeccCCcccccccccccccccccCCccccccccccccccccccccccccccccc
Confidence            6 9999999999999988776  9999999987542110                                    01124


Q ss_pred             CCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCCCC
Q psy320          130 SKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       130 ~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      .||+.|+|||++..      ..++.++|+||+|+..      ..+..|.++|.
T Consensus       197 ~gt~~Y~APE~~~~------~~~~~~~DiwSlGvil------yel~tG~~Pf~  237 (360)
T cd05627         197 VGTPDYIAPEVFMQ------TGYNKLCDWWSLGVIM------YEMLIGYPPFC  237 (360)
T ss_pred             CCCccccCHHHHcC------CCCCCcceecccccee------eecccCCCCCC
Confidence            68999999999873      3478899999998632      24444666654

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.96  E-value=2.4e-28  Score=192.75  Aligned_cols=153  Identities=18%  Similarity=0.158  Sum_probs=120.3

Q ss_pred             HHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            7 TNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         7 ~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      .+|+++++.+ +  ||||+++.++|.    .....|+||||+ +++|..++.+.  +.+++..++.++.|++.||.|||+
T Consensus        43 ~~e~~~l~~~-~--hp~i~~~~~~~~----~~~~~~lv~E~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~lH~  113 (325)
T cd05594          43 LTENRVLQNS-R--HPFLTALKYSFQ----THDRLCFVMEYANGGELFFHLSRE--RVFSEDRARFYGAEIVSALDYLHS  113 (325)
T ss_pred             HHHHHHHHhC-C--CCCCCceEEEEE----cCCEEEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHh
Confidence            3456666665 4  459999999998    566999999999 89999888665  359999999999999999999997


Q ss_pred             hCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHH
Q psy320           86 KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~  164 (202)
                      ..|++||||||+|||++.++.  ++|+|||+++...... ......+++.|+|||.+..      ..++.++|+||+|+.
T Consensus       114 ~~~ivHrDikp~NIll~~~~~--~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~DiwslG~i  185 (325)
T cd05594         114 EKNVVYRDLKLENLMLDKDGH--IKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLED------NDYGRAVDWWGLGVV  185 (325)
T ss_pred             cCCEEecCCCCCeEEECCCCC--EEEecCCCCeecCCCCcccccccCCcccCCHHHHcc------CCCCCccccccccce
Confidence            239999999999999998877  9999999987643222 2223568999999999873      337789999999863


Q ss_pred             HHHHHHHHHHHhcCCCCC
Q psy320          165 TTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~  182 (202)
                      .      ..+..|..+|.
T Consensus       186 l------~el~tG~~Pf~  197 (325)
T cd05594         186 M------YEMMCGRLPFY  197 (325)
T ss_pred             e------eeeccCCCCCC
Confidence            2      23444666654

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.96  E-value=9.5e-28  Score=190.21  Aligned_cols=145  Identities=16%  Similarity=0.183  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC-----------------------
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK-----------------------   60 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~-----------------------   60 (202)
                      ...+|+++++.+.+||  ||++++++|..   .....++||||+ +|+|.+++....                       
T Consensus        56 ~~~~E~~~l~~l~~h~--niv~~~~~~~~---~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (338)
T cd05102          56 ALMSELKILIHIGNHL--NVVNLLGACTK---PNGPLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQ  130 (338)
T ss_pred             HHHHHHHHHHHhccCc--ceeeEEeEecC---CCCceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhh
Confidence            3567888888885555  99999999873   344689999999 999999987532                       


Q ss_pred             -------------------------------------CCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeec
Q psy320           61 -------------------------------------FQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKA  103 (202)
Q Consensus        61 -------------------------------------~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~  103 (202)
                                                           ...+++..+..++.|++.||.|||++ |++||||||+|||++.
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~-~ivHrDiKp~Nil~~~  209 (338)
T cd05102         131 SRVDRRIEAGQASVLFSRFQPSTSGSTNPPQETDDLWKSPLTMEDLICYSFQVARGMEFLASR-KCIHRDLAARNILLSE  209 (338)
T ss_pred             hccccccccccCCccccccccccCcccccchhccccccCCCCHHHHHHHHHHHHHHHHHHHHC-CEECCCCccceEEEcC
Confidence                                                 12377788899999999999999996 9999999999999988


Q ss_pred             CCcceeEEeecccccccccccCC---CCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320          104 DHVYIMTLINIQQATTHQECHDQ---QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus       104 ~~~~~~~l~Dfg~a~~~~~~~~~---~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      ++.  ++|+|||+++........   ....++..|+|||.+..      ..++.++|+||+|+
T Consensus       210 ~~~--~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~sDiwslG~  264 (338)
T cd05102         210 NNV--VKICDFGLARDIYKDPDYVRKGSARLPLKWMAPESIFD------KVYTTQSDVWSFGV  264 (338)
T ss_pred             CCc--EEEeecccccccccCcchhcccCCCCCccccCcHHhhc------CCCCcccCHHHHHH
Confidence            776  999999999865322111   12345578999999973      34788999999986

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.96  E-value=1.1e-27  Score=185.06  Aligned_cols=155  Identities=19%  Similarity=0.212  Sum_probs=126.4

Q ss_pred             HHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            7 TNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         7 ~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      ..|+++++++ +||  ||+++.++|.    .+.+.|+||||+ +++|.+.+.......+++..+..++.|++.||.|||+
T Consensus        41 ~~E~~il~~l-~hp--~i~~~~~~~~----~~~~~~lv~e~~~g~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~  113 (277)
T cd05607          41 LLEKEILEKV-NSP--FIVNLAYAFE----SKTHLCLVMSLMNGGDLKYHIYNVGERGLEMERVIHYSAQITCGILHLHS  113 (277)
T ss_pred             HHHHHHHHhc-CCC--cEEEEEEEEe----cCCeEEEEEecCCCCCHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4578888888 555  9999999998    567999999999 9999988876655568999999999999999999999


Q ss_pred             hCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHH
Q psy320           86 KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYT  165 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~  165 (202)
                      . |++||||||+||+++.++.  ++|+|||.+.............++..|+|||.+...      .++.++|+||+|+. 
T Consensus       114 ~-~ivH~dikp~Nili~~~~~--~~l~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~------~~~~~~DvwslGv~-  183 (277)
T cd05607         114 M-DIVYRDMKPENVLLDDQGN--CRLSDLGLAVELKDGKTITQRAGTNGYMAPEILKEE------PYSYPVDWFAMGCS-  183 (277)
T ss_pred             C-CEEEccCChHhEEEcCCCC--EEEeeceeeeecCCCceeeccCCCCCccCHHHHccC------CCCCchhHHHHHHH-
Confidence            6 9999999999999998776  999999998876543333345688899999998733      37789999999863 


Q ss_pred             HHHHHHHHHHhcCCCCCC
Q psy320          166 TFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~  183 (202)
                           +..+..|..+|..
T Consensus       184 -----l~el~~g~~p~~~  196 (277)
T cd05607         184 -----IYEMVAGRTPFKD  196 (277)
T ss_pred             -----HHHHHhCCCCCCC
Confidence                 2244557777753

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>KOG4250|consensus

Probab=99.96  E-value=2.7e-28  Score=199.63  Aligned_cols=169  Identities=20%  Similarity=0.216  Sum_probs=139.6

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEec--CCceEEEEEEccc-cccHHHHHHHcC-CCCCCHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTG--INGTHVCTVTEIM-AECLCNYMIRQK-FQPAPLVVAKIIVNQILEG   79 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~--~~~~~~~lv~e~~-~~sL~~~~~~~~-~~~~~~~~~~~~~~qi~~~   79 (202)
                      ..-.+|+++|+++. |+  |||++.++=+...  ...+...+||||| +|||..++.+-. ..++++.....++..+..|
T Consensus        56 e~~~~EieilkKLn-h~--NIVk~f~iee~~~~~~~~~~~vlvmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~a  132 (732)
T KOG4250|consen   56 ERWCREIEILKKLN-HP--NIVKLFDIEETKFLGLVTRLPVLVMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSA  132 (732)
T ss_pred             HHHHHHHHHHHHcC-ch--hhhhhcccCCccccCcccccceEEEeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHH
Confidence            34467999999994 66  9999999866322  2256789999999 999999997544 4569999999999999999


Q ss_pred             HHHHHhhCCccccCCCCCceeeecCC--cceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcc
Q psy320           80 LNHLHTKHNLVHTSIKPESIFFKADH--VYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVD  157 (202)
Q Consensus        80 l~~lh~~~~ivH~dl~p~nil~~~~~--~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~D  157 (202)
                      |.|||+ +||+||||||.||++..+.  ....||+|||.|+.......-.+..||..|.+||++..     ...|+.-+|
T Consensus       133 l~~LrE-n~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~Arel~d~s~~~S~vGT~~YLhPel~E~-----q~~y~~tVD  206 (732)
T KOG4250|consen  133 LRHLRE-NGIVHRDLKPGNIVLQIGEDGQSIYKLTDFGAARELDDNSLFTSLVGTEEYLHPELYER-----QKKYTATVD  206 (732)
T ss_pred             HHHHHH-cCceeccCCCCcEEEeecCCCceEEeeecccccccCCCCCeeeeecCchhhcChHHHhh-----ccCcCceee
Confidence            999999 5999999999999987654  44489999999999876666667899999999999993     234677899


Q ss_pred             hhhHHHHHHHHHHHHHHHhcCCCCCCCCCC
Q psy320          158 PTSIKMYTTFCEILEQCRLNHQDFRPDPRV  187 (202)
Q Consensus       158 iwsl~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (202)
                      .||+|+      ++..|..|..||+|....
T Consensus       207 LWS~Gv------tlY~caTG~lPF~p~~~p  230 (732)
T KOG4250|consen  207 LWSFGV------TLYECATGELPFIPFGGP  230 (732)
T ss_pred             hhhhhh------HHHHHhccCCCCCcCCCc
Confidence            999997      455888899999986644

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.96  E-value=5.3e-28  Score=195.17  Aligned_cols=141  Identities=20%  Similarity=0.253  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ...+|+++++++ +||  ||++++++|.    .....|+|+|+++++|..++...  +++++..++.++.|++.||.|||
T Consensus       129 ~~~~E~~il~~l-~Hp--nIv~~~~~~~----~~~~~~lv~e~~~~~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~ylH  199 (391)
T PHA03212        129 GTATEAHILRAI-NHP--SIIQLKGTFT----YNKFTCLILPRYKTDLYCYLAAK--RNIAICDILAIERSVLRAIQYLH  199 (391)
T ss_pred             hhHHHHHHHHhC-CCC--CCCCEeEEEE----ECCeeEEEEecCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH
Confidence            456799999999 555  9999999998    46689999999988999888665  35899999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeeccccccccccc--CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH--DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~--~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      +. ||+||||||+|||++.++.  ++|+|||+|.......  ......+|+.|+|||++...      .++.++|+||+|
T Consensus       200 ~~-~IvHrDiKP~NIll~~~~~--vkL~DFG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~~DiwSlG  270 (391)
T PHA03212        200 EN-RIIHRDIKAENIFINHPGD--VCLGDFGAACFPVDINANKYYGWAGTIATNAPELLARD------PYGPAVDIWSAG  270 (391)
T ss_pred             hC-CcccCCCChHhEEEcCCCC--EEEEeCCcccccccccccccccccCccCCCChhhhcCC------CCCcHHHHHHHH
Confidence            96 9999999999999988776  9999999997543221  22245799999999998743      478899999998


Q ss_pred             H
Q psy320          163 M  163 (202)
Q Consensus       163 ~  163 (202)
                      +
T Consensus       271 v  271 (391)
T PHA03212        271 I  271 (391)
T ss_pred             H
Confidence            6

>KOG1290|consensus

Probab=99.96  E-value=3.2e-28  Score=191.97  Aligned_cols=102  Identities=33%  Similarity=0.594  Sum_probs=95.2

Q ss_pred             chHHHHHHHHHHHHhcCC--Cc---cceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHH
Q psy320            3 TNYATNLIKTLIEIQKHP--SD---KLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQIL   77 (202)
Q Consensus         3 ~~~~~~e~~~l~~l~~~~--h~---~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~   77 (202)
                      ++++.+||++|++++.+.  |+   +||+|++.|.+.|+++.++|+|+|++|.+|..++++...+++|...++.|++||+
T Consensus       118 tEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsGpNG~HVCMVfEvLGdnLLklI~~s~YrGlpl~~VK~I~~qvL  197 (590)
T KOG1290|consen  118 TEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSGPNGQHVCMVFEVLGDNLLKLIKYSNYRGLPLSCVKEICRQVL  197 (590)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceecCCCCcEEEEEehhhhhHHHHHHHHhCCCCCcHHHHHHHHHHHH
Confidence            567889999999998654  43   6999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCccccCCCCCceeeecC
Q psy320           78 EGLNHLHTKHNLVHTSIKPESIFFKAD  104 (202)
Q Consensus        78 ~~l~~lh~~~~ivH~dl~p~nil~~~~  104 (202)
                      .||.|||.+|||+|.||||+|||+-.+
T Consensus       198 ~GLdYLH~ecgIIHTDlKPENvLl~~~  224 (590)
T KOG1290|consen  198 TGLDYLHRECGIIHTDLKPENVLLCST  224 (590)
T ss_pred             HHHHHHHHhcCccccCCCcceeeeecc
Confidence            999999999999999999999999764

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=1.2e-27  Score=185.45  Aligned_cols=156  Identities=17%  Similarity=0.150  Sum_probs=127.3

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      +.+|+++++.+ +||  ||+++++.+.    .+...|+||||+ +++|.+.+.....+.+++..+..++.|++.||.|||
T Consensus        47 ~~~E~~~l~~l-~h~--~iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH  119 (285)
T cd05605          47 ALNEKQILEKV-NSR--FVVSLAYAYE----TKDALCLVLTLMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLH  119 (285)
T ss_pred             HHHHHHHHHhc-CCC--CEeeeeeeec----CCCeEEEEEeccCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            45688888888 555  9999999998    567999999999 899998887655456999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~  164 (202)
                      +. |++|+||+|+||+++.++.  ++|+|||.+.............++..|++||.+..      ..++.++|+||+|+.
T Consensus       120 ~~-~ivH~dlkp~Nil~~~~~~--~~l~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~Diws~G~~  190 (285)
T cd05605         120 RE-RIVYRDLKPENILLDDYGH--IRISDLGLAVEIPEGETIRGRVGTVGYMAPEVVKN------ERYTFSPDWWGLGCL  190 (285)
T ss_pred             HC-CcEecCCCHHHEEECCCCC--EEEeeCCCceecCCCCccccccCCCCccCcHHhcC------CCCCccccchhHHHH
Confidence            96 9999999999999988776  99999999887543333334578899999999873      346778999999863


Q ss_pred             HHHHHHHHHHHhcCCCCCC
Q psy320          165 TTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~  183 (202)
                      .+      .+..|..+|..
T Consensus       191 l~------el~~g~~pf~~  203 (285)
T cd05605         191 IY------EMIEGKSPFRQ  203 (285)
T ss_pred             HH------HHHHCCCCCCC
Confidence            22      44557777754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.96  E-value=8.9e-28  Score=189.38  Aligned_cols=153  Identities=16%  Similarity=0.103  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            7 TNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         7 ~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      ..|..++..+..  |++|+.++++|.    .....|+||||+ +++|.+.+...  +.+++..+..++.|++.||.|||+
T Consensus        48 ~~e~~~l~~~~~--~~~i~~~~~~~~----~~~~~~lv~E~~~~g~L~~~~~~~--~~~~~~~~~~~~~qi~~aL~~LH~  119 (323)
T cd05616          48 MVEKRVLALSGK--PPFLTQLHSCFQ----TMDRLYFVMEYVNGGDLMYQIQQV--GRFKEPHAVFYAAEIAIGLFFLHS  119 (323)
T ss_pred             HHHHHHHHhccC--CCeEeeEEEEEe----cCCEEEEEEcCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            345555555533  459999999998    567899999999 89999988765  349999999999999999999999


Q ss_pred             hCCccccCCCCCceeeecCCcceeEEeecccccccccc-cCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHH
Q psy320           86 KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQEC-HDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~-~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~  164 (202)
                      . |++||||||+|||++.++.  ++|+|||+++..... .......|++.|+|||.+...      .++.++|+||+|+.
T Consensus       120 ~-~ivHrDlkp~Nill~~~~~--~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~~DiwSlGvi  190 (323)
T cd05616         120 K-GIIYRDLKLDNVMLDSEGH--IKIADFGMCKENMWDGVTTKTFCGTPDYIAPEIIAYQ------PYGKSVDWWAFGVL  190 (323)
T ss_pred             C-CEEecCCCHHHeEECCCCc--EEEccCCCceecCCCCCccccCCCChhhcCHHHhcCC------CCCCccchhchhHH
Confidence            5 9999999999999998877  999999998764322 222345789999999999843      37889999999863


Q ss_pred             HHHHHHHHHHHhcCCCCC
Q psy320          165 TTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~  182 (202)
                      .+      .+..|..+|.
T Consensus       191 l~------elltg~~Pf~  202 (323)
T cd05616         191 LY------EMLAGQAPFE  202 (323)
T ss_pred             HH------HHHhCCCCCC
Confidence            22      3444666664

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.95  E-value=1.2e-27  Score=188.76  Aligned_cols=155  Identities=15%  Similarity=0.111  Sum_probs=122.4

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ...|++++..+..  |++|++++++|.    .....|+||||+ +++|.+++.+.  +.+++..++.++.|++.||.|||
T Consensus        47 ~~~e~~~l~~~~~--~~~i~~~~~~~~----~~~~~~lv~Ey~~~g~L~~~i~~~--~~l~~~~~~~i~~qi~~al~~lH  118 (323)
T cd05615          47 TMVEKRVLALQDK--PPFLTQLHSCFQ----TVDRLYFVMEYVNGGDLMYHIQQV--GKFKEPQAVFYAAEISVGLFFLH  118 (323)
T ss_pred             HHHHHHHHHhccC--CCchhheeeEEe----cCCEEEEEEcCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH
Confidence            3456666666633  348999999998    566899999999 89999998765  34999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      +. |++||||||+|||++.++.  ++|+|||+++...... ......+++.|+|||.+...      .++.++|+||+|+
T Consensus       119 ~~-~ivHrDikp~Nill~~~~~--ikL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~~DiwslGv  189 (323)
T cd05615         119 RR-GIIYRDLKLDNVMLDSEGH--IKIADFGMCKEHMVDGVTTRTFCGTPDYIAPEIIAYQ------PYGKSVDWWAYGV  189 (323)
T ss_pred             HC-CeeccCCCHHHeEECCCCC--EEEeccccccccCCCCccccCccCCccccCHHHHcCC------CCCCccchhhhHH
Confidence            96 9999999999999998877  9999999987643222 22345689999999998743      3778999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~  183 (202)
                      ..+      .+..|.++|..
T Consensus       190 il~------elltG~~pf~~  203 (323)
T cd05615         190 LLY------EMLAGQPPFDG  203 (323)
T ss_pred             HHH------HHHhCCCCCCC
Confidence            322      44446666643

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.95  E-value=1e-27  Score=189.73  Aligned_cols=160  Identities=18%  Similarity=0.191  Sum_probs=126.1

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecC-CceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGI-NGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~-~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+++++.+ +||  ||+++++++..... .....|+||||++++|.+++....  .+++..++.++.|++.||.|||
T Consensus        46 ~~~E~~~l~~l-~hp--niv~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~LH  120 (338)
T cd07859          46 ILREIKLLRLL-RHP--DIVEIKHIMLPPSRREFKDIYVVFELMESDLHQVIKAND--DLTPEHHQFFLYQLLRALKYIH  120 (338)
T ss_pred             HHHHHHHHHhC-CCC--CEeeecceEeccCCCCCceEEEEEecCCCCHHHHHHhcc--cCCHHHHHHHHHHHHHHHHHHH
Confidence            45788888888 455  99999999864321 234689999999889999887653  4999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC----CCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ----QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~----~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      +. |++||||||+|||++.++.  +||+|||.++........    ....+++.|+|||++....    ..++.++|+||
T Consensus       121 ~~-~ivH~dlkp~NIll~~~~~--~kL~Dfg~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~----~~~~~~~DvwS  193 (338)
T cd07859         121 TA-NVFHRDLKPKNILANADCK--LKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFF----SKYTPAIDIWS  193 (338)
T ss_pred             HC-CeecCCCCHHHeEECCCCc--EEEccCccccccccccCccccccCCCCCCCcCCHHHHhccc----cccCchhHHHH
Confidence            96 9999999999999998876  999999999865322111    2346889999999986321    34677999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCC
Q psy320          161 IKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       161 l~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +|+.      +..+..|.++|..
T Consensus       194 lGvv------l~el~tg~~pf~~  210 (338)
T cd07859         194 IGCI------FAEVLTGKPLFPG  210 (338)
T ss_pred             HHHH------HHHHHcCCCCCCC
Confidence            9973      3355568887754

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>KOG0612|consensus

Probab=99.95  E-value=1.4e-28  Score=209.56  Aligned_cols=137  Identities=18%  Similarity=0.219  Sum_probs=121.7

Q ss_pred             ccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCcee
Q psy320           22 DKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIF  100 (202)
Q Consensus        22 ~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil  100 (202)
                      +=|+.++-+|+    +..++|+||||| ||+|-.++.+.+  ++|+..++++...|+.||.-+|+ +|+|||||||+|||
T Consensus       135 ~Wiv~LhyAFQ----D~~~LYlVMdY~pGGDlltLlSk~~--~~pE~~ArFY~aEiVlAldslH~-mgyVHRDiKPDNvL  207 (1317)
T KOG0612|consen  135 EWIVQLHYAFQ----DERYLYLVMDYMPGGDLLTLLSKFD--RLPEDWARFYTAEIVLALDSLHS-MGYVHRDIKPDNVL  207 (1317)
T ss_pred             HHHHHHHHHhc----CccceEEEEecccCchHHHHHhhcC--CChHHHHHHHHHHHHHHHHHHHh-ccceeccCCcceeE
Confidence            37999999999    688999999999 999999998886  69999999999999999999999 59999999999999


Q ss_pred             eecCCcceeEEeecccccccccccCCC--CCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH--HHHHH
Q psy320          101 FKADHVYIMTLINIQQATTHQECHDQQ--SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM--YTTFC  168 (202)
Q Consensus       101 ~~~~~~~~~~l~Dfg~a~~~~~~~~~~--~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~--~~~~~  168 (202)
                      ++..|.  +||+|||.|-.+...|...  ...|||-|++||++...... ...|++.+|+||+|+  |.|++
T Consensus       208 ld~~GH--ikLADFGsClkm~~dG~V~s~~aVGTPDYISPEvLqs~~~~-~g~yG~ecDwWSlGV~~YEMly  276 (1317)
T KOG0612|consen  208 LDKSGH--IKLADFGSCLKMDADGTVRSSVAVGTPDYISPEVLQSQGDG-KGEYGRECDWWSLGVFMYEMLY  276 (1317)
T ss_pred             ecccCc--EeeccchhHHhcCCCCcEEeccccCCCCccCHHHHHhhcCC-ccccCCccchhhhHHHHHHHHc
Confidence            999998  9999999999998777665  46899999999999866532 356889999999975  55555

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.95  E-value=1e-27  Score=188.71  Aligned_cols=154  Identities=18%  Similarity=0.186  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            7 TNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         7 ~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      .+|+++++.+.+||  ||++++++|.    .....|+||||+ +++|...+.+.  +++++..+..++.|++.||.|||+
T Consensus        43 ~~e~~il~~~~~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~~--~~l~~~~~~~~~~qi~~~l~~LH~  114 (318)
T cd05570          43 MTEKRVLALAGKHP--FLTQLHSCFQ----TKDRLFFVMEYVNGGDLMFHIQRS--GRFDEPRARFYAAEIVLGLQFLHE  114 (318)
T ss_pred             HHHHHHHHhccCCC--CccceeeEEE----cCCEEEEEEcCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHh
Confidence            45666776664455  9999999998    567999999999 99999888765  359999999999999999999999


Q ss_pred             hCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHH
Q psy320           86 KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~  164 (202)
                      . |++|+||||+||+++.++.  ++|+|||+++...... ......++..|+|||.+..      ..++.++|+||+|+.
T Consensus       115 ~-~ivH~dlkp~Nill~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~------~~~~~~~DiwslGvi  185 (318)
T cd05570         115 R-GIIYRDLKLDNVLLDSEGH--IKIADFGMCKEGILGGVTTSTFCGTPDYIAPEILSY------QPYGPAVDWWALGVL  185 (318)
T ss_pred             C-CeEccCCCHHHeEECCCCc--EEecccCCCeecCcCCCcccceecCccccCHHHhcC------CCCCcchhhhhHHHH
Confidence            6 9999999999999998876  9999999987532222 2223468899999999973      347789999999863


Q ss_pred             HHHHHHHHHHHhcCCCCCC
Q psy320          165 TTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~  183 (202)
                      .      ..+..|..+|..
T Consensus       186 l------~~l~~G~~pf~~  198 (318)
T cd05570         186 L------YEMLAGQSPFEG  198 (318)
T ss_pred             H------HHHhhCCCCCCC
Confidence            2      244457777653

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.95  E-value=1.2e-27  Score=188.63  Aligned_cols=154  Identities=16%  Similarity=0.104  Sum_probs=121.9

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ...|++++..+. | |++|+.++++|.    .....|+||||+ +++|.+++...  +.+++..+..++.|++.||.|||
T Consensus        47 ~~~e~~~l~~~~-~-~~~i~~~~~~~~----~~~~~~lv~E~~~~g~L~~~~~~~--~~~~~~~~~~~~~qi~~al~~lH  118 (324)
T cd05587          47 TMVEKRVLALPG-K-PPFLTQLHSCFQ----TMDRLYFVMEYVNGGDLMYHIQQV--GKFKEPHAVFYAAEIAIGLFFLH  118 (324)
T ss_pred             HHHHHHHHHhcC-C-CCceeeeEEEEE----cCCEEEEEEcCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH
Confidence            345666666663 3 237899999998    566899999999 99999988765  35899999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeeccccccccc-ccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQE-CHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~-~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      ++ |++||||||+|||++.++.  ++|+|||++..... ........+++.|+|||.+...      .++.++|+||+|+
T Consensus       119 ~~-~ivH~dlkp~Nill~~~~~--~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~~DiwslGv  189 (324)
T cd05587         119 SK-GIIYRDLKLDNVMLDAEGH--IKIADFGMCKENIFGGKTTRTFCGTPDYIAPEIIAYQ------PYGKSVDWWAFGV  189 (324)
T ss_pred             HC-CeEecCCCHHHeEEcCCCC--EEEeecCcceecCCCCCceeeecCCccccChhhhcCC------CCCcccchhhhHH
Confidence            96 9999999999999998876  99999999875422 2222345789999999999843      3778999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~  182 (202)
                      ..+      .+..|..+|.
T Consensus       190 il~------elltG~~pf~  202 (324)
T cd05587         190 LLY------EMLAGQPPFD  202 (324)
T ss_pred             HHH------HHHhCCCCCC
Confidence            322      4445776664

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.95  E-value=2.1e-27  Score=183.68  Aligned_cols=157  Identities=22%  Similarity=0.272  Sum_probs=125.4

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK--FQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~--~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +..|+++++.+ +|+  ||+++.++|.    .+...|+||||+ +++|...+....  ...+++..+..++.|++.||.|
T Consensus        40 ~~~E~~il~~l-~~~--~i~~~~~~~~----~~~~~~lv~e~~~~g~L~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~  112 (280)
T cd05608          40 AMVEKRILAKV-HSR--FIVSLAYAFQ----TKTDLCLVMTIMNGGDLRYHIYNVDEENPGFPEPRACFYTAQIISGLEH  112 (280)
T ss_pred             HHHHHHHHHhC-CCC--cEeeeeEEEc----CCCeEEEEEeCCCCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHH
Confidence            34678888888 455  9999999998    566899999999 999988775422  2458999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC-CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD-QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~-~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      ||+. |++||||||+||+++.++.  ++|+|||.+........ .....+++.|+|||.+...      .++.++|+||+
T Consensus       113 lH~~-~i~H~dlkp~Nili~~~~~--~~l~dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~------~~~~~~Dvwsl  183 (280)
T cd05608         113 LHQR-RIIYRDLKPENVLLDNDGN--VRISDLGLAVELKDGQSKTKGYAGTPGFMAPELLQGE------EYDFSVDYFAL  183 (280)
T ss_pred             HHHC-CcccCCCCHHHEEECCCCC--EEEeeCccceecCCCCccccccCCCcCccCHHHhcCC------CCCccccHHHH
Confidence            9996 9999999999999988776  99999999976543222 2234688999999999843      37789999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCC
Q psy320          162 KMYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      |+.      +..+..|..+|...
T Consensus       184 G~i------l~el~~g~~pf~~~  200 (280)
T cd05608         184 GVT------LYEMIAARGPFRAR  200 (280)
T ss_pred             HHH------HHHHHhCCCCCCCC
Confidence            873      22555588777653

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.95  E-value=1.7e-27  Score=194.97  Aligned_cols=164  Identities=16%  Similarity=0.227  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEec----CCceEEEEEEccccccHHHHHHHc--CCCCCCHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTG----INGTHVCTVTEIMAECLCNYMIRQ--KFQPAPLVVAKIIVNQILE   78 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~----~~~~~~~lv~e~~~~sL~~~~~~~--~~~~~~~~~~~~~~~qi~~   78 (202)
                      ...+|+.+++.+ +||  ||++++++|....    .....+++||||++++|.+++...  ....+++..++.++.|++.
T Consensus       105 ~~~~Ei~il~~l-~h~--niv~l~~~~~~~~~~~~~~~~~l~lvmE~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~  181 (440)
T PTZ00036        105 YKNRELLIMKNL-NHI--NIIFLKDYYYTECFKKNEKNIFLNVVMEFIPQTVHKYMKHYARNNHALPLFLVKLYSYQLCR  181 (440)
T ss_pred             hHHHHHHHHHhc-CCC--CCcceeeeEeecccccCCCceEEEEEEecCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Confidence            445789999888 455  9999999875421    123468899999988888877542  2356999999999999999


Q ss_pred             HHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcch
Q psy320           79 GLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDP  158 (202)
Q Consensus        79 ~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Di  158 (202)
                      ||.|||+. ||+||||||+|||++.++. .+||+|||+|+............+++.|+|||++..     ...++.++|+
T Consensus       182 gL~yLH~~-~IiHrDLKp~NILl~~~~~-~vkL~DFGla~~~~~~~~~~~~~~t~~y~aPE~~~~-----~~~~~~~~Di  254 (440)
T PTZ00036        182 ALAYIHSK-FICHRDLKPQNLLIDPNTH-TLKLCDFGSAKNLLAGQRSVSYICSRFYRAPELMLG-----ATNYTTHIDL  254 (440)
T ss_pred             HHHHHHHC-CEecCCcCHHHEEEcCCCC-ceeeeccccchhccCCCCcccCCCCcCccCHHHhcC-----CCCCCcHHHH
Confidence            99999996 9999999999999986542 399999999987654333334578899999999862     2347789999


Q ss_pred             hhHHHHHHHHHHHHHHHhcCCCCCCC
Q psy320          159 TSIKMYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       159 wsl~~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      ||+|+.      +..+..|.++|...
T Consensus       255 wSlGvi------l~elltG~~pf~~~  274 (440)
T PTZ00036        255 WSLGCI------IAEMILGYPIFSGQ  274 (440)
T ss_pred             HHHHHH------HHHHHhCCCCCCCC
Confidence            999863      22455577777543

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.95  E-value=1.1e-27  Score=188.72  Aligned_cols=142  Identities=17%  Similarity=0.156  Sum_probs=115.4

Q ss_pred             CccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCce
Q psy320           21 SDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESI   99 (202)
Q Consensus        21 h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~ni   99 (202)
                      ||||++++++|.    .....|+||||+ +++|...+.+.  +.+++..+..++.|++.||.|||+. |++||||||+||
T Consensus        55 h~~iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~L~~lH~~-~ivH~Dlkp~NI  127 (321)
T cd05603          55 HPFLVGLHYSFQ----TAEKLYFVLDYVNGGELFFHLQRE--RCFLEPRARFYAAEVASAIGYLHSL-NIIYRDLKPENI  127 (321)
T ss_pred             CCCccceeeEEE----cCCEEEEEEcCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeEeccCCHHHe
Confidence            559999999998    567999999999 89998888664  4589999999999999999999995 999999999999


Q ss_pred             eeecCCcceeEEeeccccccccc-ccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHhcC
Q psy320          100 FFKADHVYIMTLINIQQATTHQE-CHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLNH  178 (202)
Q Consensus       100 l~~~~~~~~~~l~Dfg~a~~~~~-~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~~~  178 (202)
                      +++.++.  +||+|||+++.... ........+++.|+|||.+..      ..++.++|+||+|+..      ..+..|.
T Consensus       128 ll~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~DiwslG~il------~el~~g~  193 (321)
T cd05603         128 LLDSQGH--VVLTDFGLCKEGVEPEETTSTFCGTPEYLAPEVLRK------EPYDRTVDWWCLGAVL------YEMLYGL  193 (321)
T ss_pred             EECCCCC--EEEccCCCCccCCCCCCccccccCCcccCCHHHhcC------CCCCCcCcccccchhh------hhhhcCC
Confidence            9998876  99999999876422 222334578999999999873      3477899999998632      2444566


Q ss_pred             CCCCC
Q psy320          179 QDFRP  183 (202)
Q Consensus       179 ~~~~~  183 (202)
                      ++|..
T Consensus       194 ~pf~~  198 (321)
T cd05603         194 PPFYS  198 (321)
T ss_pred             CCCCC
Confidence            66643

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>KOG0586|consensus

Probab=99.95  E-value=2.1e-28  Score=197.45  Aligned_cols=153  Identities=18%  Similarity=0.239  Sum_probs=131.9

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|++++..+ +||  ||++++.+..    ....+|+||||+ ++.+++++.+.+  +..+..++.++.|++.|++|||
T Consensus       102 ~~rev~imk~l-~HP--nIvkl~~v~~----t~~~lylV~eya~~ge~~~yl~~~g--r~~e~~ar~~F~q~vsaveYcH  172 (596)
T KOG0586|consen  102 LGREVDIMKSL-NHP--NIVKLFSVIE----TEATLYLVMEYASGGELFDYLVKHG--RMKEKEARAKFRQIVSAVEYCH  172 (596)
T ss_pred             HHHHHHHHHhc-CCc--ceeeeeeeee----ecceeEEEEEeccCchhHHHHHhcc--cchhhhhhhhhHHHHHHHHHHh
Confidence            56788888888 565  9999999999    678999999999 999999999885  4888999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCC-CCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRL-DPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~-~~~~Diwsl~~  163 (202)
                      ++ +|||||||.+|||++.+.+  +||+|||++..+.........+|++.|.|||++.+..      | ++.+|+||+|.
T Consensus       173 ~k-~ivHrdLk~eNilL~~~mn--ikIaDfgfS~~~~~~~~lqt~cgsppyAaPEl~~g~~------y~gpe~D~Wslgv  243 (596)
T KOG0586|consen  173 SK-NIVHRDLKAENILLDENMN--IKIADFGFSTFFDYGLMLQTFCGSPPYAAPELFNGKK------YDGPEVDIWSLGV  243 (596)
T ss_pred             hc-ceeccccchhhcccccccc--eeeeccccceeecccccccccCCCCCccChHhhcCcc------cCCcceehhhhhh
Confidence            97 9999999999999999888  9999999999998666777899999999999999554      5 45999999976


Q ss_pred             HHHHHHHHHHHHhcCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~  182 (202)
                      ..+      .+..|-.+|.
T Consensus       244 vly------~LV~GsLPFD  256 (596)
T KOG0586|consen  244 VLY------ALVEGSLPFD  256 (596)
T ss_pred             hhe------eeeecccccC
Confidence            433      3444555554

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=5.5e-28  Score=192.31  Aligned_cols=154  Identities=22%  Similarity=0.293  Sum_probs=125.7

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|++++..+ +|  +||++++++|.    .+.+.|+||||+ +++|.+++.+.  +.+++..++.++.|++.||.|||
T Consensus        48 ~~~e~~~l~~~-~~--~~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~~LH  118 (350)
T cd05573          48 VRAERDILADA-DS--PWIVKLYYSFQ----DEEHLYLVMEYMPGGDLMNLLIRK--DVFPEETARFYIAELVLALDSVH  118 (350)
T ss_pred             HHHHHHHHHhc-CC--CCccchhhhee----cCCeEEEEEcCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH
Confidence            45677777777 44  59999999998    567999999999 99999999876  45999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeeccccccccccc------------------------------CCCCCCCCcc
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH------------------------------DQQSSSKTKS  134 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~------------------------------~~~~~~~~~~  134 (202)
                      +. |++||||||+||+++.++.  ++|+|||.+.......                              ......+++.
T Consensus       119 ~~-giiH~Dlkp~NIll~~~~~--~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  195 (350)
T cd05573         119 KL-GFIHRDIKPDNILIDADGH--IKLADFGLCKKMNKAKDREYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPD  195 (350)
T ss_pred             HC-CeeccCCCHHHeEECCCCC--EEeecCCCCccCcccCcccccccccccccccccccccccccccccccccccccCcc
Confidence            95 9999999999999998877  9999999998764332                              1123468999


Q ss_pred             chhhHHHHhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCC
Q psy320          135 KIFCEILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       135 ~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      |+|||.+...      .++.++|+||+|+.      +..+..|..+|..
T Consensus       196 y~aPE~~~~~------~~~~~~DiwSlG~i------l~ell~g~~Pf~~  232 (350)
T cd05573         196 YIAPEVLRGT------PYGLECDWWSLGVI------LYEMLYGFPPFYS  232 (350)
T ss_pred             ccCHHHHcCC------CCCCceeeEecchh------hhhhccCCCCCCC
Confidence            9999999843      47889999999863      2245557666654

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.95  E-value=1.7e-27  Score=187.25  Aligned_cols=154  Identities=20%  Similarity=0.186  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            7 TNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         7 ~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      ..|..++....+||  ||+++++++.    +....++||||+ +++|.+++...  .++++..+..++.|++.||.|||+
T Consensus        43 ~~e~~~l~~~~~hp--~iv~~~~~~~----~~~~~~lv~ey~~~g~L~~~l~~~--~~~~~~~~~~~~~qi~~al~~LH~  114 (316)
T cd05619          43 MVEKRVLSLAWEHP--FLTHLYCTFQ----TKENLFFVMEYLNGGDLMFHIQSC--HKFDLPRATFYAAEIICGLQFLHS  114 (316)
T ss_pred             HHHHHHHHhccCCC--cCcceEEEEE----eCCEEEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHh
Confidence            34555555543455  9999999998    466899999999 99999998764  358999999999999999999999


Q ss_pred             hCCccccCCCCCceeeecCCcceeEEeecccccccccc-cCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHH
Q psy320           86 KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQEC-HDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~-~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~  164 (202)
                      . |++||||||+|||++.++.  ++|+|||.+...... .......++..|+|||.+..      ..++.++|+||+|+.
T Consensus       115 ~-~ivHrdikp~Nil~~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~DvwslG~i  185 (316)
T cd05619         115 K-GIVYRDLKLDNILLDTDGH--IKIADFGMCKENMLGDAKTCTFCGTPDYIAPEILLG------QKYNTSVDWWSFGVL  185 (316)
T ss_pred             C-CeEeCCCCHHHEEECCCCC--EEEccCCcceECCCCCCceeeecCCccccCHHHHcC------CCCCchhhhhhHHHH
Confidence            6 9999999999999998876  999999998754221 22224568899999999873      347789999999863


Q ss_pred             HHHHHHHHHHHhcCCCCCC
Q psy320          165 TTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~  183 (202)
                      .+      .+..|..+|..
T Consensus       186 l~------el~~G~~pf~~  198 (316)
T cd05619         186 LY------EMLIGQSPFHG  198 (316)
T ss_pred             HH------HHHhCCCCCCC
Confidence            22      44457666643

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.95  E-value=3.6e-28  Score=191.16  Aligned_cols=153  Identities=16%  Similarity=0.205  Sum_probs=122.7

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+++++++ +||  ||++++++|.    .....|+||||+ +++|.+++.+.  ..+++..++.++.|++.||.|||
T Consensus        45 ~~~E~~~l~~l-~h~--niv~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~~l~~lH  115 (318)
T cd05582          45 TKMERDILAEV-NHP--FIVKLHYAFQ----TEGKLYLILDFLRGGDLFTRLSKE--VMFTEEDVKFYLAELALALDHLH  115 (318)
T ss_pred             HHHHHHHHHhC-CCC--CcccEEEEEE----cCCEEEEEEcCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH
Confidence            34577777777 455  9999999998    566999999999 89999998765  34999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccc-cCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQEC-HDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~-~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      +. |++||||||+||+++.++.  ++|+|||.+...... .......+++.|++||.+..      ..++.++|+||+|+
T Consensus       116 ~~-~i~H~dlkp~Nil~~~~~~--~kL~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~------~~~~~~~DiwslG~  186 (318)
T cd05582         116 SL-GIIYRDLKPENILLDEEGH--IKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNR------RGHTQSADWWSFGV  186 (318)
T ss_pred             HC-CEecCCCCHHHeEECCCCc--EEEeeccCCcccCCCCCceecccCChhhcCHHHHcC------CCCCCccceeccce
Confidence            95 9999999999999988776  999999998865432 22224578899999999873      33677999999985


Q ss_pred             HHHHHHHHHHHHhcCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~  182 (202)
                      .      +..+..|..+|.
T Consensus       187 i------l~el~tg~~p~~  199 (318)
T cd05582         187 L------MFEMLTGSLPFQ  199 (318)
T ss_pred             E------eeeeccCCCCCC
Confidence            2      223344655554

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.95  E-value=2.4e-27  Score=187.53  Aligned_cols=154  Identities=18%  Similarity=0.211  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++++ +||  ||+++++++.    .....++||||+ +++|.+++....  .+++..+..++.|++.||.||
T Consensus        49 ~~~~E~~~l~~l-~h~--~iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~i~~~l~~l  119 (331)
T cd06649          49 QIIRELQVLHEC-NSP--YIVGFYGAFY----SDGEISICMEHMDGGSLDQVLKEAK--RIPEEILGKVSIAVLRGLAYL  119 (331)
T ss_pred             HHHHHHHHHHHC-CCC--CCCeEEEEEE----ECCEEEEEeecCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHH
Confidence            456788888888 455  9999999998    456899999999 899999997653  489999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |++.+++|+||||+||+++.++.  ++|+|||.+...... ......++..|+|||.+..      ..++.++|+||+|+
T Consensus       120 H~~~~ivH~dlkp~Nil~~~~~~--~kl~Dfg~~~~~~~~-~~~~~~g~~~y~aPE~~~~------~~~~~~~DiwslG~  190 (331)
T cd06649         120 REKHQIMHRDVKPSNILVNSRGE--IKLCDFGVSGQLIDS-MANSFVGTRSYMSPERLQG------THYSVQSDIWSMGL  190 (331)
T ss_pred             hhcCCEEcCCCChhhEEEcCCCc--EEEccCccccccccc-ccccCCCCcCcCCHhHhcC------CCCCchHhHHHHHH
Confidence            98546999999999999998877  999999998765422 2224568899999999873      34778999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~  182 (202)
                      ..      ..+..|..+|.
T Consensus       191 il------~el~tg~~p~~  203 (331)
T cd06649         191 SL------VELAIGRYPIP  203 (331)
T ss_pred             HH------HHHHhCCCCCC
Confidence            32      24455777764

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.95  E-value=1.5e-27  Score=188.15  Aligned_cols=142  Identities=19%  Similarity=0.173  Sum_probs=115.5

Q ss_pred             CCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCc
Q psy320           20 PSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPES   98 (202)
Q Consensus        20 ~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~n   98 (202)
                      .|+||++++++|.    .....|+||||+ +++|.+++...  +.+++..++.++.|++.||.|||+. |++||||||+|
T Consensus        54 ~h~~Iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~qi~~~L~~lH~~-giiHrDlkp~N  126 (325)
T cd05602          54 KHPFLVGLHFSFQ----TADKLYFVLDYINGGELFYHLQRE--RCFLEPRARFYAAEIASALGYLHSL-NIVYRDLKPEN  126 (325)
T ss_pred             CCCCCCceeEEEE----cCCeEEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeEecCCCHHH
Confidence            3559999999998    567899999999 89999998765  4589999999999999999999996 99999999999


Q ss_pred             eeeecCCcceeEEeeccccccccc-ccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHhc
Q psy320           99 IFFKADHVYIMTLINIQQATTHQE-CHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLN  177 (202)
Q Consensus        99 il~~~~~~~~~~l~Dfg~a~~~~~-~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~~  177 (202)
                      ||++.++.  ++|+|||+++.... ........+++.|+|||.+..      ..++.++|+||+|+..+      .+..|
T Consensus       127 ili~~~~~--~kl~DfG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~DiwslG~il~------el~~g  192 (325)
T cd05602         127 ILLDSQGH--IVLTDFGLCKENIEHNGTTSTFCGTPEYLAPEVLHK------QPYDRTVDWWCLGAVLY------EMLYG  192 (325)
T ss_pred             eEECCCCC--EEEccCCCCcccccCCCCcccccCCccccCHHHHcC------CCCCCccccccccHHHH------HHhcC
Confidence            99988776  99999999876432 222334578999999999874      34778999999986322      44446


Q ss_pred             CCCCC
Q psy320          178 HQDFR  182 (202)
Q Consensus       178 ~~~~~  182 (202)
                      .++|.
T Consensus       193 ~~pf~  197 (325)
T cd05602         193 LPPFY  197 (325)
T ss_pred             CCCCC
Confidence            66654

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.95  E-value=5.2e-28  Score=191.18  Aligned_cols=160  Identities=16%  Similarity=0.145  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+.+++.+ +|+  ||+++++++.    .....|+||||+ +++|.+++.+.. +.+++..+..++.|++.||.|||
T Consensus        48 ~~~e~~i~~~~-~~~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~-~~l~~~~~~~~~~qi~~aL~~lH  119 (330)
T cd05601          48 FEEERDILSIS-NSP--WIPQLQYAFQ----DKDNLYLVMEYQPGGDLLSLLNRYE-DQFDEDMAQFYLAELVLAIHSVH  119 (330)
T ss_pred             HHHHHHHHHhC-CCC--CCcceeeEEe----cCCeEEEEECCCCCCCHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH
Confidence            44566666665 454  9999999998    567899999999 999999997753 45999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC--CCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ--QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~--~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      +. |++||||||+|||++.++.  ++|+|||.+.........  ....+++.|+|||.+......+...++.++|+||+|
T Consensus       120 ~~-~i~H~Dlkp~NIll~~~~~--~kL~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG  196 (330)
T cd05601         120 QM-GYVHRDIKPENVLIDRTGH--IKLADFGSAARLTANKMVNSKLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLG  196 (330)
T ss_pred             HC-CeEcccCchHheEECCCCC--EEeccCCCCeECCCCCceeeecccCCccccCHHHhccccccccCCCCCcceeeccc
Confidence            96 9999999999999998877  999999999876433222  234688999999998754332234567899999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +..      ..+..|..+|.
T Consensus       197 ~il------~el~~g~~Pf~  210 (330)
T cd05601         197 VIA------YEMIYGRSPFH  210 (330)
T ss_pred             cee------eeeccCCCCCC
Confidence            632      24444666654

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.95  E-value=1.2e-27  Score=188.87  Aligned_cols=141  Identities=18%  Similarity=0.193  Sum_probs=114.5

Q ss_pred             CccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCce
Q psy320           21 SDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESI   99 (202)
Q Consensus        21 h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~ni   99 (202)
                      ||||++++++|.    .....|+||||+ +++|...+.+.  +.+++..+..++.|++.||.|||+. |++||||||+||
T Consensus        55 hp~iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~al~~lH~~-givH~Dlkp~NI  127 (325)
T cd05604          55 HPFLVGLHYSFQ----TTEKLYFVLDFVNGGELFFHLQRE--RSFPEPRARFYAAEIASALGYLHSI-NIVYRDLKPENI  127 (325)
T ss_pred             CCCCccEEEEEe----cCCEEEEEEcCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeeecCCCHHHe
Confidence            559999999998    567999999999 89998888765  4599999999999999999999996 999999999999


Q ss_pred             eeecCCcceeEEeeccccccccc-ccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHhcC
Q psy320          100 FFKADHVYIMTLINIQQATTHQE-CHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLNH  178 (202)
Q Consensus       100 l~~~~~~~~~~l~Dfg~a~~~~~-~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~~~  178 (202)
                      |++.++.  ++|+|||+++.... ........+++.|+|||.+..      ..++.++|+||+|+..+      .+..|.
T Consensus       128 ll~~~~~--~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~DvwslG~il~------el~~G~  193 (325)
T cd05604         128 LLDSQGH--VVLTDFGLCKEGIAQSDTTTTFCGTPEYLAPEVIRK------QPYDNTVDWWCLGAVLY------EMLYGL  193 (325)
T ss_pred             EECCCCC--EEEeecCCcccCCCCCCCcccccCChhhCCHHHHcC------CCCCCcCccccccceeh------hhhcCC
Confidence            9998877  99999999876432 222234568999999999874      33778999999986322      334465


Q ss_pred             CCCC
Q psy320          179 QDFR  182 (202)
Q Consensus       179 ~~~~  182 (202)
                      ++|.
T Consensus       194 ~pf~  197 (325)
T cd05604         194 PPFY  197 (325)
T ss_pred             CCCC
Confidence            5554

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>KOG0577|consensus

Probab=99.95  E-value=8.4e-29  Score=199.54  Aligned_cols=141  Identities=21%  Similarity=0.271  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      -.+|++.|+++ +||  |++.+.++|.    .....|+|||||-||-.+++.-.. +++.+..+..++.+.+.||.|||+
T Consensus        73 IlKEVrFL~~l-~HP--ntieYkgCyL----re~TaWLVMEYClGSAsDlleVhk-KplqEvEIAAi~~gaL~gLaYLHS  144 (948)
T KOG0577|consen   73 ILKEVRFLRQL-RHP--NTIEYKGCYL----REHTAWLVMEYCLGSASDLLEVHK-KPLQEVEIAAITHGALQGLAYLHS  144 (948)
T ss_pred             HHHHHHHHHhc-cCC--Ccccccceee----ccchHHHHHHHHhccHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHH
Confidence            35688888888 455  9999999999    567899999999777777776554 569999999999999999999999


Q ss_pred             hCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           86 KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                       ++-+|||||..|||+...+.  |||+|||.|....+.   ..+.|||+|||||++..+.   ...|+-++||||||+
T Consensus       145 -~~~IHRDiKAGNILLse~g~--VKLaDFGSAsi~~PA---nsFvGTPywMAPEVILAMD---EGqYdgkvDvWSLGI  213 (948)
T KOG0577|consen  145 -HNRIHRDIKAGNILLSEPGL--VKLADFGSASIMAPA---NSFVGTPYWMAPEVILAMD---EGQYDGKVDVWSLGI  213 (948)
T ss_pred             -hhHHhhhccccceEecCCCe--eeeccccchhhcCch---hcccCCccccchhHheecc---ccccCCccceeeccc
Confidence             59999999999999998876  999999999887533   2578999999999998775   456888999999986

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=2.3e-27  Score=187.65  Aligned_cols=159  Identities=16%  Similarity=0.185  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+.+++.+ +|+  ||+.++++|.    .+.+.|+||||+ +++|.+++.+.. ..+++..++.++.|++.||.|||
T Consensus        48 ~~~e~~~l~~~-~~~--~i~~~~~~~~----~~~~~~lv~e~~~g~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH  119 (331)
T cd05597          48 FREERDVLVNG-DRR--WITNLHYAFQ----DENNLYLVMDYYVGGDLLTLLSKFE-DRLPEDMARFYLAEMVLAIDSVH  119 (331)
T ss_pred             HHHHHHHHHhC-CCC--CCCceEEEEe----cCCeEEEEEecCCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH
Confidence            34566666666 454  9999999998    567999999999 999999997643 45999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC--CCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ--SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~--~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      ++ |++||||||+|||++.++.  ++|+|||.+..........  ...+++.|+|||++..... ....++.++|+||+|
T Consensus       120 ~~-~ivH~dlkp~Nill~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~~~~~~DiwslG  195 (331)
T cd05597         120 QL-GYVHRDIKPDNVLLDKNGH--IRLADFGSCLRLLADGTVQSNVAVGTPDYISPEILQAMED-GKGRYGPECDWWSLG  195 (331)
T ss_pred             hC-CeEECCCCHHHEEECCCCC--EEEEECCceeecCCCCCccccceeccccccCHHHHhhccc-cccCCCCcceeehhh
Confidence            96 9999999999999988776  9999999987654332222  2468999999999874320 123356789999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +..+      .+..|..+|.
T Consensus       196 ~~l~------el~~g~~Pf~  209 (331)
T cd05597         196 VCMY------EMLYGETPFY  209 (331)
T ss_pred             hHHH------HHhhCCCCCC
Confidence            6322      4444666664

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.95  E-value=1.6e-27  Score=187.93  Aligned_cols=141  Identities=19%  Similarity=0.202  Sum_probs=114.7

Q ss_pred             CccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCce
Q psy320           21 SDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESI   99 (202)
Q Consensus        21 h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~ni   99 (202)
                      ||||+++++.|.    .....|+||||+ +++|..++.+.  +.+++..++.++.|++.||.|||++ |++||||||+||
T Consensus        55 hp~iv~~~~~~~----~~~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~~~~~qi~~~l~~lH~~-givH~dikp~NI  127 (323)
T cd05575          55 HPFLVGLHYSFQ----TADKLYFVLDYVNGGELFFHLQRE--RSFPEPRARFYAAEIASALGYLHSL-NIIYRDLKPENI  127 (323)
T ss_pred             CCCCCCeeEEEE----eCCEEEEEEcCCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-CeEeCCCCHHHe
Confidence            559999999998    567999999999 99999988765  4599999999999999999999996 999999999999


Q ss_pred             eeecCCcceeEEeecccccccccc-cCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHhcC
Q psy320          100 FFKADHVYIMTLINIQQATTHQEC-HDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLNH  178 (202)
Q Consensus       100 l~~~~~~~~~~l~Dfg~a~~~~~~-~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~~~  178 (202)
                      |++.++.  ++|+|||++...... .......+++.|+|||.+..      ..++.++|+||+|+..+      .+..|.
T Consensus       128 ll~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~DvwslG~il~------ell~g~  193 (323)
T cd05575         128 LLDSQGH--VVLTDFGLCKEGIEHSKTTSTFCGTPEYLAPEVLRK------QPYDRTVDWWCLGAVLY------EMLYGL  193 (323)
T ss_pred             EECCCCc--EEEeccCCCcccccCCCccccccCChhhcChhhhcC------CCCCccccccccchhhh------hhhcCC
Confidence            9988876  999999998764322 22224578999999999873      34778999999986322      344466


Q ss_pred             CCCC
Q psy320          179 QDFR  182 (202)
Q Consensus       179 ~~~~  182 (202)
                      ++|.
T Consensus       194 ~pf~  197 (323)
T cd05575         194 PPFY  197 (323)
T ss_pred             CCCC
Confidence            5554

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.95  E-value=3.5e-27  Score=185.33  Aligned_cols=164  Identities=18%  Similarity=0.176  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcC-------CCCCCHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQK-------FQPAPLVVAKIIVNQIL   77 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~-------~~~~~~~~~~~~~~qi~   77 (202)
                      ...+|+++++++ +||  ||++++++|...  .....|++|||++++|.+++....       ...+++..++.++.|++
T Consensus        44 ~~~~E~~~l~~l-~h~--niv~~~~~~~~~--~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~  118 (317)
T cd07868          44 SACREIALLREL-KHP--NVISLQKVFLSH--ADRKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQIL  118 (317)
T ss_pred             HHHHHHHHHHhc-CCC--CCcceeeeEecC--CCcEEEEEEeccCCCHHHHHHhcccccccCCcccCCHHHHHHHHHHHH
Confidence            457899999998 555  999999998742  245789999999889988876432       12489999999999999


Q ss_pred             HHHHHHHhhCCccccCCCCCceeeecC--CcceeEEeecccccccccccC----CCCCCCCccchhhHHHHhhhhccCCC
Q psy320           78 EGLNHLHTKHNLVHTSIKPESIFFKAD--HVYIMTLINIQQATTHQECHD----QQSSSKTKSKIFCEILEQCRLNQDFR  151 (202)
Q Consensus        78 ~~l~~lh~~~~ivH~dl~p~nil~~~~--~~~~~~l~Dfg~a~~~~~~~~----~~~~~~~~~~~ape~~~~~~~~~~~~  151 (202)
                      .||.|||+. |++||||||+|||+..+  ....+||+|||.++.......    .....+++.|+|||.+...     ..
T Consensus       119 ~al~~LH~~-~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~-----~~  192 (317)
T cd07868         119 DGIHYLHAN-WVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGA-----RH  192 (317)
T ss_pred             HHHHHHHhC-CEEcCCCCHHHEEEecCCCCcCcEEEeecCceeccCCCCccccccCCccccccccCCHHHcCC-----CC
Confidence            999999996 99999999999999532  123499999999987643221    1235678899999998732     33


Q ss_pred             CCCCcchhhHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy320          152 LDPRVDPTSIKMYTTFCEILEQCRLNHQDFRPDP  185 (202)
Q Consensus       152 ~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~~~~  185 (202)
                      ++.++|+||+|+.      +..+..|.++|....
T Consensus       193 ~~~~~DiwslG~i------l~el~~g~~~f~~~~  220 (317)
T cd07868         193 YTKAIDIWAIGCI------FAELLTSEPIFHCRQ  220 (317)
T ss_pred             cCchhhHHHHHHH------HHHHHhCCCCccCCc
Confidence            6779999999973      335566888886433

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>KOG0201|consensus

Probab=99.95  E-value=4.7e-29  Score=194.36  Aligned_cols=142  Identities=17%  Similarity=0.261  Sum_probs=122.2

Q ss_pred             HHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            7 TNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         7 ~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      .+|+.+|.++ +++  ||.++|+.+.    .+..++++|||+ ||++.++++...  .+++.....++++++.|+.|+|.
T Consensus        59 qqei~~Ls~~-~~~--~it~yygsyl----~g~~LwiiMey~~gGsv~~lL~~~~--~~~E~~i~~ilre~l~~l~ylH~  129 (467)
T KOG0201|consen   59 QQEISVLSQC-DSP--NITEYYGSYL----KGTKLWIIMEYCGGGSVLDLLKSGN--ILDEFEIAVILREVLKGLDYLHS  129 (467)
T ss_pred             HHHHHHHHhc-Ccc--hHHhhhhhee----ecccHHHHHHHhcCcchhhhhccCC--CCccceeeeehHHHHHHhhhhhh
Confidence            4577777777 455  9999999999    578999999999 999999987653  35888888999999999999999


Q ss_pred             hCCccccCCCCCceeeecCCcceeEEeecccccccccccCC-CCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHH
Q psy320           86 KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ-QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~-~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~  164 (202)
                      + +.+|||||+.|||+..++.  +||+|||++...+..... ..+.||+.|||||++....      |+.++||||||+-
T Consensus       130 ~-~kiHrDIKaanil~s~~g~--vkl~DfgVa~ql~~~~~rr~tfvGTPfwMAPEVI~~~~------Y~~KADIWSLGIT  200 (467)
T KOG0201|consen  130 E-KKIHRDIKAANILLSESGD--VKLADFGVAGQLTNTVKRRKTFVGTPFWMAPEVIKQSG------YDTKADIWSLGIT  200 (467)
T ss_pred             c-ceecccccccceeEeccCc--EEEEecceeeeeechhhccccccccccccchhhhcccc------ccchhhhhhhhHH
Confidence            7 9999999999999999877  999999999988765433 4679999999999999444      8999999999874


Q ss_pred             HH
Q psy320          165 TT  166 (202)
Q Consensus       165 ~~  166 (202)
                      .+
T Consensus       201 ai  202 (467)
T KOG0201|consen  201 AI  202 (467)
T ss_pred             HH
Confidence            43

>PHA02988 hypothetical protein; Provisional

Probab=99.95  E-value=5.5e-27  Score=181.70  Aligned_cols=146  Identities=12%  Similarity=0.049  Sum_probs=119.1

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+++++++ +||  ||+++++++..........++||||+ +++|.+++...  +.++......++.|++.|+.|+
T Consensus        64 ~~~~E~~~l~~l-~h~--nIv~~~g~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~--~~~~~~~~~~i~~~i~~~l~~l  138 (283)
T PHA02988         64 ITENEIKNLRRI-DSN--NILKIYGFIIDIVDDLPRLSLILEYCTRGYLREVLDKE--KDLSFKTKLDMAIDCCKGLYNL  138 (283)
T ss_pred             HHHHHHHHHHhc-CCC--CEEEEeeeEEecccCCCceEEEEEeCCCCcHHHHHhhC--CCCChhHHHHHHHHHHHHHHHH
Confidence            345889999988 555  99999999875222346889999999 99999999765  3589999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |+..+++||||||+||+++.++.  +|++|||.++.....  .....++..|+|||.+....    ..++.++|+||+|+
T Consensus       139 H~~~~~~Hrdlkp~nill~~~~~--~kl~dfg~~~~~~~~--~~~~~~~~~y~aPE~~~~~~----~~~~~k~Di~SlGv  210 (283)
T PHA02988        139 YKYTNKPYKNLTSVSFLVTENYK--LKIICHGLEKILSSP--PFKNVNFMVYFSYKMLNDIF----SEYTIKDDIYSLGV  210 (283)
T ss_pred             HhcCCCCCCcCChhhEEECCCCc--EEEcccchHhhhccc--cccccCcccccCHHHhhhcc----ccccchhhhhHHHH
Confidence            98448999999999999998876  999999998865422  22356788999999987421    34778999999986

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.95  E-value=2.2e-27  Score=187.78  Aligned_cols=158  Identities=15%  Similarity=0.180  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            7 TNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         7 ~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      .+|+.++..+ +|  +||++++++|.    .....|+||||+ +++|.+++.+.. +.+++..++.++.|++.||.|+|+
T Consensus        49 ~~e~~~l~~~-~~--~~i~~l~~~~~----~~~~~~lv~Ey~~gg~L~~~l~~~~-~~l~~~~~~~~~~qi~~~L~~lH~  120 (331)
T cd05624          49 REERNVLVNG-DC--QWITTLHYAFQ----DENYLYLVMDYYVGGDLLTLLSKFE-DRLPEDMARFYIAEMVLAIHSIHQ  120 (331)
T ss_pred             HHHHHHHHhC-CC--CCEeeEEEEEE----cCCEEEEEEeCCCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555 44  49999999998    577999999999 999999997643 458999999999999999999999


Q ss_pred             hCCccccCCCCCceeeecCCcceeEEeecccccccccccCC--CCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           86 KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ--QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~--~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      . |++||||||+|||++.++.  ++|+|||++.........  ....+++.|+|||.+..... ....++.++|+||+|+
T Consensus       121 ~-~iiHrDlkp~Nill~~~~~--~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~~~~~~DiwSlGv  196 (331)
T cd05624         121 L-HYVHRDIKPDNVLLDMNGH--IRLADFGSCLKMNQDGTVQSSVAVGTPDYISPEILQAMED-GMGKYGPECDWWSLGV  196 (331)
T ss_pred             C-CeeeccCchHHEEEcCCCC--EEEEeccceeeccCCCceeeccccCCcccCCHHHHhcccc-CCCCCCCcccEEeeeh
Confidence            5 9999999999999988776  999999999876433222  13468999999999874220 0123567999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~  182 (202)
                      ..+      .+..|..+|.
T Consensus       197 il~------ell~g~~Pf~  209 (331)
T cd05624         197 CMY------EMLYGETPFY  209 (331)
T ss_pred             hhh------hhhhCCCCcc
Confidence            322      3444666664

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>KOG1026|consensus

Probab=99.95  E-value=6.1e-28  Score=201.06  Aligned_cols=170  Identities=17%  Similarity=0.224  Sum_probs=138.3

Q ss_pred             chHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCC------------CCCCHHHH
Q psy320            3 TNYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKF------------QPAPLVVA   69 (202)
Q Consensus         3 ~~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~------------~~~~~~~~   69 (202)
                      +..|++|++.+..+ +||  |||+++|+|.    .++-.|+|+||| .|||.++++....            ..++..+.
T Consensus       533 ~~dF~REaeLla~l-~H~--nIVrLlGVC~----~~~P~~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~  605 (774)
T KOG1026|consen  533 RQDFRREAELLAEL-QHP--NIVRLLGVCR----EGDPLCMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQF  605 (774)
T ss_pred             HHHHHHHHHHHHhc-cCC--CeEEEEEEEc----cCCeeEEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHH
Confidence            35678899999999 555  9999999999    678999999999 9999999986441            12778999


Q ss_pred             HHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC---CCCCCccchhhHHHHhhhh
Q psy320           70 KIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ---SSSKTKSKIFCEILEQCRL  146 (202)
Q Consensus        70 ~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~---~~~~~~~~~ape~~~~~~~  146 (202)
                      +.++.||+.||.||.+. .+|||||-..|+|++.+..  |||+|||+++..-......   ...-...||+||.+.+.. 
T Consensus       606 L~iA~QIAaGM~YLs~~-~FVHRDLATRNCLVge~l~--VKIsDfGLsRdiYssDYYk~~~~t~lPIRWMppEsIly~k-  681 (774)
T KOG1026|consen  606 LHIATQIAAGMEYLSSH-HFVHRDLATRNCLVGENLV--VKISDFGLSRDIYSSDYYKVRGNTLLPIRWMPPESILYGK-  681 (774)
T ss_pred             HHHHHHHHHHHHHHHhC-cccccchhhhhceeccceE--EEecccccchhhhhhhhhcccCCceeeeecCCHHHhhcCc-
Confidence            99999999999999995 9999999999999998776  9999999999865433222   223445899999999666 


Q ss_pred             ccCCCCCCCcchhhHH--HHHHHH------------HHHHHHHhcCCCCCCCCCCC
Q psy320          147 NQDFRLDPRVDPTSIK--MYTTFC------------EILEQCRLNHQDFRPDPRVD  188 (202)
Q Consensus       147 ~~~~~~~~~~Diwsl~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~  188 (202)
                           |+.++||||+|  +|++|+            ++++.+..|+.--.|+....
T Consensus       682 -----FTteSDVWs~GVvLWEIFsyG~QPy~glSn~EVIe~i~~g~lL~~Pe~CP~  732 (774)
T KOG1026|consen  682 -----FTTESDVWSFGVVLWEIFSYGKQPYYGLSNQEVIECIRAGQLLSCPENCPT  732 (774)
T ss_pred             -----ccchhhhhhhhhhhhhhhccccCcccccchHHHHHHHHcCCcccCCCCCCH
Confidence                 89999999995  566666            77777777777555544433

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.95  E-value=3.2e-27  Score=186.92  Aligned_cols=158  Identities=17%  Similarity=0.214  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            7 TNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         7 ~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      .+|+.++..+ +  |++|+++++++.    +....|+||||+ +++|.+++.+.. +.+++..++.++.|++.||.|||+
T Consensus        49 ~~e~~~l~~~-~--~~~i~~~~~~~~----~~~~~~lv~ey~~~g~L~~~l~~~~-~~l~~~~~~~~~~qi~~al~~lH~  120 (332)
T cd05623          49 REERDVLVNG-D--NQWITTLHYAFQ----DENNLYLVMDYYVGGDLLTLLSKFE-DRLPEDMARFYLAEMVIAIDSVHQ  120 (332)
T ss_pred             HHHHHHHhhC-C--CCCEeeEEEEEe----cCCEEEEEEeccCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555 3  459999999998    567999999999 999999997643 458999999999999999999999


Q ss_pred             hCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC--CCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           86 KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ--SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~--~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      . |++||||||+|||++.++.  ++|+|||.+......+...  ...|++.|+|||++.... .....++.++|+||+|+
T Consensus       121 ~-~iiHrDlkp~Nili~~~~~--~kL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~~~~~~DvwSlGv  196 (332)
T cd05623         121 L-HYVHRDIKPDNILMDMNGH--IRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAME-DGKGKYGPECDWWSLGV  196 (332)
T ss_pred             C-CeEecCCCHHHEEECCCCC--EEEeecchheecccCCcceecccccCccccCHHHHhccc-cCCCCCCCcCCEEeeHH
Confidence            5 9999999999999988776  9999999987654322221  346899999999987432 11234677999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~  182 (202)
                      ..+      .+..|..+|.
T Consensus       197 il~------ell~g~~Pf~  209 (332)
T cd05623         197 CMY------EMLYGETPFY  209 (332)
T ss_pred             HHH------HHhcCCCCCC
Confidence            322      4445766664

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.95  E-value=3.9e-27  Score=186.51  Aligned_cols=154  Identities=16%  Similarity=0.206  Sum_probs=123.9

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+++++.+ +||  ||++++++|..    ....|+||||+ +++|.+++.+.  +.+++..+..++.|++.||.||
T Consensus        49 ~~~~E~~~l~~l-~h~--~iv~~~~~~~~----~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~l~~~l~~l  119 (333)
T cd06650          49 QIIRELQVLHEC-NSP--YIVGFYGAFYS----DGEISICMEHMDGGSLDQVLKKA--GRIPEQILGKVSIAVIKGLTYL  119 (333)
T ss_pred             HHHHHHHHHHHC-CCC--cccceeEEEEE----CCEEEEEEecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHH
Confidence            456788888888 455  99999999984    56899999999 89999999765  3489999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |++.+++|+||||+|||++.++.  ++|+|||++...... ......++..|+|||.+..      ..++.++|+||+|+
T Consensus       120 H~~~~ivH~dlkp~Nili~~~~~--~kL~Dfg~~~~~~~~-~~~~~~~~~~y~aPE~~~~------~~~~~~~DvwslG~  190 (333)
T cd06650         120 REKHKIMHRDVKPSNILVNSRGE--IKLCDFGVSGQLIDS-MANSFVGTRSYMSPERLQG------THYSVQSDIWSMGL  190 (333)
T ss_pred             HhcCCEEecCCChhhEEEcCCCC--EEEeeCCcchhhhhh-ccccCCCCccccCHHHhcC------CCCCcHHHHHHHHH
Confidence            98447999999999999988776  999999998765322 2223468889999999873      33677999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~  182 (202)
                      ..      ..+..|..+|.
T Consensus       191 il------~~l~~g~~p~~  203 (333)
T cd06650         191 SL------VEMAIGRYPIP  203 (333)
T ss_pred             HH------HHHHHCCCCCC
Confidence            32      23444666654

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.95  E-value=3.3e-27  Score=188.37  Aligned_cols=157  Identities=20%  Similarity=0.254  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecC--CceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGI--NGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~--~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ...+|+.+++.+ +||  ||++++++|.....  .....|+||||+++++.+.+...    ++...++.++.|++.||.|
T Consensus        62 ~~~~E~~~l~~l-~h~--niv~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~----l~~~~~~~~~~qi~~aL~~  134 (355)
T cd07874          62 RAYRELVLMKCV-NHK--NIISLLNVFTPQKSLEEFQDVYLVMELMDANLCQVIQME----LDHERMSYLLYQMLCGIKH  134 (355)
T ss_pred             HHHHHHHHHHHh-CCC--chhceeeeeeccccccccceeEEEhhhhcccHHHHHhhc----CCHHHHHHHHHHHHHHHHH
Confidence            345678878777 455  99999999875331  23468999999987888777542    8899999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      ||+. |++||||||+|||++.++.  ++|+|||.++............++..|+|||.+..      ..++.++|+||+|
T Consensus       135 LH~~-givHrDikp~Nill~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~------~~~~~~~DiwslG  205 (355)
T cd07874         135 LHSA-GIIHRDLKPSNIVVKSDCT--LKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILG------MGYKENVDIWSVG  205 (355)
T ss_pred             HHhC-CcccCCCChHHEEECCCCC--EEEeeCcccccCCCccccCCccccCCccCHHHHcC------CCCCchhhHHHHH
Confidence            9996 9999999999999998877  99999999987654333345678899999999873      3477899999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +.      +..+..|..+|..
T Consensus       206 ~i------l~el~~g~~pf~~  220 (355)
T cd07874         206 CI------MGEMVRHKILFPG  220 (355)
T ss_pred             HH------HHHHHhCCCCCCC
Confidence            63      2244557766653

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.95  E-value=3.4e-27  Score=188.56  Aligned_cols=157  Identities=20%  Similarity=0.250  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecC--CceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGI--NGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~--~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ..+|+.+++.+ +||  ||++++++|...+.  .....|+||||++++|.+.+..    .++...+..++.|++.||.||
T Consensus        67 ~~~E~~~l~~l-~h~--niv~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~----~~~~~~~~~~~~qi~~~L~~L  139 (359)
T cd07876          67 AYRELVLLKCV-NHK--NIISLLNVFTPQKSLEEFQDVYLVMELMDANLCQVIHM----ELDHERMSYLLYQMLCGIKHL  139 (359)
T ss_pred             HHHHHHHHHhC-CCC--CEeeeeeeeccCCCccccceeEEEEeCCCcCHHHHHhc----cCCHHHHHHHHHHHHHHHHHH
Confidence            45677777777 455  99999999874331  2246899999998788777643    388999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |+. |++||||||+|||++.++.  ++|+|||.++............+++.|+|||.+..      ..++.++|+||+|+
T Consensus       140 H~~-~ivHrDlkp~NIl~~~~~~--~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~~------~~~~~~~DiwSlG~  210 (359)
T cd07876         140 HSA-GIIHRDLKPSNIVVKSDCT--LKILDFGLARTACTNFMMTPYVVTRYYRAPEVILG------MGYKENVDIWSVGC  210 (359)
T ss_pred             HhC-CcccCCCCHHHEEECCCCC--EEEecCCCccccccCccCCCCcccCCCCCchhccC------CCCCcchhhHHHHH
Confidence            996 9999999999999998877  99999999986543333334578889999999974      34778999999997


Q ss_pred             HHHHHHHHHHHHhcCCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      .      +..+..|..+|...
T Consensus       211 i------l~el~tg~~pf~~~  225 (359)
T cd07876         211 I------MGELVKGSVIFQGT  225 (359)
T ss_pred             H------HHHHHhCCCCCCCC
Confidence            3      33555688777643

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=1.4e-27  Score=188.70  Aligned_cols=141  Identities=20%  Similarity=0.210  Sum_probs=114.1

Q ss_pred             HHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhC
Q psy320            9 LIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKH   87 (202)
Q Consensus         9 e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~   87 (202)
                      |..++....-..||||++++++|.    .....|+||||+ +++|.+.+.+.  +.+++..++.++.|++.||.|||++ 
T Consensus        43 e~~~l~~~~~~~~p~i~~~~~~~~----~~~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~~~~~qil~al~~LH~~-  115 (330)
T cd05586          43 ERNILVRTLLDESPFIVGLKFSFQ----TDSDLYLVTDYMSGGELFWHLQKE--GRFSEDRAKFYIAELVLALEHLHKY-  115 (330)
T ss_pred             HHHHHHHhccCCCCcCcceEEEEe----cCCeEEEEEcCCCCChHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHC-
Confidence            444555443123569999999998    567999999999 89999888765  4599999999999999999999996 


Q ss_pred             CccccCCCCCceeeecCCcceeEEeecccccccccc-cCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           88 NLVHTSIKPESIFFKADHVYIMTLINIQQATTHQEC-HDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        88 ~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~-~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |++||||||+|||++.++.  ++|+|||++...... .......|+..|+|||.+..     ...++.++|+||+|+
T Consensus       116 ~ivHrDlkp~Nili~~~~~--~kl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~~DvwslGv  185 (330)
T cd05586         116 DIVYRDLKPENILLDATGH--IALCDFGLSKANLTDNKTTNTFCGTTEYLAPEVLLD-----EKGYTKHVDFWSLGV  185 (330)
T ss_pred             CeEeccCCHHHeEECCCCC--EEEecCCcCcCCCCCCCCccCccCCccccCHHHHcC-----CCCCCCccceecccc
Confidence            9999999999999998876  999999998764322 22234578999999999862     233677999999985

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.95  E-value=6.8e-27  Score=181.30  Aligned_cols=157  Identities=17%  Similarity=0.151  Sum_probs=127.8

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+.+++++ +|+  +|+.+++.+.    .....|+||||+ +++|.+++......++++..+..++.|++.||.|||
T Consensus        47 ~~~E~~il~~l-~~~--~i~~~~~~~~----~~~~~~lv~e~~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH  119 (285)
T cd05630          47 ALNEKQILEKV-NSR--FVVSLAYAYE----TKDALCLVLTLMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLH  119 (285)
T ss_pred             HHHHHHHHHhC-CCC--CeeeeeEEEe----cCCEEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH
Confidence            45688888888 455  9999999998    466899999999 899999887655456999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~  164 (202)
                      +. |++|+||||+||+++.++.  ++|+|||.+.............++..|+|||.+..      ..++.++|+||+|+.
T Consensus       120 ~~-~iiH~dikp~Nil~~~~~~--~~l~Dfg~~~~~~~~~~~~~~~g~~~y~aPE~~~~------~~~~~~~DiwslG~~  190 (285)
T cd05630         120 QE-RIVYRDLKPENILLDDHGH--IRISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVKN------ERYTFSPDWWALGCL  190 (285)
T ss_pred             hC-CEEeCCCCHHHEEECCCCC--EEEeeccceeecCCCccccCCCCCccccChHHHcC------CCCCCccccHHHHHH
Confidence            95 9999999999999998776  99999999876543333234578899999999873      347789999999863


Q ss_pred             HHHHHHHHHHHhcCCCCCCC
Q psy320          165 TTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~  184 (202)
                      .+      .+..|.++|...
T Consensus       191 l~------~l~~g~~Pf~~~  204 (285)
T cd05630         191 LY------EMIAGQSPFQQR  204 (285)
T ss_pred             HH------HHHhCCCCCCCC
Confidence            22      455588888653

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.95  E-value=4.3e-27  Score=190.12  Aligned_cols=154  Identities=23%  Similarity=0.267  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ...+|+++++++ +||  ||++++++|.    .....|+|||+++++|.+++...  +.+++..++.++.|++.||.|||
T Consensus       132 ~~~~E~~il~~l-~h~--~iv~~~~~~~----~~~~~~lv~e~~~~~l~~~l~~~--~~l~~~~~~~i~~ql~~aL~~LH  202 (392)
T PHA03207        132 TPGREIDILKTI-SHR--AIINLIHAYR----WKSTVCMVMPKYKCDLFTYVDRS--GPLPLEQAITIQRRLLEALAYLH  202 (392)
T ss_pred             cHHHHHHHHHhc-CCC--CccceeeeEe----eCCEEEEEehhcCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH
Confidence            346799999998 555  9999999998    46689999999988999988544  45999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC---CCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ---QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~---~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      +. ||+||||||+|||++.++.  ++|+|||++.........   ....++..|+|||++...      .++.++|+||+
T Consensus       203 ~~-givHrDlkp~Nill~~~~~--~~l~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~~Dvwsl  273 (392)
T PHA03207        203 GR-GIIHRDVKTENIFLDEPEN--AVLGDFGAACKLDAHPDTPQCYGWSGTLETNSPELLALD------PYCAKTDIWSA  273 (392)
T ss_pred             HC-CccccCCCHHHEEEcCCCC--EEEccCccccccCcccccccccccccccCccCHhHhcCC------CCCchhhHHHH
Confidence            96 9999999999999998876  999999999765432221   235689999999998743      37789999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCC
Q psy320          162 KMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      |+.      +..+..|..+|.
T Consensus       274 Gvi------l~el~~g~~pf~  288 (392)
T PHA03207        274 GLV------LFEMSVKNVTLF  288 (392)
T ss_pred             HHH------HHHHHHCCCCCC
Confidence            863      224444666664

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.95  E-value=5.1e-27  Score=181.84  Aligned_cols=156  Identities=18%  Similarity=0.223  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ...+|+++++.+ +||  ||++++++|.    .....|+||||+.+++.+.+.... +.+++..++.++.|++.||.|||
T Consensus        46 ~~~~E~~~l~~l-~h~--~iv~~~~~~~----~~~~~~lv~e~~~~~~l~~~~~~~-~~~~~~~~~~~~~qi~~~L~~lH  117 (287)
T cd07848          46 TTLRELKMLRTL-KQE--NIVELKEAFR----RRGKLYLVFEYVEKNMLELLEEMP-NGVPPEKVRSYIYQLIKAIHWCH  117 (287)
T ss_pred             hHHHHHHHHHhC-CCc--cccchhhhEe----cCCEEEEEEecCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHH
Confidence            446788888888 455  9999999998    466999999999444444444332 45999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccC--CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD--QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~--~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      +. |++|+||||+||+++.++.  ++|+|||.+........  .....+++.|+|||.+..      ..++.++|+||+|
T Consensus       118 ~~-~i~H~dlkp~Nill~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~DiwslG  188 (287)
T cd07848         118 KN-DIVHRDIKPENLLISHNDV--LKLCDFGFARNLSEGSNANYTEYVATRWYRSPELLLG------APYGKAVDMWSVG  188 (287)
T ss_pred             HC-CeecCCCCHHHEEEcCCCc--EEEeeccCcccccccccccccccccccccCCcHHHcC------CCCCCchhHHhHH
Confidence            95 9999999999999988776  99999999987643221  123468889999999873      3377899999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +.      +..+..|.++|..
T Consensus       189 vi------l~el~~g~~pf~~  203 (287)
T cd07848         189 CI------LGELSDGQPLFPG  203 (287)
T ss_pred             HH------HHHHHhCCCCCCC
Confidence            73      2245557777754

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.95  E-value=5.2e-27  Score=187.84  Aligned_cols=157  Identities=20%  Similarity=0.247  Sum_probs=123.8

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecC--CceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGI--NGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~--~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ...+|+.+++.+ +||  ||+++++++.....  .....|+||||++++|.+.+...    ++...+..++.|++.||.|
T Consensus        69 ~~~~E~~~l~~l-~h~--~ii~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~----~~~~~~~~~~~qi~~aL~~  141 (364)
T cd07875          69 RAYRELVLMKCV-NHK--NIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQME----LDHERMSYLLYQMLCGIKH  141 (364)
T ss_pred             HHHHHHHHHHhc-CCC--CccccceeecccccccccCeEEEEEeCCCCCHHHHHHhc----CCHHHHHHHHHHHHHHHHH
Confidence            345677777777 455  99999998864321  23478999999988888877542    8889999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      ||++ |++||||||+|||++.++.  ++|+|||.++............++..|+|||.+..      ..++.++|+||+|
T Consensus       142 LH~~-~ivH~Dlkp~NIll~~~~~--~kL~DfG~a~~~~~~~~~~~~~~t~~y~aPE~~~~------~~~~~~~DiwSlG  212 (364)
T cd07875         142 LHSA-GIIHRDLKPSNIVVKSDCT--LKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILG------MGYKENVDIWSVG  212 (364)
T ss_pred             HhhC-CeecCCCCHHHEEECCCCc--EEEEeCCCccccCCCCcccCCcccCCcCCHHHHhC------CCCCchhhHHhHH
Confidence            9996 9999999999999998876  99999999987644333345578899999999974      3478899999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +.      +..+..|..+|..
T Consensus       213 ~i------l~ell~g~~pf~~  227 (364)
T cd07875         213 CI------MGEMIKGGVLFPG  227 (364)
T ss_pred             HH------HHHHHhCCCCCCC
Confidence            73      2245557777753

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.95  E-value=1.3e-26  Score=179.77  Aligned_cols=156  Identities=20%  Similarity=0.177  Sum_probs=126.8

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+++++.+ +|+  ||+.+.+.|.    .+...|+||||+ +++|.+.+......++++..+..++.|++.||.|||
T Consensus        47 ~~~E~~il~~l-~~~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH  119 (285)
T cd05632          47 ALNEKQILEKV-NSQ--FVVNLAYAYE----TKDALCLVLTIMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLH  119 (285)
T ss_pred             HHHHHHHHHHc-CCc--CceeEEEEEe----cCCEEEEEEEeccCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            45688888888 455  9999999998    567999999999 899998887655456999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~  164 (202)
                      ++ |++||||||+||+++.++.  ++|+|||.+.............++..|++||.+..      ..++.++|+||+|+.
T Consensus       120 ~~-~iiH~dikp~Nili~~~~~--~kl~Dfg~~~~~~~~~~~~~~~g~~~~~aPE~~~~------~~~~~~~Di~slG~~  190 (285)
T cd05632         120 RE-NTVYRDLKPENILLDDYGH--IRISDLGLAVKIPEGESIRGRVGTVGYMAPEVLNN------QRYTLSPDYWGLGCL  190 (285)
T ss_pred             hC-CeeecCCCHHHEEECCCCC--EEEecCCcceecCCCCcccCCCCCcCccChHHhcC------CCCCcccchHHHHHH
Confidence            96 9999999999999988766  99999999876543222234568899999999873      337789999999863


Q ss_pred             HHHHHHHHHHHhcCCCCCC
Q psy320          165 TTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~  183 (202)
                      .      ..+..|..+|..
T Consensus       191 l------~~l~~g~~P~~~  203 (285)
T cd05632         191 I------YEMIEGQSPFRG  203 (285)
T ss_pred             H------HHHHhCCCCCCC
Confidence            2      244557777754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>KOG0984|consensus

Probab=99.95  E-value=8.7e-28  Score=171.40  Aligned_cols=135  Identities=15%  Similarity=0.164  Sum_probs=115.3

Q ss_pred             CccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCc
Q psy320           21 SDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQK--FQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPES   98 (202)
Q Consensus        21 h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~--~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~n   98 (202)
                      .|++|.++|...    +....++-||.|..||..+.++--  ++..|+...-+++..++.||.|||++++++|||+||+|
T Consensus       104 CPf~V~FyGa~~----regdvwIcME~M~tSldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~kL~vIHRDvKPsN  179 (282)
T KOG0984|consen  104 CPFTVHFYGALF----REGDVWICMELMDTSLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHSKLSVIHRDVKPSN  179 (282)
T ss_pred             CCeEEEeehhhh----ccccEEEeHHHhhhhHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHHHhhhhhccCCcce
Confidence            449999999987    455899999999999988876432  35699999999999999999999998899999999999


Q ss_pred             eeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           99 IFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        99 il~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      ||++.+++  +|+||||++-...+.-......|...|+|||.+....  ....|+.++|+||||+
T Consensus       180 iLIn~~Gq--VKiCDFGIsG~L~dSiAkt~daGCkpYmaPEri~~e~--n~~gY~vksDvWSLGI  240 (282)
T KOG0984|consen  180 ILINYDGQ--VKICDFGISGYLVDSIAKTMDAGCKPYMAPERINPEL--NQKGYSVKSDVWSLGI  240 (282)
T ss_pred             EEEccCCc--EEEcccccceeehhhhHHHHhcCCCccCChhhcCccc--Ccccceeehhhhhhhh
Confidence            99999987  9999999998876555555578889999999987554  2347888999999975

>KOG0983|consensus

Probab=99.95  E-value=3.2e-28  Score=180.24  Aligned_cols=137  Identities=20%  Similarity=0.304  Sum_probs=119.7

Q ss_pred             hcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCC
Q psy320           17 QKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKP   96 (202)
Q Consensus        17 ~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p   96 (202)
                      ++|..|+||+.+|+|.    .....++-||.|+..++.++++.. +++|+..+-++...++.||.||-.++||+|||+||
T Consensus       146 ~s~dcpyIV~c~GyFi----~n~dV~IcMelMs~C~ekLlkrik-~piPE~ilGk~tva~v~AL~YLKeKH~viHRDvKP  220 (391)
T KOG0983|consen  146 KSHDCPYIVQCFGYFI----TNTDVFICMELMSTCAEKLLKRIK-GPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKP  220 (391)
T ss_pred             hccCCCeeeeeeeEEe----eCchHHHHHHHHHHHHHHHHHHhc-CCchHHhhhhhHHHHHHHHHHHHHhcceeecccCc
Confidence            3565679999999999    466888999999888888887654 66999999999999999999999999999999999


Q ss_pred             CceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           97 ESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        97 ~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      +|||++..++  +|+||||++-............|.+.|+|||-+.-..   ...|+.++|+||+|+
T Consensus       221 SNILlDe~Gn--iKlCDFGIsGrlvdSkAhtrsAGC~~YMaPERidp~~---~~kYDiRaDVWSlGI  282 (391)
T KOG0983|consen  221 SNILLDERGN--IKLCDFGISGRLVDSKAHTRSAGCAAYMAPERIDPPD---KPKYDIRADVWSLGI  282 (391)
T ss_pred             cceEEccCCC--EEeecccccceeecccccccccCCccccCccccCCCC---CCccchhhhhhhhcc
Confidence            9999999988  9999999999887666566678999999999998432   567899999999976

>KOG1152|consensus

Probab=99.95  E-value=5.8e-28  Score=193.96  Aligned_cols=141  Identities=23%  Similarity=0.318  Sum_probs=124.3

Q ss_pred             HHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc--cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q psy320            9 LIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM--AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTK   86 (202)
Q Consensus         9 e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~--~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~   86 (202)
                      ||++|..+.+|+|+||++++++|+    +..++|++||.-  +-+|++++...+  ++++.+++.+++|++.|+++||+.
T Consensus       616 EIqIla~l~~~sH~NIlKlLdfFE----ddd~yyl~te~hg~gIDLFd~IE~kp--~m~E~eAk~IFkQV~agi~hlh~~  689 (772)
T KOG1152|consen  616 EIQILATLNKHSHENILKLLDFFE----DDDYYYLETEVHGEGIDLFDFIEFKP--RMDEPEAKLIFKQVVAGIKHLHDQ  689 (772)
T ss_pred             hHHHHHHhhhcCccchhhhhheee----cCCeeEEEecCCCCCcchhhhhhccC--ccchHHHHHHHHHHHhcccccccc
Confidence            899999999999999999999999    566999999998  789999998774  499999999999999999999996


Q ss_pred             CCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCC-CCCcchhhHHHHH
Q psy320           87 HNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRL-DPRVDPTSIKMYT  165 (202)
Q Consensus        87 ~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~-~~~~Diwsl~~~~  165 (202)
                       ||||||||-+|+.++..|-  +||+|||.|.... .+---.+.||..|.|||++.+..      | ++..|||++|++.
T Consensus       690 -~ivhrdikdenvivd~~g~--~klidfgsaa~~k-sgpfd~f~gtv~~aapevl~g~~------y~gk~qdiwalgill  759 (772)
T KOG1152|consen  690 -GIVHRDIKDENVIVDSNGF--VKLIDFGSAAYTK-SGPFDVFVGTVDYAAPEVLGGEK------YLGKPQDIWALGILL  759 (772)
T ss_pred             -CceecccccccEEEecCCe--EEEeeccchhhhc-CCCcceeeeeccccchhhhCCCc------cCCCcchhhhhhhee
Confidence             9999999999999988775  9999999987754 33333578999999999999665      4 4578999999743

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.95  E-value=1.5e-26  Score=180.74  Aligned_cols=143  Identities=14%  Similarity=0.193  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC-----------------CCCCCH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK-----------------FQPAPL   66 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~-----------------~~~~~~   66 (202)
                      .+.+|++++.++ +||  ||+++++++.    .....|+||||+ +++|.+++....                 ...++.
T Consensus        65 ~~~~E~~~l~~l-~h~--niv~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (304)
T cd05096          65 DFLKEVKILSRL-KDP--NIIRLLGVCV----DEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISY  137 (304)
T ss_pred             HHHHHHHHHhhc-CCC--CeeEEEEEEe----cCCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccH
Confidence            356788888888 555  9999999998    456799999999 999999986532                 123677


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC---CCCCCCccchhhHHHHh
Q psy320           67 VVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ---QSSSKTKSKIFCEILEQ  143 (202)
Q Consensus        67 ~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~---~~~~~~~~~~ape~~~~  143 (202)
                      ..+..++.|++.||.|||+. |++|+||||+|||++.++.  +||+|||.++........   ....++..|+|||.+..
T Consensus       138 ~~~~~i~~~i~~al~~lH~~-~ivH~dlkp~Nill~~~~~--~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  214 (304)
T cd05096         138 SSLLHVALQIASGMKYLSSL-NFVHRDLATRNCLVGENLT--IKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILM  214 (304)
T ss_pred             HHHHHHHHHHHHHHHHHHHC-CccccCcchhheEEcCCcc--EEECCCccceecccCceeEecCcCCCCccccCHHHHhc
Confidence            88999999999999999995 9999999999999998776  999999999865322111   12344678999999873


Q ss_pred             hhhccCCCCCCCcchhhHHH
Q psy320          144 CRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus       144 ~~~~~~~~~~~~~Diwsl~~  163 (202)
                      .      .++.++|+||+|+
T Consensus       215 ~------~~~~~~Dv~slG~  228 (304)
T cd05096         215 G------KFTTASDVWAFGV  228 (304)
T ss_pred             C------CCCchhhhHHHHH
Confidence            3      3778999999975

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>KOG0614|consensus

Probab=99.95  E-value=4.4e-28  Score=192.30  Aligned_cols=154  Identities=18%  Similarity=0.200  Sum_probs=132.6

Q ss_pred             HHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhC
Q psy320            9 LIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKH   87 (202)
Q Consensus         9 e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~   87 (202)
                      |-.++...+   .|+||++|-.|.    +.+++|+.||-| ||.|+..++..+  .|+..+++.++..++.|+.|||++ 
T Consensus       470 Er~Im~~~~---s~fIvrLYrTfr----d~kyvYmLmEaClGGElWTiLrdRg--~Fdd~tarF~~acv~EAfeYLH~k-  539 (732)
T KOG0614|consen  470 ERNIMMECR---SDFIVRLYRTFR----DSKYVYMLMEACLGGELWTILRDRG--SFDDYTARFYVACVLEAFEYLHRK-  539 (732)
T ss_pred             HHHHHHhcC---chHHHHHHHHhc----cchhhhhhHHhhcCchhhhhhhhcC--CcccchhhhhHHHHHHHHHHHHhc-
Confidence            444444442   459999999999    678999999999 999999998875  499999999999999999999997 


Q ss_pred             CccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHHHH
Q psy320           88 NLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTTF  167 (202)
Q Consensus        88 ~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~~~  167 (202)
                      ||+.|||||+|.+++..+-  +||.|||.|+.......-..++||+.|.|||++.      +...+.++|.||||++.. 
T Consensus       540 ~iIYRDLKPENllLd~~Gy--~KLVDFGFAKki~~g~KTwTFcGTpEYVAPEIIL------nKGHD~avDyWaLGIli~-  610 (732)
T KOG0614|consen  540 GIIYRDLKPENLLLDNRGY--LKLVDFGFAKKIGSGRKTWTFCGTPEYVAPEIIL------NKGHDRAVDYWALGILIY-  610 (732)
T ss_pred             CceeccCChhheeeccCCc--eEEeehhhHHHhccCCceeeecCCcccccchhhh------ccCcchhhHHHHHHHHHH-
Confidence            9999999999999998876  9999999999987666666789999999999999      555788999999998533 


Q ss_pred             HHHHHHHHhcCCCCCCCCC
Q psy320          168 CEILEQCRLNHQDFRPDPR  186 (202)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~  186 (202)
                           .++.|.|||+....
T Consensus       611 -----ELL~G~pPFs~~dp  624 (732)
T KOG0614|consen  611 -----ELLTGSPPFSGVDP  624 (732)
T ss_pred             -----HHHcCCCCCCCCch
Confidence                 56669999986543

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.95  E-value=1.6e-26  Score=181.11  Aligned_cols=157  Identities=18%  Similarity=0.202  Sum_probs=124.7

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      .+.+|+++++++ +||  ||+++++++.    .....|+||||+.++|.+++.... ..++...++.++.|++.||.|||
T Consensus        50 ~~~~E~~~l~~l-~h~--~iv~~~~~~~----~~~~~~lv~e~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~aL~~lH  121 (309)
T cd07872          50 TAIREVSLLKDL-KHA--NIVTLHDIVH----TDKSLTLVFEYLDKDLKQYMDDCG-NIMSMHNVKIFLYQILRGLAYCH  121 (309)
T ss_pred             hHHHHHHHHHhC-CCC--CcceEEEEEe----eCCeEEEEEeCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHH
Confidence            455788888888 455  9999999998    466899999999879988886653 45899999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      +. |++||||||+||+++.++.  ++|+|||.+....... ......++..|++||.+..     ...++.++|+||+|+
T Consensus       122 ~~-~ivH~dlkp~Nill~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-----~~~~~~~~DiwslG~  193 (309)
T cd07872         122 RR-KVLHRDLKPQNLLINERGE--LKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLG-----SSEYSTQIDMWGVGC  193 (309)
T ss_pred             HC-CeecCCCCHHHEEECCCCC--EEECccccceecCCCccccccccccccccCCHHHhC-----CCCCCcHHHHHHHHH
Confidence            96 9999999999999998776  9999999987653322 2223467889999999863     233677999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~  183 (202)
                      .      +..+..|.++|..
T Consensus       194 i------l~el~tg~~pf~~  207 (309)
T cd07872         194 I------FFEMASGRPLFPG  207 (309)
T ss_pred             H------HHHHHhCCCCCCC
Confidence            3      2345557777754

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.95  E-value=1.1e-26  Score=186.62  Aligned_cols=158  Identities=16%  Similarity=0.192  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC-----------------------
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK-----------------------   60 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~-----------------------   60 (202)
                      ...+|+++++.+.+|+  ||++++++|.    .+...|+||||+ +++|.+++....                       
T Consensus        87 ~~~~E~~il~~l~~h~--nIv~~~~~~~----~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (374)
T cd05106          87 ALMSELKILSHLGQHK--NIVNLLGACT----HGGPVLVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNI  160 (374)
T ss_pred             HHHHHHHHHHhhccCC--ceeeEeeEec----CCCCeEEeHhhccCCcHHHHHHhhhhhhcccccccccccccccccccc
Confidence            4567888888885565  9999999998    566899999999 999999886431                       


Q ss_pred             ---------------------------------------------CCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCC
Q psy320           61 ---------------------------------------------FQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIK   95 (202)
Q Consensus        61 ---------------------------------------------~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~   95 (202)
                                                                   ..++++..+..++.|++.||.|||++ |++|||||
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~-giiHrDLk  239 (374)
T cd05106         161 TLEKKYIRSDSGFSSQGSDTYVEMRPVSSSSSQSSDSKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLASK-NCIHRDVA  239 (374)
T ss_pred             chhcccccccccccccccccccccCCccccccccccccchhccCCCCCcCHHHHHHHHHHHHHHHHHHHHC-CEEeccCc
Confidence                                                         12478888999999999999999996 99999999


Q ss_pred             CCceeeecCCcceeEEeecccccccccccCCC---CCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHHHHHHHHH
Q psy320           96 PESIFFKADHVYIMTLINIQQATTHQECHDQQ---SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILE  172 (202)
Q Consensus        96 p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~---~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~~~~~~~~  172 (202)
                      |+|||++.++.  ++|+|||+++.........   ...++..|+|||.+..      ..++.++|+||+|+..     ++
T Consensus       240 p~Nil~~~~~~--~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~DvwSlGvil-----~e  306 (374)
T cd05106         240 ARNVLLTDGRV--AKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFD------CVYTVQSDVWSYGILL-----WE  306 (374)
T ss_pred             hheEEEeCCCe--EEEeeceeeeeccCCcceeeccCCCCccceeCHHHhcC------CCCCccccHHHHHHHH-----HH
Confidence            99999987766  9999999997654322111   1234567999999873      3378899999998632     22


Q ss_pred             HHHhcCCCCC
Q psy320          173 QCRLNHQDFR  182 (202)
Q Consensus       173 ~~~~~~~~~~  182 (202)
                      .+..|..+|.
T Consensus       307 llt~G~~Pf~  316 (374)
T cd05106         307 IFSLGKSPYP  316 (374)
T ss_pred             HHhCCCCCCc
Confidence            2223666654

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>KOG0193|consensus

Probab=99.95  E-value=5.1e-27  Score=189.32  Aligned_cols=145  Identities=18%  Similarity=0.239  Sum_probs=122.0

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +++++|+..+++.+   |.||+-++|+|.    +... -+|+.+| |.||+.+++-.. .+|.......|++|++.||.|
T Consensus       433 qaFKnEVa~lkkTR---H~NIlLFMG~~~----~p~~-AIiTqwCeGsSLY~hlHv~e-tkfdm~~~idIAqQiaqGM~Y  503 (678)
T KOG0193|consen  433 QAFKNEVAVLKKTR---HENILLFMGACM----NPPL-AIITQWCEGSSLYTHLHVQE-TKFDMNTTIDIAQQIAQGMDY  503 (678)
T ss_pred             HHHHHHHHHHhhcc---hhhheeeehhhc----CCce-eeeehhccCchhhhhccchh-hhhhHHHHHHHHHHHHHhhhh
Confidence            57889999998884   559999999998    3434 8999999 999999998655 569999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeeccccccccc-ccCCC--CCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQE-CHDQQ--SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~-~~~~~--~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      ||.+ +|+|||||..|||+..++.  |||+|||++..-.. .+...  ...+...|+|||+++...   ..+|++.+|+|
T Consensus       504 LHAK-~IIHrDLKSnNIFl~~~~k--VkIgDFGLatvk~~w~g~~q~~qp~gsilwmAPEvIRmqd---~nPfS~qSDVY  577 (678)
T KOG0193|consen  504 LHAK-NIIHRDLKSNNIFLHEDLK--VKIGDFGLATVKTRWSGEQQLEQPHGSLLWMAPEVIRMQD---DNPFSFQSDVY  577 (678)
T ss_pred             hhhh-hhhhhhccccceEEccCCc--EEEecccceeeeeeeccccccCCCccchhhhcHHHHhhcc---cCCCCcccchh
Confidence            9998 9999999999999999877  99999999876543 12221  335677899999999444   67899999999


Q ss_pred             hHHH
Q psy320          160 SIKM  163 (202)
Q Consensus       160 sl~~  163 (202)
                      |+|+
T Consensus       578 aFGi  581 (678)
T KOG0193|consen  578 AFGI  581 (678)
T ss_pred             hhhH
Confidence            9975

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.94  E-value=5.9e-27  Score=187.14  Aligned_cols=142  Identities=23%  Similarity=0.345  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      ...|+.+++++ +||  ||+++++++.    .+...|+|+|++.++|.+++.... +.+++..++.++.|++.||.|||+
T Consensus       104 ~~~E~~~l~~l-~h~--~iv~~~~~~~----~~~~~~lv~e~~~~~l~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~  175 (357)
T PHA03209        104 TLIEAMLLQNV-NHP--SVIRMKDTLV----SGAITCMVLPHYSSDLYTYLTKRS-RPLPIDQALIIEKQILEGLRYLHA  175 (357)
T ss_pred             cHHHHHHHHhC-CCC--CCcChhheEE----eCCeeEEEEEccCCcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            35688888888 455  9999999998    466899999999889999886644 469999999999999999999999


Q ss_pred             hCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHH
Q psy320           86 KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~  164 (202)
                      . ||+||||||+|||++.++.  ++|+|||.+.............++..|+|||.+...      .++.++|+||+|+.
T Consensus       176 ~-~ivHrDlkp~Nill~~~~~--~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~~DiwSlGvv  245 (357)
T PHA03209        176 Q-RIIHRDVKTENIFINDVDQ--VCIGDLGAAQFPVVAPAFLGLAGTVETNAPEVLARD------KYNSKADIWSAGIV  245 (357)
T ss_pred             C-CeecCCCCHHHEEECCCCC--EEEecCccccccccCcccccccccccccCCeecCCC------CCCchhhHHHHHHH
Confidence            6 9999999999999988776  999999998764322223345688999999998743      37889999999853

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.94  E-value=2e-26  Score=176.90  Aligned_cols=143  Identities=14%  Similarity=0.134  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+..+.++ +||  ||+++++++.    .+...++||||+ +++|.+++.... +.+++..++.++.|++.||.||
T Consensus        52 ~~~~e~~~l~~l-~h~--~iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~-~~l~~~~~~~~~~~i~~al~~l  123 (266)
T cd05064          52 GFLAEALTLGQF-DHS--NIVRLEGVIT----RGNTMMIVTEYMSNGALDSFLRKHE-GQLVAGQLMGMLPGLASGMKYL  123 (266)
T ss_pred             HHHHHHHHHhcC-CCC--CcCeEEEEEe----cCCCcEEEEEeCCCCcHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHH
Confidence            345677777776 455  9999999998    566899999999 889999987643 4589999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC--CCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ--SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~--~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      |+. |++|+||||+||+++.++.  ++++|||.+..........  ...++..|+|||.+...      .++.++|+||+
T Consensus       124 H~~-~iiH~dikp~nili~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~------~~~~~~Di~sl  194 (266)
T cd05064         124 SEM-GYVHKGLAAHKVLVNSDLV--CKISGFRRLQEDKSEAIYTTMSGKSPVLWAAPEAIQYH------HFSSASDVWSF  194 (266)
T ss_pred             HHC-CEeeccccHhhEEEcCCCc--EEECCCcccccccccchhcccCCCCceeecCHHHHhhC------CccchhHHHHH
Confidence            995 9999999999999988776  9999999876543221111  22345689999998743      37789999999


Q ss_pred             HHH
Q psy320          162 KMY  164 (202)
Q Consensus       162 ~~~  164 (202)
                      |+.
T Consensus       195 G~~  197 (266)
T cd05064         195 GIV  197 (266)
T ss_pred             HHH
Confidence            863

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.94  E-value=2.1e-26  Score=177.07  Aligned_cols=144  Identities=12%  Similarity=0.161  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC--------------CCCCCHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK--------------FQPAPLVVA   69 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~--------------~~~~~~~~~   69 (202)
                      ...+|+++++++.+||  ||++++++|.    .....++||||+ +++|.+++....              ...++...+
T Consensus        41 ~~~~E~~~l~~l~~h~--~iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~  114 (270)
T cd05047          41 DFAGELEVLCKLGHHP--NIINLLGACE----HRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQL  114 (270)
T ss_pred             HHHHHHHHHHhhccCC--CeeeEEEEEe----cCCCceEEEEeCCCCcHHHHHHhccccccccccccccCCcCCCCHHHH
Confidence            3456888888886666  9999999998    455789999999 899999987532              124788999


Q ss_pred             HHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccC
Q psy320           70 KIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQD  149 (202)
Q Consensus        70 ~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~  149 (202)
                      ..++.|++.|+.|||+. |++|+||||+||+++.++.  ++++|||++..............+..|++||.+..      
T Consensus       115 ~~~~~~i~~al~~lH~~-~i~H~dikp~nili~~~~~--~kl~dfgl~~~~~~~~~~~~~~~~~~y~apE~~~~------  185 (270)
T cd05047         115 LHFAADVARGMDYLSQK-QFIHRDLAARNILVGENYV--AKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNY------  185 (270)
T ss_pred             HHHHHHHHHHHHHHHHC-CEeecccccceEEEcCCCe--EEECCCCCccccchhhhccCCCCccccCChHHHcc------
Confidence            99999999999999995 9999999999999988776  99999999864321111112233456999998863      


Q ss_pred             CCCCCCcchhhHHH
Q psy320          150 FRLDPRVDPTSIKM  163 (202)
Q Consensus       150 ~~~~~~~Diwsl~~  163 (202)
                      ..++.++|+||+|+
T Consensus       186 ~~~~~~~Di~slG~  199 (270)
T cd05047         186 SVYTTNSDVWSYGV  199 (270)
T ss_pred             CCCCchhhHHHHHH
Confidence            33677999999985

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.94  E-value=2.9e-26  Score=177.17  Aligned_cols=143  Identities=14%  Similarity=0.148  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCC--------------CCCCHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKF--------------QPAPLVVA   69 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~--------------~~~~~~~~   69 (202)
                      .+.+|++.+.++ +||  ||+++++++.    .....|++|||+ +++|.+++.....              ..+++..+
T Consensus        54 ~~~~ei~~l~~l-~h~--~i~~~~~~~~----~~~~~~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~  126 (283)
T cd05048          54 EFRQEAELMSDL-QHP--NIVCLLGVCT----KEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDF  126 (283)
T ss_pred             HHHHHHHHHHhc-CCc--ccceEEEEEc----CCCceEEEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHH
Confidence            346788888887 455  9999999998    456899999999 8999999976421              45888999


Q ss_pred             HHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC---CCCCCCCccchhhHHHHhhhh
Q psy320           70 KIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD---QQSSSKTKSKIFCEILEQCRL  146 (202)
Q Consensus        70 ~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~ape~~~~~~~  146 (202)
                      ..++.|++.||.|||+. |++|+||||+||+++.++.  ++|+|||.+........   .....+++.|+|||.+..   
T Consensus       127 ~~~~~~l~~al~~lH~~-~i~H~dlkp~Nil~~~~~~--~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~---  200 (283)
T cd05048         127 LHIAIQIAAGMEYLSSH-HFVHRDLAARNCLVGEGLT--VKISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAILY---  200 (283)
T ss_pred             HHHHHHHHHHHHHHHhC-CeeccccccceEEEcCCCc--EEECCCcceeeccccccccccCCCcccccccCHHHhcc---
Confidence            99999999999999996 9999999999999998776  99999999876532211   112345678999999873   


Q ss_pred             ccCCCCCCCcchhhHHH
Q psy320          147 NQDFRLDPRVDPTSIKM  163 (202)
Q Consensus       147 ~~~~~~~~~~Diwsl~~  163 (202)
                         ..++.++|+||+|+
T Consensus       201 ---~~~~~~sDv~slG~  214 (283)
T cd05048         201 ---GKFTTESDIWSFGV  214 (283)
T ss_pred             ---CcCchhhhHHHHHH
Confidence               33778999999985

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>KOG0690|consensus

Probab=99.94  E-value=1.3e-27  Score=181.07  Aligned_cols=155  Identities=20%  Similarity=0.255  Sum_probs=133.5

Q ss_pred             cCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCC
Q psy320           18 KHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKP   96 (202)
Q Consensus        18 ~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p   96 (202)
                      +..||++..+.-.|+    ...++|+||||+ ||.|.-.+.+.  +.|+++.++.+..+|++||.|||++ +||.||+|.
T Consensus       224 ~~~HPFLt~LKYsFQ----t~drlCFVMeyanGGeLf~HLsre--r~FsE~RtRFYGaEIvsAL~YLHs~-~ivYRDlKL  296 (516)
T KOG0690|consen  224 NCRHPFLTSLKYSFQ----TQDRLCFVMEYANGGELFFHLSRE--RVFSEDRTRFYGAEIVSALGYLHSR-NIVYRDLKL  296 (516)
T ss_pred             hccCcHHHHhhhhhc----cCceEEEEEEEccCceEeeehhhh--hcccchhhhhhhHHHHHHhhhhhhC-Ceeeeechh
Confidence            334669999999999    688999999999 99998877665  4599999999999999999999997 999999999


Q ss_pred             CceeeecCCcceeEEeecccccccccccCC-CCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH--HHHHHHH-----
Q psy320           97 ESIFFKADHVYIMTLINIQQATTHQECHDQ-QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI--KMYTTFC-----  168 (202)
Q Consensus        97 ~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~-~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl--~~~~~~~-----  168 (202)
                      +|.|++.++.  +|++|||+++.-...+.. ...||||.|+|||++.      +..|+.++|+|.+  .+|.|.|     
T Consensus       297 ENLlLDkDGH--IKitDFGLCKE~I~~g~t~kTFCGTPEYLAPEVle------DnDYgraVDWWG~GVVMYEMmCGRLPF  368 (516)
T KOG0690|consen  297 ENLLLDKDGH--IKITDFGLCKEEIKYGDTTKTFCGTPEYLAPEVLE------DNDYGRAVDWWGVGVVMYEMMCGRLPF  368 (516)
T ss_pred             hhheeccCCc--eEeeecccchhcccccceeccccCChhhcCchhhc------cccccceeehhhhhHHHHHHHhccCcc
Confidence            9999999998  999999999976554443 3689999999999999      5569999999999  5788888     


Q ss_pred             ------HHHHHHHhcCCCCCCCCCC
Q psy320          169 ------EILEQCRLNHQDFRPDPRV  187 (202)
Q Consensus       169 ------~~~~~~~~~~~~~~~~~~~  187 (202)
                            .+|+.++.++..|+..-..
T Consensus       369 yn~dh~kLFeLIl~ed~kFPr~ls~  393 (516)
T KOG0690|consen  369 YNKDHEKLFELILMEDLKFPRTLSP  393 (516)
T ss_pred             cccchhHHHHHHHhhhccCCccCCH
Confidence                  7888888888888755433

>PTZ00284 protein kinase; Provisional

Probab=99.94  E-value=2.8e-26  Score=189.20  Aligned_cols=160  Identities=19%  Similarity=0.248  Sum_probs=124.6

Q ss_pred             HHHHHHHHHHHhcC---CCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKH---PSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         6 ~~~e~~~l~~l~~~---~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ...|+++++.++..   .|.+++.+.++|..   ...+.|+||++++++|.+++.+.  +.+++..++.++.|++.||.|
T Consensus       172 ~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~~---~~~~~~iv~~~~g~~l~~~l~~~--~~l~~~~~~~i~~qi~~aL~y  246 (467)
T PTZ00284        172 AKIEIQFMEKVRQADPADRFPLMKIQRYFQN---ETGHMCIVMPKYGPCLLDWIMKH--GPFSHRHLAQIIFQTGVALDY  246 (467)
T ss_pred             HHHHHHHHHHHhhcCcccCcceeeeEEEEEc---CCceEEEEEeccCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHH
Confidence            45678888877421   14579999999874   34589999999999999988765  359999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCc--------------ceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhcc
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHV--------------YIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQ  148 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~--------------~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~  148 (202)
                      ||+++||+||||||+|||++.++.              ..+||+|||.+....  .......+|+.|+|||++...    
T Consensus       247 LH~~~gIiHrDlKP~NILl~~~~~~~~~~~~~~~~~~~~~vkl~DfG~~~~~~--~~~~~~~gt~~Y~APE~~~~~----  320 (467)
T PTZ00284        247 FHTELHLMHTDLKPENILMETSDTVVDPVTNRALPPDPCRVRICDLGGCCDER--HSRTAIVSTRHYRSPEVVLGL----  320 (467)
T ss_pred             HHhcCCeecCCCCHHHEEEecCCcccccccccccCCCCceEEECCCCccccCc--cccccccCCccccCcHHhhcC----
Confidence            997459999999999999987542              248999999876432  222345789999999999843    


Q ss_pred             CCCCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCCC
Q psy320          149 DFRLDPRVDPTSIKMYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       149 ~~~~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                        .++.++|+||+|+.      +..+..|.++|...
T Consensus       321 --~~~~~~DiwSlGvi------l~elltG~~pf~~~  348 (467)
T PTZ00284        321 --GWMYSTDMWSMGCI------IYELYTGKLLYDTH  348 (467)
T ss_pred             --CCCcHHHHHHHHHH------HHHHHhCCCCCCCC
Confidence              37889999999973      22455588887543

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.94  E-value=2.2e-26  Score=184.79  Aligned_cols=160  Identities=23%  Similarity=0.266  Sum_probs=124.2

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecC-CceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGI-NGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~-~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++.+ +|+  ||+++++++..... .....|+|+||+.++|.+.+...  +.+++..++.++.|++.||.||
T Consensus        45 ~~~~E~~~l~~l-~h~--niv~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~--~~l~~~~~~~~~~qi~~aL~~L  119 (372)
T cd07853          45 RVFRELKMLCFF-KHD--NVLSALDILQPPHIDPFEEIYVVTELMQSDLHKIIVSP--QPLSSDHVKVFLYQILRGLKYL  119 (372)
T ss_pred             HHHHHHHHHHhC-CCC--CcCCHhheecCCCccccceEEEEeeccccCHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHH
Confidence            355788888888 455  99999999984221 11378999999988898887654  4599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC--CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD--QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~--~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      |+. |++||||||+|||++.++.  ++|+|||.++.......  .....++..|+|||.+..     ...++.++|+||+
T Consensus       120 H~~-~ivH~dlkp~Nili~~~~~--~kL~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~-----~~~~~~~~Diwsl  191 (372)
T cd07853         120 HSA-GILHRDIKPGNLLVNSNCV--LKICDFGLARVEEPDESKHMTQEVVTQYYRAPEILMG-----SRHYTSAVDIWSV  191 (372)
T ss_pred             HhC-CeeCCCCChHHEEECCCCC--EEeccccceeecccCccccCCCCCcCCCcCCHHHHcC-----CCCCCcHHHHHhH
Confidence            996 9999999999999998876  99999999986543221  123357888999999873     2336778999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCC
Q psy320          162 KMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      |+.      +..+..|.++|..
T Consensus       192 G~i------l~el~~g~~pf~~  207 (372)
T cd07853         192 GCI------FAELLGRRILFQA  207 (372)
T ss_pred             HHH------HHHHHcCCCCCCC
Confidence            973      3355567777754

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.94  E-value=3e-26  Score=178.01  Aligned_cols=143  Identities=14%  Similarity=0.118  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC--------------CCCCCHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK--------------FQPAPLVVA   69 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~--------------~~~~~~~~~   69 (202)
                      .+.+|++.++++ +|+  ||+++++++.    .+...++||||+ +++|.+++....              .+.+++..+
T Consensus        53 ~~~~e~~~l~~l-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (291)
T cd05094          53 DFQREAELLTNL-QHE--HIVKFYGVCG----DGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQM  125 (291)
T ss_pred             HHHHHHHHHhcC-CCC--CcceEEEEEc----cCCceEEEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHH
Confidence            456788888877 455  9999999998    566899999999 999999997643              234889999


Q ss_pred             HHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC---CCCCCCCccchhhHHHHhhhh
Q psy320           70 KIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD---QQSSSKTKSKIFCEILEQCRL  146 (202)
Q Consensus        70 ~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~ape~~~~~~~  146 (202)
                      +.++.|++.|+.|||++ |++|+||||+||+++.++.  ++|+|||.+........   .....++..|++||.+..   
T Consensus       126 ~~i~~~i~~al~~lH~~-~i~H~dlkp~Nil~~~~~~--~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~---  199 (291)
T cd05094         126 LHIASQIASGMVYLASQ-HFVHRDLATRNCLVGANLL--VKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMY---  199 (291)
T ss_pred             HHHHHHHHHHHHHHHhC-CeeecccCcceEEEccCCc--EEECCCCcccccCCCceeecCCCCCcceeecChHHhcc---
Confidence            99999999999999996 9999999999999998776  99999999876543221   112345678999998873   


Q ss_pred             ccCCCCCCCcchhhHHH
Q psy320          147 NQDFRLDPRVDPTSIKM  163 (202)
Q Consensus       147 ~~~~~~~~~~Diwsl~~  163 (202)
                         ..++.++|+||+|+
T Consensus       200 ---~~~~~~~Di~slG~  213 (291)
T cd05094         200 ---RKFTTESDVWSFGV  213 (291)
T ss_pred             ---CCCCchhhHHHHHH
Confidence               33777999999985

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>KOG0608|consensus

Probab=99.94  E-value=2.3e-26  Score=186.79  Aligned_cols=153  Identities=20%  Similarity=0.268  Sum_probs=126.6

Q ss_pred             HHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhC
Q psy320            9 LIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKH   87 (202)
Q Consensus         9 e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~   87 (202)
                      |-.+|... +.+  -||+|+-.|+    +.+.+|+||+|+ ||++-.++.+.+-  |++..+++++.++.+|+++.|.. 
T Consensus       679 ERDILAEA-Dn~--WVVrLyySFQ----DkdnLYFVMdYIPGGDmMSLLIrmgI--FeE~LARFYIAEltcAiesVHkm-  748 (1034)
T KOG0608|consen  679 ERDILAEA-DNE--WVVRLYYSFQ----DKDNLYFVMDYIPGGDMMSLLIRMGI--FEEDLARFYIAELTCAIESVHKM-  748 (1034)
T ss_pred             hhhhHhhc-CCc--ceEEEEEEec----cCCceEEEEeccCCccHHHHHHHhcc--CHHHHHHHHHHHHHHHHHHHHhc-
Confidence            45555555 555  8999999999    688999999999 9999999988854  99999999999999999999995 


Q ss_pred             CccccCCCCCceeeecCCcceeEEeecccccccccccCC---------C-------------------------------
Q psy320           88 NLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ---------Q-------------------------------  127 (202)
Q Consensus        88 ~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~---------~-------------------------------  127 (202)
                      |++||||||+|||++.+|.  +||+|||++.-+-..+..         +                               
T Consensus       749 GFIHRDiKPDNILIDrdGH--IKLTDFGLCTGfRWTHdskYYq~gdH~RqDSmep~~e~~d~~~~lkvL~~ra~~~h~r~  826 (1034)
T KOG0608|consen  749 GFIHRDIKPDNILIDRDGH--IKLTDFGLCTGFRWTHDSKYYQEGDHHRQDSMEPSPEWADISKCLKVLERRAMRQHQRI  826 (1034)
T ss_pred             cceecccCccceEEccCCc--eeeeeccccccceeccccccccCCCccccccCCCchhhccccccchHHHHHHHhhhhhh
Confidence            9999999999999999998  999999998854221100         0                               


Q ss_pred             ---CCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy320          128 ---SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLNHQDFRPDP  185 (202)
Q Consensus       128 ---~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~~~~  185 (202)
                         ...||+.|+|||++.      +..|+..+|+||.|+      ++..++.|+++|-.+.
T Consensus       827 ~ahslvgt~nyiapevl~------r~g~~q~cdwws~gv------il~em~~g~~pf~~~t  875 (1034)
T KOG0608|consen  827 LAHSLVGTPNYIAPEVLA------RTGYTQLCDWWSVGV------ILYEMLVGQPPFLADT  875 (1034)
T ss_pred             hhhhhcCCCcccChHHhc------ccCccccchhhHhhH------HHHHHhhCCCCccCCC
Confidence               117999999999999      445888999999987      3346677999997543

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.94  E-value=3.1e-26  Score=184.07  Aligned_cols=144  Identities=15%  Similarity=0.141  Sum_probs=115.5

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC-----------------------
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK-----------------------   60 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~-----------------------   60 (202)
                      ...+|++++..+.+||  ||++++++|.    .+...++||||+ +|+|.+++....                       
T Consensus        84 ~~~~Ei~il~~l~~Hp--nIv~l~~~~~----~~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (375)
T cd05104          84 ALMSELKVLSYLGNHI--NIVNLLGACT----VGGPTLVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQ  157 (375)
T ss_pred             HHHHHHHHHHHhcCCc--ceeeeeeeec----cCCcceeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhh
Confidence            3557888888885555  9999999998    566899999999 999999986432                       


Q ss_pred             --------------------------------------------------CCCCCHHHHHHHHHHHHHHHHHHHhhCCcc
Q psy320           61 --------------------------------------------------FQPAPLVVAKIIVNQILEGLNHLHTKHNLV   90 (202)
Q Consensus        61 --------------------------------------------------~~~~~~~~~~~~~~qi~~~l~~lh~~~~iv   90 (202)
                                                                        ...+++..+..++.|++.||.|||+. |++
T Consensus       158 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~-~iv  236 (375)
T cd05104         158 REMSCDSLNEYMDMKPGVSYVVPTKADKRRSVRSGSYIDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLASK-NCI  236 (375)
T ss_pred             hcccchhhhhhhhcCCCcccccccccccccccccceecccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC-Cee
Confidence                                                              12467888999999999999999995 999


Q ss_pred             ccCCCCCceeeecCCcceeEEeecccccccccccCCC---CCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           91 HTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ---SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        91 H~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~---~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      ||||||+|||++.++.  ++|+|||.++.........   ...++..|++||.+..      ..++.++|+||+|+
T Consensus       237 H~Dlkp~Nill~~~~~--~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~sDi~slG~  304 (375)
T cd05104         237 HRDLAARNILLTHGRI--TKICDFGLARDIRNDSNYVVKGNARLPVKWMAPESIFN------CVYTFESDVWSYGI  304 (375)
T ss_pred             ccCCchhhEEEECCCc--EEEecCccceeccCcccccccCCCCCCcceeChhHhcC------CCCCCCCCHHHHHH
Confidence            9999999999987765  9999999998664322111   1234557999999873      33778999999986

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.94  E-value=2.3e-26  Score=188.55  Aligned_cols=142  Identities=21%  Similarity=0.287  Sum_probs=118.4

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      ..+|+++++++ +|+  ||+++++++..    +...|+||+++.++|.+++.... +.+++..++.++.|++.||.|||+
T Consensus       207 ~~~E~~iL~~L-~Hp--nIv~l~~~~~~----~~~~~lv~e~~~~~L~~~l~~~~-~~l~~~~~~~i~~qi~~aL~yLH~  278 (461)
T PHA03211        207 SVHEARLLRRL-SHP--AVLALLDVRVV----GGLTCLVLPKYRSDLYTYLGARL-RPLGLAQVTAVARQLLSAIDYIHG  278 (461)
T ss_pred             HHHHHHHHHHC-CCC--CCCcEEEEEEE----CCEEEEEEEccCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            45799999999 555  99999999884    56899999999889988886543 359999999999999999999999


Q ss_pred             hCCccccCCCCCceeeecCCcceeEEeecccccccccccC---CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           86 KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD---QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      + ||+||||||+|||++.++.  ++|+|||+++.......   .....||..|++||++..      ..++.++|+||+|
T Consensus       279 ~-gIvHrDLKP~NILl~~~~~--vkL~DFGla~~~~~~~~~~~~~~~~GT~~Y~APE~~~~------~~~~~~sDvwSlG  349 (461)
T PHA03211        279 E-GIIHRDIKTENVLVNGPED--ICLGDFGAACFARGSWSTPFHYGIAGTVDTNAPEVLAG------DPYTPSVDIWSAG  349 (461)
T ss_pred             C-CEEECcCCHHHEEECCCCC--EEEcccCCceecccccccccccccCCCcCCcCHHHHcC------CCCCchHHHHHHH
Confidence            6 9999999999999988776  99999999986543221   113468999999999973      3478899999998


Q ss_pred             HH
Q psy320          163 MY  164 (202)
Q Consensus       163 ~~  164 (202)
                      +.
T Consensus       350 vi  351 (461)
T PHA03211        350 LV  351 (461)
T ss_pred             HH
Confidence            63

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.94  E-value=9.6e-26  Score=174.36  Aligned_cols=157  Identities=17%  Similarity=0.223  Sum_probs=123.8

Q ss_pred             HHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            7 TNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         7 ~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      .+|...++.+....|+||+.+++.+.    .++..++||||+ +++|.+++...  +.+++..+..++.|++.||.|||+
T Consensus        42 ~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~i~~~--~~l~~~~~~~i~~qi~~al~~lH~  115 (279)
T cd05633          42 LNERIMLSLVSTGDCPFIVCMTYAFH----TPDKLCFILDLMNGGDLHYHLSQH--GVFSEKEMRFYATEIILGLEHMHN  115 (279)
T ss_pred             HHHHHHHHHHhhCCCCcEeEEEEEEe----cCCeEEEEEecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            44555555554344679999999998    566899999999 89999988765  349999999999999999999999


Q ss_pred             hCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHH
Q psy320           86 KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYT  165 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~  165 (202)
                      . +++|+||||+||+++.++.  ++++|||.+...... ......++..|++||.+..     +..++.++|+||+|+. 
T Consensus       116 ~-~ivH~dikp~Nil~~~~~~--~~l~dfg~~~~~~~~-~~~~~~~~~~y~aPE~~~~-----~~~~~~~~Di~slG~~-  185 (279)
T cd05633         116 R-FVVYRDLKPANILLDEHGH--VRISDLGLACDFSKK-KPHASVGTHGYMAPEVLQK-----GTAYDSSADWFSLGCM-  185 (279)
T ss_pred             C-CcCCCCCCHHHEEECCCCC--EEEccCCcceecccc-CccCcCCCcCccCHHHhcC-----CCCCCchhhhHHHHHH-
Confidence            6 9999999999999988776  999999998765322 2223568889999999752     2336779999999863 


Q ss_pred             HHHHHHHHHHhcCCCCCCC
Q psy320          166 TFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~  184 (202)
                           +..+..|..+|...
T Consensus       186 -----l~~l~~g~~pf~~~  199 (279)
T cd05633         186 -----LFKLLRGHSPFRQH  199 (279)
T ss_pred             -----HHHHHhCCCCcCCC
Confidence                 23555688887643

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.94  E-value=8.7e-26  Score=171.89  Aligned_cols=157  Identities=20%  Similarity=0.259  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++.+ +||  ||+++++.+.    .....|+||||+ +++|.+++.......++...+..++.|++.||.||
T Consensus        45 ~~~~e~~~l~~l-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~l  117 (256)
T cd08529          45 EAIDEARVLAKL-DSS--YIIRYYESFL----DKGKLNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHL  117 (256)
T ss_pred             HHHHHHHHHHhc-CCC--Ceehheeeec----cCCEEEEEEEeCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            345677777777 455  9999999998    567999999999 99999999876556699999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC-CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD-QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~-~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |+. |++|+||+|+||+++.++.  ++|+|||.+........ .....+++.|++||....      ..++.++|+||+|
T Consensus       118 H~~-~i~h~dl~~~nili~~~~~--~~l~df~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~Di~slG  188 (256)
T cd08529         118 HSK-KILHRDIKSLNLFLDAYDN--VKIGDLGVAKLLSDNTNFANTIVGTPYYLSPELCED------KPYNEKSDVWALG  188 (256)
T ss_pred             HHC-CcccCCCCcceEEEeCCCC--EEEcccccceeccCccchhhccccCccccCHHHhcC------CCCCCccchHHHH
Confidence            996 9999999999999998776  99999999887653322 223467888999999873      3367799999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +.      +..+..|..+|..
T Consensus       189 ~i------l~~l~~g~~p~~~  203 (256)
T cd08529         189 VV------LYECCTGKHPFDA  203 (256)
T ss_pred             HH------HHHHHhCCCCCCC
Confidence            63      2244457777653

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.94  E-value=6.2e-26  Score=177.76  Aligned_cols=154  Identities=18%  Similarity=0.219  Sum_probs=124.5

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++++ +||  ||+++++.|.    .+...|+||||+ +++|.+++.+.  +.+++..+..++.|++.||.||
T Consensus        45 ~~~~E~~~l~~l-~h~--~iv~~~~~~~----~~~~~~lv~ey~~~~~L~~~l~~~--~~~~~~~~~~~~~~i~~~l~~l  115 (308)
T cd06615          45 QIIRELKVLHEC-NSP--YIVGFYGAFY----SDGEISICMEHMDGGSLDQVLKKA--GRIPENILGKISIAVLRGLTYL  115 (308)
T ss_pred             HHHHHHHHHHhC-CCC--CCCeEEEEEe----eCCEEEEEeeccCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHH
Confidence            355788888888 555  9999999998    466999999999 89999999776  4599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |++++++|+||+|+||+++.++.  ++++|||.+...... ......++..|++||.+.+.      .++.++|+||+|+
T Consensus       116 H~~~~i~H~dl~p~nil~~~~~~--~~l~dfg~~~~~~~~-~~~~~~~~~~~~aPE~~~~~------~~~~~~DiwslG~  186 (308)
T cd06615         116 REKHKIMHRDVKPSNILVNSRGE--IKLCDFGVSGQLIDS-MANSFVGTRSYMSPERLQGT------HYTVQSDIWSLGL  186 (308)
T ss_pred             HhhCCEEECCCChHHEEEecCCc--EEEccCCCccccccc-ccccCCCCcCccChhHhcCC------CCCccchHHHHHH
Confidence            97459999999999999998776  999999998765322 22345678899999988633      3677999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~  182 (202)
                      ..      ..+..|..++.
T Consensus       187 ~l------~~l~~g~~p~~  199 (308)
T cd06615         187 SL------VEMAIGRYPIP  199 (308)
T ss_pred             HH------HHHHhCCCCCC
Confidence            32      24445776664

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.94  E-value=5e-26  Score=174.25  Aligned_cols=142  Identities=18%  Similarity=0.205  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      +.+|++.++.+ +|+  ||+++++++.    .....+++|||+ +++|.+++.......+++..++.++.|++.||.|||
T Consensus        49 ~~~e~~~l~~l-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH  121 (263)
T cd05052          49 FLKEAAVMKEI-KHP--NLVQLLGVCT----REPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLE  121 (263)
T ss_pred             HHHHHHHHHhC-CCC--ChhheEEEEc----CCCCcEEEEEeCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            45788888888 455  9999999988    456889999999 899999987655456899999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC--CCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ--SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~--~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      ++ |++|+||||+||+++.++.  ++|+|||.+..........  ....+..|++||.+...      .++.++|+||+|
T Consensus       122 ~~-~i~H~dlkp~nil~~~~~~--~kl~df~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~------~~~~~~Dv~slG  192 (263)
T cd05052         122 KK-NFIHRDLAARNCLVGENHL--VKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYN------KFSIKSDVWAFG  192 (263)
T ss_pred             hC-CEeecccCcceEEEcCCCc--EEeCCCccccccccceeeccCCCCCccccCCHHHhccC------CCCchhHHHHHH
Confidence            96 9999999999999988776  9999999998764322111  12335579999988733      367789999998


Q ss_pred             H
Q psy320          163 M  163 (202)
Q Consensus       163 ~  163 (202)
                      +
T Consensus       193 ~  193 (263)
T cd05052         193 V  193 (263)
T ss_pred             H
Confidence            5

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.94  E-value=5e-26  Score=196.91  Aligned_cols=163  Identities=17%  Similarity=0.156  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK--FQPAPLVVAKIIVNQILEGLN   81 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~--~~~~~~~~~~~~~~qi~~~l~   81 (202)
                      .+.+|+.+++++ +||  ||++++++|...  ....+|+||||+ +++|.+++....  .+.+++..++.++.||+.||.
T Consensus        58 ~~~~EI~IL~~L-~HP--NIVrl~d~f~de--~~~~lyIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALa  132 (1021)
T PTZ00266         58 QLVIEVNVMREL-KHK--NIVRYIDRFLNK--ANQKLYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALA  132 (1021)
T ss_pred             HHHHHHHHHHHc-CCC--CcCeEEEEEEec--CCCEEEEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHH
Confidence            356788888888 455  999999998742  245899999999 899999987532  245999999999999999999


Q ss_pred             HHHhhC------CccccCCCCCceeeecC---------------CcceeEEeecccccccccccCCCCCCCCccchhhHH
Q psy320           82 HLHTKH------NLVHTSIKPESIFFKAD---------------HVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEI  140 (202)
Q Consensus        82 ~lh~~~------~ivH~dl~p~nil~~~~---------------~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~  140 (202)
                      |||+..      +|+|+||||+|||++.+               +...++|+|||++.............+++.|+|||+
T Consensus       133 YLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i~~~~~n~ng~~iVKLsDFGlAr~l~~~s~~~s~vGTp~YmAPEv  212 (1021)
T PTZ00266        133 YCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKITAQANNLNGRPIAKIGDFGLSKNIGIESMAHSCVGTPYYWSPEL  212 (1021)
T ss_pred             HHHhcccccccCCceeccCcHHHeEeecCccccccccccccccCCCCceEEccCCccccccccccccccCCCccccCHHH
Confidence            999830      49999999999999753               222389999999987654333344578999999999


Q ss_pred             HHhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCCCC
Q psy320          141 LEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       141 ~~~~~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +....    ..++.++|+||||+..+      .+..|..+|.
T Consensus       213 L~ge~----~~~s~KSDVWSLG~ILY------ELLTGk~PF~  244 (1021)
T PTZ00266        213 LLHET----KSYDDKSDMWALGCIIY------ELCSGKTPFH  244 (1021)
T ss_pred             HhccC----CCCCchhHHHHHHHHHH------HHHHCCCCCC
Confidence            86322    33677999999986322      4444777664

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.94  E-value=5.3e-26  Score=178.48  Aligned_cols=162  Identities=19%  Similarity=0.184  Sum_probs=123.9

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcC-------CCCCCHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQK-------FQPAPLVVAKIIVNQIL   77 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~-------~~~~~~~~~~~~~~qi~   77 (202)
                      ...+|+++++++ +||  ||++++++|...  .....|+|+||++++|.+++....       ...+++..++.++.|++
T Consensus        44 ~~~~E~~~l~~l-~h~--niv~~~~~~~~~--~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~  118 (317)
T cd07867          44 SACREIALLREL-KHP--NVIALQKVFLSH--SDRKVWLLFDYAEHDLWHIIKFHRASKANKKPMQLPRSMVKSLLYQIL  118 (317)
T ss_pred             HHHHHHHHHHhC-CCC--CeeeEEEEEecc--CCCeEEEEEeeeCCcHHHHHHhhhccccCCCCccCCHHHHHHHHHHHH
Confidence            456788888888 455  999999998642  345889999999889988875321       12488899999999999


Q ss_pred             HHHHHHHhhCCccccCCCCCceeeecCC--cceeEEeecccccccccccCC----CCCCCCccchhhHHHHhhhhccCCC
Q psy320           78 EGLNHLHTKHNLVHTSIKPESIFFKADH--VYIMTLINIQQATTHQECHDQ----QSSSKTKSKIFCEILEQCRLNQDFR  151 (202)
Q Consensus        78 ~~l~~lh~~~~ivH~dl~p~nil~~~~~--~~~~~l~Dfg~a~~~~~~~~~----~~~~~~~~~~ape~~~~~~~~~~~~  151 (202)
                      .||.|||+. |++||||||+||++..++  ...++|+|||.++........    ....+++.|+|||.+..     ...
T Consensus       119 ~aL~~lH~~-~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~-----~~~  192 (317)
T cd07867         119 DGIHYLHAN-WVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLG-----ARH  192 (317)
T ss_pred             HHHHHHHhC-CEEcCCCCHHHEEEccCCCCCCcEEEeeccceeccCCCcccccccCcceecccccCcHHhcC-----CCc
Confidence            999999996 999999999999995321  234999999999876432211    23467889999999863     233


Q ss_pred             CCCCcchhhHHHHHHHHHHHHHHHhcCCCCCC
Q psy320          152 LDPRVDPTSIKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       152 ~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      ++.++|+||+|+.      +..+..|.++|..
T Consensus       193 ~~~~~DiwSlG~i------l~el~tg~~~f~~  218 (317)
T cd07867         193 YTKAIDIWAIGCI------FAELLTSEPIFHC  218 (317)
T ss_pred             cCcHHHHHhHHHH------HHHHHhCCCCccc
Confidence            6778999999973      3355568888764

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.94  E-value=4.8e-26  Score=178.00  Aligned_cols=144  Identities=12%  Similarity=0.161  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC--------------CCCCCHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK--------------FQPAPLVVA   69 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~--------------~~~~~~~~~   69 (202)
                      .+.+|++++.++.+|+  ||+++++++.    .....++||||+ +++|.+++.+..              ...+++..+
T Consensus        53 ~~~~Ei~~l~~l~~h~--~iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~  126 (303)
T cd05088          53 DFAGELEVLCKLGHHP--NIINLLGACE----HRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQL  126 (303)
T ss_pred             HHHHHHHHHHHhcCCC--CcceEEEEEC----CCCCceEEEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHH
Confidence            3456888888885566  9999999998    566899999999 899999997542              124789999


Q ss_pred             HHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccC
Q psy320           70 KIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQD  149 (202)
Q Consensus        70 ~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~  149 (202)
                      +.++.|++.|+.|||++ |++||||||+|||++.++.  ++|+|||.+..............+..|++||....      
T Consensus       127 ~~~~~qi~~al~~LH~~-gi~H~dlkp~Nili~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~------  197 (303)
T cd05088         127 LHFAADVARGMDYLSQK-QFIHRDLAARNILVGENYV--AKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNY------  197 (303)
T ss_pred             HHHHHHHHHHHHHHHhC-CccccccchheEEecCCCc--EEeCccccCcccchhhhcccCCCcccccCHHHHhc------
Confidence            99999999999999996 9999999999999998776  99999999864321111112233557999998863      


Q ss_pred             CCCCCCcchhhHHH
Q psy320          150 FRLDPRVDPTSIKM  163 (202)
Q Consensus       150 ~~~~~~~Diwsl~~  163 (202)
                      ..++.++|+||+|+
T Consensus       198 ~~~~~~~Di~slG~  211 (303)
T cd05088         198 SVYTTNSDVWSYGV  211 (303)
T ss_pred             cCCcccccchhhhh
Confidence            33678999999985

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.94  E-value=6.7e-26  Score=178.93  Aligned_cols=158  Identities=17%  Similarity=0.220  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++.+ +||  ||++++++|.    .....|+||||+ +++|.+++.....+.+++..++.++.|++.||.||
T Consensus        45 ~~~~e~~~l~~l-~hp--niv~~~~~~~----~~~~~~lv~e~~~~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~L  117 (327)
T cd08227          45 FLQGELHVSKLF-NHP--NIVPYRATFI----ADNELWVVTSFMAYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYI  117 (327)
T ss_pred             HHHHHHHHHHhc-CCC--CeeeEEEEEE----ECCEEEEEEeccCCCcHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHH
Confidence            445677777777 555  9999999998    466899999999 89999999765545699999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC--------CCCCCCCccchhhHHHHhhhhccCCCCCCC
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD--------QQSSSKTKSKIFCEILEQCRLNQDFRLDPR  155 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~--------~~~~~~~~~~~ape~~~~~~~~~~~~~~~~  155 (202)
                      |+. |++||||||+||+++.++.  ++++||+.+......+.        .....++..|+|||.+....    ..++.+
T Consensus       118 H~~-~iiH~dlkp~Nil~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~----~~~~~~  190 (327)
T cd08227         118 HHM-GYVHRSVKASHILISVDGK--VYLSGLRSNLSMINHGQRLRVVHDFPKYSVKVLPWLSPEVLQQNL----QGYDAK  190 (327)
T ss_pred             HHC-CEecCCCChhhEEEecCCc--EEEcccchhhccccccccccccccccccccceecccChHHhhccc----CCCCch
Confidence            995 9999999999999998876  99999986554322111        11234566799999987321    346789


Q ss_pred             cchhhHHHHHHHHHHHHHHHhcCCCCC
Q psy320          156 VDPTSIKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       156 ~Diwsl~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +|+||+|+..      ..+..|..+|.
T Consensus       191 ~DiwslG~il------~el~~g~~pf~  211 (327)
T cd08227         191 SDIYSVGITA------CELANGHVPFK  211 (327)
T ss_pred             hhHHHHHHHH------HHHHHCCCCCC
Confidence            9999998632      24455777764

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>KOG0574|consensus

Probab=99.94  E-value=3.7e-27  Score=176.98  Aligned_cols=152  Identities=18%  Similarity=0.256  Sum_probs=128.0

Q ss_pred             HHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q psy320            8 NLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTK   86 (202)
Q Consensus         8 ~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~   86 (202)
                      +|+.++++. +  +++||++|+.+.    ....+|+||||| .||..+.++... +.++++.+..+++..+.||+|||..
T Consensus        77 KEISIMQQC-~--S~yVVKYYGSYF----K~sDLWIVMEYCGAGSiSDI~R~R~-K~L~E~EIs~iL~~TLKGL~YLH~~  148 (502)
T KOG0574|consen   77 KEISIMQQC-K--SKYVVKYYGSYF----KHSDLWIVMEYCGAGSISDIMRARR-KPLSEQEISAVLRDTLKGLQYLHDL  148 (502)
T ss_pred             HHHHHHHHc-C--Cchhhhhhhhhc----cCCceEeehhhcCCCcHHHHHHHhc-CCccHHHHHHHHHHHHhHHHHHHHH
Confidence            456666666 3  459999999987    567899999999 899999987654 5699999999999999999999995


Q ss_pred             CCccccCCCCCceeeecCCcceeEEeecccccccccccCCC-CCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHH
Q psy320           87 HNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ-SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYT  165 (202)
Q Consensus        87 ~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~-~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~  165 (202)
                       .=+|||||..|||++.++.  .||+|||.|-..+..-..+ ...||+.|+|||++.-.      .|+.++||||||+-.
T Consensus       149 -~KIHRDIKAGNILLNT~G~--AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI~EI------GY~~~ADIWSLGITa  219 (502)
T KOG0574|consen  149 -KKIHRDIKAGNILLNTDGI--AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIEEI------GYDTKADIWSLGITA  219 (502)
T ss_pred             -HHHHhhcccccEEEcccch--hhhhhccccchhhhhHHhhCccccCcccccHHHHHHh------ccchhhhHhhhcchh
Confidence             8899999999999999887  9999999998776533333 56899999999999944      489999999999844


Q ss_pred             HHHHHHHHHHhcCCCCC
Q psy320          166 TFCEILEQCRLNHQDFR  182 (202)
Q Consensus       166 ~~~~~~~~~~~~~~~~~  182 (202)
                      .      .+..|+|++.
T Consensus       220 I------EMAEG~PPYs  230 (502)
T KOG0574|consen  220 I------EMAEGRPPYS  230 (502)
T ss_pred             h------hhhcCCCCcc
Confidence            4      7777888874

>KOG0584|consensus

Probab=99.94  E-value=1.9e-26  Score=186.59  Aligned_cols=162  Identities=20%  Similarity=0.284  Sum_probs=131.4

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +++..|+.+|+.| +||  ||+++++++....  .+.+.+|+|.+ .|+|..|+++.  +++....++.|++||+.||.|
T Consensus        86 eR~~~Ev~lLKsL-~H~--NIirfy~SW~d~~--n~~in~iTEL~TSGtLr~Y~kk~--~~vn~kaik~W~RQILkGL~y  158 (632)
T KOG0584|consen   86 ERLYSEVHLLKSL-KHP--NIIRFYDSWVDTD--NKTINFITELFTSGTLREYRKKH--RRVNIKAIKSWCRQILKGLVY  158 (632)
T ss_pred             HHHHHHHHHHccC-CCC--ceeeeeeheecCC--CceeeeeeecccCCcHHHHHHHh--ccCCHHHHHHHHHHHHHHhhh
Confidence            4566788888888 455  9999999998432  46789999999 99999999998  459999999999999999999


Q ss_pred             HHhh-CCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           83 LHTK-HNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        83 lh~~-~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      ||+. .-|+|||||=+|||++... +.|||+|+|+|......... .-.|||.|||||++.       ..|+..+||||+
T Consensus       159 LHs~~PPIIHRDLKCDNIFinG~~-G~VKIGDLGLAtl~r~s~ak-svIGTPEFMAPEmYE-------E~YnE~VDVYaF  229 (632)
T KOG0584|consen  159 LHSQDPPIIHRDLKCDNIFVNGNL-GEVKIGDLGLATLLRKSHAK-SVIGTPEFMAPEMYE-------ENYNELVDVYAF  229 (632)
T ss_pred             hhcCCCCccccccccceEEEcCCc-CceeecchhHHHHhhccccc-eeccCccccChHHHh-------hhcchhhhhhhh
Confidence            9985 2499999999999998763 35999999999987643333 368999999999998       338889999999


Q ss_pred             HHH--HHHH------------HHHHHHHhcCCCC
Q psy320          162 KMY--TTFC------------EILEQCRLNHQDF  181 (202)
Q Consensus       162 ~~~--~~~~------------~~~~~~~~~~~~~  181 (202)
                      ||.  .|.+            +++.+...|-+|.
T Consensus       230 GMCmLEMvT~eYPYsEC~n~AQIYKKV~SGiKP~  263 (632)
T KOG0584|consen  230 GMCMLEMVTSEYPYSECTNPAQIYKKVTSGIKPA  263 (632)
T ss_pred             hHHHHHHHhccCChhhhCCHHHHHHHHHcCCCHH
Confidence            863  3433            6666666665543

>KOG1094|consensus

Probab=99.94  E-value=1.5e-26  Score=186.23  Aligned_cols=150  Identities=17%  Similarity=0.257  Sum_probs=123.0

Q ss_pred             chHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Q psy320            3 TNYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLN   81 (202)
Q Consensus         3 ~~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~   81 (202)
                      ++.+.+|+++|.++ +||  ||+++.++|.    ...-+|+++||+ .|+|.+++.++...-..-.....++.||++||+
T Consensus       579 r~~F~kEIkiLsqL-khP--NIveLvGVC~----~DePicmI~EYmEnGDLnqFl~aheapt~~t~~~vsi~tqiasgma  651 (807)
T KOG1094|consen  579 RNDFLKEIKILSRL-KHP--NIVELLGVCV----QDDPLCMITEYMENGDLNQFLSAHELPTAETAPGVSICTQIASGMA  651 (807)
T ss_pred             HHHHHHHHHHHhcc-CCC--CeeEEEeeee----cCCchHHHHHHHhcCcHHHHHHhccCcccccchhHHHHHHHHHHHH
Confidence            46788999999999 666  9999999999    466899999999 999999999885322344556679999999999


Q ss_pred             HHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC---CCCCCccchhhHHHHhhhhccCCCCCCCcch
Q psy320           82 HLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ---SSSKTKSKIFCEILEQCRLNQDFRLDPRVDP  158 (202)
Q Consensus        82 ~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~---~~~~~~~~~ape~~~~~~~~~~~~~~~~~Di  158 (202)
                      ||.+ +++||||+.+.|+|++.+..  +|++|||.++..-......   ...-...|+|+|.+....      ++.++|+
T Consensus       652 YLes-~nfVHrd~a~rNcLv~~e~~--iKiadfgmsR~lysg~yy~vqgr~vlpiRwmawEsillgk------FttaSDv  722 (807)
T KOG1094|consen  652 YLES-LNFVHRDLATRNCLVDGEFT--IKIADFGMSRNLYSGDYYRVQGRAVLPIRWMAWESILLGK------FTTASDV  722 (807)
T ss_pred             HHHh-hchhhccccccceeecCccc--EEecCcccccccccCCceeeecceeeeeeehhHHHHHhcc------ccchhhh
Confidence            9999 79999999999999998877  9999999999654322222   234556899999999665      8899999


Q ss_pred             hhH--HHHHHHH
Q psy320          159 TSI--KMYTTFC  168 (202)
Q Consensus       159 wsl--~~~~~~~  168 (202)
                      |++  .+|++++
T Consensus       723 WafgvTlwE~~~  734 (807)
T KOG1094|consen  723 WAFGVTLWEVFM  734 (807)
T ss_pred             hhhHHHHHHHHH
Confidence            999  4666654

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.94  E-value=1e-25  Score=173.81  Aligned_cols=157  Identities=21%  Similarity=0.237  Sum_probs=126.8

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      +.+|+++++++ +||  ||+++++.|.    .....|+||||+ +++|.+++.+.....+++..+..++.|++.|+.|||
T Consensus        40 ~~~e~~~l~~l-~~~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH  112 (277)
T cd05577          40 ALNEKKILEKV-SSR--FIVSLAYAFE----TKDDLCLVMTLMNGGDLKYHIYNVGEPGFPEARAIFYAAQIICGLEHLH  112 (277)
T ss_pred             HHHHHHHHHhC-CCC--CEeeeeeEEe----cCCeEEEEEecCCCCcHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            35688888888 455  9999999998    566899999999 899999988765456999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~  164 (202)
                      +. |++|+||+|+||+++.++.  ++|+|||.+.............++..|++||.+...      .++.++|+||+|+.
T Consensus       113 ~~-~i~H~di~p~Nil~~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~y~~PE~~~~~------~~~~~~Di~slG~i  183 (277)
T cd05577         113 QR-RIVYRDLKPENVLLDDHGN--VRISDLGLAVELKGGKKIKGRAGTPGYMAPEVLQGE------VYDFSVDWFALGCT  183 (277)
T ss_pred             hC-CcccCCCCHHHEEECCCCC--EEEccCcchhhhccCCccccccCCCCcCCHHHhcCC------CCCchhhhHHHHHH
Confidence            95 9999999999999998776  999999998765432222334567789999998732      26779999999863


Q ss_pred             HHHHHHHHHHHhcCCCCCCC
Q psy320          165 TTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~  184 (202)
                            +..+..|..+|...
T Consensus       184 ------l~~l~~g~~p~~~~  197 (277)
T cd05577         184 ------LYEMIAGRSPFRQR  197 (277)
T ss_pred             ------HHHHhhCCCCCCCC
Confidence                  33455588777543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.94  E-value=9.3e-26  Score=174.45  Aligned_cols=158  Identities=21%  Similarity=0.218  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKF-QPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+.+++++ +||  ||+++++++.    .+...|+||||+.++|.+++..... +.+++..++.++.|++.||.||
T Consensus        45 ~~~~e~~~l~~l-~h~--~i~~~~~~~~----~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~l  117 (285)
T cd07861          45 TAIREISLLKEL-QHP--NIVCLQDVLM----QESRLYLIFEFLSMDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFC  117 (285)
T ss_pred             HHHHHHHHHHhc-CCC--CEeeeEEEEe----eCCeEEEEEecCCCCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHH
Confidence            456788888888 455  9999999998    4668999999997789888865442 4689999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC-CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD-QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~-~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |+. |++|+||+|+||+++.++.  ++|+|||.+........ .....+++.|+|||.+..     ...++.++|+||+|
T Consensus       118 H~~-~i~H~dl~p~nil~~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-----~~~~~~~~Dv~slG  189 (285)
T cd07861         118 HSR-RVLHRDLKPQNLLIDNKGV--IKLADFGLARAFGIPVRVYTHEVVTLWYRAPEVLLG-----SPRYSTPVDIWSIG  189 (285)
T ss_pred             HhC-CeeecCCCHHHEEEcCCCc--EEECcccceeecCCCcccccCCcccccccChHHhcC-----CCCcCcHHHHHHHH
Confidence            995 9999999999999998876  99999999876532211 123356788999998762     22356789999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +.      +..+..|.++|..
T Consensus       190 ~i------l~~l~tg~~~~~~  204 (285)
T cd07861         190 TI------FAEMATKKPLFHG  204 (285)
T ss_pred             HH------HHHHHHCCCCCCC
Confidence            63      2244557777653

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.94  E-value=1.1e-25  Score=171.51  Aligned_cols=142  Identities=20%  Similarity=0.219  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+.+++.+ +|+  ||+++.+.+.    .+...|+|+||+ +++|.+++.....+.+++..++.++.|++.||.+||
T Consensus        45 ~~~e~~~l~~l-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH  117 (255)
T cd08219          45 SRKEAVLLAKM-KHP--NIVAFKESFE----ADGHLYIVMEYCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIH  117 (255)
T ss_pred             HHHHHHHHHhC-CCC--CcceEEEEEE----ECCEEEEEEeeCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            45677777777 455  9999999998    466999999999 899999887655556899999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccC-CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD-QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~-~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      +. |++|+||+|+||+++.++.  ++++|||.+........ .....++..|+|||.+...      .++.++|+||+|+
T Consensus       118 ~~-~i~H~dl~p~nili~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~------~~~~~~Dv~slG~  188 (255)
T cd08219         118 EK-RVLHRDIKSKNIFLTQNGK--VKLGDFGSARLLTSPGAYACTYVGTPYYVPPEIWENM------PYNNKSDIWSLGC  188 (255)
T ss_pred             hC-CcccCCCCcceEEECCCCc--EEEcccCcceeecccccccccccCCccccCHHHHccC------CcCchhhhhhhch
Confidence            95 9999999999999988776  99999999987643322 2234678889999998733      3677999999975

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.94  E-value=8.1e-26  Score=172.58  Aligned_cols=142  Identities=15%  Similarity=0.199  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+..++++ +||  ||+++++++.    .....++||||+ +++|.+++.... ..+++..++.++.|++.||.||
T Consensus        45 ~~~~e~~~l~~l-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~l~~~i~~~~-~~~~~~~~~~~~~~i~~~l~~l  116 (256)
T cd05113          45 EFIEEAKVMMKL-SHE--KLVQLYGVCT----KQRPIYIVTEYMSNGCLLNYLREHG-KRFQPSQLLEMCKDVCEGMAYL  116 (256)
T ss_pred             HHHHHHHHHhcC-CCC--CeeeEEEEEc----cCCCcEEEEEcCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHH
Confidence            356788888887 455  9999999997    455789999999 899999987644 3589999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC--CCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ--QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~--~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      |+. |++|+||+|+||+++.++.  ++|+|||.++........  ....++..|++||.....      .++.++|+||+
T Consensus       117 H~~-~i~H~dl~p~nili~~~~~--~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~------~~~~~~Di~sl  187 (256)
T cd05113         117 ESK-QFIHRDLAARNCLVDDQGC--VKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLLYS------KFSSKSDVWAF  187 (256)
T ss_pred             HhC-CeeccccCcceEEEcCCCC--EEECCCccceecCCCceeecCCCccChhhCCHHHHhcC------cccchhHHHHH
Confidence            996 9999999999999988776  999999998865432211  123355679999999733      36779999999


Q ss_pred             HH
Q psy320          162 KM  163 (202)
Q Consensus       162 ~~  163 (202)
                      |+
T Consensus       188 G~  189 (256)
T cd05113         188 GV  189 (256)
T ss_pred             HH
Confidence            85

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.94  E-value=5.3e-26  Score=180.57  Aligned_cols=156  Identities=21%  Similarity=0.264  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecC--CceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGI--NGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~--~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ..+|+++++.+ +||  ||++++++|.....  .....|+++++++++|.+++..   +++++..++.++.|++.||.||
T Consensus        61 ~~~E~~~l~~l-~h~--~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~l~~~~~~~i~~qi~~aL~~L  134 (343)
T cd07878          61 TYRELRLLKHM-KHE--NVIGLLDVFTPATSIENFNEVYLVTNLMGADLNNIVKC---QKLSDEHVQFLIYQLLRGLKYI  134 (343)
T ss_pred             HHHHHHHHHhc-CCC--chhhhhhhhcccccccccCcEEEEeecCCCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHH
Confidence            45688888888 455  99999999874321  2346899999999999988754   3499999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |+. |++||||||+||+++.++.  +||+|||++.....  ......+++.|+|||.+..     ...++.++|+||+|+
T Consensus       135 H~~-~ivHrdikp~Nil~~~~~~--~kl~Dfg~~~~~~~--~~~~~~~t~~y~aPE~~~~-----~~~~~~~~DiwslG~  204 (343)
T cd07878         135 HSA-GIIHRDLKPSNVAVNEDCE--LRILDFGLARQADD--EMTGYVATRWYRAPEIMLN-----WMHYNQTVDIWSVGC  204 (343)
T ss_pred             HHC-CeecccCChhhEEECCCCC--EEEcCCccceecCC--CcCCccccccccCchHhcC-----CccCCchhhhHhHHH
Confidence            996 9999999999999998877  99999999987542  2223568889999999863     234677999999987


Q ss_pred             HHHHHHHHHHHHhcCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~  183 (202)
                      .      +..+..|..+|..
T Consensus       205 i------l~el~~g~~pf~~  218 (343)
T cd07878         205 I------MAELLKGKALFPG  218 (343)
T ss_pred             H------HHHHHHCCCCCCC
Confidence            3      2245557777753

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.94  E-value=1.1e-25  Score=171.70  Aligned_cols=142  Identities=17%  Similarity=0.240  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+++++.+ +||  ||+++++++.    .....|+||||+ +++|.+++.... +.+++..+..++.|++.|+.||
T Consensus        45 ~~~~e~~~l~~l-~~~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~l  116 (256)
T cd05059          45 DFIEEAKVMMKL-SHP--NLVQLYGVCT----KQRPIFIVTEYMANGCLLNYLRERK-GKLGTEWLLDMCSDVCEAMEYL  116 (256)
T ss_pred             HHHHHHHHHHhC-CCC--CEEEEEEEEc----CCCceEEEEecCCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHH
Confidence            456788888888 455  9999999988    566899999999 899999987654 3589999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC--CCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ--SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~--~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      |+. |++|+||+|+||+++.++.  ++++|||.++.........  ...++..|++||.+...      .++.++|+||+
T Consensus       117 H~~-~i~H~dl~p~ni~i~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~------~~~~~~Di~sl  187 (256)
T cd05059         117 ESN-GFIHRDLAARNCLVGEDNV--VKVSDFGLARYVLDDQYTSSQGTKFPVKWAPPEVFDYS------RFSSKSDVWSF  187 (256)
T ss_pred             HHC-CcccccccHhhEEECCCCc--EEECCcccceecccccccccCCCCCCccccCHHHhccC------CCCchhhHHHH
Confidence            996 9999999999999998776  9999999987654321111  12234579999998743      36779999999


Q ss_pred             HH
Q psy320          162 KM  163 (202)
Q Consensus       162 ~~  163 (202)
                      |+
T Consensus       188 G~  189 (256)
T cd05059         188 GV  189 (256)
T ss_pred             HH
Confidence            85

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.94  E-value=9.2e-26  Score=182.52  Aligned_cols=144  Identities=15%  Similarity=0.159  Sum_probs=115.5

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC-----------------------
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK-----------------------   60 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~-----------------------   60 (202)
                      .+.+|+++++++..||  ||++++++|.    .....|+||||+ +++|.+++....                       
T Consensus        86 ~~~~Ei~~l~~l~~Hp--nIv~l~~~~~----~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (400)
T cd05105          86 ALMSELKIMTHLGPHL--NIVNLLGACT----KSGPIYIITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPA  159 (400)
T ss_pred             HHHHHHHHHHhcCCCC--CeeeEEEEEc----cCCceEEEEEecCCCcHHHHHHHhhhhhhccccccccccccccCCCcc
Confidence            4567888888884455  9999999998    566899999999 999998886431                       


Q ss_pred             -----------------------------------------------------------------------CCCCCHHHH
Q psy320           61 -----------------------------------------------------------------------FQPAPLVVA   69 (202)
Q Consensus        61 -----------------------------------------------------------------------~~~~~~~~~   69 (202)
                                                                                             .+.++...+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~  239 (400)
T cd05105         160 DESTRSYVILSFENKGDYMDMKQADTTQYVPMLEIKEASKYSDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDL  239 (400)
T ss_pred             cccccchhhhhhcccccccccccccccccchhhhhhhhhhhhhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHH
Confidence                                                                                   124777888


Q ss_pred             HHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC---CCCCCCccchhhHHHHhhhh
Q psy320           70 KIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ---QSSSKTKSKIFCEILEQCRL  146 (202)
Q Consensus        70 ~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~---~~~~~~~~~~ape~~~~~~~  146 (202)
                      ..++.|++.||.|||+. +++|+||||+|||++.++.  ++|+|||.++........   ....++..|+|||.+..   
T Consensus       240 ~~~~~qi~~aL~~LH~~-~ivH~dikp~Nill~~~~~--~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~---  313 (400)
T cd05105         240 LSFTYQVARGMEFLASK-NCVHRDLAARNVLLAQGKI--VKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIFD---  313 (400)
T ss_pred             HHHHHHHHHHHHHHHhC-CeeCCCCChHhEEEeCCCE--EEEEeCCcceeccccccccccCCcCCCcceEChhhhcC---
Confidence            99999999999999996 9999999999999988766  999999999865432211   12345678999999873   


Q ss_pred             ccCCCCCCCcchhhHHH
Q psy320          147 NQDFRLDPRVDPTSIKM  163 (202)
Q Consensus       147 ~~~~~~~~~~Diwsl~~  163 (202)
                         ..++.++|+||+|+
T Consensus       314 ---~~~~~~~DiwSlGv  327 (400)
T cd05105         314 ---NLYTTLSDVWSYGI  327 (400)
T ss_pred             ---CCCCchhhHHHHHH
Confidence               33678999999985

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.94  E-value=1.8e-25  Score=175.54  Aligned_cols=143  Identities=13%  Similarity=0.159  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC--------------CCCCCHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK--------------FQPAPLVVAK   70 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~--------------~~~~~~~~~~   70 (202)
                      ..+|+++++++.+||  ||+++++++.    .....|+||||+ +++|.+++....              ...++...+.
T Consensus        64 ~~~E~~~l~~l~~h~--~iv~~~~~~~----~~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~  137 (314)
T cd05099          64 LISEMELMKLIGKHK--NIINLLGVCT----QEGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLV  137 (314)
T ss_pred             HHHHHHHHHhccCCC--CeeeEEEEEc----cCCceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHH
Confidence            446777777774465  9999999998    456899999999 899999997642              1348889999


Q ss_pred             HHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC---CCCCCCccchhhHHHHhhhhc
Q psy320           71 IIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ---QSSSKTKSKIFCEILEQCRLN  147 (202)
Q Consensus        71 ~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~---~~~~~~~~~~ape~~~~~~~~  147 (202)
                      .++.|++.||.|+|++ |++|+||||+||+++.++.  ++|+|||.++........   ....++..|++||.+..    
T Consensus       138 ~~~~qi~~aL~~lH~~-gi~H~dlkp~Nill~~~~~--~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~----  210 (314)
T cd05099         138 SCAYQVARGMEYLESR-RCIHRDLAARNVLVTEDNV--MKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEALFD----  210 (314)
T ss_pred             HHHHHHHHHHHHHHHC-CeeeccccceeEEEcCCCc--EEEccccccccccccccccccccCCCCccccCHHHHcc----
Confidence            9999999999999996 9999999999999988776  999999999876432111   11233457999999873    


Q ss_pred             cCCCCCCCcchhhHHH
Q psy320          148 QDFRLDPRVDPTSIKM  163 (202)
Q Consensus       148 ~~~~~~~~~Diwsl~~  163 (202)
                        ..++.++|+||+|+
T Consensus       211 --~~~~~~~DiwslG~  224 (314)
T cd05099         211 --RVYTHQSDVWSFGI  224 (314)
T ss_pred             --CCcCccchhhHHHH
Confidence              33778999999985

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.94  E-value=1.2e-25  Score=175.41  Aligned_cols=157  Identities=17%  Similarity=0.207  Sum_probs=124.8

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ...+|+..++.+ +||  ||+++++++.    .....++||||+.++|.+++.... ..+++..++.++.|++.||.|||
T Consensus        50 ~~~~E~~~l~~l-~h~--nI~~~~~~~~----~~~~~~lv~e~~~~~l~~~l~~~~-~~~~~~~~~~~~~qi~~aL~~lH  121 (301)
T cd07873          50 TAIREVSLLKDL-KHA--NIVTLHDIIH----TEKSLTLVFEYLDKDLKQYLDDCG-NSINMHNVKLFLFQLLRGLNYCH  121 (301)
T ss_pred             HHHHHHHHHHhc-CCC--CcceEEEEEe----cCCeEEEEEeccccCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHH
Confidence            455788888888 455  9999999998    566899999999889998887653 45899999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      +. |++|+||||+||+++.++.  ++|+|||.+....... ......+++.|++||.+..     ...++.++|+||+|+
T Consensus       122 ~~-~i~H~dlkp~Nil~~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~-----~~~~~~~~Dv~slG~  193 (301)
T cd07873         122 RR-KVLHRDLKPQNLLINERGE--LKLADFGLARAKSIPTKTYSNEVVTLWYRPPDILLG-----STDYSTQIDMWGVGC  193 (301)
T ss_pred             hC-CeeCCCCCHHHEEECCCCc--EEECcCcchhccCCCCCcccccceeecccCcHHHhC-----CCCCccHHHHHHHHH
Confidence            96 9999999999999998876  9999999987653222 1123456788999999862     233567899999986


Q ss_pred             HHHHHHHHHHHHhcCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~  183 (202)
                      .      +..+..|.++|..
T Consensus       194 ~------l~el~tg~~~f~~  207 (301)
T cd07873         194 I------FYEMSTGRPLFPG  207 (301)
T ss_pred             H------HHHHHhCCCCCCC
Confidence            3      2245557777753

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>KOG1151|consensus

Probab=99.94  E-value=1.2e-26  Score=182.11  Aligned_cols=180  Identities=20%  Similarity=0.271  Sum_probs=143.0

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +.+++|.++.+.| +||  -||++|++|..   +...+|-|+||| |.+|.-+++..  +.+++..++.|+.||+.||.|
T Consensus       512 KHAcREyrIHKeL-DHp--RIVKlYDyfsl---DtdsFCTVLEYceGNDLDFYLKQh--klmSEKEARSIiMQiVnAL~Y  583 (775)
T KOG1151|consen  512 KHACREYRIHKEL-DHP--RIVKLYDYFSL---DTDSFCTVLEYCEGNDLDFYLKQH--KLMSEKEARSIIMQIVNALKY  583 (775)
T ss_pred             HHHHHHHhhhhcc-Ccc--eeeeeeeeeee---ccccceeeeeecCCCchhHHHHhh--hhhhHHHHHHHHHHHHHHHHH
Confidence            3467888888888 666  99999999997   566899999999 99999999877  459999999999999999999


Q ss_pred             HHhh-CCccccCCCCCceeeecCCc-ceeEEeecccccccccccCCC--------CCCCCccchhhHHHHhhhhccCCCC
Q psy320           83 LHTK-HNLVHTSIKPESIFFKADHV-YIMTLINIQQATTHQECHDQQ--------SSSKTKSKIFCEILEQCRLNQDFRL  152 (202)
Q Consensus        83 lh~~-~~ivH~dl~p~nil~~~~~~-~~~~l~Dfg~a~~~~~~~~~~--------~~~~~~~~~ape~~~~~~~~~~~~~  152 (202)
                      |... .-|+|-||||.|||+..+.. +.+||+|||+++.+.......        ...||.+|+.||.+....  .....
T Consensus       584 LNEikpPIIHYDLKPgNILLv~GtacGeIKITDFGLSKIMdddSy~~vdGmeLTSQgAGTYWYLPPEcFvVgk--ePPKI  661 (775)
T KOG1151|consen  584 LNEIKPPIIHYDLKPGNILLVNGTACGEIKITDFGLSKIMDDDSYNSVDGMELTSQGAGTYWYLPPECFVVGK--EPPKI  661 (775)
T ss_pred             HhccCCCeeeeccCCccEEEecCcccceeEeeecchhhhccCCccCcccceeeecccCceeeecCcceeecCC--CCCcc
Confidence            9984 25999999999999987643 349999999999986533221        348999999999987543  13445


Q ss_pred             CCCcchhhHHHHHHHHHHHHHHHhcCCCCCCCC-----CCCCCcccceeeee
Q psy320          153 DPRVDPTSIKMYTTFCEILEQCRLNHQDFRPDP-----RVDPTSIKMYTVAI  199 (202)
Q Consensus       153 ~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~  199 (202)
                      +.++|+||+|+      +|.+|+.|+.||.-.-     -.+.+.++...|.+
T Consensus       662 snKVDVWSvGV------IFyQClYGrKPFGhnqsQQdILqeNTIlkAtEVqF  707 (775)
T KOG1151|consen  662 SNKVDVWSVGV------IFYQCLYGRKPFGHNQSQQDILQENTILKATEVQF  707 (775)
T ss_pred             ccceeeEeeeh------hhhhhhccCCCCCCchhHHHHHhhhchhcceeccC
Confidence            67999999997      7889999999997432     33445555555443

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.94  E-value=1.7e-25  Score=173.78  Aligned_cols=151  Identities=21%  Similarity=0.260  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+++++++ +||  ||+++++++.    .+...|+||||+ +++|.+++.+.  +.+++..+..++.|++.||.|||
T Consensus        48 ~~~e~~~l~~l-~h~--~i~~~~~~~~----~~~~~~~v~e~~~~~~L~~~~~~~--~~l~~~~~~~~~~qil~~l~~lH  118 (290)
T cd05580          48 VLNEKRILQSI-RHP--FLVNLYGSFQ----DDSNLYLVMEYVPGGELFSHLRKS--GRFPEPVARFYAAQVVLALEYLH  118 (290)
T ss_pred             HHHHHHHHHhC-CCC--CccceeeEEE----cCCeEEEEEecCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH
Confidence            45678888888 455  9999999998    577999999999 99999998776  45999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~  164 (202)
                      +. |++|+||+|+||+++.++.  ++|+|||.+......  .....+++.|++||.+...      ..+.++|+||+|+.
T Consensus       119 ~~-~i~H~dl~p~nili~~~~~--~kl~dfg~~~~~~~~--~~~~~~~~~y~aPE~~~~~------~~~~~~Di~slG~i  187 (290)
T cd05580         119 SL-DIVYRDLKPENLLLDSDGY--IKITDFGFAKRVKGR--TYTLCGTPEYLAPEIILSK------GYGKAVDWWALGIL  187 (290)
T ss_pred             HC-CEecCCCCHHHEEECCCCC--EEEeeCCCccccCCC--CCCCCCCccccChhhhcCC------CCCccccHHHHHHH
Confidence            95 9999999999999988776  999999998876432  2345688899999988632      35678999999863


Q ss_pred             HHHHHHHHHHHhcCCCCC
Q psy320          165 TTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~  182 (202)
                            +..+..|..+|.
T Consensus       188 ------l~~l~~g~~p~~  199 (290)
T cd05580         188 ------IYEMLAGYPPFF  199 (290)
T ss_pred             ------HHHHHhCCCCCC
Confidence                  224444666554

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.94  E-value=1.3e-25  Score=172.38  Aligned_cols=148  Identities=16%  Similarity=0.147  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCC---CCCCHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKF---QPAPLVVAKIIVNQILEGLN   81 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~---~~~~~~~~~~~~~qi~~~l~   81 (202)
                      +.+|++.++.+ +|+  ||+++++.+.    .....|+||||+ +++|.+++.....   +..++..+..++.|++.|+.
T Consensus        42 ~~~e~~~~~~l-~h~--nii~~~~~~~----~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~  114 (269)
T cd05042          42 FLQEVQPYREL-NHP--NVLQCLGQCI----ESIPYLLVLEFCPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLL  114 (269)
T ss_pred             HHHHHHHHHhC-CCC--CcceEEEEEC----CCCceEEEEEeCCCCcHHHHHHhccccccccccHHHHHHHHHHHHHHHH
Confidence            45677777766 455  9999999998    566899999999 8999999876532   23567888999999999999


Q ss_pred             HHHhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc---CCCCCCCCccchhhHHHHhhhhc-cCCCCCCCcc
Q psy320           82 HLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH---DQQSSSKTKSKIFCEILEQCRLN-QDFRLDPRVD  157 (202)
Q Consensus        82 ~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~---~~~~~~~~~~~~ape~~~~~~~~-~~~~~~~~~D  157 (202)
                      |||+. |++||||||+||+++.++.  ++++|||.+.......   ......++..|+|||.+...... ....++.++|
T Consensus       115 ~lH~~-~ivH~dlkp~Nill~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~D  191 (269)
T cd05042         115 WLHQA-DFIHSDLALRNCQLTADLS--VKIGDYGLALEQYPEDYYITKDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSN  191 (269)
T ss_pred             HHHhc-CEecccccHhheEecCCCc--EEEeccccccccccchheeccCCCCCcccccCHHHHhhccccccccccchhhH
Confidence            99996 9999999999999998776  9999999987643221   11223455679999998743211 1234567999


Q ss_pred             hhhHHH
Q psy320          158 PTSIKM  163 (202)
Q Consensus       158 iwsl~~  163 (202)
                      +||+|+
T Consensus       192 iwslG~  197 (269)
T cd05042         192 IWSLGV  197 (269)
T ss_pred             HHHHHH
Confidence            999985

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>KOG0194|consensus

Probab=99.94  E-value=1.3e-26  Score=186.73  Aligned_cols=143  Identities=15%  Similarity=0.204  Sum_probs=119.9

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ..+.+|+++++.+ +||  |||+++|+..    ...-+++|||+| ||+|.+++++.+ +.++..+...++.+.+.||.|
T Consensus       206 ~e~m~EArvMr~l-~H~--NVVr~yGVa~----~~~Pl~ivmEl~~gGsL~~~L~k~~-~~v~~~ek~~~~~~AA~Gl~Y  277 (474)
T KOG0194|consen  206 KEFMKEARVMRQL-NHP--NVVRFYGVAV----LEEPLMLVMELCNGGSLDDYLKKNK-KSLPTLEKLRFCYDAARGLEY  277 (474)
T ss_pred             HHHHHHHHHHHhC-CCC--CEEEEEEEEc----CCCccEEEEEecCCCcHHHHHHhCC-CCCCHHHHHHHHHHHHhHHHH
Confidence            4567888888888 566  9999999998    566799999999 999999999876 359999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC-CCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ-SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~-~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      ||++ +++||||-.+|+|++.++.  +|++|||+++......... ...-...|+|||.+...      .|+.++|+||+
T Consensus       278 Lh~k-~~IHRDIAARNcL~~~~~~--vKISDFGLs~~~~~~~~~~~~~klPirWLAPEtl~~~------~~s~kTDV~sf  348 (474)
T KOG0194|consen  278 LHSK-NCIHRDIAARNCLYSKKGV--VKISDFGLSRAGSQYVMKKFLKKLPIRWLAPETLNTG------IFSFKTDVWSF  348 (474)
T ss_pred             HHHC-CCcchhHhHHHheecCCCe--EEeCccccccCCcceeeccccccCcceecChhhhccC------ccccccchhhe
Confidence            9997 9999999999999998776  8999999988764222222 12244579999999944      48899999999


Q ss_pred             HH
Q psy320          162 KM  163 (202)
Q Consensus       162 ~~  163 (202)
                      |+
T Consensus       349 GV  350 (474)
T KOG0194|consen  349 GV  350 (474)
T ss_pred             ee
Confidence            75

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.94  E-value=1.6e-25  Score=173.73  Aligned_cols=143  Identities=13%  Similarity=0.101  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCC-----------CCCCHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKF-----------QPAPLVVAKII   72 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~-----------~~~~~~~~~~~   72 (202)
                      .+.+|+++++++ +||  ||+++++++.    .....++||||+ +++|.+++.....           ..+++..++.+
T Consensus        53 ~~~~e~~~l~~l-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~  125 (288)
T cd05093          53 DFHREAELLTNL-QHE--HIVKFYGVCV----EGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHI  125 (288)
T ss_pred             HHHHHHHHHHhC-CCC--CcceEEEEEe----cCCccEEEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHH
Confidence            356688888888 455  9999999998    566899999999 8999999875431           24899999999


Q ss_pred             HHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC---CCCCCCccchhhHHHHhhhhccC
Q psy320           73 VNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ---QSSSKTKSKIFCEILEQCRLNQD  149 (202)
Q Consensus        73 ~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~---~~~~~~~~~~ape~~~~~~~~~~  149 (202)
                      +.|++.||.|||++ |++||||||+||+++.++.  ++|+|||.+.........   ....++..|+|||.+..      
T Consensus       126 ~~ql~~aL~~lH~~-~i~H~dlkp~Nili~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------  196 (288)
T cd05093         126 AQQIAAGMVYLASQ-HFVHRDLATRNCLVGENLL--VKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMY------  196 (288)
T ss_pred             HHHHHHHHHHHHhC-CeeecccCcceEEEccCCc--EEeccCCccccccCCceeecCCCCCccccccCHHHhcc------
Confidence            99999999999996 9999999999999988776  999999998865322211   12234668999999873      


Q ss_pred             CCCCCCcchhhHHH
Q psy320          150 FRLDPRVDPTSIKM  163 (202)
Q Consensus       150 ~~~~~~~Diwsl~~  163 (202)
                      ..++.++|+||+|+
T Consensus       197 ~~~~~~sDiwslG~  210 (288)
T cd05093         197 RKFTTESDVWSLGV  210 (288)
T ss_pred             CCCCchhhHHHHHH
Confidence            33677999999986

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.94  E-value=9.3e-26  Score=187.36  Aligned_cols=142  Identities=21%  Similarity=0.232  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcC---CCCCCHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQK---FQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~---~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ..+|+++++++ +||  ||+++++++.    .....|+|+++++++|.+++....   ........++.++.|++.||.|
T Consensus       210 ~~~Ei~il~~l-~Hp--nIv~l~~~~~----~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~y  282 (501)
T PHA03210        210 LENEILALGRL-NHE--NILKIEEILR----SEANTYMITQKYDFDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEY  282 (501)
T ss_pred             HHHHHHHHHhC-CCC--CcCcEeEEEE----ECCeeEEEEeccccCHHHHHhhccccccccccHHHHHHHHHHHHHHHHH
Confidence            45788888888 555  9999999998    466889999999888888775432   1224466788899999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC--CCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ--QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~--~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      ||++ ||+||||||+|||++.++.  +||+|||++..+......  ....|+..|++||.+...      .++.++|+||
T Consensus       283 LH~~-gIiHrDLKP~NILl~~~~~--vkL~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~~DiwS  353 (501)
T PHA03210        283 IHDK-KLIHRDIKLENIFLNCDGK--IVLGDFGTAMPFEKEREAFDYGWVGTVATNSPEILAGD------GYCEITDIWS  353 (501)
T ss_pred             HHhC-CeecCCCCHHHEEECCCCC--EEEEeCCCceecCcccccccccccCCcCCCCchhhcCC------CCCcHHHHHH
Confidence            9996 9999999999999998876  999999999876533222  235789999999998843      3778999999


Q ss_pred             HHH
Q psy320          161 IKM  163 (202)
Q Consensus       161 l~~  163 (202)
                      +|+
T Consensus       354 lGv  356 (501)
T PHA03210        354 CGL  356 (501)
T ss_pred             HHH
Confidence            986

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.94  E-value=2e-25  Score=174.49  Aligned_cols=143  Identities=13%  Similarity=0.158  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC--------------CCCCCHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK--------------FQPAPLVVAK   70 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~--------------~~~~~~~~~~   70 (202)
                      ..+|+..++.+.+||  ||+++++++.    .....++||||+ +++|.+++.+..              ...++...+.
T Consensus        67 ~~~E~~~l~~l~~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (304)
T cd05101          67 LVSEMEMMKMIGKHK--NIINLLGACT----QDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLV  140 (304)
T ss_pred             HHHHHHHHHhhccCC--CchheeEEEe----cCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHH
Confidence            456788888875566  9999999998    456889999999 899999997642              1247788899


Q ss_pred             HHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC---CCCCCCccchhhHHHHhhhhc
Q psy320           71 IIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ---QSSSKTKSKIFCEILEQCRLN  147 (202)
Q Consensus        71 ~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~---~~~~~~~~~~ape~~~~~~~~  147 (202)
                      .++.|++.||.|||+. |++|+||||+||+++.++.  ++|+|||.++........   ....++..|+|||.+..    
T Consensus       141 ~~~~qi~~al~~LH~~-givH~dlkp~Nili~~~~~--~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~----  213 (304)
T cd05101         141 SCTYQVARGMEYLASQ-KCIHRDLAARNVLVTENNV--MKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALFD----  213 (304)
T ss_pred             HHHHHHHHHHHHHHHC-CeeecccccceEEEcCCCc--EEECCCccceecccccccccccCCCCCceeeCchhhcc----
Confidence            9999999999999996 9999999999999988776  999999999876432211   12345567999999873    


Q ss_pred             cCCCCCCCcchhhHHH
Q psy320          148 QDFRLDPRVDPTSIKM  163 (202)
Q Consensus       148 ~~~~~~~~~Diwsl~~  163 (202)
                        ..++.++|+||+|+
T Consensus       214 --~~~~~~~Di~slG~  227 (304)
T cd05101         214 --RVYTHQSDVWSFGV  227 (304)
T ss_pred             --CCCCchhhHHHHHH
Confidence              33778999999985

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.94  E-value=1.7e-25  Score=172.98  Aligned_cols=143  Identities=16%  Similarity=0.157  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC---------------CCCCCHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK---------------FQPAPLVV   68 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~---------------~~~~~~~~   68 (202)
                      .+.+|++.++.+ +||  ||+++++++.    .+...|+||||+ +++|.+++....               ...+++..
T Consensus        53 ~~~~E~~~l~~l-~h~--niv~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (283)
T cd05090          53 EFQQEASLMAEL-HHP--NIVCLLGVVT----QEQPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGD  125 (283)
T ss_pred             HHHHHHHHHhhC-CCC--CeeeEEEEEe----cCCceEEEEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHH
Confidence            355788888888 455  9999999988    566899999999 899999985432               12378888


Q ss_pred             HHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC---CCCCCCCccchhhHHHHhhh
Q psy320           69 AKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD---QQSSSKTKSKIFCEILEQCR  145 (202)
Q Consensus        69 ~~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~ape~~~~~~  145 (202)
                      +..++.|++.||.|||++ |++|+||||+||+++.++.  ++|+|||.++.......   .....++..|++||.+... 
T Consensus       126 ~~~i~~~i~~al~~lH~~-~i~H~dlkp~nili~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-  201 (283)
T cd05090         126 FLHIAIQIAAGMEYLSSH-FFVHKDLAARNILIGEQLH--VKISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIMYG-  201 (283)
T ss_pred             HHHHHHHHHHHHHHHHhc-CeehhccccceEEEcCCCc--EEeccccccccccCCcceecccCCCccceecChHHhccC-
Confidence            999999999999999996 9999999999999998776  99999999987543221   1123455679999988733 


Q ss_pred             hccCCCCCCCcchhhHHH
Q psy320          146 LNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus       146 ~~~~~~~~~~~Diwsl~~  163 (202)
                           .++.++|+||+|+
T Consensus       202 -----~~~~~~Dv~slG~  214 (283)
T cd05090         202 -----KFSSDSDIWSFGV  214 (283)
T ss_pred             -----CCCchhhhHHHHH
Confidence                 3678999999985

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.94  E-value=1.4e-25  Score=173.43  Aligned_cols=143  Identities=13%  Similarity=0.093  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCC-------------CCCCHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKF-------------QPAPLVVAK   70 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~-------------~~~~~~~~~   70 (202)
                      .+.+|++.++.+ +|+  ||+++++++.    .+...+++|||+ +++|.+++.....             ..+++..++
T Consensus        53 ~~~~e~~~l~~l-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~  125 (280)
T cd05092          53 DFQREAELLTVL-QHQ--HIVRFYGVCT----EGRPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQML  125 (280)
T ss_pred             HHHHHHHHHhcC-CCC--CCceEEEEEe----cCCceEEEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHH
Confidence            456788888888 555  9999999988    466899999999 8999999876431             248889999


Q ss_pred             HHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC---CCCCCCCccchhhHHHHhhhhc
Q psy320           71 IIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD---QQSSSKTKSKIFCEILEQCRLN  147 (202)
Q Consensus        71 ~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~ape~~~~~~~~  147 (202)
                      .++.|++.|+.|||+. |++|+||||+||+++.++.  ++|+|||.+........   .....+++.|++||.+...   
T Consensus       126 ~~~~qi~~al~~LH~~-~i~H~dlkp~nil~~~~~~--~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~---  199 (280)
T cd05092         126 AIASQIASGMVYLASL-HFVHRDLATRNCLVGQGLV--VKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYR---  199 (280)
T ss_pred             HHHHHHHHHHHHHHHC-CeecccccHhhEEEcCCCC--EEECCCCceeEcCCCceeecCCCccccccccCHHHhccC---
Confidence            9999999999999995 9999999999999988766  99999999876532211   1122345679999988743   


Q ss_pred             cCCCCCCCcchhhHHH
Q psy320          148 QDFRLDPRVDPTSIKM  163 (202)
Q Consensus       148 ~~~~~~~~~Diwsl~~  163 (202)
                         .++.++|+||+|+
T Consensus       200 ---~~~~~~Di~slG~  212 (280)
T cd05092         200 ---KFTTESDIWSFGV  212 (280)
T ss_pred             ---CcCchhhHHHHHH
Confidence               3778999999985

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.94  E-value=1.7e-25  Score=172.57  Aligned_cols=143  Identities=15%  Similarity=0.114  Sum_probs=116.8

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC------------CCCCCHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK------------FQPAPLVVAKI   71 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~------------~~~~~~~~~~~   71 (202)
                      .+.+|+++++.+ +|+  ||+++++++.    .+...++||||+ +++|.+++...+            ...+++..+..
T Consensus        54 ~~~~e~~~l~~l-~~~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~  126 (280)
T cd05049          54 DFEREAELLTNF-QHE--NIVKFYGVCT----EGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQ  126 (280)
T ss_pred             HHHHHHHHHHhc-CCC--CchheeeEEe----cCCCeEEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHH
Confidence            456788888888 455  9999999998    456899999999 999999997643            23478899999


Q ss_pred             HHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC---CCCCCCCccchhhHHHHhhhhcc
Q psy320           72 IVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD---QQSSSKTKSKIFCEILEQCRLNQ  148 (202)
Q Consensus        72 ~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~ape~~~~~~~~~  148 (202)
                      ++.|++.|+.++|++ |++|+||||+||+++.++.  ++|+|||.+........   .....++..|+|||.+...    
T Consensus       127 ~~~~i~~~l~~lH~~-~i~h~dlkp~nili~~~~~--~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~----  199 (280)
T cd05049         127 IAVQIASGMVYLASQ-HFVHRDLATRNCLVGYDLV--VKIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESIMYR----  199 (280)
T ss_pred             HHHHHHHHHHHHhhC-CeeccccccceEEEcCCCe--EEECCcccceecccCcceecCCCCcccceecChhhhccC----
Confidence            999999999999996 9999999999999998876  99999999876432211   1223456789999998743    


Q ss_pred             CCCCCCCcchhhHHH
Q psy320          149 DFRLDPRVDPTSIKM  163 (202)
Q Consensus       149 ~~~~~~~~Diwsl~~  163 (202)
                        .+++++|+||+|+
T Consensus       200 --~~~~~~Di~slG~  212 (280)
T cd05049         200 --KFTTESDVWSFGV  212 (280)
T ss_pred             --CcchhhhHHHHHH
Confidence              3778999999985

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.94  E-value=1.7e-25  Score=170.30  Aligned_cols=145  Identities=18%  Similarity=0.223  Sum_probs=119.3

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++++ +||  ||+++++.+.    .+...++||||+ +++|.+++.......+++..++.++.|++.++.||
T Consensus        45 ~~~~e~~~l~~~-~~~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l  117 (256)
T cd08220          45 AAQNECQVLKLL-SHP--NIIEYYENFL----EDKALMIVMEYAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHV  117 (256)
T ss_pred             HHHHHHHHHhhC-CCC--chhheeeeEe----cCCEEEEEEecCCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHH
Confidence            455688888888 455  9999999988    566899999999 89999999875545589999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |+. |++|+||+|+||+++.++. .++++|||.+.............++..|++||.+..      ..++.++|+||+|+
T Consensus       118 h~~-~i~h~dl~~~nil~~~~~~-~~~l~d~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~Dv~slG~  189 (256)
T cd08220         118 HTK-LILHRDLKTQNILLDKHKM-VVKIGDFGISKILSSKSKAYTVVGTPCYISPELCEG------KPYNQKSDIWALGC  189 (256)
T ss_pred             HhC-CeecCCCCHHHEEEcCCCC-EEEEccCCCceecCCCccccccccCCcccCchhccC------CCCCcccchHHHHH
Confidence            995 9999999999999986543 489999999987654333334567889999999873      33677999999986


Q ss_pred             H
Q psy320          164 Y  164 (202)
Q Consensus       164 ~  164 (202)
                      .
T Consensus       190 ~  190 (256)
T cd08220         190 V  190 (256)
T ss_pred             H
Confidence            3

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.94  E-value=3.5e-25  Score=168.76  Aligned_cols=143  Identities=18%  Similarity=0.202  Sum_probs=119.7

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+++++++ +|+  ||++++++|.    +....+++|||+ +++|.+++.+.....+++..+..++.|++.++.||
T Consensus        45 ~~~~e~~~l~~~-~h~--~i~~~~~~~~----~~~~~~~~~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l  117 (256)
T cd08221          45 DALNEIVILSLL-QHP--NIIAYYNHFM----DDNTLLIEMEYANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYI  117 (256)
T ss_pred             HHHHHHHHHHhC-CCC--CeeEEEeEEe----cCCeEEEEEEecCCCcHHHHHHhccccCCCHHHHHHHHHHHHHHHHHH
Confidence            456788888888 555  9999999998    567899999999 89999999876445689999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |+. |++|+||+|+||+++.++.  ++++|||.+....... ......+++.|.+||....      ..++.++|+||+|
T Consensus       118 h~~-~i~h~dl~p~ni~~~~~~~--~kl~d~~~~~~~~~~~~~~~~~~~~~~y~ape~~~~------~~~~~~~Dv~slG  188 (256)
T cd08221         118 HKA-GILHRDIKTLNIFLTKAGL--IKLGDFGISKILGSEYSMAETVVGTPYYMSPELCQG------VKYNFKSDIWALG  188 (256)
T ss_pred             HhC-CccccCCChHhEEEeCCCC--EEECcCcceEEcccccccccccCCCccccCHhhcCC------CCCCCcchhHHHH
Confidence            995 9999999999999998876  9999999988764332 2223467889999999873      3356789999998


Q ss_pred             H
Q psy320          163 M  163 (202)
Q Consensus       163 ~  163 (202)
                      +
T Consensus       189 ~  189 (256)
T cd08221         189 C  189 (256)
T ss_pred             H
Confidence            6

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.94  E-value=1.7e-25  Score=171.50  Aligned_cols=155  Identities=14%  Similarity=0.143  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+.+++.+ +||  ||+++++.+.    .+...++||||+ +++|.+++...+  .+++..++.++.|++.|+.|||
T Consensus        53 ~~~e~~~~~~l-~h~--~ii~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH  123 (267)
T cd06645          53 VQQEIIMMKDC-KHS--NIVAYFGSYL----RRDKLWICMEFCGGGSLQDIYHVTG--PLSESQIAYVSRETLQGLYYLH  123 (267)
T ss_pred             HHHHHHHHHhC-CCC--CeeeEEEEEE----eCCEEEEEEeccCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHH
Confidence            35677777777 455  9999999998    466899999999 899999987653  5999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      +. |++|+||+|+||+++.++.  ++|+|||.+....... ......++..|+|||.+....   ...++.++|+||+|+
T Consensus       124 ~~-~i~H~dlkp~nili~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---~~~~~~~~DvwSlG~  197 (267)
T cd06645         124 SK-GKMHRDIKGANILLTDNGH--VKLADFGVSAQITATIAKRKSFIGTPYWMAPEVAAVER---KGGYNQLCDIWAVGI  197 (267)
T ss_pred             HC-CeecCCCCHHHEEECCCCC--EEECcceeeeEccCcccccccccCcccccChhhhcccc---CCCCCchhhhHHHHH
Confidence            96 9999999999999988776  9999999987654321 222456888999999975221   234677999999986


Q ss_pred             HHHHHHHHHHHHhcCCCC
Q psy320          164 YTTFCEILEQCRLNHQDF  181 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~  181 (202)
                      ..+      .+..|.+++
T Consensus       198 il~------~l~~~~~p~  209 (267)
T cd06645         198 TAI------ELAELQPPM  209 (267)
T ss_pred             HHH------HHhcCCCCc
Confidence            322      344455554

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.94  E-value=3e-25  Score=170.54  Aligned_cols=166  Identities=16%  Similarity=0.187  Sum_probs=128.9

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCC--ceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGIN--GTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLN   81 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~--~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~   81 (202)
                      ...+|+.+++++.+|+  ||+++.++|......  ....|+||||+ +++|.+++.......+++..++.++.|++.|+.
T Consensus        48 ~~~~e~~~l~~~~~h~--~i~~~~~~~~~~~~~~~~~~~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~  125 (272)
T cd06637          48 EIKQEINMLKKYSHHR--NIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLS  125 (272)
T ss_pred             HHHHHHHHHHHhcCCC--CeeeEeeEEeecCCCCCCcEEEEEEEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHH
Confidence            3456888888885566  999999999864322  35789999999 889999988755456899999999999999999


Q ss_pred             HHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccc-cCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           82 HLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQEC-HDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        82 ~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~-~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      |||+. +++|+||+|+||+++.++.  ++|+|||++...... .......++..|++||.+.... .++..++.++|+||
T Consensus       126 ~LH~~-~ivh~dl~~~nili~~~~~--~~l~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~-~~~~~~~~~~Dv~s  201 (272)
T cd06637         126 HLHQH-KVIHRDIKGQNVLLTENAE--VKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDE-NPDATYDFKSDLWS  201 (272)
T ss_pred             HHHHC-CCccCCCCHHHEEECCCCC--EEEccCCCceecccccccCCcccccccccCHhHhcccc-CcCCCCCchhhHHH
Confidence            99996 9999999999999998776  999999998865432 2223456888999999986332 12345677999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCC
Q psy320          161 IKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       161 l~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +|+..+      .+..|.+++.
T Consensus       202 lGv~l~------el~~g~~p~~  217 (272)
T cd06637         202 LGITAI------EMAEGAPPLC  217 (272)
T ss_pred             HHHHHH------HHHhCCCCcc
Confidence            986322      4445766664

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.94  E-value=1.4e-25  Score=171.08  Aligned_cols=142  Identities=18%  Similarity=0.135  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+.+++.+ +||  ||+++++++.    . ...++||||+ +++|.+++.... ..++...+..++.|++.||.||
T Consensus        47 ~~~~e~~~l~~l-~h~--~i~~~~~~~~----~-~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~L  117 (259)
T cd05037          47 AFFETASLMSQL-SHK--HLVKLYGVCV----R-DENIMVEEYVKFGPLDVFLHREK-NNVSLHWKLDVAKQLASALHYL  117 (259)
T ss_pred             HHHHHHHHHHcC-CCc--chhheeeEEe----c-CCcEEEEEcCCCCcHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHH
Confidence            445677777777 455  9999999987    3 4679999999 899999987754 2589999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcc-----eeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcch
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVY-----IMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDP  158 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~-----~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Di  158 (202)
                      |+. |++|+||||+||+++.++..     .++++|||.+.....   .....++..|++||.+....    ..++.++|+
T Consensus       118 H~~-~i~H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg~a~~~~~---~~~~~~~~~y~aPE~~~~~~----~~~~~~~Di  189 (259)
T cd05037         118 EDK-KLVHGNVCGKNILVARYGLNEGYVPFIKLSDPGIPITVLS---REERVERIPWIAPECIRNGQ----ASLTIAADK  189 (259)
T ss_pred             hhC-CeecccCccceEEEecCccccCCceeEEeCCCCccccccc---ccccccCCCccChhhhcCCC----CCcchhhHH
Confidence            995 99999999999999977621     399999999887542   22334566799999987431    246778999


Q ss_pred             hhHHH
Q psy320          159 TSIKM  163 (202)
Q Consensus       159 wsl~~  163 (202)
                      ||+|+
T Consensus       190 ~slG~  194 (259)
T cd05037         190 WSFGT  194 (259)
T ss_pred             HHHHH
Confidence            99985

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.94  E-value=1.5e-25  Score=174.58  Aligned_cols=144  Identities=11%  Similarity=0.160  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC--------------CCCCCHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK--------------FQPAPLVVA   69 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~--------------~~~~~~~~~   69 (202)
                      .+.+|++++.++.+||  ||+++++++.    .....|+|+||+ +++|.+++.+..              .+.+++..+
T Consensus        48 ~~~~E~~~l~~l~~hp--~iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~  121 (297)
T cd05089          48 DFAGELEVLCKLGHHP--NIINLLGACE----NRGYLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQL  121 (297)
T ss_pred             HHHHHHHHHHhhcCCC--chhheEEEEc----cCCcceEEEEecCCCcHHHHHHhccccccccccccccCccCCCCHHHH
Confidence            3456888888885555  9999999998    456899999999 899999997542              134888999


Q ss_pred             HHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccC
Q psy320           70 KIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQD  149 (202)
Q Consensus        70 ~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~  149 (202)
                      ..++.|++.|+.|||+. |++|+||||+||+++.++.  ++|+|||++..............+..|++||....      
T Consensus       122 ~~i~~qi~~al~~lH~~-~ivH~dlkp~Nill~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~------  192 (297)
T cd05089         122 LQFASDVATGMQYLSEK-QFIHRDLAARNVLVGENLA--SKIADFGLSRGEEVYVKKTMGRLPVRWMAIESLNY------  192 (297)
T ss_pred             HHHHHHHHHHHHHHHHC-CcccCcCCcceEEECCCCe--EEECCcCCCccccceeccCCCCcCccccCchhhcc------
Confidence            99999999999999995 9999999999999988766  99999999865322111112233456999998873      


Q ss_pred             CCCCCCcchhhHHH
Q psy320          150 FRLDPRVDPTSIKM  163 (202)
Q Consensus       150 ~~~~~~~Diwsl~~  163 (202)
                      ..++.++|+||+|+
T Consensus       193 ~~~~~~~DvwSlG~  206 (297)
T cd05089         193 SVYTTKSDVWSFGV  206 (297)
T ss_pred             CCCCchhhHHHHHH
Confidence            33678999999985

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.93  E-value=1.6e-25  Score=192.95  Aligned_cols=157  Identities=14%  Similarity=0.112  Sum_probs=123.5

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC---------CCCCCHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK---------FQPAPLVVAKIIVN   74 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~---------~~~~~~~~~~~~~~   74 (202)
                      .+.+|++++.++ +||  ||+++++++.    .+...|+||||+ +++|.+++....         ....+...+..++.
T Consensus        48 rflrEi~ILs~L-~HP--NIVkl~~v~~----d~~~lyLVMEY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~  120 (932)
T PRK13184         48 RFLREAKIAADL-IHP--GIVPVYSICS----DGDPVYYTMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFH  120 (932)
T ss_pred             HHHHHHHHHHhC-CCc--CcCeEEEEEe----eCCEEEEEEEcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHH
Confidence            456788888888 455  9999999998    466899999999 999999886421         12356677889999


Q ss_pred             HHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-------------------CCCCCCCCccc
Q psy320           75 QILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-------------------DQQSSSKTKSK  135 (202)
Q Consensus        75 qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-------------------~~~~~~~~~~~  135 (202)
                      |++.||.|||+. |++||||||+||+++.++.  ++++|||.++......                   ......||+.|
T Consensus       121 QIa~AL~yLHs~-GIIHRDLKPeNILLd~dg~--vKLiDFGLAk~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~Y  197 (932)
T PRK13184        121 KICATIEYVHSK-GVLHRDLKPDNILLGLFGE--VVILDWGAAIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDY  197 (932)
T ss_pred             HHHHHHHHHHHC-CccccCCchheEEEcCCCC--EEEEecCcceecccccccccccccccccccccccccCCCCCCCCCC
Confidence            999999999996 9999999999999998877  9999999998652110                   01123689999


Q ss_pred             hhhHHHHhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCC
Q psy320          136 IFCEILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       136 ~ape~~~~~~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +|||.+..      ..++.++|+||+|+.      +-.+..|.+||+.
T Consensus       198 mAPE~l~g------~~~S~kSDIWSLGVI------LyELLTG~~PF~~  233 (932)
T PRK13184        198 MAPERLLG------VPASESTDIYALGVI------LYQMLTLSFPYRR  233 (932)
T ss_pred             CCHHHhcC------CCCCcHhHHHHHHHH------HHHHHHCCCCCCC
Confidence            99999873      336789999999973      3355668877764

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.93  E-value=2e-25  Score=174.40  Aligned_cols=144  Identities=15%  Similarity=0.187  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++++.+||  ||+++++++.    .....++||||+ +++|.+++.......+++.+++.++.|++.||.|+
T Consensus        84 ~~~~E~~~l~~l~~h~--~iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~l  157 (302)
T cd05055          84 ALMSELKIMSHLGNHE--NIVNLLGACT----IGGPILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFL  157 (302)
T ss_pred             HHHHHHHHHHhccCCC--CcceEEEEEe----cCCceEEEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            3567888888885566  9999999998    455799999999 89999999765444589999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC---CCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ---QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~---~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      |++ +++|+||||+||+++.++.  ++++|||.++........   ....++..|++||.+...      .++.++|+||
T Consensus       158 H~~-~ivH~dlkp~Nil~~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~------~~~~~~Diws  228 (302)
T cd05055         158 ASK-NCIHRDLAARNVLLTHGKI--VKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFNC------VYTFESDVWS  228 (302)
T ss_pred             HHC-CeehhhhccceEEEcCCCe--EEECCCcccccccCCCceeecCCCCcccccCCHhhhccC------CCCcHhHHHH
Confidence            996 9999999999999987665  999999999865432211   122456789999998733      3677999999


Q ss_pred             HHH
Q psy320          161 IKM  163 (202)
Q Consensus       161 l~~  163 (202)
                      +|+
T Consensus       229 lGv  231 (302)
T cd05055         229 YGI  231 (302)
T ss_pred             HHH
Confidence            986

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.93  E-value=8.8e-26  Score=172.78  Aligned_cols=145  Identities=21%  Similarity=0.295  Sum_probs=114.5

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ..+.+|++.+.++ +||  ||+++++++.    .....++|+||+ +++|.+++.......++......++.|++.||.|
T Consensus        46 ~~~~~e~~~l~~l-~h~--ni~~~~g~~~----~~~~~~lv~e~~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~  118 (259)
T PF07714_consen   46 EEFLNEIQILRKL-RHP--NIVKLYGFCI----ENEPLFLVMEYCPGGSLDDYLKSKNKEPLSEQQRLSIAIQIAEALSY  118 (259)
T ss_dssp             HHHHHHHHHHHTH-SBT--TBE-EEEEEE----SSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHH
T ss_pred             eeeeecccccccc-ccc--cccccccccc----ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3456678888878 555  9999999999    445699999999 8999999988744569999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc---CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH---DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~---~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      ||++ +++|++|+++||+++.++.  +||+|||.+.......   ..........|++||.+....      ++.++|+|
T Consensus       119 Lh~~-~iiH~~l~~~nill~~~~~--~Kl~~f~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~------~~~ksDVy  189 (259)
T PF07714_consen  119 LHSN-NIIHGNLSPSNILLDSNGQ--VKLSDFGLSRPISEKSKYKNDSSQQLPLRYLAPEVLKDGE------YTKKSDVY  189 (259)
T ss_dssp             HHHT-TEEEST-SGGGEEEETTTE--EEEESTTTGEETTTSSSEEESTTSESGGGGS-HHHHHHSE------ESHHHHHH
T ss_pred             cccc-ccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccc------cccccccc
Confidence            9996 9999999999999998876  9999999998763211   112334666899999998544      67799999


Q ss_pred             hHHHH
Q psy320          160 SIKMY  164 (202)
Q Consensus       160 sl~~~  164 (202)
                      |+|+.
T Consensus       190 sfG~~  194 (259)
T PF07714_consen  190 SFGML  194 (259)
T ss_dssp             HHHHH
T ss_pred             ccccc
Confidence            99864

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.93  E-value=4.5e-25  Score=170.46  Aligned_cols=157  Identities=16%  Similarity=0.193  Sum_probs=123.2

Q ss_pred             HHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            7 TNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         7 ~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      .+|...++.++...||+|+.+.+.|.    .....|+||||+ +++|.+++.+.  +.+++..++.++.|++.|+.|||+
T Consensus        42 ~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~v~e~~~g~~L~~~l~~~--~~l~~~~~~~~~~ql~~~l~~lH~  115 (278)
T cd05606          42 LNERIMLSLVSTGDCPFIVCMSYAFH----TPDKLSFILDLMNGGDLHYHLSQH--GVFSEAEMRFYAAEIILGLEHMHN  115 (278)
T ss_pred             HHHHHHHHHHHhCCCCcEeeeeeeee----cCCEEEEEEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            34445555553333669999999998    567999999999 99999888665  459999999999999999999999


Q ss_pred             hCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHH
Q psy320           86 KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYT  165 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~  165 (202)
                      . +++|+||+|+||+++.++.  ++|+|||.+...... ......++..|++||.+..     +..++.++|+||+|+..
T Consensus       116 ~-~i~H~di~p~nili~~~~~--~kl~dfg~~~~~~~~-~~~~~~~~~~y~aPE~~~~-----~~~~~~~~Di~s~G~~l  186 (278)
T cd05606         116 R-FVVYRDLKPANILLDEHGH--VRISDLGLACDFSKK-KPHASVGTHGYMAPEVLQK-----GVAYDSSADWFSLGCML  186 (278)
T ss_pred             C-CEEcCCCCHHHEEECCCCC--EEEccCcCccccCcc-CCcCcCCCcCCcCcHHhcC-----CCCCCcccchHhHHHHH
Confidence            5 9999999999999988776  999999998765322 2224568889999999862     22367789999998632


Q ss_pred             HHHHHHHHHHhcCCCCCCC
Q psy320          166 TFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~  184 (202)
                            ..+..|..+|...
T Consensus       187 ------~~l~~g~~p~~~~  199 (278)
T cd05606         187 ------FKLLRGHSPFRQH  199 (278)
T ss_pred             ------HHHHhCCCCCCCC
Confidence                  2455588777543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.93  E-value=1.4e-25  Score=173.47  Aligned_cols=142  Identities=20%  Similarity=0.195  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      ..+|++.++++ +||  ||+++++++.    +....++|+||++++|.+++.... +.+++..++.++.|++.||.|||+
T Consensus        46 ~~~ei~~l~~l-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~al~~LH~  117 (284)
T cd07839          46 ALREICLLKEL-KHK--NIVRLYDVLH----SDKKLTLVFEYCDQDLKKYFDSCN-GDIDPEIVKSFMFQLLKGLAFCHS  117 (284)
T ss_pred             hhHHHHHHHhc-CCC--CeeeHHHHhc----cCCceEEEEecCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            45688888888 555  9999999998    566899999999888988876543 459999999999999999999999


Q ss_pred             hCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           86 KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      . |++|+||+|+||+++.++.  ++|+|||.+....... ......++..|+|||.+..     ...++.++|+||+|+
T Consensus       118 ~-~i~H~dl~~~nil~~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-----~~~~~~~~DiwslG~  188 (284)
T cd07839         118 H-NVLHRDLKPQNLLINKNGE--LKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFG-----AKLYSTSIDMWSAGC  188 (284)
T ss_pred             C-CEecCCCCHHHEEEcCCCc--EEECccchhhccCCCCCCcCCCccccCCcChHHHhC-----CcccCcHHHHHHHHH
Confidence            5 9999999999999998876  9999999988654321 1223456788999999863     223577899999986

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=1.6e-25  Score=171.22  Aligned_cols=153  Identities=16%  Similarity=0.193  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+++++++ +||  ||+++++++.    .....++|+||+ +++|.+.+....  .+++..++.++.|++.|+.+||
T Consensus        51 ~~~e~~~l~~l-~~~--~i~~~~~~~~----~~~~~~~v~e~~~~~~l~~~~~~~~--~~~~~~~~~~~~~l~~~l~~lH  121 (263)
T cd06625          51 LECEIQLLKNL-QHE--RIVQYYGCLR----DDETLSIFMEYMPGGSVKDQLKAYG--ALTETVTRKYTRQILEGVEYLH  121 (263)
T ss_pred             HHHHHHHHHhC-CCC--CeeeeEEEEc----cCCeEEEEEEECCCCcHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHH
Confidence            45677777777 455  9999999998    466999999999 899999987653  4899999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC----CCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ----QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~----~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      +. |++|+||+|+||+++.++.  ++|+|||.++........    ....++..|++||.+...      .++.++|+||
T Consensus       122 ~~-~i~H~dl~p~nilv~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~------~~~~~~Di~s  192 (263)
T cd06625         122 SN-MIVHRDIKGANILRDSAGN--VKLGDFGASKRLQTICSSGTGMKSVTGTPYWMSPEVISGE------GYGRKADVWS  192 (263)
T ss_pred             hC-CeecCCCCHHHEEEcCCCC--EEEeecccceeccccccccccccCCCcCccccCcceeccC------CCCchhhhHH
Confidence            95 9999999999999988776  999999998765332111    224567889999998733      3678999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCC
Q psy320          161 IKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       161 l~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +|+.      +..+..|.++|.
T Consensus       193 lG~i------l~el~~g~~p~~  208 (263)
T cd06625         193 VGCT------VVEMLTEKPPWA  208 (263)
T ss_pred             HHHH------HHHHHhCCCCcc
Confidence            9873      334555777664

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.93  E-value=2.3e-25  Score=169.86  Aligned_cols=142  Identities=15%  Similarity=0.237  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|++.++++ +||  ||+++++++.    .....|+||||+ +++|.+++.... +.+++..++.++.|++.||.||
T Consensus        45 ~~~~e~~~l~~l-~h~--~i~~~~~~~~----~~~~~~iv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~l  116 (256)
T cd05114          45 DFIEEAKVMMKL-SHP--KLVQLYGVCT----QQKPLYIVTEFMENGCLLNYLRQRQ-GKLSKDMLLSMCQDVCEGMEYL  116 (256)
T ss_pred             HHHHHHHHHHHC-CCC--CceeEEEEEc----cCCCEEEEEEcCCCCcHHHHHHhCc-cCCCHHHHHHHHHHHHHHHHHH
Confidence            456788999888 555  9999999998    466899999999 899999887543 3589999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC--CCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ--SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~--~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      |+. |++|+||+|+||+++.++.  ++++|||.+..........  ...++..|+|||.+...      .++.++|+||+
T Consensus       117 H~~-~i~H~dl~p~ni~i~~~~~--~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~------~~~~~~Di~s~  187 (256)
T cd05114         117 ERN-SFIHRDLAARNCLVSSTGV--VKVSDFGMTRYVLDDEYTSSSGAKFPVKWSPPEVFNFS------KYSSKSDVWSF  187 (256)
T ss_pred             HHC-CccccccCcceEEEcCCCe--EEECCCCCccccCCCceeccCCCCCchhhCChhhcccC------ccchhhhhHHH
Confidence            996 9999999999999987766  9999999988653322111  22345579999998733      36779999999


Q ss_pred             HH
Q psy320          162 KM  163 (202)
Q Consensus       162 ~~  163 (202)
                      |+
T Consensus       188 G~  189 (256)
T cd05114         188 GV  189 (256)
T ss_pred             HH
Confidence            85

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.93  E-value=2.6e-25  Score=169.73  Aligned_cols=140  Identities=11%  Similarity=0.179  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+.+++.+ +||  ||+++++++.     ....++||||+ +++|.+++...  +.+++..+..++.|++.|+.++
T Consensus        42 ~~~~e~~~l~~l-~h~--~i~~~~~~~~-----~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~al~~l  111 (257)
T cd05116          42 ELLREANVMQQL-DNP--YIVRMIGICE-----AESWMLVMELAELGPLNKFLQKN--KHVTEKNITELVHQVSMGMKYL  111 (257)
T ss_pred             HHHHHHHHHHhC-CCC--CcceEEEEEc-----CCCcEEEEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHH
Confidence            345677777777 555  9999999875     34678999999 88999998765  3589999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC----CCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ----QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~----~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      |++ |++|+||||.||+++.++.  ++|+|||.+.........    ....++..|++||.+..      ..++.++|+|
T Consensus       112 H~~-~i~H~dlkp~nill~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~Di~  182 (257)
T cd05116         112 EET-NFVHRDLAARNVLLVTQHY--AKISDFGLSKALGADENYYKAKTHGKWPVKWYAPECMNY------YKFSSKSDVW  182 (257)
T ss_pred             HHC-CEeecccchhhEEEcCCCe--EEECCCccccccCCCCCeeeecCCCCCCccccCHhHhcc------CCcCchhHHH
Confidence            996 9999999999999988765  999999999876432211    12234568999998863      2367799999


Q ss_pred             hHHH
Q psy320          160 SIKM  163 (202)
Q Consensus       160 sl~~  163 (202)
                      |+|+
T Consensus       183 slG~  186 (257)
T cd05116         183 SFGV  186 (257)
T ss_pred             HHHH
Confidence            9986

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.93  E-value=2.9e-25  Score=170.12  Aligned_cols=141  Identities=17%  Similarity=0.143  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      +.+|+.++..+ +||  ||+++++++.    .....++||||+ +++|..++.+.. +.+++..+..++.|++.||.|||
T Consensus        51 ~~~~~~~l~~l-~hp--~iv~~~~~~~----~~~~~~lv~e~~~~~~l~~~~~~~~-~~~~~~~~~~i~~qi~~~l~~lH  122 (262)
T cd05077          51 FFETASMMRQV-SHK--HIVLLYGVCV----RDVENIMVEEFVEFGPLDLFMHRKS-DVLTTPWKFKVAKQLASALSYLE  122 (262)
T ss_pred             HHHHHHHHHhC-CCC--CEeeEEEEEe----cCCCCEEEEecccCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHhh
Confidence            34556666666 455  9999999998    456789999999 889988876543 45899999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCc-----ceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           85 TKHNLVHTSIKPESIFFKADHV-----YIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~-----~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      ++ |++||||||+|||++.++.     ..++++|||.+.....   .....++..|+|||.+..     ...++.++|+|
T Consensus       123 ~~-~ivH~dlkp~Nill~~~~~~~~~~~~~~l~d~g~~~~~~~---~~~~~~~~~y~aPE~~~~-----~~~~~~~~Diw  193 (262)
T cd05077         123 DK-DLVHGNVCTKNILLAREGIDGECGPFIKLSDPGIPITVLS---RQECVERIPWIAPECVED-----SKNLSIAADKW  193 (262)
T ss_pred             hC-CeECCCCCcccEEEecCCccCCCCceeEeCCCCCCccccC---cccccccccccChhhhcC-----CCCCCchhHHH
Confidence            96 9999999999999976542     1289999999876532   123456778999998762     23367789999


Q ss_pred             hHHH
Q psy320          160 SIKM  163 (202)
Q Consensus       160 sl~~  163 (202)
                      |+|+
T Consensus       194 slG~  197 (262)
T cd05077         194 SFGT  197 (262)
T ss_pred             HHHH
Confidence            9985

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.93  E-value=1.9e-25  Score=185.18  Aligned_cols=159  Identities=16%  Similarity=0.133  Sum_probs=120.8

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecC----CceEEEEEEccc-cccHHHHHHHcC--CCCCCHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGI----NGTHVCTVTEIM-AECLCNYMIRQK--FQPAPLVVAKIIVNQILE   78 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~----~~~~~~lv~e~~-~~sL~~~~~~~~--~~~~~~~~~~~~~~qi~~   78 (202)
                      +.+|+..+..+   .|+||+++++.+.....    .....++||||+ +++|.+++....  .+.+++..+..++.|++.
T Consensus        78 ~~~Ei~~l~~~---~h~~iv~~~~~~~~~~~~~~~~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~  154 (496)
T PTZ00283         78 AQAEVCCLLNC---DFFSIVKCHEDFAKKDPRNPENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLL  154 (496)
T ss_pred             HHHHHHHHhcC---CCCcEEEeecceecccccCcccceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHH
Confidence            34555555544   35699999988864321    123578999999 999999886532  345899999999999999


Q ss_pred             HHHHHHhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc---CCCCCCCCccchhhHHHHhhhhccCCCCCCC
Q psy320           79 GLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH---DQQSSSKTKSKIFCEILEQCRLNQDFRLDPR  155 (202)
Q Consensus        79 ~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~---~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~  155 (202)
                      ||.|+|+. +++||||||+|||++.++.  +||+|||+++......   ......|++.|+|||.+..      ..++.+
T Consensus       155 aL~~lH~~-~IiHrDLKP~NILl~~~~~--vkL~DFGls~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~------~~~s~k  225 (496)
T PTZ00283        155 AVHHVHSK-HMIHRDIKSANILLCSNGL--VKLGDFGFSKMYAATVSDDVGRTFCGTPYYVAPEIWRR------KPYSKK  225 (496)
T ss_pred             HHHHHHhC-CEecCCCCHHHEEEeCCCC--EEEEecccCeeccccccccccccccCCcceeCHHHhCC------CCCCcH
Confidence            99999996 9999999999999998776  9999999998754321   1224578999999999974      337889


Q ss_pred             cchhhHHHHHHHHHHHHHHHhcCCCCC
Q psy320          156 VDPTSIKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       156 ~Diwsl~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +|+||+|+..+      .+..|..+|.
T Consensus       226 ~DVwSlGvily------eLltG~~Pf~  246 (496)
T PTZ00283        226 ADMFSLGVLLY------ELLTLKRPFD  246 (496)
T ss_pred             HHHHHHHHHHH------HHHHCCCCCC
Confidence            99999986322      3344666554

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.93  E-value=3.4e-25  Score=172.67  Aligned_cols=154  Identities=18%  Similarity=0.245  Sum_probs=123.5

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+.+++.+ +|+  ||+++++.|.    .+.+.|+||||+ +++|.+++...   .++...+..++.|++.||.||
T Consensus        63 ~~~~e~~~l~~~-~h~--~v~~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~i~~ql~~aL~~L  132 (296)
T cd06654          63 LIINEILVMREN-KNP--NIVNYLDSYL----VGDELWVVMEYLAGGSLTDVVTET---CMDEGQIAAVCRECLQALEFL  132 (296)
T ss_pred             HHHHHHHHHHhC-CCC--CEeeEEEEEE----eCCEEEEeecccCCCCHHHHHHhc---CCCHHHHHHHHHHHHHHHHHH
Confidence            455678877777 555  9999999998    466899999999 89999988653   488999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |+. |++|+||+|+||+++.++.  ++|+|||.+....... ......+++.|++||.+..      ..++.++|+||+|
T Consensus       133 H~~-gi~H~dLkp~Nill~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~Dv~s~G  203 (296)
T cd06654         133 HSN-QVIHRDIKSDNILLGMDGS--VKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTR------KAYGPKVDIWSLG  203 (296)
T ss_pred             HHC-CcccCCCCHHHEEEcCCCC--EEECccccchhccccccccCcccCCccccCHHHHcC------CCCCccchHHHHH
Confidence            996 9999999999999988776  9999999988654322 1223468889999999873      3366799999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +..      ..+..|.++|..
T Consensus       204 vil------~~l~~g~~pf~~  218 (296)
T cd06654         204 IMA------IEMIEGEPPYLN  218 (296)
T ss_pred             HHH------HHHHhCCCCCCC
Confidence            632      244557777753

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.93  E-value=2.4e-25  Score=172.95  Aligned_cols=143  Identities=15%  Similarity=0.168  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHc--------------CCCCCCHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQ--------------KFQPAPLVVAK   70 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~--------------~~~~~~~~~~~   70 (202)
                      ..+|+..++++.+|+  ||+++++++.    .+...+++|||+ +++|.+++...              ..+.+++..++
T Consensus        62 ~~~E~~~l~~l~~h~--~i~~~~~~~~----~~~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~  135 (293)
T cd05053          62 LVSEMEMMKMIGKHK--NIINLLGVCT----QEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLV  135 (293)
T ss_pred             HHHHHHHHHhhcCCC--CeeeEEEEEc----CCCCeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHH
Confidence            456888888875566  9999999998    456799999999 89999998652              23468899999


Q ss_pred             HHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC---CCCCCccchhhHHHHhhhhc
Q psy320           71 IIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ---SSSKTKSKIFCEILEQCRLN  147 (202)
Q Consensus        71 ~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~---~~~~~~~~~ape~~~~~~~~  147 (202)
                      .++.|++.|+.|||+. +++|+||||+||+++.++.  ++|+|||.++.........   ...++..|++||.+..    
T Consensus       136 ~i~~qi~~al~~LH~~-~ivH~dlkp~Nil~~~~~~--~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~----  208 (293)
T cd05053         136 SFAYQVARGMEFLASK-KCIHRDLAARNVLVTEDHV--MKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEALFD----  208 (293)
T ss_pred             HHHHHHHHHHHHHHHC-CccccccceeeEEEcCCCe--EEeCccccccccccccceeccCCCCCCccccCHHHhcc----
Confidence            9999999999999996 9999999999999988776  9999999998754322111   1234457999998863    


Q ss_pred             cCCCCCCCcchhhHHH
Q psy320          148 QDFRLDPRVDPTSIKM  163 (202)
Q Consensus       148 ~~~~~~~~~Diwsl~~  163 (202)
                        ..++.++|+||+|+
T Consensus       209 --~~~~~~~Di~slG~  222 (293)
T cd05053         209 --RVYTHQSDVWSFGV  222 (293)
T ss_pred             --CCcCcccceeehhh
Confidence              33678999999975

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.93  E-value=2.8e-25  Score=169.71  Aligned_cols=140  Identities=12%  Similarity=0.189  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      +.+|+.+++++ +||  ||+++++++.     ....++||||+ +++|.+++.... ..+++..++.++.|++.||.|||
T Consensus        42 ~~~E~~~l~~l-~h~--~ii~~~~~~~-----~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~lH  112 (257)
T cd05115          42 MMREAEIMHQL-DNP--YIVRMIGVCE-----AEALMLVMEMASGGPLNKFLSGKK-DEITVSNVVELMHQVSMGMKYLE  112 (257)
T ss_pred             HHHHHHHHHhc-CCC--CeEEEEEEEc-----CCCeEEEEEeCCCCCHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHH
Confidence            55788888888 555  9999999875     34689999999 899999886533 45899999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC----CCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ----QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~----~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      ++ |++|+||||+||+++.++.  ++|+|||.+.........    ....++..|++||.+...      .++.++|+||
T Consensus       113 ~~-~i~H~dlkp~nil~~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~------~~~~~~Di~s  183 (257)
T cd05115         113 GK-NFVHRDLAARNVLLVNQHY--AKISDFGLSKALGADDSYYKARSAGKWPLKWYAPECINFR------KFSSRSDVWS  183 (257)
T ss_pred             hc-CeeecccchheEEEcCCCc--EEeccCCccccccCCccceeccCCCCCCcccCCHHHHccC------CCCchhhHHH
Confidence            96 9999999999999988776  999999999865432211    112234679999998733      3677999999


Q ss_pred             HHH
Q psy320          161 IKM  163 (202)
Q Consensus       161 l~~  163 (202)
                      +|+
T Consensus       184 lG~  186 (257)
T cd05115         184 YGI  186 (257)
T ss_pred             HHH
Confidence            986

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=3.4e-25  Score=170.07  Aligned_cols=167  Identities=15%  Similarity=0.169  Sum_probs=129.9

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecC--CceEEEEEEccc-cccHHHHHHHcC--CCCCCHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGI--NGTHVCTVTEIM-AECLCNYMIRQK--FQPAPLVVAKIIVNQILEG   79 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~--~~~~~~lv~e~~-~~sL~~~~~~~~--~~~~~~~~~~~~~~qi~~~   79 (202)
                      .+.+|+..++++.+|+  ||++++++|.....  .+...++||||+ +++|.+++....  .+.+++..++.++.|++.|
T Consensus        48 ~~~~e~~~l~~~~~h~--~i~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~a  125 (275)
T cd06608          48 EIKEEYNILRKYSNHP--NIATFYGAFIKKNPPGNDDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRG  125 (275)
T ss_pred             HHHHHHHHHHHhcCCC--ChheEEEEEEecCCCCcceEEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Confidence            4567888888886666  99999999986442  356899999999 889999886543  3568999999999999999


Q ss_pred             HHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC-CCCCCCCccchhhHHHHhhhhccCCCCCCCcch
Q psy320           80 LNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD-QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDP  158 (202)
Q Consensus        80 l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~-~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Di  158 (202)
                      |.|||+. |++|+||+|+||+++.++.  ++|+|||.+........ .....++..|+|||.+..... ....++.++|+
T Consensus       126 l~~lH~~-~i~H~~l~p~ni~~~~~~~--~~l~d~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-~~~~~~~~~Dv  201 (275)
T cd06608         126 LAYLHEN-KVIHRDIKGQNILLTKNAE--VKLVDFGVSAQLDSTLGRRNTFIGTPYWMAPEVIACDEQ-PDASYDARSDV  201 (275)
T ss_pred             HHHHhcC-CcccCCCCHHHEEEccCCe--EEECCCccceecccchhhhcCccccccccCHhHhccccc-ccCCccccccH
Confidence            9999996 9999999999999998776  99999999876543222 223467888999999864321 13446678999


Q ss_pred             hhHHHHHHHHHHHHHHHhcCCCCCC
Q psy320          159 TSIKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       159 wsl~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      ||+|+      ++..+..|.++|..
T Consensus       202 ~slG~------il~~l~~g~~p~~~  220 (275)
T cd06608         202 WSLGI------TAIELADGKPPLCD  220 (275)
T ss_pred             HHhHH------HHHHHHhCCCCccc
Confidence            99986      33355557777753

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.93  E-value=4.7e-25  Score=168.05  Aligned_cols=156  Identities=16%  Similarity=0.185  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      +.+|++.++++ +|+  |++++.+.+..   .....|+++||+ +++|.+.+.....+.+++.++..++.|++.|+.++|
T Consensus        46 ~~~e~~~l~~l-~~~--~i~~~~~~~~~---~~~~~~lv~e~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH  119 (257)
T cd08223          46 AEQEAQLLSQL-KHP--NIVAYRESWEG---EDGLLYIVMGFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLH  119 (257)
T ss_pred             HHHHHHHHHhC-CCC--CeeeeeeeecC---CCCEEEEEecccCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            45677777777 455  99999988762   244789999999 899999987755456899999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccC-CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD-QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~-~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      ++ |++|+||+|+||+++.++.  ++|+|||.+........ .....+++.|++||....      ..++.++|+||+|+
T Consensus       120 ~~-~i~H~di~p~nil~~~~~~--~~l~df~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~Dv~slG~  190 (257)
T cd08223         120 EK-HILHRDLKTQNVFLTRTNI--IKVGDLGIARVLENQCDMASTLIGTPYYMSPELFSN------KPYNYKSDVWALGC  190 (257)
T ss_pred             hC-CeeccCCCchhEEEecCCc--EEEecccceEEecccCCccccccCCcCccChhHhcC------CCCCchhhhHHHHH
Confidence            96 9999999999999988776  99999999987643222 223467889999999873      34677999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~  182 (202)
                      ..+      .+..|..+|.
T Consensus       191 il~------~l~~g~~~~~  203 (257)
T cd08223         191 CVY------EMATLKHAFN  203 (257)
T ss_pred             HHH------HHHcCCCCCC
Confidence            322      3444666554

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.93  E-value=3.9e-25  Score=171.01  Aligned_cols=142  Identities=17%  Similarity=0.247  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|++.++.+ +||  ||+++++++...  .....+++|||+ +++|.+++...   .+++..+..++.|++.|+.||
T Consensus        52 ~~~~E~~~l~~l-~h~--~i~~~~~~~~~~--~~~~~~lv~e~~~~~~l~~~~~~~---~l~~~~~~~i~~~l~~~l~~l  123 (283)
T cd05080          52 GWKKEINILKTL-YHE--NIVKYKGCCSEQ--GGKGLQLIMEYVPLGSLRDYLPKH---KLNLAQLLLFAQQICEGMAYL  123 (283)
T ss_pred             HHHHHHHHHHhC-CCC--CEeeEEEEEecC--CCceEEEEecCCCCCCHHHHHHHc---CCCHHHHHHHHHHHHHHHHHH
Confidence            345788888888 555  999999988742  245789999999 89999998764   399999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC----CCCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD----QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~----~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      |++ |++|+||||+||+++.++.  ++|+|||.++.......    .....++..|++||.+..      ..++.++|+|
T Consensus       124 H~~-~i~H~dlkp~Nili~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~------~~~~~~~Di~  194 (283)
T cd05080         124 HSQ-HYIHRDLAARNVLLDNDRL--VKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAVECLKE------NKFSYASDVW  194 (283)
T ss_pred             HHC-CeeccccChheEEEcCCCc--EEEeecccccccCCcchhhccCCCCCCCceeeCHhHhcc------cCCCcccccH
Confidence            996 9999999999999988776  99999999987643221    112245567999998863      3367799999


Q ss_pred             hHHH
Q psy320          160 SIKM  163 (202)
Q Consensus       160 sl~~  163 (202)
                      |+|+
T Consensus       195 slG~  198 (283)
T cd05080         195 SFGV  198 (283)
T ss_pred             HHHH
Confidence            9986

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.93  E-value=4e-25  Score=168.57  Aligned_cols=142  Identities=15%  Similarity=0.177  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+..++++ +|+  |++++++++..   .+...++|+||+ +++|.+++.......+++..+..++.|++.||.||
T Consensus        45 ~~~~e~~~l~~l-~~~--~i~~~~~~~~~---~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l  118 (256)
T cd05082          45 AFLAEASVMTQL-RHS--NLVQLLGVIVE---EKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYL  118 (256)
T ss_pred             HHHHHHHHHHhC-CCC--CeeeEEEEEEc---CCCceEEEEECCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            456788888888 555  99999998653   345789999999 88999999876545589999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |+. |++|+||||+||+++.++.  ++|+|||.+.......  .....+..|++||....      ..++.++|+||+|+
T Consensus       119 H~~-~i~H~dlkp~nil~~~~~~--~kl~dfg~~~~~~~~~--~~~~~~~~y~aPE~~~~------~~~~~~~Dv~slG~  187 (256)
T cd05082         119 EAN-NFVHRDLAARNVLVSEDNV--AKVSDFGLTKEASSTQ--DTGKLPVKWTAPEALRE------KKFSTKSDVWSFGI  187 (256)
T ss_pred             HhC-CEeccccchheEEEcCCCc--EEecCCccceeccccC--CCCccceeecCHHHHcc------CCCCchhhhHHHHH
Confidence            995 9999999999999988776  9999999987653221  22334567999998873      33677999999985

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.93  E-value=2.4e-25  Score=169.33  Aligned_cols=142  Identities=12%  Similarity=0.163  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+++++++ +||  ||+++++++.    .....++||||+ +++|.+++.+.. ..+++..++.++.|++.||.||
T Consensus        39 ~~~~e~~~l~~l-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~qi~~~L~~l  110 (252)
T cd05084          39 KFLQEARILKQY-SHP--NIVRLIGVCT----QKQPIYIVMELVQGGDFLTFLRTEG-PRLKVKELIQMVENAAAGMEYL  110 (252)
T ss_pred             HHHHHHHHHHhC-CCC--CcceEEEEEc----CCCCeEEEEeeccCCcHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHH
Confidence            456788888888 555  9999999998    566899999999 899999986543 3589999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC---CCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ---SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~---~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      |+. |++|+||+|+||+++.++.  ++|+|||.+..........   ....+..|++||.+..      ..++.++|+||
T Consensus       111 H~~-~i~H~dl~p~nil~~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~Dv~s  181 (252)
T cd05084         111 ESK-HCIHRDLAARNCLVTEKNV--LKISDFGMSREEEDGVYASTGGMKQIPVKWTAPEALNY------GRYSSESDVWS  181 (252)
T ss_pred             HhC-CccccccchheEEEcCCCc--EEECccccCcccccccccccCCCCCCceeecCchhhcC------CCCChHHHHHH
Confidence            996 9999999999999988776  9999999987643211111   1122346999999863      33677999999


Q ss_pred             HHH
Q psy320          161 IKM  163 (202)
Q Consensus       161 l~~  163 (202)
                      +|+
T Consensus       182 lG~  184 (252)
T cd05084         182 FGI  184 (252)
T ss_pred             HHH
Confidence            985

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.93  E-value=1.7e-25  Score=175.85  Aligned_cols=141  Identities=16%  Similarity=0.187  Sum_probs=113.2

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+.+++.+ +||  ||+++++++..     ...+++++|+ +++|.+++.... ..++...+..++.|++.||.||
T Consensus        55 ~~~~e~~~l~~l-~h~--niv~~~g~~~~-----~~~~~v~e~~~~g~l~~~l~~~~-~~~~~~~~~~~~~qi~~~L~~L  125 (316)
T cd05108          55 EILDEAYVMASV-DNP--HVCRLLGICLT-----STVQLITQLMPFGCLLDYVREHK-DNIGSQYLLNWCVQIAKGMNYL  125 (316)
T ss_pred             HHHHHHHHHHhC-CCC--CCCeEEEEEcC-----CCceeeeecCCCCCHHHHHHhcc-ccCCHHHHHHHHHHHHHHHHHH
Confidence            345677777777 455  99999999872     3567999999 999999987654 4588999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC---CCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ---SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~---~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      |+. |++||||||+||+++.++.  ++|+|||.++.........   ....+..|++||.+..      ..++.++|+||
T Consensus       126 H~~-~iiH~dlkp~Nill~~~~~--~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~apE~~~~------~~~~~~~Di~s  196 (316)
T cd05108         126 EER-RLVHRDLAARNVLVKTPQH--VKITDFGLAKLLGADEKEYHAEGGKVPIKWMALESILH------RIYTHQSDVWS  196 (316)
T ss_pred             Hhc-CeeccccchhheEecCCCc--EEEccccccccccCCCcceeccCCccceeecChHHhcc------CCCCchhhhHH
Confidence            996 9999999999999988776  9999999998765322211   1234567999999873      34778999999


Q ss_pred             HHH
Q psy320          161 IKM  163 (202)
Q Consensus       161 l~~  163 (202)
                      +|+
T Consensus       197 lGv  199 (316)
T cd05108         197 YGV  199 (316)
T ss_pred             HHH
Confidence            985

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.93  E-value=4.1e-25  Score=175.25  Aligned_cols=157  Identities=17%  Similarity=0.186  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCC-----------------------
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKF-----------------------   61 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~-----------------------   61 (202)
                      ..+|+..++++.+|+  ||++++++|..   .+...++++||+ +++|.+++.....                       
T Consensus        57 ~~~E~~~~~~l~~h~--niv~~~~~~~~---~~~~~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (337)
T cd05054          57 LMTELKILIHIGHHL--NVVNLLGACTK---PGGPLMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQ  131 (337)
T ss_pred             HHHHHHHHHhhccCc--chhheeeeEec---CCCCEEEEEecCCCCCHHHHHHhcccccccccccccccccccccccccc
Confidence            446888888885555  99999999874   345889999999 9999998864321                       


Q ss_pred             ------------------------------------CCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCC
Q psy320           62 ------------------------------------QPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADH  105 (202)
Q Consensus        62 ------------------------------------~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~  105 (202)
                                                          .+++...+..++.|++.||.|||+. ||+||||||+||+++.++
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~-~ivHrDikp~Nill~~~~  210 (337)
T cd05054         132 RLDSVSSSQSSASSGFIEDKSLSDVEEDEEGDELYKEPLTLEDLISYSFQVARGMEFLASR-KCIHRDLAARNILLSENN  210 (337)
T ss_pred             ccccCCccccccccccccCcchhhcccchhhhHHhhcCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCcceEEEeCCC
Confidence                                                2578899999999999999999996 999999999999999877


Q ss_pred             cceeEEeecccccccccccCCC---CCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHH-hcCCCC
Q psy320          106 VYIMTLINIQQATTHQECHDQQ---SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCR-LNHQDF  181 (202)
Q Consensus       106 ~~~~~l~Dfg~a~~~~~~~~~~---~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~-~~~~~~  181 (202)
                      .  ++|+|||.+..........   ...++..|+|||.+..      ..++.++|+||+|+..+      .+. .|.++|
T Consensus       211 ~--vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~Di~SlGv~l~------el~t~g~~p~  276 (337)
T cd05054         211 V--VKICDFGLARDIYKDPDYVRKGDARLPLKWMAPESIFD------KVYTTQSDVWSFGVLLW------EIFSLGASPY  276 (337)
T ss_pred             c--EEEeccccchhcccCcchhhccCCCCCccccCcHHhcC------CCCCccccHHHHHHHHH------HHHHcCCCCC
Confidence            6  9999999998764322111   2344567999999873      34788999999986332      333 366666


Q ss_pred             C
Q psy320          182 R  182 (202)
Q Consensus       182 ~  182 (202)
                      .
T Consensus       277 ~  277 (337)
T cd05054         277 P  277 (337)
T ss_pred             C
Confidence            4

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.93  E-value=2.6e-25  Score=169.94  Aligned_cols=156  Identities=13%  Similarity=0.141  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+.+++.+ +|+  ||+++++.+.    .+...+++|||+ +++|.+++.+.....++...++.++.|++.||.||
T Consensus        47 ~~~~e~~~l~~l-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~L  119 (261)
T cd05072          47 AFLEEANLMKTL-QHD--KLVRLYAVVT----KEEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYI  119 (261)
T ss_pred             HHHHHHHHHHhC-CCC--CeeeEEEEEc----CCCCcEEEEecCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            456788888888 455  9999999987    566889999999 89999999876556689999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC--CCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ--QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~--~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      |+. +++|+||+|+||+++.++.  ++|+|||.+.........  ....++..|++||.....      .++.++|+||+
T Consensus       120 H~~-~i~H~dl~p~nili~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~------~~~~~~Di~sl  190 (261)
T cd05072         120 ERK-NYIHRDLRAANVLVSESLM--CKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFG------SFTIKSDVWSF  190 (261)
T ss_pred             HHC-CeeccccchhhEEecCCCc--EEECCCccceecCCCceeccCCCccceecCCHHHhccC------CCChhhhhhhh
Confidence            995 9999999999999998776  999999999876432211  122345679999998733      36778999999


Q ss_pred             HHHHHHHHHHHHHHh-cCCCCC
Q psy320          162 KMYTTFCEILEQCRL-NHQDFR  182 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~-~~~~~~  182 (202)
                      |+..+      .+.. |..+|.
T Consensus       191 G~~l~------~l~t~g~~p~~  206 (261)
T cd05072         191 GILLY------EIVTYGKIPYP  206 (261)
T ss_pred             HHHHH------HHHccCCCCCC
Confidence            86322      3333 666664

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.93  E-value=1.1e-25  Score=179.49  Aligned_cols=155  Identities=20%  Similarity=0.222  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++.+ +|+  ||++++++|.    .....++||||+ +++|.+.      ...++..+..++.|++.||.||
T Consensus       118 ~~~~E~~~l~~l-~h~--~iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~------~~~~~~~~~~i~~qi~~aL~~L  184 (353)
T PLN00034        118 QICREIEILRDV-NHP--NVVKCHDMFD----HNGEIQVLLEFMDGGSLEGT------HIADEQFLADVARQILSGIAYL  184 (353)
T ss_pred             HHHHHHHHHHhC-CCC--CcceeeeEec----cCCeEEEEEecCCCCccccc------ccCCHHHHHHHHHHHHHHHHHH
Confidence            355788888888 455  9999999998    566899999999 8888542      2366788889999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC-CCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ-QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~-~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |+. |++||||||+|||++.++.  +||+|||+++........ ....++..|++||.+..... .....+.++|+||+|
T Consensus       185 H~~-~ivHrDlkp~NIll~~~~~--~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~~~~~~DvwslG  260 (353)
T PLN00034        185 HRR-HIVHRDIKPSNLLINSAKN--VKIADFGVSRILAQTMDPCNSSVGTIAYMSPERINTDLN-HGAYDGYAGDIWSLG  260 (353)
T ss_pred             HHC-CEeecCCCHHHEEEcCCCC--EEEcccccceecccccccccccccCccccCccccccccc-cCcCCCcchhHHHHH
Confidence            995 9999999999999998876  999999999876432221 23568899999998753210 111224589999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +..+      .+..|..+|.
T Consensus       261 vil~------el~~g~~pf~  274 (353)
T PLN00034        261 VSIL------EFYLGRFPFG  274 (353)
T ss_pred             HHHH------HHHhCCCCCC
Confidence            7333      4555777775

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.93  E-value=2e-25  Score=172.81  Aligned_cols=163  Identities=17%  Similarity=0.211  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK-FQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ...+|+++++++ +|+  ||+++++.+.    .....++||||+ +++|.+++.... ...+++..+..++.|++.||.|
T Consensus        45 ~~~~e~~~l~~~-~~~--~i~~~~~~~~----~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~  117 (286)
T cd06622          45 QIIMELDILHKA-VSP--YIVDFYGAFF----IEGAVYMCMEYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKF  117 (286)
T ss_pred             HHHHHHHHHHhc-CCC--cHHhhhhhee----cCCeEEEEEeecCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHH
Confidence            345678888887 555  9999999998    466999999999 899998886532 2359999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      ||+.++++|+||+|+||+++.++.  ++++|||.+...... ......++..|++||.+..........++.++|+||+|
T Consensus       118 LH~~~~i~H~dl~p~nil~~~~~~--~~l~dfg~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG  194 (286)
T cd06622         118 LKEEHNIIHRDVKPTNVLVNGNGQ--VKLCDFGVSGNLVAS-LAKTNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLG  194 (286)
T ss_pred             HHhcCCEeeCCCCHHHEEECCCCC--EEEeecCCcccccCC-ccccCCCccCccCcchhcCCCCCccCCCCcccchHhHH
Confidence            996459999999999999998766  999999998765322 22234577889999998654432334457799999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +.      +..+..|..+|.+
T Consensus       195 ~i------l~~l~~g~~pf~~  209 (286)
T cd06622         195 LS------ILEMALGRYPYPP  209 (286)
T ss_pred             HH------HHHHHhCCCCCCC
Confidence            63      2244557777654

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.93  E-value=3.5e-25  Score=171.84  Aligned_cols=156  Identities=16%  Similarity=0.170  Sum_probs=123.7

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ...+|+++++.+ +|+  ||+++++++.    .....|+||||+.++|.+++.... +.+++..++.++.|++.||.|||
T Consensus        49 ~~~~E~~~l~~l-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~L~~~~~~~~-~~~~~~~~~~~~~ql~~al~~lH  120 (291)
T cd07844          49 TAIREASLLKDL-KHA--NIVTLHDIIH----TKKTLTLVFEYLDTDLKQYMDDCG-GGLSMHNVRLFLFQLLRGLAYCH  120 (291)
T ss_pred             hHHHHHHHHhhC-CCc--ceeeEEEEEe----cCCeEEEEEecCCCCHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHH
Confidence            345789989888 555  9999999998    567999999999779999887654 35899999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      +. |++|+||+|+||+++.++.  ++|+|||.++...... ......++..|++||.+..     ...++.++|+||+|+
T Consensus       121 ~~-~i~H~dl~p~nil~~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-----~~~~~~~~Dv~slG~  192 (291)
T cd07844         121 QR-RVLHRDLKPQNLLISERGE--LKLADFGLARAKSVPSKTYSNEVVTLWYRPPDVLLG-----STEYSTSLDMWGVGC  192 (291)
T ss_pred             hC-CeecccCCHHHEEEcCCCC--EEECccccccccCCCCccccccccccccCCcHHhhc-----CcccCcHHHHHHHHH
Confidence            96 9999999999999998876  9999999987643221 1122346778999998763     233567899999986


Q ss_pred             HHHHHHHHHHHHhcCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~  182 (202)
                      ..      ..+..|.++|.
T Consensus       193 il------~~l~~g~~~~~  205 (291)
T cd07844         193 IF------YEMATGRPLFP  205 (291)
T ss_pred             HH------HHHHhCCCCCC
Confidence            32      24555777664

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.93  E-value=3.9e-25  Score=169.07  Aligned_cols=157  Identities=17%  Similarity=0.197  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++.+ +||  ||+++++.+.    .+...|+++||+ +++|.+++.+..  .+++..+..++.|++.||.|+
T Consensus        39 ~~~~e~~~l~~l-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~~i~~~l~~l  109 (262)
T cd05572          39 HIFSEKEILEEC-NHP--FIVKLYRTFK----DKKYIYMLMEYCLGGELWTILRDRG--LFDEYTARFYIACVVLAFEYL  109 (262)
T ss_pred             HHHHHHHHHHhC-CCC--CEeeeeeeEE----cCCccEEEEecCCCCcHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHH
Confidence            345677777777 555  9999999988    567899999999 899999997753  489999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |+. +++|+||+|+||+++.++.  ++|+|||.+.............++..|++||.+..      ..++.++|+||+|+
T Consensus       110 H~~-~~~h~dl~~~nilv~~~~~--~~l~df~~~~~~~~~~~~~~~~~~~~~~~PE~~~~------~~~~~~~Di~slG~  180 (262)
T cd05572         110 HNR-GIIYRDLKPENLLLDSNGY--VKLVDFGFAKKLKSGQKTWTFCGTPEYVAPEIILN------KGYDFSVDYWSLGI  180 (262)
T ss_pred             hhC-CcccCCCCHHHEEEcCCCC--EEEeeCCcccccCcccccccccCCcCccChhHhcC------CCCCChhhhhhhHH
Confidence            995 9999999999999998876  99999999987654322233467889999999863      33677999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRPDP  185 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~  185 (202)
                      ..      ..+..|.+++....
T Consensus       181 il------~~l~~g~~p~~~~~  196 (262)
T cd05572         181 LL------YELLTGRPPFGEDD  196 (262)
T ss_pred             HH------HHHHhCCCCcCCCC
Confidence            32      24455777776544

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.93  E-value=4.4e-25  Score=168.79  Aligned_cols=144  Identities=16%  Similarity=0.169  Sum_probs=117.0

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +.+.+|++.++++ +||  ||+++++++.    .....|+||||+ +++|.+++.......++...+..++.|++.|+.+
T Consensus        46 ~~~~~e~~~l~~l-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~  118 (261)
T cd05068          46 KDFLAEAQIMKKL-RHP--KLIQLYAVCT----LEEPIYIVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAY  118 (261)
T ss_pred             HHHHHHHHHHHHC-CCC--CccceeEEEe----cCCCeeeeeecccCCcHHHHHhccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            3456788888888 455  9999999988    466889999999 9999999977654568999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC--CCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ--SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~--~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      ||++ |++|+||+|+||+++.++.  ++|+|||.+..........  .......|++||....      ..++.++|+||
T Consensus       119 lH~~-~i~H~dl~p~Nil~~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~Di~s  189 (261)
T cd05068         119 LEAQ-NYIHRDLAARNVLVGENNI--CKVADFGLARVIKEDIYEAREGAKFPIKWTAPEAALY------NRFSIKSDVWS  189 (261)
T ss_pred             HHhC-CeeeccCCcceEEEcCCCC--EEECCcceEEEccCCcccccCCCcCceeccCcccccc------CCCCchhhHHH
Confidence            9996 9999999999999998876  9999999998765221111  1122347999998873      33677999999


Q ss_pred             HHH
Q psy320          161 IKM  163 (202)
Q Consensus       161 l~~  163 (202)
                      +|+
T Consensus       190 lG~  192 (261)
T cd05068         190 FGI  192 (261)
T ss_pred             HHH
Confidence            985

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.93  E-value=3.1e-25  Score=169.46  Aligned_cols=141  Identities=15%  Similarity=0.118  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      +.+|+.+++.+ +|  |||+++++++.    .+...++||||+ +++|.+++.... ..+++..++.++.|++.|+.|||
T Consensus        46 ~~~e~~~l~~~-~h--~~iv~~~~~~~----~~~~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH  117 (258)
T cd05078          46 FFEAASMMSQL-SH--KHLVLNYGVCV----CGDESIMVQEYVKFGSLDTYLKKNK-NLINISWKLEVAKQLAWALHFLE  117 (258)
T ss_pred             HHHHHHHHHhC-CC--CChhheeeEEE----eCCCcEEEEecCCCCcHHHHHhcCC-CCCCHHHHHHHHHHHHHHHHHHH
Confidence            34566666666 45  49999999998    456789999999 899999987654 35899999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcc------eeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcch
Q psy320           85 TKHNLVHTSIKPESIFFKADHVY------IMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDP  158 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~------~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Di  158 (202)
                      ++ |++||||||+||+++.++..      .++++|||.+.....   .....++..|++||.+...     ..++.++|+
T Consensus       118 ~~-~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~g~~~~~~~---~~~~~~~~~y~aPE~~~~~-----~~~~~~~Di  188 (258)
T cd05078         118 DK-GLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISITVLP---KEILLERIPWVPPECIENP-----QNLSLAADK  188 (258)
T ss_pred             HC-CeecCCCccceEEEecccccccCCCceEEecccccccccCC---chhccccCCccCchhccCC-----CCCCchhhH
Confidence            96 99999999999999876541      379999999876532   1224567789999998732     235678999


Q ss_pred             hhHHH
Q psy320          159 TSIKM  163 (202)
Q Consensus       159 wsl~~  163 (202)
                      ||+|+
T Consensus       189 wslG~  193 (258)
T cd05078         189 WSFGT  193 (258)
T ss_pred             HHHHH
Confidence            99975

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.93  E-value=5.6e-25  Score=170.06  Aligned_cols=159  Identities=20%  Similarity=0.257  Sum_probs=123.2

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      +.+|+++++.+ +||  ||+++++.|.    .+...++|+||+ +++|..++.+.. +++++..+..++.|++.||.|||
T Consensus        49 ~~~e~~~l~~l-~h~--~ii~~~~~~~----~~~~~~~v~e~~~~~~l~~~~~~~~-~~l~~~~~~~~~~qi~~~L~~LH  120 (282)
T cd06643          49 YMVEIDILASC-DHP--NIVKLLDAFY----YENNLWILIEFCAGGAVDAVMLELE-RPLTEPQIRVVCKQTLEALNYLH  120 (282)
T ss_pred             HHHHHHHHHHC-CCC--CeeeEEEEEe----eCCEEEEEEEecCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHH
Confidence            45677777777 455  9999999998    466899999999 889988776533 45899999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      +. |++|+||+|+||+++.++.  ++++|||.+....... ......++..|++||.+.... .....++.++|+||+|+
T Consensus       121 ~~-~i~H~dlkp~nili~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-~~~~~~~~~~Dv~slGv  196 (282)
T cd06643         121 EN-KIIHRDLKAGNILFTLDGD--IKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCET-SKDRPYDYKADVWSLGI  196 (282)
T ss_pred             HC-CeeecCCCcccEEEccCCC--EEEccccccccccccccccccccccccccCHhhccccC-CCCCCCCccchhhhHHH
Confidence            95 9999999999999988776  9999999987654321 222456888999999985322 12334667999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~  182 (202)
                      ..+      .+..|.++|.
T Consensus       197 il~------el~~g~~p~~  209 (282)
T cd06643         197 TLI------EMAQIEPPHH  209 (282)
T ss_pred             HHH------HHccCCCCcc
Confidence            322      3444666554

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.93  E-value=4.5e-25  Score=169.17  Aligned_cols=143  Identities=16%  Similarity=0.163  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+.+++++ +||  ||+++++++.    .+...++||||+ +++|.+++...  +.+++..+..++.|++.|+.|||
T Consensus        53 ~~~e~~~l~~~-~h~--~ii~~~~~~~----~~~~~~iv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH  123 (267)
T cd06646          53 IQQEIFMVKEC-KHC--NIVAYFGSYL----SREKLWICMEYCGGGSLQDIYHVT--GPLSELQIAYVCRETLQGLAYLH  123 (267)
T ss_pred             HHHHHHHHHhc-CCC--CeeeeeEEEE----eCCEEEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH
Confidence            45678888777 455  9999999998    456899999999 89999988765  35899999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccC-CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD-QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~-~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      +. |++|+|++|+||+++.++.  ++|+|||.+........ .....++..|++||.+....   ...++.++|+||+|+
T Consensus       124 ~~-~i~H~dl~p~nill~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~---~~~~~~~~Dvws~G~  197 (267)
T cd06646         124 SK-GKMHRDIKGANILLTDNGD--VKLADFGVAAKITATIAKRKSFIGTPYWMAPEVAAVEK---NGGYNQLCDIWAVGI  197 (267)
T ss_pred             HC-CccccCCCHHHEEECCCCC--EEECcCccceeecccccccCccccCccccCHhHccccc---CCCCcchhhHHHHHH
Confidence            96 9999999999999987776  99999999987643222 22346788999999875322   334567899999986

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.93  E-value=5.3e-25  Score=169.80  Aligned_cols=141  Identities=16%  Similarity=0.118  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      +.+|+..++.+ +  ||||+++++++.    .....++||||+ +++|..++.+.. +++++..+..++.|++.||.|||
T Consensus        63 ~~~~~~~~~~l-~--h~niv~~~~~~~----~~~~~~lv~ey~~~g~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH  134 (274)
T cd05076          63 FFETASLMSQV-S--HIHLAFVHGVCV----RGSENIMVEEFVEHGPLDVCLRKEK-GRVPVAWKITVAQQLASALSYLE  134 (274)
T ss_pred             HHHHHHHHhcC-C--CCCeeeEEEEEE----eCCceEEEEecCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHH
Confidence            34556666655 4  459999999998    466889999999 899998886543 46899999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCc-----ceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           85 TKHNLVHTSIKPESIFFKADHV-----YIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~-----~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      ++ +++||||||+||+++..+.     ..++++|||.+......   ....++..|++||.+..     ...++.++|+|
T Consensus       135 ~~-~iiH~dlkp~Nill~~~~~~~~~~~~~kl~d~g~~~~~~~~---~~~~~~~~~~aPe~~~~-----~~~~~~~~Dv~  205 (274)
T cd05076         135 DK-NLVHGNVCAKNILLARLGLAEGTSPFIKLSDPGVSFTALSR---EERVERIPWIAPECVPG-----GNSLSTAADKW  205 (274)
T ss_pred             cC-CccCCCCCcccEEEeccCcccCccceeeecCCccccccccc---cccccCCcccCchhhcC-----CCCCCcHHHHH
Confidence            96 9999999999999986432     23899999987654321   12346678999998862     23367799999


Q ss_pred             hHHH
Q psy320          160 SIKM  163 (202)
Q Consensus       160 sl~~  163 (202)
                      |+|+
T Consensus       206 slG~  209 (274)
T cd05076         206 SFGT  209 (274)
T ss_pred             HHHH
Confidence            9985

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.93  E-value=5.8e-25  Score=167.47  Aligned_cols=144  Identities=16%  Similarity=0.197  Sum_probs=120.2

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC-------CCCCCHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK-------FQPAPLVVAKIIVNQ   75 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~-------~~~~~~~~~~~~~~q   75 (202)
                      ....+|++.++.++ |+  ||+++++++.    .....++||||+ +++|.+++....       ...+++..++.++.|
T Consensus        41 ~~~~~e~~~l~~~~-~~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (262)
T cd00192          41 KDFLKEARVMKKLG-HP--NVVRLLGVCT----EEEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQ  113 (262)
T ss_pred             HHHHHHHHHHhhcC-CC--Chheeeeeec----CCCceEEEEEeccCCcHHHHHhhccccccccccccCCHHHHHHHHHH
Confidence            34567888888884 55  9999999998    467899999999 999999997751       245999999999999


Q ss_pred             HHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc---CCCCCCCCccchhhHHHHhhhhccCCCC
Q psy320           76 ILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH---DQQSSSKTKSKIFCEILEQCRLNQDFRL  152 (202)
Q Consensus        76 i~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~---~~~~~~~~~~~~ape~~~~~~~~~~~~~  152 (202)
                      ++.||.+||++ |++|+||+|+||+++.++.  ++|+|||.+.......   ......++..|++||.+...      .+
T Consensus       114 l~~al~~lH~~-~i~H~di~p~nili~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~------~~  184 (262)
T cd00192         114 IAKGMEYLASK-KFVHRDLAARNCLVGEDLV--VKISDFGLSRDVYDDDYYRKKTGGKLPIRWMAPESLKDG------IF  184 (262)
T ss_pred             HHHHHHHHHcC-CcccCccCcceEEECCCCc--EEEcccccccccccccccccccCCCcCccccCHHHhccC------Cc
Confidence            99999999996 9999999999999998876  9999999998875432   12234677789999988733      36


Q ss_pred             CCCcchhhHHH
Q psy320          153 DPRVDPTSIKM  163 (202)
Q Consensus       153 ~~~~Diwsl~~  163 (202)
                      +.++|+||+|+
T Consensus       185 ~~~~Di~slG~  195 (262)
T cd00192         185 TSKSDVWSFGV  195 (262)
T ss_pred             chhhccHHHHH
Confidence            77999999986

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=5.9e-25  Score=169.71  Aligned_cols=160  Identities=18%  Similarity=0.219  Sum_probs=125.6

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+++++.+ +||  ||+++++.+.    .+...|+||||+ +++|.+++.... +.+++..++.++.|++.|+.||
T Consensus        48 ~~~~e~~~l~~l-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~~~-~~l~~~~~~~~~~ql~~~l~~l  119 (280)
T cd06611          48 DFMVEIDILSEC-KHP--NIVGLYEAYF----YENKLWILIEFCDGGALDSIMLELE-RGLTEPQIRYVCRQMLEALNFL  119 (280)
T ss_pred             HHHHHHHHHHhC-CCC--ceeEEEEEEe----cCCeEEEEeeccCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHH
Confidence            345688888888 455  9999999998    566899999999 889999987654 4599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |++ |++|+||+|+||+++.++.  ++|+|||.+....... ......++..|++||.+..... ....++.++|+||+|
T Consensus       120 h~~-~i~h~dl~p~nili~~~~~--~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~-~~~~~~~~sDi~slG  195 (280)
T cd06611         120 HSH-KVIHRDLKAGNILLTLDGD--VKLADFGVSAKNKSTLQKRDTFIGTPYWMAPEVVACETF-KDNPYDYKADIWSLG  195 (280)
T ss_pred             HHC-CcccCCCChhhEEECCCCC--EEEccCccchhhcccccccceeecchhhcCHHHHhhccc-CCCCCCccccHHHHH
Confidence            996 9999999999999988776  9999999987653321 1223467888999999874321 123456789999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +..+      .+..|.++|.
T Consensus       196 ~il~------~l~~g~~p~~  209 (280)
T cd06611         196 ITLI------ELAQMEPPHH  209 (280)
T ss_pred             HHHH------HHHhCCCCcc
Confidence            6333      4555766664

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.93  E-value=3.4e-25  Score=176.70  Aligned_cols=156  Identities=20%  Similarity=0.244  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecC--CceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGI--NGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~--~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ..+|+++++++ +|+  ||++++++|.....  +....|+||||+.++|.+.+...    ++...+..++.|++.||.||
T Consensus        62 ~~~E~~~l~~l-~h~--~iv~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~----l~~~~~~~~~~ql~~aL~~L  134 (353)
T cd07850          62 AYRELVLMKLV-NHK--NIIGLLNVFTPQKSLEEFQDVYLVMELMDANLCQVIQMD----LDHERMSYLLYQMLCGIKHL  134 (353)
T ss_pred             HHHHHHHHHhc-CCC--CCcceeeeeccCCCccccCcEEEEEeccCCCHHHHHhhc----CCHHHHHHHHHHHHHHHHHH
Confidence            44688888887 555  99999999874331  23468999999988998887543    88999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |+. |++|+||||+||+++.++.  ++|+|||.++............++..|++||.+..      ..++.++|+||+|+
T Consensus       135 H~~-gi~H~dlkp~Nil~~~~~~--~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~DvwslG~  205 (353)
T cd07850         135 HSA-GIIHRDLKPSNIVVKSDCT--LKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILG------MGYKENVDIWSVGC  205 (353)
T ss_pred             HhC-CeeeCCCCHHHEEECCCCC--EEEccCccceeCCCCCCCCCCcccccccCHHHHhC------CCCCCchhhHhHHH
Confidence            996 9999999999999998876  99999999987654333334567888999999873      34778999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~  183 (202)
                      ..+      .+..|..+|..
T Consensus       206 ~l~------~l~~g~~pf~~  219 (353)
T cd07850         206 IMG------EMIRGTVLFPG  219 (353)
T ss_pred             HHH------HHHHCCCCCCC
Confidence            322      44457777653

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.93  E-value=4.5e-25  Score=170.61  Aligned_cols=142  Identities=12%  Similarity=0.104  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC--------------CCCCCHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK--------------FQPAPLVVAK   70 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~--------------~~~~~~~~~~   70 (202)
                      +.+|+.++..+ +||  ||+++++++.    .....++++||+ +++|.+++....              ...+++..+.
T Consensus        55 ~~~e~~~~~~l-~h~--~iv~~~~~~~----~~~~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (283)
T cd05091          55 FKHEAMMRSRL-QHP--NIVCLLGVVT----KEQPLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFV  127 (283)
T ss_pred             HHHHHHHHhcC-CCC--CcCeEEEEEc----CCCceEEEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHH
Confidence            44566666666 454  9999999998    566899999999 899999985321              2347888999


Q ss_pred             HHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC---CCCCCccchhhHHHHhhhhc
Q psy320           71 IIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ---SSSKTKSKIFCEILEQCRLN  147 (202)
Q Consensus        71 ~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~---~~~~~~~~~ape~~~~~~~~  147 (202)
                      .++.|++.||.|+|+. |++||||||+||+++.++.  +||+|||.++.........   ...+++.|+|||.+...   
T Consensus       128 ~~~~ql~~aL~~lH~~-gi~H~dlkp~Nil~~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~---  201 (283)
T cd05091         128 HIVTQIAAGMEFLSSH-HVVHKDLATRNVLVFDKLN--VKISDLGLFREVYAADYYKLMGNSLLPIRWMSPEAIMYG---  201 (283)
T ss_pred             HHHHHHHHHHHHHHHc-CccccccchhheEecCCCc--eEecccccccccccchheeeccCccCCccccCHHHHhcC---
Confidence            9999999999999995 9999999999999987766  9999999988654322111   22456789999998733   


Q ss_pred             cCCCCCCCcchhhHHH
Q psy320          148 QDFRLDPRVDPTSIKM  163 (202)
Q Consensus       148 ~~~~~~~~~Diwsl~~  163 (202)
                         .++.++|+||+|+
T Consensus       202 ---~~~~~~Dv~slG~  214 (283)
T cd05091         202 ---KFSIDSDIWSYGV  214 (283)
T ss_pred             ---CCCcchhHHHHHH
Confidence               3677999999974

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.93  E-value=4.1e-25  Score=170.39  Aligned_cols=142  Identities=15%  Similarity=0.165  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCC--------CCCCHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKF--------QPAPLVVAKIIVNQI   76 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~--------~~~~~~~~~~~~~qi   76 (202)
                      +.+|+.+++.+ +||  ||+++++++.    .+...++||||+ +++|.+++.....        ..++...+..++.|+
T Consensus        56 ~~~e~~~l~~l-~~~--~iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  128 (277)
T cd05062          56 FLNEASVMKEF-NCH--HVVRLLGVVS----QGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEI  128 (277)
T ss_pred             HHHHHHHHHhC-CCC--CeeeEEEEEc----CCCCeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHH
Confidence            45677777776 455  9999999987    566899999999 8999999875321        235677889999999


Q ss_pred             HHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC---CCCCCCccchhhHHHHhhhhccCCCCC
Q psy320           77 LEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ---QSSSKTKSKIFCEILEQCRLNQDFRLD  153 (202)
Q Consensus        77 ~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~---~~~~~~~~~~ape~~~~~~~~~~~~~~  153 (202)
                      +.|+.|||+. |++|+||||+||+++.++.  ++|+|||.+.........   ....++..|+|||.+..      ..++
T Consensus       129 ~~~l~~lH~~-~~vH~dlkp~Nil~~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~  199 (277)
T cd05062         129 ADGMAYLNAN-KFVHRDLAARNCMVAEDFT--VKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKD------GVFT  199 (277)
T ss_pred             HHHHHHHHHC-CcccCCcchheEEEcCCCC--EEECCCCCccccCCcceeecCCCCccCHhhcChhHhhc------CCcC
Confidence            9999999995 9999999999999998776  999999998765322111   12244678999999873      3367


Q ss_pred             CCcchhhHHH
Q psy320          154 PRVDPTSIKM  163 (202)
Q Consensus       154 ~~~Diwsl~~  163 (202)
                      .++|+||+|+
T Consensus       200 ~~~Di~slG~  209 (277)
T cd05062         200 TYSDVWSFGV  209 (277)
T ss_pred             chhHHHHHHH
Confidence            8999999985

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>KOG0665|consensus

Probab=99.93  E-value=8e-27  Score=175.74  Aligned_cols=161  Identities=22%  Similarity=0.299  Sum_probs=130.8

Q ss_pred             CchHHHHHHHHHHHHhcCCCccceeeeeeeEEecC--CceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Q psy320            2 HTNYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGI--NGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEG   79 (202)
Q Consensus         2 ~~~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~--~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~   79 (202)
                      |.+.+.+|...+..+ +|+  ||++++.+|..+..  .....|+|||+|..+|.+++...    ++-..++.++.|++.|
T Consensus        58 ~akra~rel~l~~~v-~~~--nii~l~n~ftP~~~l~~~~e~y~v~e~m~~nl~~vi~~e----lDH~tis~i~yq~~~~  130 (369)
T KOG0665|consen   58 HAKRAYRELKLMKCV-NHK--NIISLLNVFTPQKTLEEFQEVYLVMELMDANLCQVILME----LDHETISYILYQMLCG  130 (369)
T ss_pred             cchhhhhhhhhhhhh-ccc--ceeeeeeccCccccHHHHHhHHHHHHhhhhHHHHHHHHh----cchHHHHHHHHHHHHH
Confidence            556778898888888 555  99999999984321  23588999999999999999844    7789999999999999


Q ss_pred             HHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           80 LNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        80 l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      ++|+|+ .||+||||||+||++..+..  +|+.|||.|+.....-.-.+...+..|.|||++.+..      |...+|||
T Consensus       131 ik~lhs-~~IihRdLkPsnivv~~~~~--lKi~dfg~ar~e~~~~~mtpyVvtRyyrapevil~~~------~ke~vdiw  201 (369)
T KOG0665|consen  131 IKHLHS-AGIIHRDLKPSNIVVNSDCT--LKILDFGLARTEDTDFMMTPYVVTRYYRAPEVILGMG------YKENVDIW  201 (369)
T ss_pred             HHHHHh-cceeecccCcccceecchhh--eeeccchhhcccCcccccCchhheeeccCchheeccC------Ccccchhh
Confidence            999999 59999999999999999887  9999999999875442333457888999999999655      77899999


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCCCC
Q psy320          160 SIKMYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       160 sl~~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      |+|+      ++..++.|..-|+..
T Consensus       202 SvGc------i~gEli~~~Vlf~g~  220 (369)
T KOG0665|consen  202 SVGC------IMGELILGTVLFPGK  220 (369)
T ss_pred             hhhh------HHHHHhhceEEecCc
Confidence            9987      444555566555543

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.93  E-value=5.6e-25  Score=172.53  Aligned_cols=159  Identities=18%  Similarity=0.267  Sum_probs=125.7

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|++.++.+ +|+  ||++++++|.    .....+++|||+ +++|.+++.......+++..++.++.|++.||.||
T Consensus        45 ~~~~Ei~~l~~l-~h~--~i~~~~~~~~----~~~~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~L  117 (314)
T cd08216          45 LLQQEIITSRQL-QHP--NILPYVTSFI----VDSELYVVSPLMAYGSCEDLLKTHFPEGLPELAIAFILKDVLNALDYI  117 (314)
T ss_pred             HHHHHHHHHHhc-CCc--chhhhhheee----cCCeEEEEEeccCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHH
Confidence            456788888888 455  9999999998    566899999999 89999999876545699999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC--------CCCCCCCccchhhHHHHhhhhccCCCCCCC
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD--------QQSSSKTKSKIFCEILEQCRLNQDFRLDPR  155 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~--------~~~~~~~~~~~ape~~~~~~~~~~~~~~~~  155 (202)
                      |+. +++|+||+|+||+++.++.  ++++|||.+........        .....++..|++||.+....    ..++.+
T Consensus       118 H~~-~ivH~dlk~~Nili~~~~~--~kl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~----~~~~~~  190 (314)
T cd08216         118 HSK-GFIHRSVKASHILLSGDGK--VVLSGLRYSVSMIKHGKRQRVVHDFPKSSVKNLPWLSPEVLQQNL----QGYNEK  190 (314)
T ss_pred             HHC-CeecCCCCcceEEEecCCc--eEEecCccceeeccccccccccccccccccccccccCHHHhcCCC----CCCCcc
Confidence            996 9999999999999998776  99999998876533221        11235667899999987321    336779


Q ss_pred             cchhhHHHHHHHHHHHHHHHhcCCCCCC
Q psy320          156 VDPTSIKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       156 ~Diwsl~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +|+||+|+.      +-.+..|..+|..
T Consensus       191 ~Diws~G~i------l~el~~g~~pf~~  212 (314)
T cd08216         191 SDIYSVGIT------ACELANGHVPFKD  212 (314)
T ss_pred             hhHHHHHHH------HHHHHhCCCCCCC
Confidence            999999863      2245557777653

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>KOG1095|consensus

Probab=99.93  E-value=1.3e-25  Score=192.91  Aligned_cols=165  Identities=14%  Similarity=0.186  Sum_probs=131.8

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC-----CCCCCHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK-----FQPAPLVVAKIIVNQILE   78 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~-----~~~~~~~~~~~~~~qi~~   78 (202)
                      .+.+|..++..+ +||  ||++++|++.    +....++++||| +|+|.+++++..     ...+.......++.+|+.
T Consensus       741 ~Fl~Ea~~m~~f-~Hp--Niv~liGv~l----~~~~~~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~  813 (1025)
T KOG1095|consen  741 DFLKEALLMSKF-DHP--NIVSLIGVCL----DSGPPLILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAK  813 (1025)
T ss_pred             HHHHHHHHHhcC-CCc--ceeeEEEeec----CCCCcEEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhh
Confidence            345666666666 455  9999999999    466889999999 999999998762     234888999999999999


Q ss_pred             HHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCC---CCCCccchhhHHHHhhhhccCCCCCCC
Q psy320           79 GLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQS---SSKTKSKIFCEILEQCRLNQDFRLDPR  155 (202)
Q Consensus        79 ~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~---~~~~~~~~ape~~~~~~~~~~~~~~~~  155 (202)
                      |++||+++ .+|||||...|+|++....  +|++|||+|+........+.   ......||+||.+..      ..++.+
T Consensus       814 G~~YLe~~-~fvHRDLAaRNCLL~~~r~--VKIaDFGlArDiy~~~yyr~~~~a~lPvkWm~PEsl~d------~iFtsk  884 (1025)
T KOG1095|consen  814 GMNYLESK-HFVHRDLAARNCLLDERRV--VKIADFGLARDIYDKDYYRKHGEAMLPVKWMPPESLKD------GIFTSK  884 (1025)
T ss_pred             hhHHHHhC-CCcCcchhhhheeecccCc--EEEcccchhHhhhhchheeccCccccceecCCHHHHhh------cccccc
Confidence            99999997 9999999999999998755  99999999995433222221   233468999999994      448999


Q ss_pred             cchhhHH--HHHHHH-----------------------------------HHHHHHHhcCCCCCCCC
Q psy320          156 VDPTSIK--MYTTFC-----------------------------------EILEQCRLNHQDFRPDP  185 (202)
Q Consensus       156 ~Diwsl~--~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~  185 (202)
                      +|+||+|  +|++|+                                   +++.+|+..+|..||+.
T Consensus       885 SDvWsFGVllWEifslG~~PY~~~~n~~v~~~~~~ggRL~~P~~CP~~ly~lM~~CW~~~pe~RP~F  951 (1025)
T KOG1095|consen  885 SDVWSFGVLLWEIFSLGATPYPSRSNFEVLLDVLEGGRLDPPSYCPEKLYQLMLQCWKHDPEDRPSF  951 (1025)
T ss_pred             cchhhhHHHHHHHHhCCCCCCCCcchHHHHHHHHhCCccCCCCCCChHHHHHHHHHccCChhhCccH
Confidence            9999996  456655                                   78888888888888765

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=5e-25  Score=173.03  Aligned_cols=155  Identities=21%  Similarity=0.225  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|++.++.+ +|+  ||+++++.+.    .+...|+||||+ +++|.+++.+.....+++..+..++.|++.||.|||
T Consensus        48 ~~~e~~~l~~l-~~~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH  120 (316)
T cd05574          48 VLTEQEILATL-DHP--FLPTLYASFQ----TETYLCLVMDYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLH  120 (316)
T ss_pred             HHHHHHHHHhC-CCC--Cchhheeeee----cCCEEEEEEEecCCCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHH
Confidence            45677888888 455  9999999998    567899999999 899999988665567999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccC------------------------------CCCCCCCcc
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD------------------------------QQSSSKTKS  134 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~------------------------------~~~~~~~~~  134 (202)
                      +. |++|+||||+||+++.++.  ++|+|||.+........                              .....++..
T Consensus       121 ~~-~i~H~dlkp~Nili~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  197 (316)
T cd05574         121 LL-GIVYRDLKPENILLHESGH--IMLSDFDLSKQSDVEPPPVSKALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEE  197 (316)
T ss_pred             HC-CeeccCCChHHeEEcCCCC--EEEeecchhhcccccccccccccccccccccccccchhhhcccccCCCCCCcCccC
Confidence            96 9999999999999998776  99999999876432110                              001256778


Q ss_pred             chhhHHHHhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCCCC
Q psy320          135 KIFCEILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       135 ~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      |++||.+...      .++.++|+||+|+..+      .+..|..+|.
T Consensus       198 y~aPE~~~~~------~~~~~~Di~slG~ll~------~l~~g~~pf~  233 (316)
T cd05574         198 YIAPEVISGD------GHGSAVDWWTLGILLY------EMLYGTTPFK  233 (316)
T ss_pred             CcCHHHHcCC------CCCchHHHHHHHHHHH------HHhhCCCCCC
Confidence            9999998733      3677999999986322      4445666664

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.93  E-value=8e-25  Score=167.80  Aligned_cols=142  Identities=13%  Similarity=0.167  Sum_probs=115.6

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      +.+|+..++++ +||  ||+++++++.    .+...++||||+ +++|.+++.... +.++...+..++.|++.|+.|||
T Consensus        52 ~~~e~~~l~~l-~h~--~i~~~~~~~~----~~~~~~iv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~Lh  123 (266)
T cd05033          52 FLTEASIMGQF-DHP--NIIRLEGVVT----KSRPVMIITEYMENGSLDKFLREND-GKFTVGQLVGMLRGIASGMKYLS  123 (266)
T ss_pred             HHHHHHHHHhC-CCC--CcceEeEEEe----cCCceEEEEEcCCCCCHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHH
Confidence            45678888777 455  9999999988    466899999999 899999987654 46899999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccC---CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD---QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      +. +++|+||+|+||+++.++.  ++++|||.+........   .....++..|++||.+...      .++.++|+||+
T Consensus       124 ~~-~i~H~di~p~nili~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~------~~~~~~Dv~sl  194 (266)
T cd05033         124 EM-NYVHRDLAARNILVNSNLV--CKVSDFGLSRRLEDSEATYTTKGGKIPIRWTAPEAIAYR------KFTSASDVWSF  194 (266)
T ss_pred             hC-CcccCCCCcceEEEcCCCC--EEECccchhhcccccccceeccCCCCCccccChhhhccC------CCccccchHHH
Confidence            96 9999999999999998776  99999999988742111   1122345679999988743      36789999999


Q ss_pred             HHH
Q psy320          162 KMY  164 (202)
Q Consensus       162 ~~~  164 (202)
                      |+.
T Consensus       195 G~~  197 (266)
T cd05033         195 GIV  197 (266)
T ss_pred             HHH
Confidence            863

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.93  E-value=4.9e-25  Score=168.36  Aligned_cols=143  Identities=18%  Similarity=0.195  Sum_probs=116.8

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|++.++.+ +|+  ||+++++++.    .+...++||||+ +++|.+++.....+.++...+..++.|++.|+.||
T Consensus        48 ~~~~e~~~l~~l-~~~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~al~~l  120 (261)
T cd05148          48 DFQKEVQALKRL-RHK--HLISLFAVCS----VGEPVYIITELMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYL  120 (261)
T ss_pred             HHHHHHHHHhcC-CCc--chhheeeeEe----cCCCeEEEEeecccCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            345677777777 455  9999999998    566899999999 89999999876656789999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC-CCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ-QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~-~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |+. |++|+||+|+||+++.++.  ++++|||.+......... ....++..|++||....      ..++.++|+||+|
T Consensus       121 H~~-~i~h~dl~~~nilv~~~~~--~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~PE~~~~------~~~~~~~DiwslG  191 (261)
T cd05148         121 EEQ-NSIHRDLAARNILVGEDLV--CKVADFGLARLIKEDVYLSSDKKIPYKWTAPEAASH------GTFSTKSDVWSFG  191 (261)
T ss_pred             HHC-CeeccccCcceEEEcCCce--EEEccccchhhcCCccccccCCCCceEecCHHHHcc------CCCCchhhHHHHH
Confidence            996 9999999999999998776  999999999775432211 12345567999998863      3367799999998


Q ss_pred             H
Q psy320          163 M  163 (202)
Q Consensus       163 ~  163 (202)
                      +
T Consensus       192 ~  192 (261)
T cd05148         192 I  192 (261)
T ss_pred             H
Confidence            5

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>KOG4279|consensus

Probab=99.93  E-value=2.7e-26  Score=188.13  Aligned_cols=157  Identities=16%  Similarity=0.179  Sum_probs=129.9

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCC--CHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPA--PLVVAKIIVNQILEGLN   81 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~--~~~~~~~~~~qi~~~l~   81 (202)
                      ...+||...++++ |.  |||+++|.+..    +.++-+.||-+ ||||.++++..= +++  .+.++..+.+||+.||+
T Consensus       618 PLhEEIaLH~~Lr-Hk--NIVrYLGs~se----nGf~kIFMEqVPGGSLSsLLrskW-GPlKDNEstm~fYtkQILeGLk  689 (1226)
T KOG4279|consen  618 PLHEEIALHSTLR-HK--NIVRYLGSVSE----NGFFKIFMEQVPGGSLSSLLRSKW-GPLKDNESTMNFYTKQILEGLK  689 (1226)
T ss_pred             cHHHHHHHHHHHh-hH--hHHHHhhccCC----CCeEEEEeecCCCCcHHHHHHhcc-CCCccchhHHHHHHHHHHHHhh
Confidence            3457888888884 44  99999999984    45888999999 999999997543 445  78899999999999999


Q ss_pred             HHHhhCCccccCCCCCceeeecC-CcceeEEeeccccccccc-ccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           82 HLHTKHNLVHTSIKPESIFFKAD-HVYIMTLINIQQATTHQE-CHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        82 ~lh~~~~ivH~dl~p~nil~~~~-~~~~~~l~Dfg~a~~~~~-~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      |||+. .|||||||-+|+|++.- |.  +||+|||.++.... ...-..+.||.-|||||++...+    +.|++++|||
T Consensus       690 YLHen-~IVHRDIKGDNVLvNTySGv--lKISDFGTsKRLAginP~TETFTGTLQYMAPEvIDqG~----RGYG~aADIW  762 (1226)
T KOG4279|consen  690 YLHEN-KIVHRDIKGDNVLVNTYSGV--LKISDFGTSKRLAGINPCTETFTGTLQYMAPEVIDQGP----RGYGKAADIW  762 (1226)
T ss_pred             hhhhc-ceeeccccCCcEEEeeccce--EEecccccchhhccCCccccccccchhhhChHhhccCC----cCCCchhhhh
Confidence            99996 99999999999999854 44  99999999998753 23344678999999999999765    7799999999


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCC
Q psy320          160 SIKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       160 sl~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      |+|+      .+-.|..|+|||-
T Consensus       763 S~GC------T~vEMATGrPPF~  779 (1226)
T KOG4279|consen  763 SFGC------TMVEMATGRPPFV  779 (1226)
T ss_pred             hccc------eeEeeccCCCCee
Confidence            9986      2335566988885

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.93  E-value=8.8e-25  Score=167.68  Aligned_cols=144  Identities=13%  Similarity=0.101  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC-----CCCCCHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK-----FQPAPLVVAKIIVNQILEG   79 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~-----~~~~~~~~~~~~~~qi~~~   79 (202)
                      +.+|+..++.+ +||  ||+++++++.    .....++||||+ +++|.+++....     ...+++..+..++.|++.|
T Consensus        46 ~~~e~~~l~~l-~h~--~i~~~~~~~~----~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~  118 (269)
T cd05044          46 FLKEAHLMSNF-NHP--NIVKLLGVCL----LNEPQYIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKG  118 (269)
T ss_pred             HHHHHHHHHhc-CCC--CeeeEeeeec----CCCCeEEEEeccCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHH
Confidence            45677777777 455  9999999988    456799999999 899999987532     2347889999999999999


Q ss_pred             HHHHHhhCCccccCCCCCceeeecCC---cceeEEeecccccccccccCC---CCCCCCccchhhHHHHhhhhccCCCCC
Q psy320           80 LNHLHTKHNLVHTSIKPESIFFKADH---VYIMTLINIQQATTHQECHDQ---QSSSKTKSKIFCEILEQCRLNQDFRLD  153 (202)
Q Consensus        80 l~~lh~~~~ivH~dl~p~nil~~~~~---~~~~~l~Dfg~a~~~~~~~~~---~~~~~~~~~~ape~~~~~~~~~~~~~~  153 (202)
                      +.|+|++ +++|+||+|+||+++.++   ...++++|||.+.........   .....+..|++||.+...      .++
T Consensus       119 l~~lH~~-~i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~------~~~  191 (269)
T cd05044         119 CVYLEQM-HFIHRDLAARNCLVSEKGYDADRVVKIGDFGLARDIYKSDYYRKEGEGLLPVRWMAPESLLDG------KFT  191 (269)
T ss_pred             HHHHHhC-CcccCCCChheEEEecCCCCCCcceEECCcccccccccccccccCcccCCCccccCHHHHccC------Ccc
Confidence            9999996 999999999999998765   113999999998765322111   122345689999998733      367


Q ss_pred             CCcchhhHHH
Q psy320          154 PRVDPTSIKM  163 (202)
Q Consensus       154 ~~~Diwsl~~  163 (202)
                      .++|+||+|+
T Consensus       192 ~~~Dv~slG~  201 (269)
T cd05044         192 TQSDVWSFGV  201 (269)
T ss_pred             cchhHHHHHH
Confidence            8999999985

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>KOG0603|consensus

Probab=99.93  E-value=1.4e-25  Score=182.07  Aligned_cols=155  Identities=16%  Similarity=0.213  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            7 TNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         7 ~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      .+|+.++.+..+||  ||+++.+.+.    ++.+.|+|||.+ ++-+.+.+.+..   .....+..|+.+|+.|+.|||+
T Consensus       363 ~~e~~~~~~~~~h~--niv~~~~v~~----~~~~~~~v~e~l~g~ell~ri~~~~---~~~~e~~~w~~~lv~Av~~LH~  433 (612)
T KOG0603|consen  363 QDEIPISLLVRDHP--NIVKSHDVYE----DGKEIYLVMELLDGGELLRRIRSKP---EFCSEASQWAAELVSAVDYLHE  433 (612)
T ss_pred             ccccchhhhhcCCC--cceeecceec----CCceeeeeehhccccHHHHHHHhcc---hhHHHHHHHHHHHHHHHHHHHh
Confidence            45677777777777  9999999999    788999999999 665555554432   3337888899999999999999


Q ss_pred             hCCccccCCCCCceeee-cCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHH
Q psy320           86 KHNLVHTSIKPESIFFK-ADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~-~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~  164 (202)
                      + |++||||||+|||+. ..+.  ++|+|||.++.....  ....+-|..|.|||++.      ...|+.++|+||+|..
T Consensus       434 ~-gvvhRDLkp~NIL~~~~~g~--lrltyFG~a~~~~~~--~~tp~~t~~y~APEvl~------~~~yt~acD~WSLGvl  502 (612)
T KOG0603|consen  434 Q-GVVHRDLKPGNILLDGSAGH--LRLTYFGFWSELERS--CDTPALTLQYVAPEVLA------IQEYTEACDWWSLGVL  502 (612)
T ss_pred             c-CeeecCCChhheeecCCCCc--EEEEEechhhhCchh--hcccchhhcccChhhhc------cCCCCcchhhHHHHHH
Confidence            6 999999999999994 6665  999999999887544  23446777899999999      3459999999999863


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCC
Q psy320          165 TTFCEILEQCRLNHQDFRPDPRV  187 (202)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~  187 (202)
                      .      ..|+.|..++...+..
T Consensus       503 L------y~ML~G~tp~~~~P~~  519 (612)
T KOG0603|consen  503 L------YEMLTGRTLFAAHPAG  519 (612)
T ss_pred             H------HHHHhCCCccccCCch
Confidence            3      3566677666654443

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.93  E-value=1.5e-24  Score=168.57  Aligned_cols=159  Identities=19%  Similarity=0.139  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      .+.+|+++++++ +||  ||+++++++.    .+...|+||||++++|.+.+.......+++..+..++.|++.||.|||
T Consensus        47 ~~~~e~~~l~~l-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH  119 (294)
T PLN00009         47 TAIREISLLKEM-QHG--NIVRLQDVVH----SEKRLYLVFEYLDLDLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCH  119 (294)
T ss_pred             HHHHHHHHHHhc-cCC--CEeeEEEEEe----cCCeEEEEEecccccHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHH
Confidence            456788888888 555  9999999998    567999999999878988887655444788999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      ++ |++|+||+|+||+++.++. .+|++|||.+....... ......++..|++||.+..     ...++.++|+||+|+
T Consensus       120 ~~-~i~H~dl~p~nill~~~~~-~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~-----~~~~~~~~Dv~slG~  192 (294)
T PLN00009        120 SH-RVLHRDLKPQNLLIDRRTN-ALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLG-----SRHYSTPVDIWSVGC  192 (294)
T ss_pred             hC-CeeCCCCCcceEEEECCCC-EEEEcccccccccCCCccccccCceeecccCHHHHhC-----CCCCCcHHHHHHHHH
Confidence            96 9999999999999986442 48999999997653221 1123356788999998862     233567899999986


Q ss_pred             HHHHHHHHHHHHhcCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~  183 (202)
                      .      +..+..|.++|..
T Consensus       193 i------~~~l~tg~~pf~~  206 (294)
T PLN00009        193 I------FAEMVNQKPLFPG  206 (294)
T ss_pred             H------HHHHHhCCCCCCC
Confidence            3      3355558777754

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.93  E-value=6.8e-25  Score=168.00  Aligned_cols=156  Identities=15%  Similarity=0.128  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+++++++ +||  ||+++++.+.     ....++||||+ +++|.+++.+.....+++..+..++.|++.||.|+
T Consensus        47 ~~~~E~~~l~~l-~~~--~i~~~~~~~~-----~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~l  118 (262)
T cd05071          47 AFLQEAQVMKKL-RHE--KLVQLYAVVS-----EEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYV  118 (262)
T ss_pred             HHHHHHHHHHhC-CCC--CcceEEEEEC-----CCCcEEEEEcCCCCcHHHHHhhccccCCCHHHHHHHHHHHHHHHHHH
Confidence            456788888888 455  9999998875     33578999999 88999999875545689999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC--CCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ--SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~--~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      |+. +++|+||+|+||+++.++.  ++|+|||.+..........  ...++..|++||....      ..++.++|+||+
T Consensus       119 H~~-~i~H~dl~p~Nill~~~~~--~~L~dfg~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~------~~~~~~~Dvwsl  189 (262)
T cd05071         119 ERM-NYVHRDLRAANILVGENLV--CKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALY------GRFTIKSDVWSF  189 (262)
T ss_pred             HHC-CccccccCcccEEEcCCCc--EEeccCCceeeccccccccccCCcccceecCHhHhcc------CCCCchhhHHHH
Confidence            996 9999999999999998776  9999999997654322111  2345567999998863      336789999999


Q ss_pred             HHHHHHHHHHHHHHh-cCCCCCC
Q psy320          162 KMYTTFCEILEQCRL-NHQDFRP  183 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~-~~~~~~~  183 (202)
                      |+..+      .+.. |.++|+.
T Consensus       190 G~~l~------ellt~g~~p~~~  206 (262)
T cd05071         190 GILLT------ELTTKGRVPYPG  206 (262)
T ss_pred             HHHHH------HHHcCCCCCCCC
Confidence            86322      3333 6666653

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>KOG2345|consensus

Probab=99.93  E-value=3.2e-25  Score=162.03  Aligned_cols=151  Identities=19%  Similarity=0.167  Sum_probs=119.6

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEe-cCCceEEEEEEccc-cccHHHHHHHcC--CCCCCHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVT-GINGTHVCTVTEIM-AECLCNYMIRQK--FQPAPLVVAKIIVNQILEG   79 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~-~~~~~~~~lv~e~~-~~sL~~~~~~~~--~~~~~~~~~~~~~~qi~~~   79 (202)
                      +.+++|++.-+++ ++|  ||++++++...+ ++.....|++++|. .|||.+.+.+..  +.-+++..+..++.++..|
T Consensus        63 e~~~rEid~~rkf-~s~--~vl~l~dh~l~~~~D~~~~~yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~g  139 (302)
T KOG2345|consen   63 EEALREIDNHRKF-NSP--NVLRLVDHQLREEKDGKHEAYLLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRG  139 (302)
T ss_pred             HHHHHHHHHHHhh-CCc--chHHHHHHHHHhhccCceeEEEEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHH
Confidence            3456788888888 455  999999997643 22456899999999 999999997655  2359999999999999999


Q ss_pred             HHHHHhhCC--ccccCCCCCceeeecCCcceeEEeecccccccccccCCC----------CCCCCccchhhHHHHhhhhc
Q psy320           80 LNHLHTKHN--LVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ----------SSSKTKSKIFCEILEQCRLN  147 (202)
Q Consensus        80 l~~lh~~~~--ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~----------~~~~~~~~~ape~~~~~~~~  147 (202)
                      |+++|+. .  +.||||||.|||++.++.  +++.|||.+....-.-...          ....|..|.|||++....  
T Consensus       140 L~~lH~~-~~~yAH~DiKP~NILls~~~~--~vl~D~GS~~~a~i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf~vk~--  214 (302)
T KOG2345|consen  140 LEALHEK-EPPYAHRDIKPANILLSDSGL--PVLMDLGSATQAPIQIEGSRQALRLQEWAEERCTIPYRAPELFNVKS--  214 (302)
T ss_pred             HHHHhcc-CCcccccCCCcceeEecCCCc--eEEEeccCccccceEeechHHHHHHHHHHHHhCCCcccCchheeccc--
Confidence            9999995 7  999999999999998766  9999999988653211111          126778999999998443  


Q ss_pred             cCCCCCCCcchhhHHH
Q psy320          148 QDFRLDPRVDPTSIKM  163 (202)
Q Consensus       148 ~~~~~~~~~Diwsl~~  163 (202)
                       ....+.++||||+|+
T Consensus       215 -~~ti~ertDIWSLGC  229 (302)
T KOG2345|consen  215 -HCTITERTDIWSLGC  229 (302)
T ss_pred             -CcccccccchhhhhH
Confidence             444577999999964

>KOG0671|consensus

Probab=99.93  E-value=8.7e-26  Score=173.58  Aligned_cols=148  Identities=24%  Similarity=0.361  Sum_probs=124.3

Q ss_pred             chHHHHHHHHHHHHhcC-C-C-ccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Q psy320            3 TNYATNLIKTLIEIQKH-P-S-DKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEG   79 (202)
Q Consensus         3 ~~~~~~e~~~l~~l~~~-~-h-~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~   79 (202)
                      +++++-|++.|+++..+ | . .-++.+.+||.    -..+.|+|+|.+|.|++++++.+...++|.+.++.++.|++.+
T Consensus       129 reAa~iEi~vLqki~~~DP~g~~rcv~m~~wFd----yrghiCivfellG~S~~dFlk~N~y~~fpi~~ir~m~~QL~~s  204 (415)
T KOG0671|consen  129 REAALIEIEVLQKINESDPNGKFRCVQMRDWFD----YRGHICIVFELLGLSTFDFLKENNYIPFPIDHIRHMGYQLLES  204 (415)
T ss_pred             hhHHHHHHHHHHHHHhcCCCCceEEEeeehhhh----ccCceEEEEeccChhHHHHhccCCccccchHHHHHHHHHHHHH
Confidence            56778899999999544 3 1 23889999999    4669999999999999999999888889999999999999999


Q ss_pred             HHHHHhhCCccccCCCCCceeeecCCc------------------ceeEEeecccccccccccCCCCCCCCccchhhHHH
Q psy320           80 LNHLHTKHNLVHTSIKPESIFFKADHV------------------YIMTLINIQQATTHQECHDQQSSSKTKSKIFCEIL  141 (202)
Q Consensus        80 l~~lh~~~~ivH~dl~p~nil~~~~~~------------------~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~  141 (202)
                      +++||+. +++|.||||+|||+.+...                  ..++++|||.|+.-....  .....|..|.|||++
T Consensus       205 v~fLh~~-kl~HTDLKPENILfvss~~~~~~~~k~~~~~~r~~ks~~I~vIDFGsAtf~~e~h--s~iVsTRHYRAPEVi  281 (415)
T KOG0671|consen  205 VAFLHDL-KLTHTDLKPENILFVSSEYFKTYNPKKKVCFIRPLKSTAIKVIDFGSATFDHEHH--STIVSTRHYRAPEVI  281 (415)
T ss_pred             HHHHHhc-ceeecCCChheEEEeccceEEEeccCCccceeccCCCcceEEEecCCcceeccCc--ceeeeccccCCchhe
Confidence            9999995 9999999999999976321                  238999999998864222  345788899999999


Q ss_pred             HhhhhccCCCCCCCcchhhHHH
Q psy320          142 EQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus       142 ~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      .+.+      .+.++|+||+|+
T Consensus       282 LgLG------wS~pCDvWSiGC  297 (415)
T KOG0671|consen  282 LGLG------WSQPCDVWSIGC  297 (415)
T ss_pred             eccC------cCCccCceeeee
Confidence            9555      788999999974

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.93  E-value=8.3e-25  Score=169.33  Aligned_cols=144  Identities=16%  Similarity=0.187  Sum_probs=116.5

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|++.++.+ +||  ||+++.+++...  .+...++||||+ +++|.+++.+.. ..+++..+..++.|++.||.|+
T Consensus        52 ~~~~e~~~l~~l-~h~--~i~~~~~~~~~~--~~~~~~lv~e~~~g~~L~~~l~~~~-~~~~~~~~~~i~~~i~~aL~~l  125 (284)
T cd05079          52 DLKKEIEILRNL-YHE--NIVKYKGICTED--GGNGIKLIMEFLPSGSLKEYLPRNK-NKINLKQQLKYAVQICKGMDYL  125 (284)
T ss_pred             HHHHHHHHHHhC-CCC--CeeeeeeEEecC--CCCceEEEEEccCCCCHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHH
Confidence            456788888888 555  999999998742  145789999999 999999986643 3489999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC----CCCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD----QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~----~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      |++ |++|+||||+||+++.++.  ++|+|||.+........    .....++..|+|||.+..      ..++.++|+|
T Consensus       126 H~~-gi~H~dlkp~Nil~~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~------~~~~~~~Di~  196 (284)
T cd05079         126 GSR-QYVHRDLAARNVLVESEHQ--VKIGDFGLTKAIETDKEYYTVKDDLDSPVFWYAPECLIQ------SKFYIASDVW  196 (284)
T ss_pred             HHC-CeeecccchheEEEcCCCC--EEECCCccccccccCccceeecCCCCCCccccCHHHhcc------CCCCccccch
Confidence            996 9999999999999988776  99999999987643221    112345667999998863      3367799999


Q ss_pred             hHHH
Q psy320          160 SIKM  163 (202)
Q Consensus       160 sl~~  163 (202)
                      |+|+
T Consensus       197 slG~  200 (284)
T cd05079         197 SFGV  200 (284)
T ss_pred             hhhh
Confidence            9985

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.93  E-value=9.8e-25  Score=166.77  Aligned_cols=143  Identities=15%  Similarity=0.142  Sum_probs=115.6

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ..+.+|+.+++++ +|+  ||+++++++.     ....+++|||+ +++|.+++.....+.+++..++.++.|++.||.|
T Consensus        46 ~~~~~E~~~l~~l-~~~--~i~~~~~~~~-----~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~  117 (260)
T cd05070          46 ESFLEEAQIMKKL-RHD--KLVQLYAVVS-----EEPIYIVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAY  117 (260)
T ss_pred             HHHHHHHHHHHhc-CCC--ceEEEEeEEC-----CCCcEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence            3456888888888 565  9999998875     33578999999 8999999977555568999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC--CCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ--SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~--~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      ||+. +++|+||+|+||+++.++.  ++|+|||.+..........  ...++..|+|||....      ..++.++|+||
T Consensus       118 lH~~-~i~H~di~p~Nili~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~Di~s  188 (260)
T cd05070         118 IERM-NYIHRDLRSANILVGDGLV--CKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALY------GRFTIKSDVWS  188 (260)
T ss_pred             HHHC-CcccCCCccceEEEeCCce--EEeCCceeeeeccCcccccccCCCCCccccChHHHhc------CCCcchhhhHH
Confidence            9996 9999999999999998766  9999999998754322111  2234557999998863      33677999999


Q ss_pred             HHH
Q psy320          161 IKM  163 (202)
Q Consensus       161 l~~  163 (202)
                      +|+
T Consensus       189 lG~  191 (260)
T cd05070         189 FGI  191 (260)
T ss_pred             HHH
Confidence            986

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.93  E-value=1.1e-24  Score=167.48  Aligned_cols=139  Identities=16%  Similarity=0.192  Sum_probs=115.6

Q ss_pred             CccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCce
Q psy320           21 SDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESI   99 (202)
Q Consensus        21 h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~ni   99 (202)
                      |+||+++++.|.    .....|+||||+ +++|.+++....  .+++..+..++.|++.|+.++|+. |++|+||+|+||
T Consensus        68 h~~iv~~~~~~~----~~~~~~iv~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~~l~~lH~~-~i~H~dl~p~ni  140 (267)
T PHA03390         68 NPNFIKLYYSVT----TLKGHVLIMDYIKDGDLFDLLKKEG--KLSEAEVKKIIRQLVEALNDLHKH-NIIHNDIKLENV  140 (267)
T ss_pred             CCCEEEEEEEEe----cCCeeEEEEEcCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhC-CeeeCCCCHHHE
Confidence            449999999998    466999999999 899999997753  599999999999999999999996 999999999999


Q ss_pred             eeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHhcCC
Q psy320          100 FFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLNHQ  179 (202)
Q Consensus       100 l~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~~~~  179 (202)
                      +++.++. .++++|||.+.....   .....++..|+|||.+...      .++.++|+||+|+.      +..+..|..
T Consensus       141 l~~~~~~-~~~l~dfg~~~~~~~---~~~~~~~~~y~aPE~~~~~------~~~~~~DvwslG~i------l~~l~~g~~  204 (267)
T PHA03390        141 LYDRAKD-RIYLCDYGLCKIIGT---PSCYDGTLDYFSPEKIKGH------NYDVSFDWWAVGVL------TYELLTGKH  204 (267)
T ss_pred             EEeCCCC-eEEEecCccceecCC---CccCCCCCcccChhhhcCC------CCCchhhHHHHHHH------HHHHHHCCC
Confidence            9998772 399999999876532   2234578899999999743      36779999999873      335566877


Q ss_pred             CCC
Q psy320          180 DFR  182 (202)
Q Consensus       180 ~~~  182 (202)
                      +|.
T Consensus       205 p~~  207 (267)
T PHA03390        205 PFK  207 (267)
T ss_pred             CCC
Confidence            776

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.93  E-value=6.8e-25  Score=168.12  Aligned_cols=153  Identities=17%  Similarity=0.223  Sum_probs=122.2

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+.+++++ +||  ||+++++++.    .....++|+||+ +++|.+++...  +.+++..+..++.|++.||.|||
T Consensus        53 ~~~e~~~l~~l-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~~l~~~l~~lH  123 (267)
T cd06628          53 LAREIALLKEL-QHE--NIVQYLGSSL----DADHLNIFLEYVPGGSVAALLNNY--GAFEETLVRNFVRQILKGLNYLH  123 (267)
T ss_pred             HHHHHHHHHhc-CCC--CeeeEEEEEE----eCCccEEEEEecCCCCHHHHHHhc--cCccHHHHHHHHHHHHHHHHHHH
Confidence            45678888888 455  9999999998    466899999999 88999999775  34899999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccC-------CCCCCCCccchhhHHHHhhhhccCCCCCCCcc
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD-------QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVD  157 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~-------~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~D  157 (202)
                      +. |++|+||+|+||+++.++.  ++|+|||.++.......       .....++..|++||.+...      .++.++|
T Consensus       124 ~~-~ivH~di~p~nil~~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~------~~~~~~D  194 (267)
T cd06628         124 NR-GIIHRDIKGANILVDNKGG--IKISDFGISKKLEANSLSTKTNGARPSLQGSVFWMAPEVVKQT------SYTRKAD  194 (267)
T ss_pred             hc-CcccccCCHHHEEEcCCCC--EEecccCCCcccccccccCCccccccccCCCcCccChhHhccC------CCCchhh
Confidence            95 9999999999999987776  99999999887652111       1123577889999998733      3677899


Q ss_pred             hhhHHHHHHHHHHHHHHHhcCCCCC
Q psy320          158 PTSIKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       158 iwsl~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +||+|+..+      .+..|..+|.
T Consensus       195 v~slG~il~------~l~~g~~p~~  213 (267)
T cd06628         195 IWSLGCLVV------EMLTGKHPFP  213 (267)
T ss_pred             hHHHHHHHH------HHhhCCCCCC
Confidence            999986322      4445766664

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.93  E-value=6.6e-25  Score=169.03  Aligned_cols=142  Identities=17%  Similarity=0.176  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCC--------CCCCHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKF--------QPAPLVVAKIIVNQI   76 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~--------~~~~~~~~~~~~~qi   76 (202)
                      +.+|+..++.+ +||  ||+++++++.    .....++||||+ +++|.+++.....        ..+++..+..++.|+
T Consensus        56 ~~~e~~~l~~~-~~~--~i~~~~~~~~----~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i  128 (277)
T cd05032          56 FLNEASVMKEF-NCH--HVVRLLGVVS----TGQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEI  128 (277)
T ss_pred             HHHHHHHHHhC-CCC--ceeEEEEEEc----CCCCcEEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHH
Confidence            44677777776 455  9999999998    567899999999 8999999875321        236788999999999


Q ss_pred             HHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC---CCCCCCCccchhhHHHHhhhhccCCCCC
Q psy320           77 LEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD---QQSSSKTKSKIFCEILEQCRLNQDFRLD  153 (202)
Q Consensus        77 ~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~ape~~~~~~~~~~~~~~  153 (202)
                      +.||.|||+. +++|+||+|+||+++.++.  ++|+|||.++.......   .....++..|+|||.+..      ..++
T Consensus       129 ~~~l~~lH~~-~i~H~di~p~nill~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~  199 (277)
T cd05032         129 ADGMAYLAAK-KFVHRDLAARNCMVAEDLT--VKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKD------GVFT  199 (277)
T ss_pred             HHHHHHHHhC-CccccccChheEEEcCCCC--EEECCcccchhhccCcccccCCCCCccccccCHHHHhc------CCCC
Confidence            9999999996 9999999999999998877  99999999886543221   112345678999999863      3367


Q ss_pred             CCcchhhHHH
Q psy320          154 PRVDPTSIKM  163 (202)
Q Consensus       154 ~~~Diwsl~~  163 (202)
                      .++|+||+|+
T Consensus       200 ~~~Di~slG~  209 (277)
T cd05032         200 TKSDVWSFGV  209 (277)
T ss_pred             cccchHHHHH
Confidence            7999999986

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.93  E-value=1.4e-24  Score=165.20  Aligned_cols=155  Identities=16%  Similarity=0.204  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|++.++++ +|+  ||+++++.+.    .....|+++||+ +++|.+++.... ..+++..++.++.|++.|+.||
T Consensus        44 ~~~~e~~~~~~l-~~~--~i~~~~~~~~----~~~~~~l~~e~~~~~~L~~~l~~~~-~~l~~~~~~~~~~~l~~~l~~l  115 (256)
T cd06612          44 EIIKEISILKQC-DSP--YIVKYYGSYF----KNTDLWIVMEYCGAGSVSDIMKITN-KTLTEEEIAAILYQTLKGLEYL  115 (256)
T ss_pred             HHHHHHHHHHhC-CCC--cEeeeeeeee----cCCcEEEEEecCCCCcHHHHHHhCc-cCCCHHHHHHHHHHHHHHHHHH
Confidence            456788888888 555  9999999998    467999999999 899999986543 4589999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |+. +++|+||+|+||+++.++.  ++|+|||.+....... ......++..|++||.+..      ..++.++|+||+|
T Consensus       116 h~~-~i~H~dl~~~ni~~~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~------~~~~~~~Di~s~G  186 (256)
T cd06612         116 HSN-KKIHRDIKAGNILLNEEGQ--AKLADFGVSGQLTDTMAKRNTVIGTPFWMAPEVIQE------IGYNNKADIWSLG  186 (256)
T ss_pred             HHC-CcccCCCCcceEEECCCCc--EEEcccccchhcccCccccccccCCccccCHHHHhc------CCCCchhhHHHHH
Confidence            995 9999999999999998776  9999999988765432 2223457788999999873      3477899999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +.      +-.+..|.+++.
T Consensus       187 ~i------l~~l~~g~~p~~  200 (256)
T cd06612         187 IT------AIEMAEGKPPYS  200 (256)
T ss_pred             HH------HHHHHhCCCCCC
Confidence            63      334555777664

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=7.3e-25  Score=167.31  Aligned_cols=158  Identities=16%  Similarity=0.183  Sum_probs=124.6

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++++ +||  ||+++++.+.    .+...|++|||+ +++|.+++.... ..+++..+..++.|++.|+.||
T Consensus        46 ~~~~e~~~l~~~-~h~--~i~~~~~~~~----~~~~~~l~~e~~~~~~l~~~~~~~~-~~l~~~~~~~~~~ql~~~l~~l  117 (262)
T cd06613          46 IIQQEISMLKEC-RHP--NIVAYFGSYL----RRDKLWIVMEYCGGGSLQDIYQVTR-GPLSELQIAYVCRETLKGLAYL  117 (262)
T ss_pred             HHHHHHHHHHhC-CCC--ChhceEEEEE----eCCEEEEEEeCCCCCcHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHH
Confidence            456678888877 455  9999999998    466899999999 889999887652 3599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |+. |++|+||+|+||+++.++.  ++++|||.+....... ......++..|++||.+....   ...++.++|+||+|
T Consensus       118 h~~-~i~h~dl~p~ni~i~~~~~--~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~---~~~~~~~~Di~slG  191 (262)
T cd06613         118 HET-GKIHRDIKGANILLTEDGD--VKLADFGVSAQLTATIAKRKSFIGTPYWMAPEVAAVER---KGGYDGKCDIWALG  191 (262)
T ss_pred             HhC-CceecCCChhhEEECCCCC--EEECccccchhhhhhhhccccccCCccccCchhhcccc---cCCcCchhhhHHHH
Confidence            995 9999999999999998876  9999999988765432 222346778899999987431   12467789999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +..+      .+..|.+++.
T Consensus       192 ~~l~------~~~tg~~p~~  205 (262)
T cd06613         192 ITAI------ELAELQPPMF  205 (262)
T ss_pred             HHHH------HHHhCCCCCC
Confidence            6332      4445666653

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.93  E-value=8.5e-25  Score=169.15  Aligned_cols=144  Identities=14%  Similarity=0.164  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+++++.+ +||  ||+++.+++...  +....++|+||+ +++|.+++.... ..+++..++.++.|++.||.||
T Consensus        51 ~~~~e~~~l~~l-~h~--~iv~~~~~~~~~--~~~~~~lv~e~~~~~~L~~~l~~~~-~~l~~~~~~~~~~~l~~aL~~L  124 (284)
T cd05081          51 DFEREIEILKSL-QHD--NIVKYKGVCYSA--GRRNLRLVMEYLPYGSLRDYLQKHR-ERLDHRKLLLYASQICKGMEYL  124 (284)
T ss_pred             HHHHHHHHHHhC-CCC--CeeEEEEEEccC--CCCceEEEEEecCCCCHHHHHHhcC-cCCCHHHHHHHHHHHHHHHHHH
Confidence            346788888888 455  999999987632  245789999999 999999987543 3589999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC----CCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ----QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~----~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      |++ |++|+||||+||+++.++.  ++|+|||.+.........    ....+...|++||.+..      ..++.++|+|
T Consensus       125 H~~-~i~H~dlkp~nili~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~Di~  195 (284)
T cd05081         125 GSK-RYVHRDLATRNILVESENR--VKIGDFGLTKVLPQDKEYYKVREPGESPIFWYAPESLTE------SKFSVASDVW  195 (284)
T ss_pred             HHC-CceeccCCHhhEEECCCCe--EEECCCcccccccCCCcceeecCCCCCceEeeCHHHhcc------CCcChHHHHH
Confidence            996 9999999999999988776  999999999876432211    11223445899998863      3367799999


Q ss_pred             hHHH
Q psy320          160 SIKM  163 (202)
Q Consensus       160 sl~~  163 (202)
                      |+|+
T Consensus       196 slG~  199 (284)
T cd05081         196 SFGV  199 (284)
T ss_pred             HHHH
Confidence            9985

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.93  E-value=1.3e-24  Score=167.64  Aligned_cols=157  Identities=20%  Similarity=0.246  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q psy320            7 TNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTK   86 (202)
Q Consensus         7 ~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~   86 (202)
                      .+|+..+.++.+|+  ||+++++++...  .....++|+||+.++|.+.+.... +.+++..++.++.|++.||.|||+.
T Consensus        45 ~~e~~~l~~l~~h~--~i~~~~~~~~~~--~~~~~~lv~e~~~~~l~~~l~~~~-~~~~~~~~~~~~~qi~~~L~~LH~~  119 (282)
T cd07831          45 LREIQALRRLSPHP--NILRLIEVLFDR--KTGRLALVFELMDMNLYELIKGRK-RPLPEKRVKSYMYQLLKSLDHMHRN  119 (282)
T ss_pred             HHHHHHHhhcCCCC--CccceEEEEecC--CCCcEEEEEecCCccHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHC
Confidence            35777777775566  999999998842  125889999999778888876543 4589999999999999999999996


Q ss_pred             CCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHHH
Q psy320           87 HNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTT  166 (202)
Q Consensus        87 ~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~~  166 (202)
                       |++|+||+|+||+++. +.  ++|+|||.+.............++..|++||.+...     ..++.++|+||+|+..+
T Consensus       120 -~i~H~dl~p~ni~l~~-~~--~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-----~~~~~~~Di~slGv~l~  190 (282)
T cd07831         120 -GIFHRDIKPENILIKD-DI--LKLADFGSCRGIYSKPPYTEYISTRWYRAPECLLTD-----GYYGPKMDIWAVGCVFF  190 (282)
T ss_pred             -CceecccCHHHEEEcC-CC--eEEEecccccccccCCCcCCCCCCcccCChhHhhcC-----CCCCcchhHHHHHHHHH
Confidence             9999999999999998 55  999999999876433332334578899999987522     22466899999986322


Q ss_pred             HHHHHHHHHhcCCCCCC
Q psy320          167 FCEILEQCRLNHQDFRP  183 (202)
Q Consensus       167 ~~~~~~~~~~~~~~~~~  183 (202)
                            .+..|.++|+.
T Consensus       191 ------el~~~~~p~~~  201 (282)
T cd07831         191 ------EILSLFPLFPG  201 (282)
T ss_pred             ------HHHcCCcCCCC
Confidence                  44446666653

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.93  E-value=7e-25  Score=167.14  Aligned_cols=155  Identities=25%  Similarity=0.345  Sum_probs=124.5

Q ss_pred             HHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            7 TNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         7 ~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      .+|+..++++ +||  ||+++++++..    ....++|||++ +++|.+++...  +.+++..+..++.|++.||.+||+
T Consensus        46 ~~e~~~~~~l-~~~--~i~~~~~~~~~----~~~~~~v~~~~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~~L~~Lh~  116 (260)
T PF00069_consen   46 IREIKILRRL-RHP--NIVQILDVFQD----DNYLYIVMEYCPGGSLQDYLQKN--KPLSEEEILKIAYQILEALAYLHS  116 (260)
T ss_dssp             HHHHHHHHHH-TBT--TBCHEEEEEEE----SSEEEEEEEEETTEBHHHHHHHH--SSBBHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhccccc-ccc--ccccccccccc----ccccccccccccccccccccccc--cccccccccccccccccccccccc
Confidence            3478888888 555  99999999994    66899999999 67999999854  349999999999999999999999


Q ss_pred             hCCccccCCCCCceeeecCCcceeEEeecccccccc-cccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHH
Q psy320           86 KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQ-ECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~-~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~  164 (202)
                      . |++|+||||+||+++.++.  ++|+|||.+.... .........++..|.|||...     ....++.++|+||+|+.
T Consensus       117 ~-~i~H~dikp~NIl~~~~~~--~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~-----~~~~~~~~~Di~slG~i  188 (260)
T PF00069_consen  117 K-GIVHRDIKPENILLDENGE--VKLIDFGSSVKLSENNENFNPFVGTPEYMAPEVLQ-----QGKKYTRKSDIWSLGII  188 (260)
T ss_dssp             T-TEEESSBSGGGEEESTTSE--EEESSGTTTEESTSTTSEBSSSSSSGGGSCHHHHT-----TTSSBSTHHHHHHHHHH
T ss_pred             c-ccccccccccccccccccc--ccccccccccccccccccccccccccccccccccc-----ccccccccccccccccc
Confidence            6 9999999999999997776  9999999998642 223333567888999999987     12336779999999873


Q ss_pred             HHHHHHHHHHHhcCCCCCCC
Q psy320          165 TTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~  184 (202)
                      .      -.+..|..++...
T Consensus       189 l------~~l~~~~~p~~~~  202 (260)
T PF00069_consen  189 L------YELLTGKLPFEES  202 (260)
T ss_dssp             H------HHHHHSSSSSTTS
T ss_pred             c------ccccccccccccc
Confidence            2      2444466666543

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.93  E-value=8.3e-25  Score=169.04  Aligned_cols=129  Identities=16%  Similarity=0.165  Sum_probs=105.2

Q ss_pred             CCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCc
Q psy320           20 PSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPES   98 (202)
Q Consensus        20 ~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~n   98 (202)
                      .||||+++++++.     +...++++||+ +++|.+++.... +.+++..+..++.|++.||.|+|++ +++|+||||+|
T Consensus        67 ~h~~iv~~~~~~~-----~~~~~~i~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~lH~~-~iiH~dlkp~n  139 (279)
T cd05111          67 DHAYIVRLLGICP-----GASLQLVTQLSPLGSLLDHVRQHR-DSLDPQRLLNWCVQIAKGMYYLEEH-RMVHRNLAARN  139 (279)
T ss_pred             CCCCcceEEEEEC-----CCccEEEEEeCCCCcHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHHC-CEeccccCcce
Confidence            3569999999875     33577899999 899999997654 4589999999999999999999996 99999999999


Q ss_pred             eeeecCCcceeEEeecccccccccccCC---CCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           99 IFFKADHVYIMTLINIQQATTHQECHDQ---QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        99 il~~~~~~~~~~l~Dfg~a~~~~~~~~~---~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |+++.++.  ++|+|||.++........   ....++..|++||.+...      .++.++|+||+|+
T Consensus       140 ili~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~------~~~~~~Dv~slG~  199 (279)
T cd05111         140 ILLKSDSI--VQIADFGVADLLYPDDKKYFYSEHKTPIKWMALESILFG------RYTHQSDVWSYGV  199 (279)
T ss_pred             EEEcCCCc--EEEcCCccceeccCCCcccccCCCCCcccccCHHHhccC------CcCchhhHHHHHH
Confidence            99988766  999999999865432211   123456689999998743      3778999999985

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.93  E-value=1.3e-24  Score=165.88  Aligned_cols=139  Identities=15%  Similarity=0.234  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|++.++.+ +|+  ||+++++++.     +...++||||+ +++|.+++....  .+++..+..++.|++.|+.|||
T Consensus        43 ~~~e~~~l~~l-~h~--~iv~~~~~~~-----~~~~~~v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lh  112 (257)
T cd05060          43 FLREASVMAQL-DHP--CIVRLIGVCK-----GEPLMLVMELAPLGPLLKYLKKRR--EIPVSDLKELAHQVAMGMAYLE  112 (257)
T ss_pred             HHHHHHHHHhc-CCC--CeeeEEEEEc-----CCceEEEEEeCCCCcHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHh
Confidence            45677777777 555  9999999875     34679999999 889999997764  5899999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC----CCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ----SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~----~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      .. +++|+||||+||+++.++.  ++|+|||.++.........    ...++..|++||.+..      ..++.++|+||
T Consensus       113 ~~-~i~H~di~p~nili~~~~~--~kl~df~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~Di~s  183 (257)
T cd05060         113 SK-HFVHRDLAARNVLLVNRHQ--AKISDFGMSRALGAGSDYYRATTAGRWPLKWYAPECINY------GKFSSKSDVWS  183 (257)
T ss_pred             hc-CeeccCcccceEEEcCCCc--EEeccccccceeecCCcccccccCccccccccCHHHhcC------CCCCccchHHH
Confidence            95 9999999999999988776  9999999998764332211    1123457999998873      33778999999


Q ss_pred             HHH
Q psy320          161 IKM  163 (202)
Q Consensus       161 l~~  163 (202)
                      +|+
T Consensus       184 lG~  186 (257)
T cd05060         184 YGV  186 (257)
T ss_pred             HHH
Confidence            985

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.93  E-value=1.2e-24  Score=169.64  Aligned_cols=154  Identities=18%  Similarity=0.245  Sum_probs=123.9

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+..++.+ +|+  ||+++++.|.    .+...|+||||+ +++|.+++.+.   .+++..+..++.|++.||.||
T Consensus        62 ~~~~e~~~l~~~-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~~l~~~L~~L  131 (297)
T cd06656          62 LIINEILVMREN-KNP--NIVNYLDSYL----VGDELWVVMEYLAGGSLTDVVTET---CMDEGQIAAVCRECLQALDFL  131 (297)
T ss_pred             HHHHHHHHHHhC-CCC--CEeeEEEEEe----cCCEEEEeecccCCCCHHHHHHhC---CCCHHHHHHHHHHHHHHHHHH
Confidence            345677777776 555  9999999998    566999999999 99999998653   389999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC-CCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ-QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~-~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |+. |++|+||+|+||+++.++.  ++++|||.+......... ....+++.|++||.+..      ..++.++|+||+|
T Consensus       132 H~~-~i~H~dL~p~Nili~~~~~--~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~Di~slG  202 (297)
T cd06656         132 HSN-QVIHRDIKSDNILLGMDGS--VKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTR------KAYGPKVDIWSLG  202 (297)
T ss_pred             HHC-CcccCCCCHHHEEECCCCC--EEECcCccceEccCCccCcCcccCCccccCHHHHcC------CCCCcHHHHHHHH
Confidence            995 9999999999999988776  999999998765433222 23467889999999873      3367799999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +.      +..+..|.++|..
T Consensus       203 vi------l~~l~tg~~pf~~  217 (297)
T cd06656         203 IM------AIEMVEGEPPYLN  217 (297)
T ss_pred             HH------HHHHHhCCCCCCC
Confidence            63      2355558777754

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.93  E-value=1.4e-24  Score=165.52  Aligned_cols=142  Identities=13%  Similarity=0.131  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|++.++++ +||  ||+++++.+.    . ...++|+||+ +++|.+.+.....+.+++..+..++.|++.||.||
T Consensus        42 ~~~~e~~~l~~l-~h~--~iv~~~~~~~----~-~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~l  113 (257)
T cd05040          42 DFLKEAAIMHSL-DHE--NLIRLYGVVL----T-HPLMMVTELAPLGSLLDRLRKDALGHFLISTLCDYAVQIANGMRYL  113 (257)
T ss_pred             HHHHHHHHHhhc-CCC--CccceeEEEc----C-CeEEEEEEecCCCcHHHHHHhcccccCcHHHHHHHHHHHHHHHHHH
Confidence            345677777777 454  9999999988    4 6899999999 89999999776434589999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC----CCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ----QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~----~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      |++ |++|+||+|+||+++.++.  ++|+|||.+.........    ....++..|++||.+..      ..++.++|+|
T Consensus       114 H~~-~i~H~di~p~nil~~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~------~~~~~~~Di~  184 (257)
T cd05040         114 ESK-RFIHRDLAARNILLASDDK--VKIGDFGLMRALPQNEDHYVMEEHLKVPFAWCAPESLRT------RTFSHASDVW  184 (257)
T ss_pred             HhC-CccccccCcccEEEecCCE--EEeccccccccccccccceecccCCCCCceecCHHHhcc------cCcCchhhhH
Confidence            996 9999999999999998876  999999999876542211    12345678999998873      3377799999


Q ss_pred             hHHH
Q psy320          160 SIKM  163 (202)
Q Consensus       160 sl~~  163 (202)
                      |+|+
T Consensus       185 slG~  188 (257)
T cd05040         185 MFGV  188 (257)
T ss_pred             HHHH
Confidence            9985

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.93  E-value=1.4e-24  Score=167.84  Aligned_cols=163  Identities=20%  Similarity=0.204  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecC-CceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGI-NGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~-~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+.+++++++..|+||+++.+++..... .....+++|||+.++|.+++.+.....+++..++.++.|++.||.||
T Consensus        44 ~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~~~l~~e~~~~~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~L  123 (287)
T cd07838          44 STLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELKLTLVFEHVDQDLATYLSKCPKPGLPPETIKDLMRQLLRGVDFL  123 (287)
T ss_pred             hHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCceeEEEehhcccCHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence            34568888888865456699999999985321 22359999999977999988775544699999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |+. +++|+||+|+||+++.++.  ++|+|||.+.............++..|++||.+...      .++.++|+||+|+
T Consensus       124 H~~-~i~h~~l~~~nili~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~~~PE~~~~~------~~~~~~Di~s~G~  194 (287)
T cd07838         124 HSH-RIVHRDLKPQNILVTSDGQ--VKIADFGLARIYSFEMALTSVVVTLWYRAPEVLLQS------SYATPVDMWSVGC  194 (287)
T ss_pred             HHC-CeeeccCChhhEEEccCCC--EEEeccCcceeccCCcccccccccccccChHHhccC------CCCCcchhhhHHH
Confidence            996 9999999999999998876  999999999876544333344577889999998733      3677999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~  182 (202)
                      ..+      .+..|.++|.
T Consensus       195 ~l~------~l~~~~~~~~  207 (287)
T cd07838         195 IFA------ELFRRRPLFR  207 (287)
T ss_pred             HHH------HHHhCCCccc
Confidence            322      3444666554

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.93  E-value=1.4e-24  Score=167.80  Aligned_cols=155  Identities=23%  Similarity=0.273  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+++++.+ +|+  ||++++++|.    .+...++||||+ +++|..+....  +.+++..++.++.|++.||.||
T Consensus        46 ~~~~e~~~l~~~-~h~--~i~~~~~~~~----~~~~~~~v~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~ql~~~l~~L  116 (286)
T cd07847          46 IALREIRMLKQL-KHP--NLVNLIEVFR----RKRKLHLVFEYCDHTVLNELEKNP--RGVPEHLIKKIIWQTLQAVNFC  116 (286)
T ss_pred             HHHHHHHHHHhC-CCC--CEeeeeeEEe----eCCEEEEEEeccCccHHHHHHhCC--CCCCHHHHHHHHHHHHHHHHHH
Confidence            356788888888 455  9999999998    466899999999 66666665443  3499999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC-CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD-QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~-~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |+. |++|+||+|+||+++.++.  ++|+|||.+........ .....++..|++||.+..     ...++.++|+||+|
T Consensus       117 H~~-~i~H~dl~p~nil~~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-----~~~~~~~~Di~slG  188 (286)
T cd07847         117 HKH-NCIHRDVKPENILITKQGQ--IKLCDFGFARILTGPGDDYTDYVATRWYRAPELLVG-----DTQYGPPVDVWAIG  188 (286)
T ss_pred             HHC-CceecCCChhhEEEcCCCc--EEECccccceecCCCcccccCcccccccCCHHHHhC-----CCCcCchhhhHHHH
Confidence            995 9999999999999998776  99999999987654332 223456788999999862     23356789999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +.      +..+..|.++|.
T Consensus       189 ~i------~~~l~~g~~p~~  202 (286)
T cd07847         189 CV------FAELLTGQPLWP  202 (286)
T ss_pred             HH------HHHHHhCCCCCC
Confidence            63      224444666664

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>KOG0587|consensus

Probab=99.93  E-value=2.7e-25  Score=185.56  Aligned_cols=163  Identities=17%  Similarity=0.215  Sum_probs=134.6

Q ss_pred             HHHHHHHHHHhcCCCccceeeeeeeEEec-CCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            7 TNLIKTLIEIQKHPSDKLMKLLDHFQVTG-INGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         7 ~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~-~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      .-|+.+|+..+.||  |++.++++|.-.. ..++.+||||||| +||..++.+...++++.++.+.-+++.++.|+.+||
T Consensus        63 E~eynil~~~~~hp--nv~~fyg~~~k~~~~~~DqLWLVMEfC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl~HLH  140 (953)
T KOG0587|consen   63 ELEYNMLKKYSHHP--NVATFYGAFIKKDPGNGDQLWLVMEFCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGLAHLH  140 (953)
T ss_pred             HHHHHHHHhccCCC--CcceEEEEEEEecCCCCCeEEEEeeccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHh
Confidence            34566677775555  9999999987432 2578999999999 999999999877788999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      .. .++|||+|=.|||++.++.  |||+|||.+...+..- ......||+.|+|||++..++ .+...|+.++|+||||+
T Consensus       141 ~n-kviHRDikG~NiLLT~e~~--VKLvDFGvSaQldsT~grRnT~iGtP~WMAPEViac~e-~~d~tyd~R~D~WsLGI  216 (953)
T KOG0587|consen  141 NN-KVIHRDIKGQNVLLTENAE--VKLVDFGVSAQLDSTVGRRNTFIGTPYWMAPEVIACDE-SPDATYDYRSDLWSLGI  216 (953)
T ss_pred             hc-ceeeecccCceEEEeccCc--EEEeeeeeeeeeecccccccCcCCCcccccceeeeccc-CCCCCcccccchhhccc
Confidence            96 9999999999999999887  9999999998876532 233568999999999998554 34556778999999997


Q ss_pred             HHHHHHHHHHHHhcCCCC
Q psy320          164 YTTFCEILEQCRLNHQDF  181 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~  181 (202)
                      -++      .+..|+|++
T Consensus       217 TaI------EladG~PPl  228 (953)
T KOG0587|consen  217 TAI------EMAEGAPPL  228 (953)
T ss_pred             eee------hhcCCCCCc
Confidence            444      666677765

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.93  E-value=1e-24  Score=169.80  Aligned_cols=142  Identities=25%  Similarity=0.274  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      ..+|++.++++ +|+  ||+++++++.    +....++||||++++|.+++.... ..+++..++.++.|++.||.|||+
T Consensus        49 ~~~e~~~l~~~-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~L~~~i~~~~-~~~~~~~~~~~~~qi~~al~~lH~  120 (298)
T cd07841          49 ALREIKLLQEL-KHP--NIIGLLDVFG----HKSNINLVFEFMETDLEKVIKDKS-IVLTPADIKSYMLMTLRGLEYLHS  120 (298)
T ss_pred             HHHHHHHHhhc-CCC--CChhhhheee----cCCEEEEEEcccCCCHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHHh
Confidence            45678888888 455  9999999998    467999999999999999987654 359999999999999999999999


Q ss_pred             hCCccccCCCCCceeeecCCcceeEEeecccccccccccCC-CCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           86 KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ-QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~-~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      . |++|+||+|+||+++.++.  ++|+|||.+......... ....++..|.+||.+..     ...++.++|+||+|+
T Consensus       121 ~-~i~H~dl~p~nill~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-----~~~~~~~~Dv~slG~  191 (298)
T cd07841         121 N-WILHRDLKPNNLLIASDGV--LKLADFGLARSFGSPNRKMTHQVVTRWYRAPELLFG-----ARHYGVGVDMWSVGC  191 (298)
T ss_pred             C-CeeecCCChhhEEEcCCCC--EEEccceeeeeccCCCccccccccceeeeCHHHHhC-----CCCCCcHHHHHHHHH
Confidence            6 9999999999999998876  999999999876543222 22356778999998852     233577899999986

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.93  E-value=1.5e-24  Score=168.66  Aligned_cols=143  Identities=13%  Similarity=0.186  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC---------CCCCCHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK---------FQPAPLVVAKIIVN   74 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~---------~~~~~~~~~~~~~~   74 (202)
                      ...+|+++++++ +||  ||+++++++.    .....++++|++ +++|.+++....         ...+++..++.++.
T Consensus        65 ~~~~e~~~l~~l-~~~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (296)
T cd05051          65 DFLKEVKILSRL-SDP--NIARLLGVCT----VDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMAT  137 (296)
T ss_pred             HHHHHHHHHHhc-CCC--CEeEEEEEEe----cCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHH
Confidence            345688888888 455  9999999998    456899999999 899999987654         12589999999999


Q ss_pred             HHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC---CCCCCCccchhhHHHHhhhhccCCC
Q psy320           75 QILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ---QSSSKTKSKIFCEILEQCRLNQDFR  151 (202)
Q Consensus        75 qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~---~~~~~~~~~~ape~~~~~~~~~~~~  151 (202)
                      |++.||.|||+. |++|+||||+||+++.++.  ++++|||.++........   ....++..|++||.+...      .
T Consensus       138 ~i~~al~~LH~~-~i~H~dlkp~Nili~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~------~  208 (296)
T cd05051         138 QIASGMRYLESL-NFVHRDLATRNCLVGKNYT--IKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVLLG------K  208 (296)
T ss_pred             HHHHHHHHHHHc-CccccccchhceeecCCCc--eEEccccceeecccCcceeecCcCCCCceecCHHHhhcC------C
Confidence            999999999995 9999999999999998866  999999998765322211   123456689999998732      3


Q ss_pred             CCCCcchhhHHH
Q psy320          152 LDPRVDPTSIKM  163 (202)
Q Consensus       152 ~~~~~Diwsl~~  163 (202)
                      ++.++|+||+|+
T Consensus       209 ~~~~~Dv~slG~  220 (296)
T cd05051         209 FTTKSDVWAFGV  220 (296)
T ss_pred             CCccchhhhhHH
Confidence            678999999985

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.93  E-value=8.2e-25  Score=169.16  Aligned_cols=157  Identities=24%  Similarity=0.332  Sum_probs=125.8

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ...+|+.+++++ +||  ||+++++++.    .+...++|+||++++|.+++.... +.+++..++.++.|++.||.|||
T Consensus        45 ~~~~e~~~l~~~-~~~--~i~~~~~~~~----~~~~~~~v~e~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH  116 (286)
T cd07832          45 QALREIKALQAC-QHP--YVVKLLDVFP----HGSGFVLVMEYMPSDLSEVLRDEE-RPLPEAQVKSYMRMLLKGVAYMH  116 (286)
T ss_pred             HHHHHHHHHHhC-CCC--CCcceeeEEe----cCCeeEEEecccCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHH
Confidence            455788888888 455  9999999998    567999999999999999987654 55999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccC--CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD--QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~--~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      +. |++|+||+|+||+++.++.  ++++|||.+........  .....++..|++||.+..     ...++.++|+||+|
T Consensus       117 ~~-~i~H~dl~p~ni~~~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-----~~~~~~~~Di~slG  188 (286)
T cd07832         117 AN-GIMHRDLKPANLLISADGV--LKIADFGLARLFSEEEPRLYSHQVATRWYRAPELLYG-----ARKYDPGVDLWAVG  188 (286)
T ss_pred             HC-CeecCCcCHHHEEEcCCCc--EEEeeeeecccccCCCCCccccccCcccccCceeeec-----cccCCchhHHHHHH
Confidence            95 9999999999999998766  99999999987654321  223467889999998752     23356799999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +.      +..+..|.+++..
T Consensus       189 ~~------l~~l~tg~~~~~~  203 (286)
T cd07832         189 CI------FAELLNGSPLFPG  203 (286)
T ss_pred             HH------HHHHHcCCcCcCC
Confidence            63      3345556666643

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.93  E-value=1.2e-24  Score=169.18  Aligned_cols=157  Identities=18%  Similarity=0.203  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      ..+|+.++.++ +||  ||+++++++...  +....|+|+||+.++|.+++.... ..+++..++.++.|++.||.|||+
T Consensus        51 ~~~e~~~l~~l-~h~--ni~~~~~~~~~~--~~~~~~lv~e~~~~~L~~~~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~  124 (293)
T cd07843          51 SLREINILLKL-QHP--NIVTVKEVVVGS--NLDKIYMVMEYVEHDLKSLMETMK-QPFLQSEVKCLMLQLLSGVAHLHD  124 (293)
T ss_pred             HHHHHHHHHhc-CCC--CEEEEEEEEEec--CCCcEEEEehhcCcCHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            45688888888 455  999999998732  237999999999779999887644 358999999999999999999999


Q ss_pred             hCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHH
Q psy320           86 KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~  164 (202)
                      . |++|+||+|+||+++.++.  ++|+|||.+....... ......++..|++||.+...     ..++.++|+||+|+.
T Consensus       125 ~-~i~H~dl~p~nili~~~~~--~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-----~~~~~~~Di~slG~~  196 (293)
T cd07843         125 N-WILHRDLKTSNLLLNNRGI--LKICDFGLAREYGSPLKPYTQLVVTLWYRAPELLLGA-----KEYSTAIDMWSVGCI  196 (293)
T ss_pred             C-CeeeccCCHHHEEECCCCc--EEEeecCceeeccCCccccccccccccccCchhhcCC-----ccccchhhHHHHHHH
Confidence            5 9999999999999998776  9999999998765432 22234567889999988632     224678999999863


Q ss_pred             HHHHHHHHHHHhcCCCCC
Q psy320          165 TTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~  182 (202)
                            +..+..|.++|.
T Consensus       197 ------l~~l~~g~~~f~  208 (293)
T cd07843         197 ------FAELLTKKPLFP  208 (293)
T ss_pred             ------HHHHHhCCCCCC
Confidence                  224445776664

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=2.2e-24  Score=166.24  Aligned_cols=158  Identities=13%  Similarity=0.206  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++.++...|+|++++++++.    .+...|+||||+ +++|.+++...   .+++..+..++.|++.|+.||
T Consensus        45 ~~~~e~~~l~~l~~~~~~~vi~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~~---~l~~~~~~~i~~~i~~~l~~l  117 (277)
T cd06917          45 DIQREVALLSQLRQSQPPNITKYYGSYL----KGPRLWIIMEYAEGGSVRTLMKAG---PIAEKYISVIIREVLVALKYI  117 (277)
T ss_pred             HHHHHHHHHHHhccCCCCCeeeEeeeee----eCCEEEEEEecCCCCcHHHHHHcc---CCCHHHHHHHHHHHHHHHHHH
Confidence            3456888888886444669999999998    466899999999 89999988653   489999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC-CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD-QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~-~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |+. |++|+||+|+||+++.++.  ++++|||.+........ .....++..|++||.+..     ...++.++|+||+|
T Consensus       118 h~~-~i~H~dl~p~ni~i~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-----~~~~~~~~Dv~slG  189 (277)
T cd06917         118 HKV-GVIHRDIKAANILVTNTGN--VKLCDFGVAALLNQNSSKRSTFVGTPYWMAPEVITE-----GKYYDTKADIWSLG  189 (277)
T ss_pred             HhC-CcccCCcCHHHEEEcCCCC--EEEccCCceeecCCCccccccccCCcceeCHHHhcc-----CCccccchhHHHHH
Confidence            996 9999999999999998776  99999999987654322 223467888999999862     23356799999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +.      +..+..|.++|..
T Consensus       190 ~~------l~~ll~g~~p~~~  204 (277)
T cd06917         190 IT------IYEMATGNPPYSD  204 (277)
T ss_pred             HH------HHHHHhCCCCCCC
Confidence            63      2245557777643

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.93  E-value=1e-24  Score=169.34  Aligned_cols=142  Identities=14%  Similarity=0.154  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC----------------------CC
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK----------------------FQ   62 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~----------------------~~   62 (202)
                      ..+|+..++.+ +||  ||+++++.|.    .....++++||+ +++|.+++....                      .+
T Consensus        50 ~~~E~~~l~~l-~h~--~iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (290)
T cd05045          50 LLSEFNLLKQV-NHP--HVIKLYGACS----QDGPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDER  122 (290)
T ss_pred             HHHHHHHHhhC-CCC--CEeeEEEEEe----cCCCcEEEEEecCCCCHHHHHHhcCCccccccccccccccccccCcccc
Confidence            45688888888 455  9999999988    455789999999 899999986431                      13


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC---CCCCCCCccchhhH
Q psy320           63 PAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD---QQSSSKTKSKIFCE  139 (202)
Q Consensus        63 ~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~ape  139 (202)
                      .++...+..++.|++.||.|||+. +++|+||+|+||+++.++.  ++|+|||.++.......   .....++..|++||
T Consensus       123 ~l~~~~~~~i~~~i~~~l~~LH~~-~ivH~dikp~nill~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE  199 (290)
T cd05045         123 ALTMGDLISFAWQISRGMQYLAEM-KLVHRDLAARNVLVAEGRK--MKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIE  199 (290)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHC-CeehhhhhhheEEEcCCCc--EEeccccccccccCccchhcccCCCCCccccCHH
Confidence            478899999999999999999995 9999999999999988766  99999999986533221   11234556899999


Q ss_pred             HHHhhhhccCCCCCCCcchhhHHH
Q psy320          140 ILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus       140 ~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      ....      ..++.++|+||+|+
T Consensus       200 ~~~~------~~~~~~~Di~slG~  217 (290)
T cd05045         200 SLFD------HIYTTQSDVWSFGV  217 (290)
T ss_pred             HHcc------CCcchHhHHHHHHH
Confidence            8863      33677999999985

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.93  E-value=1.3e-24  Score=166.85  Aligned_cols=163  Identities=16%  Similarity=0.152  Sum_probs=119.9

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC---CCCCCHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK---FQPAPLVVAKIIVNQILEGL   80 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~---~~~~~~~~~~~~~~qi~~~l   80 (202)
                      .+.+|+..++++ +||  ||+++++++.    +....++||||+ +++|.+++....   ....+...+..++.|++.|+
T Consensus        41 ~~~~E~~~l~~l-~h~--~iv~~~~~~~----~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al  113 (269)
T cd05087          41 KFLEEAQPYRSL-QHS--NLLQCLGQCT----EVTPYLLVMEFCPLGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGL  113 (269)
T ss_pred             HHHHHHHHHHhC-CCC--CEeeEEEEEc----CCCCcEEEEECCCCCcHHHHHHHhhhcccccccHHHHHHHHHHHHHHH
Confidence            345678888888 455  9999999988    456789999999 899999987532   12356678889999999999


Q ss_pred             HHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC---CCCCCCCccchhhHHHHhhhhc-cCCCCCCCc
Q psy320           81 NHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD---QQSSSKTKSKIFCEILEQCRLN-QDFRLDPRV  156 (202)
Q Consensus        81 ~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~ape~~~~~~~~-~~~~~~~~~  156 (202)
                      .|||++ +++|+||||+||+++.++.  ++|+|||.+........   .....++..|+|||.+...... ....++.++
T Consensus       114 ~~lH~~-~i~H~dlkp~nil~~~~~~--~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~  190 (269)
T cd05087         114 LHLHKN-NFIHSDLALRNCLLTADLT--VKIGDYGLSHNKYKEDYYVTPDQLWVPLRWIAPELVDEVHGNLLVVDQTKES  190 (269)
T ss_pred             HHHHHC-CEeccccCcceEEEcCCCc--EEECCccccccccCcceeecCCCcCCcccccCHhHhccccccccccCCCccc
Confidence            999996 9999999999999998776  99999999875432211   1223567789999998632100 012356799


Q ss_pred             chhhHHHHHHHHHHHHHHHhcCCCCC
Q psy320          157 DPTSIKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       157 Diwsl~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      |+||+|+..     ++.+..|.++|.
T Consensus       191 DiwslG~~l-----~el~~~g~~p~~  211 (269)
T cd05087         191 NVWSLGVTI-----WELFELGSQPYR  211 (269)
T ss_pred             hhHHHHHHH-----HHHHhCCCCCCC
Confidence            999998632     222223776664

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.93  E-value=8.3e-25  Score=169.54  Aligned_cols=161  Identities=12%  Similarity=0.147  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHH---HcCCCCCCHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMI---RQKFQPAPLVVAKIIVNQILEGLN   81 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~---~~~~~~~~~~~~~~~~~qi~~~l~   81 (202)
                      ...+|+..+.++.+|+  ||+++++++.    .+...+++|||++.++.++..   ....+.+++..+..++.|++.||.
T Consensus        48 ~~~~e~~~l~~~~~~~--~iv~~~~~~~----~~~~~~~~~e~~~~~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~  121 (288)
T cd06616          48 RLLMDLDVVMRSSDCP--YIVKFYGALF----REGDCWICMELMDISLDKFYKYVYEVLKSVIPEEILGKIAVATVKALN  121 (288)
T ss_pred             HHHHHHHHHHHhcCCC--CEeeeeeEEe----cCCcEEEEEecccCCHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Confidence            3456777777775466  9999999988    456889999999766655443   222356999999999999999999


Q ss_pred             HHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           82 HLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        82 ~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      |||++++++||||||+||+++.++.  ++|+|||++.............++..|++||.+....   +..++.++|+||+
T Consensus       122 ~lh~~~~i~H~dlkp~Nil~~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~---~~~~~~~~Di~sl  196 (288)
T cd06616         122 YLKEELKIIHRDVKPSNILLDRNGN--IKLCDFGISGQLVDSIAKTRDAGCRPYMAPERIDPSA---RDGYDVRSDVWSL  196 (288)
T ss_pred             HHhhcCCeeccCCCHHHEEEccCCc--EEEeecchhHHhccCCccccccCccCccCHHHhcccc---ccCCcchhhhhHH
Confidence            9997559999999999999998776  9999999997664433333456788899999987331   2346789999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCC
Q psy320          162 KMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      |+..+      .+..|.++|.
T Consensus       197 G~il~------el~~g~~p~~  211 (288)
T cd06616         197 GITLY------EVATGKFPYP  211 (288)
T ss_pred             HHHHH------HHHhCCCCch
Confidence            86322      4445776664

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.93  E-value=1.1e-24  Score=170.44  Aligned_cols=143  Identities=15%  Similarity=0.166  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCC--------------CCCCHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKF--------------QPAPLVVAK   70 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~--------------~~~~~~~~~   70 (202)
                      ..+|+.+++.+.+||  ||+++++++.    .....|+||||+ +++|.+++.....              ..++...+.
T Consensus        70 ~~~e~~~l~~l~~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~  143 (307)
T cd05098          70 LISEMEMMKMIGKHK--NIINLLGACT----QDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLV  143 (307)
T ss_pred             HHHHHHHHHHhcCCC--CEeeEEEEEe----cCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHH
Confidence            445778788775566  9999999998    456899999999 8999999976421              247889999


Q ss_pred             HHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC---CCCCCCccchhhHHHHhhhhc
Q psy320           71 IIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ---QSSSKTKSKIFCEILEQCRLN  147 (202)
Q Consensus        71 ~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~---~~~~~~~~~~ape~~~~~~~~  147 (202)
                      .++.|++.||.|||+. |++|+||||+||+++.++.  ++|+|||.+.........   ....++..|++||.+..    
T Consensus       144 ~~~~qi~~aL~~lH~~-gi~H~dlkp~Nill~~~~~--~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~----  216 (307)
T cd05098         144 SCAYQVARGMEYLASK-KCIHRDLAARNVLVTEDNV--MKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFD----  216 (307)
T ss_pred             HHHHHHHHHHHHHHHC-CcccccccHHheEEcCCCc--EEECCCcccccccccchhhccccCCCccceeChHHhcc----
Confidence            9999999999999995 9999999999999998776  999999998765321111   11233467999998873    


Q ss_pred             cCCCCCCCcchhhHHH
Q psy320          148 QDFRLDPRVDPTSIKM  163 (202)
Q Consensus       148 ~~~~~~~~~Diwsl~~  163 (202)
                        ..++.++|+||+|+
T Consensus       217 --~~~~~~~DvwslG~  230 (307)
T cd05098         217 --RIYTHQSDVWSFGV  230 (307)
T ss_pred             --CCCCcHHHHHHHHH
Confidence              33677999999985

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.93  E-value=1.6e-24  Score=167.41  Aligned_cols=165  Identities=17%  Similarity=0.190  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecC--CceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGI--NGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~--~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ..+|+.+++++.+|+  ||++++++|.....  .....|++|||+ +++|.+++.......+++..++.++.|++.|+.|
T Consensus        59 ~~~e~~~l~~~~~h~--~i~~~~~~~~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~  136 (282)
T cd06636          59 IKLEINMLKKYSHHR--NIATYYGAFIKKSPPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAH  136 (282)
T ss_pred             HHHHHHHHHHhcCCC--cEEEEeeehhcccccCCCCEEEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence            455777777775566  99999999864321  356899999999 8899999977655568899999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccc-cCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQEC-HDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~-~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      ||+. |++|+||+|+||+++.++.  ++|+|||.+...... .......++..|+|||.+.... .++..++.++|+||+
T Consensus       137 LH~~-~ivH~dl~~~nili~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~-~~~~~~~~~~Dvwsl  212 (282)
T cd06636         137 LHAH-KVIHRDIKGQNVLLTENAE--VKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDE-NPDATYDYRSDIWSL  212 (282)
T ss_pred             HHHC-CcccCCCCHHHEEECCCCC--EEEeeCcchhhhhccccCCCcccccccccCHhhcCccc-CcCcCCCcccchhHH
Confidence            9995 9999999999999998876  999999998765422 2223456888999999876321 123456779999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCC
Q psy320          162 KMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      |+..+      .+..|.++|.
T Consensus       213 G~~l~------el~~g~~p~~  227 (282)
T cd06636         213 GITAI------EMAEGAPPLC  227 (282)
T ss_pred             HHHHH------HHHhCCCCcc
Confidence            86322      4444666653

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.93  E-value=7.4e-25  Score=168.14  Aligned_cols=142  Identities=13%  Similarity=0.160  Sum_probs=115.6

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+..++++ +||  ||+++++++.    .+...|+||||+ +++|.+++.+.. +.++...+..++.|++.|+.+|
T Consensus        51 ~~~~e~~~l~~l-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~l  122 (267)
T cd05066          51 DFLSEASIMGQF-DHP--NIIHLEGVVT----KSKPVMIVTEYMENGSLDAFLRKHD-GQFTVIQLVGMLRGIASGMKYL  122 (267)
T ss_pred             HHHHHHHHHHhC-CCC--CcceEEEEEe----cCCccEEEEEcCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHH
Confidence            456688888887 455  9999999998    466899999999 899999997654 4589999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC----CCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ----SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~----~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      |+. |++|+||||+||+++.++.  ++++|||.+..........    ....+..|++||.+...      .++.++|+|
T Consensus       123 H~~-~i~h~dlkp~nili~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~------~~~~~~Dv~  193 (267)
T cd05066         123 SDM-GYVHRDLAARNILVNSNLV--CKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYR------KFTSASDVW  193 (267)
T ss_pred             HHC-CEeehhhchhcEEECCCCe--EEeCCCCcccccccccceeeecCCCccceeecCHhHhccC------ccCchhhhH
Confidence            996 9999999999999987766  9999999998764322111    12234579999998743      367899999


Q ss_pred             hHHH
Q psy320          160 SIKM  163 (202)
Q Consensus       160 sl~~  163 (202)
                      |+|+
T Consensus       194 slG~  197 (267)
T cd05066         194 SYGI  197 (267)
T ss_pred             HHHH
Confidence            9985

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>KOG1006|consensus

Probab=99.93  E-value=5.5e-27  Score=173.01  Aligned_cols=143  Identities=15%  Similarity=0.195  Sum_probs=116.7

Q ss_pred             HHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHc---CCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            9 LIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQ---KFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         9 e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~---~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      |.+...+-.+.|  |||+++|+..    ++...|+-||.|..||..+.+.-   ...++++..+.++....+.||.||-.
T Consensus       112 e~d~~mks~~cp--~IVkfyGa~F----~EGdcWiCMELMd~SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~  185 (361)
T KOG1006|consen  112 EHDTVMKSSNCP--NIVKFYGALF----SEGDCWICMELMDISLDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKE  185 (361)
T ss_pred             HHHHHHhhcCCc--HHHHHhhhhh----cCCceeeeHHHHhhhHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHH
Confidence            444444444455  9999999988    45589999999988887766532   23459999999999999999999999


Q ss_pred             hCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           86 KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      ++.|+|||+||+|||++..|.  +||||||++-.....-.+....|...|+|||-+....    ..|+.++|+||||+
T Consensus       186 ~lkiIHRDvKPSNILldr~G~--vKLCDFGIcGqLv~SiAkT~daGCrpYmAPERi~p~~----~gyDiRSDvWSLGI  257 (361)
T KOG1006|consen  186 ELKIIHRDVKPSNILLDRHGD--VKLCDFGICGQLVDSIAKTVDAGCRPYMAPERIDPSD----KGYDIRSDVWSLGI  257 (361)
T ss_pred             HhhhhhccCChhheEEecCCC--EeeecccchHhHHHHHHhhhccCCccccChhccCCcc----CCcchhhhhhhhcc
Confidence            889999999999999999888  9999999998776555555678999999999998432    35889999999975

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.93  E-value=9.4e-25  Score=166.95  Aligned_cols=143  Identities=16%  Similarity=0.153  Sum_probs=114.9

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ..+.+|+++++++ +|+  |++++++++.     ....++||||+ +++|.+++.......+++..+..++.|++.||.|
T Consensus        46 ~~~~~E~~~l~~l-~h~--~i~~~~~~~~-----~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~  117 (260)
T cd05069          46 EAFLQEAQIMKKL-RHD--KLVPLYAVVS-----EEPIYIVTEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAY  117 (260)
T ss_pred             HHHHHHHHHHHhC-CCC--CeeeEEEEEc-----CCCcEEEEEcCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            3456788888888 555  9999998875     33578999999 7899999977654558999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC--CCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ--QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~--~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      ||+. |++|+||+|+||+++.++.  ++|+|||.+.........  ....++..|++||....      ..++.++|+||
T Consensus       118 lH~~-~i~H~dl~~~Nill~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~------~~~~~~~Di~s  188 (260)
T cd05069         118 IERM-NYIHRDLRAANILVGDNLV--CKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALY------GRFTIKSDVWS  188 (260)
T ss_pred             HHhC-CEeecccCcceEEEcCCCe--EEECCCccceEccCCcccccCCCccchhhCCHHHhcc------CCcChHHHHHH
Confidence            9996 9999999999999988776  999999999765432211  12235567999998763      33677999999


Q ss_pred             HHH
Q psy320          161 IKM  163 (202)
Q Consensus       161 l~~  163 (202)
                      +|+
T Consensus       189 lG~  191 (260)
T cd05069         189 FGI  191 (260)
T ss_pred             HHH
Confidence            986

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.93  E-value=7.8e-25  Score=167.06  Aligned_cols=156  Identities=22%  Similarity=0.269  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|++.++++ +||  ||+++++.+.    ++...++|+||+ +++|.+++...  ..+++..+..++.|++.||.||
T Consensus        46 ~~~~e~~~l~~l-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~~i~~~l~~l  116 (258)
T cd05578          46 NVLNERRILQEL-NHP--FLVNLWYSFQ----DEENMYLVVDLLLGGDLRYHLSQK--VKFSEEQVKFWICEIVLALEYL  116 (258)
T ss_pred             HHHHHHHHHHhC-CCC--ChHHHHHhhc----CCCeEEEEEeCCCCCCHHHHHHhc--CCcCHHHHHHHHHHHHHHHHHH
Confidence            345677777777 455  9999999998    677999999999 99999998765  3599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |+. |++|+||+|+||+++.++.  ++|+|||.+.............++..|++||.+...      .++.++|+||+|+
T Consensus       117 h~~-~i~h~dl~~~nil~~~~~~--~~l~d~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~------~~~~~~Di~slG~  187 (258)
T cd05578         117 HSK-GIIHRDIKPDNILLDEQGH--VHITDFNIATKVTPDTLTTSTSGTPGYMAPEVLCRQ------GYSVAVDWWSLGV  187 (258)
T ss_pred             HhC-CeeccCCCHHHeEEcCCCC--EEEeecccccccCCCccccccCCChhhcCHHHHccc------CCCCcccchhhHH
Confidence            995 9999999999999998877  999999998876544333345678889999998733      3677999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      .      +..+..|..++...
T Consensus       188 ~------l~~l~~g~~p~~~~  202 (258)
T cd05578         188 T------AYECLRGKRPYRGH  202 (258)
T ss_pred             H------HHHHHhCCCCCCCC
Confidence            3      22455577776643

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.93  E-value=1.4e-24  Score=167.77  Aligned_cols=158  Identities=13%  Similarity=0.147  Sum_probs=120.2

Q ss_pred             HHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHc--CCCCCCHHHHHHHHHHHHHHHHHHHhh
Q psy320            9 LIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQ--KFQPAPLVVAKIIVNQILEGLNHLHTK   86 (202)
Q Consensus         9 e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~--~~~~~~~~~~~~~~~qi~~~l~~lh~~   86 (202)
                      |+..+.+..+|  |||+++++++.    .....|++|||+.++|.+++...  ....+++..++.++.|++.|+.|||++
T Consensus        49 e~~~~~~~~~~--~~iv~~~~~~~----~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~  122 (283)
T cd06617          49 DLDISMRSVDC--PYTVTFYGALF----REGDVWICMEVMDTSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSK  122 (283)
T ss_pred             HHHHHHHHcCC--CCeeeeeEEEe----cCCcEEEEhhhhcccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhc
Confidence            44443333344  49999999998    45689999999988998887653  234589999999999999999999985


Q ss_pred             CCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHHH
Q psy320           87 HNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTT  166 (202)
Q Consensus        87 ~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~~  166 (202)
                      ++++|+||||+||+++.++.  ++|+|||.+.............++..|++||.+....  ....++.++|+||+|+.  
T Consensus       123 ~~i~h~dlkp~nil~~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~--~~~~~~~~~Di~slG~~--  196 (283)
T cd06617         123 LSVIHRDVKPSNVLINRNGQ--VKLCDFGISGYLVDSVAKTIDAGCKPYMAPERINPEL--NQKGYDVKSDVWSLGIT--  196 (283)
T ss_pred             CCeecCCCCHHHEEECCCCC--EEEeecccccccccccccccccCCccccChhhcCCcc--cccccCccccchhhHHH--
Confidence            59999999999999998776  9999999998764333333356788899999886422  12346779999999863  


Q ss_pred             HHHHHHHHHhcCCCCC
Q psy320          167 FCEILEQCRLNHQDFR  182 (202)
Q Consensus       167 ~~~~~~~~~~~~~~~~  182 (202)
                          +..+..|..++.
T Consensus       197 ----l~~l~~g~~p~~  208 (283)
T cd06617         197 ----MIELATGRFPYD  208 (283)
T ss_pred             ----HHHHHhCCCCCC
Confidence                224555766664

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>KOG4645|consensus

Probab=99.93  E-value=6.9e-27  Score=201.48  Aligned_cols=163  Identities=20%  Similarity=0.266  Sum_probs=130.0

Q ss_pred             HHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            7 TNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         7 ~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      .+|..+++.+ +||  |+|+++|+=.    +....++-|||| +|+|.+++....  -.++.....+..|++.|+.|||+
T Consensus      1282 ~eEm~vlE~l-nHp--NlV~YyGVEv----HRekv~IFMEyC~~GsLa~ll~~gr--i~dE~vt~vyt~qll~gla~LH~ 1352 (1509)
T KOG4645|consen 1282 AEEMKVLEGL-NHP--NLVRYYGVEV----HREKVYIFMEYCEGGSLASLLEHGR--IEDEMVTRVYTKQLLEGLAYLHE 1352 (1509)
T ss_pred             HHHHHHHHhc-cCc--cccccCceee----cHHHHHHHHHHhccCcHHHHHHhcc--hhhhhHHHHHHHHHHHHHHHHHh
Confidence            4688888888 566  9999999988    567899999999 999999997653  37888889999999999999999


Q ss_pred             hCCccccCCCCCceeeecCCcceeEEeeccccccccccc-----CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           86 KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-----DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-----~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                       .|||||||||+||+++.++.  +|+.|||.|+...+..     +.....||+-|||||++.+....+   ...+.||||
T Consensus      1353 -~gIVHRDIK~aNI~Ld~~g~--iK~~DFGsa~ki~~~~~~~~~el~~~~GT~~YMAPEvit~t~~kG---~~~A~DiWs 1426 (1509)
T KOG4645|consen 1353 -HGIVHRDIKPANILLDFNGL--IKYGDFGSAVKIKNNAQTMPGELQSMMGTPMYMAPEVITGTKGKG---HGGAADIWS 1426 (1509)
T ss_pred             -cCceecCCCccceeeecCCc--EEeecccceeEecCchhcCCHHHHhhcCCchhcCchhhcccccCC---CCcchhhhc
Confidence             59999999999999999886  9999999999876532     223568999999999999665322   234899999


Q ss_pred             HHHH--HHHH------------HHHHHHHhcCCCCCCC
Q psy320          161 IKMY--TTFC------------EILEQCRLNHQDFRPD  184 (202)
Q Consensus       161 l~~~--~~~~------------~~~~~~~~~~~~~~~~  184 (202)
                      +|+.  +|.+            +++.....|+.|--|.
T Consensus      1427 lGCVVlEM~tGkrPW~~~dne~aIMy~V~~gh~Pq~P~ 1464 (1509)
T KOG4645|consen 1427 LGCVVLEMATGKRPWAELDNEWAIMYHVAAGHKPQIPE 1464 (1509)
T ss_pred             ccceEEEeecCCCchhhccchhHHHhHHhccCCCCCch
Confidence            9863  2222            5566665565554443

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.93  E-value=1.4e-24  Score=168.57  Aligned_cols=156  Identities=18%  Similarity=0.178  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ...+|+..++.+ +|+  ||+++++++.    .+...|+|+||+++++.+.+.... +.+++..++.++.|++.||.|||
T Consensus        49 ~~~~e~~~l~~l-~h~--ni~~~~~~~~----~~~~~~lv~e~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~~L~~lH  120 (291)
T cd07870          49 TAIREASLLKGL-KHA--NIVLLHDIIH----TKETLTFVFEYMHTDLAQYMIQHP-GGLHPYNVRLFMFQLLRGLAYIH  120 (291)
T ss_pred             HHHHHHHHHHhc-CCC--CEeEEEEEEe----cCCeEEEEEecccCCHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHH
Confidence            456788888888 555  9999999998    566899999999888887775543 45788899999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      +. |++|+||||+||+++.++.  ++|+|||.++...... ......++..|++||.+...     ..++.++|+||+|+
T Consensus       121 ~~-~i~H~dlkp~Nil~~~~~~--~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-----~~~~~~~Dv~slG~  192 (291)
T cd07870         121 GQ-HILHRDLKPQNLLISYLGE--LKLADFGLARAKSIPSQTYSSEVVTLWYRPPDVLLGA-----TDYSSALDIWGAGC  192 (291)
T ss_pred             hC-CcccCCCChHHEEEcCCCc--EEEeccccccccCCCCCCCCCccccccccCCceeecC-----CCCCcHHHHHHHHH
Confidence            95 9999999999999988776  9999999987643322 22234567889999987621     23566899999986


Q ss_pred             HHHHHHHHHHHHhcCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~  182 (202)
                      ..+      .+..|.++|.
T Consensus       193 ~l~------~l~~g~~~f~  205 (291)
T cd07870         193 IFI------EMLQGQPAFP  205 (291)
T ss_pred             HHH------HHHhCCCCCC
Confidence            322      3444666553

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.93  E-value=2.5e-24  Score=167.32  Aligned_cols=163  Identities=18%  Similarity=0.187  Sum_probs=124.8

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecC-CceEEEEEEccccccHHHHHHHcC---CCCCCHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGI-NGTHVCTVTEIMAECLCNYMIRQK---FQPAPLVVAKIIVNQILEGL   80 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~-~~~~~~lv~e~~~~sL~~~~~~~~---~~~~~~~~~~~~~~qi~~~l   80 (202)
                      ...+|+.+++.+..||  ||+++++++..... .....|+||||+.++|.+++....   ...+++..++.++.|++.||
T Consensus        46 ~~~~E~~~l~~l~~~~--~i~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L  123 (295)
T cd07837          46 TALREISLLQMLSESI--YIVRLLDVEHVEEKNGKPSLYLVFEYLDSDLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGV  123 (295)
T ss_pred             HHHHHHHHHHHccCCC--CccceeeeEeecCCCCCceEEEEeeccCcCHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHH
Confidence            4567888898885455  99999999885432 234589999999778998886543   23589999999999999999


Q ss_pred             HHHHhhCCccccCCCCCceeeec-CCcceeEEeecccccccccc-cCCCCCCCCccchhhHHHHhhhhccCCCCCCCcch
Q psy320           81 NHLHTKHNLVHTSIKPESIFFKA-DHVYIMTLINIQQATTHQEC-HDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDP  158 (202)
Q Consensus        81 ~~lh~~~~ivH~dl~p~nil~~~-~~~~~~~l~Dfg~a~~~~~~-~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Di  158 (202)
                      .|||++ |++|+||+|+||+++. ++.  ++|+|||.+...... .......+++.|+|||.+..     ...++.++|+
T Consensus       124 ~~LH~~-~i~H~dl~~~nil~~~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-----~~~~~~~~Di  195 (295)
T cd07837         124 AHCHKH-GVMHRDLKPQNLLVDKQKGL--LKIADLGLGRAFSIPVKSYTHEIVTLWYRAPEVLLG-----STHYSTPVDI  195 (295)
T ss_pred             HHHHHC-CeeecCCChHHEEEecCCCe--EEEeecccceecCCCccccCCcccccCCCChHHhhC-----CCCCCchHHH
Confidence            999996 9999999999999987 444  999999998865432 22223456778999999862     2335779999


Q ss_pred             hhHHHHHHHHHHHHHHHhcCCCCCC
Q psy320          159 TSIKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       159 wsl~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      ||+|+..+      .+..|.++|..
T Consensus       196 ~slG~~l~------~l~~g~~~~~~  214 (295)
T cd07837         196 WSVGCIFA------EMSRKQPLFPG  214 (295)
T ss_pred             HHHHHHHH------HHHcCCCCCCC
Confidence            99986332      45557766653

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.93  E-value=1e-24  Score=167.00  Aligned_cols=153  Identities=18%  Similarity=0.220  Sum_probs=123.2

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|++.++++ +|+  ||+++.++|.    .....++|+||+ +++|.+++.+..  .+++..+..++.|++.||.|+|
T Consensus        49 ~~~e~~~l~~l-~~~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH  119 (265)
T cd06631          49 LQEEVDLLKSL-KHV--NIVQYLGTCL----DDNTISIFMEFVPGGSISSILNRFG--PLPEPVFCKYTKQILDGVAYLH  119 (265)
T ss_pred             HHHHHHHHHhc-CCC--CEeeEeeEee----cCCeEEEEEecCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHH
Confidence            45678888888 455  9999999998    567999999999 999999997653  4899999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-------CCCCCCCCccchhhHHHHhhhhccCCCCCCCcc
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-------DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVD  157 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-------~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~D  157 (202)
                      +. +++|+||+|+||+++.++.  ++|+|||.+.......       ......++..|++||.+..      ..++.++|
T Consensus       120 ~~-~i~H~dl~p~nil~~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~------~~~~~~~D  190 (265)
T cd06631         120 NN-CVVHRDIKGNNVMLMPNGI--IKLIDFGCARRLAWVGLHGTHSNMLKSMHGTPYWMAPEVINE------SGYGRKSD  190 (265)
T ss_pred             hC-CcccCCcCHHhEEECCCCe--EEeccchhhHhhhhccccccccccccccCCCccccChhhhcC------CCCcchhh
Confidence            96 9999999999999988776  9999999987643211       1123457888999999873      33677999


Q ss_pred             hhhHHHHHHHHHHHHHHHhcCCCCC
Q psy320          158 PTSIKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       158 iwsl~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +||+|+.      +..+..|..+|.
T Consensus       191 v~slG~~------~~~l~~g~~p~~  209 (265)
T cd06631         191 IWSIGCT------VFEMATGKPPLA  209 (265)
T ss_pred             HHHHHHH------HHHHHhCCCccc
Confidence            9999863      335555777664

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.93  E-value=1.6e-24  Score=165.22  Aligned_cols=141  Identities=21%  Similarity=0.269  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+.+++.+ +|+  ||+++++++.    .....++||||+ +++|.+++.......+++..+..++.|++.|+.||
T Consensus        46 ~~~~e~~~l~~l-~~~--~i~~~~~~~~----~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l  118 (256)
T cd05039          46 AFLAEASVMTTL-RHP--NLVQLLGVVL----QGNPLYIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYL  118 (256)
T ss_pred             HHHHHHHHHHhc-CCc--ceeeeEEEEc----CCCCeEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            456688888888 455  9999999988    466899999999 79999999876644699999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |+. |++|+||+|+||+++.++.  ++|+|||.++.......  ....+..|.+||.+...      .++.++|+||+|+
T Consensus       119 h~~-~i~H~di~p~Nili~~~~~--~~l~d~g~~~~~~~~~~--~~~~~~~~~ape~~~~~------~~~~~~Di~slG~  187 (256)
T cd05039         119 EEK-NFVHRDLAARNVLVSEDLV--AKVSDFGLAKEASQGQD--SGKLPVKWTAPEALREK------KFSTKSDVWSFGI  187 (256)
T ss_pred             HhC-CccchhcccceEEEeCCCC--EEEcccccccccccccc--cCCCcccccCchhhcCC------cCCcHHHHHHHHH
Confidence            996 9999999999999998776  99999999987632211  23345579999988633      3667899999985

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.93  E-value=1.6e-24  Score=168.95  Aligned_cols=154  Identities=18%  Similarity=0.276  Sum_probs=123.5

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+..++.+ +||  ||++++++|.    .+...|+|+||+ +++|..++...   .+++..+..++.|++.|+.+|
T Consensus        62 ~~~~e~~~l~~l-~h~--~iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~~---~l~~~~~~~i~~~l~~al~~L  131 (296)
T cd06655          62 LIINEILVMKEL-KNP--NIVNFLDSFL----VGDELFVVMEYLAGGSLTDVVTET---CMDEAQIAAVCRECLQALEFL  131 (296)
T ss_pred             HHHHHHHHHHhc-CCC--ceeeeeeeEe----cCceEEEEEEecCCCcHHHHHHhc---CCCHHHHHHHHHHHHHHHHHH
Confidence            445688888887 455  9999999998    567999999999 99999988653   489999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC-CCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ-QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~-~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |+. |++|+||+|+||+++.++.  ++|+|||.+......... ....++..|++||.+..      ..++.++|+||+|
T Consensus       132 H~~-~i~H~dL~p~Nili~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~Dv~slG  202 (296)
T cd06655         132 HAN-QVIHRDIKSDNVLLGMDGS--VKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTR------KAYGPKVDIWSLG  202 (296)
T ss_pred             HHC-CcccCCCCHHHEEECCCCC--EEEccCccchhcccccccCCCcCCCccccCcchhcC------CCCCchhhHHHHH
Confidence            996 9999999999999988776  999999998865433222 23467889999999873      3367799999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +..+      .+..|.++|..
T Consensus       203 vil~------~lltg~~pf~~  217 (296)
T cd06655         203 IMAI------EMVEGEPPYLN  217 (296)
T ss_pred             HHHH------HHHhCCCCCCC
Confidence            6332      44457666643

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.93  E-value=1.6e-24  Score=167.25  Aligned_cols=144  Identities=9%  Similarity=0.083  Sum_probs=113.2

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCC-----CCCCHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKF-----QPAPLVVAKIIVNQILEG   79 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~-----~~~~~~~~~~~~~qi~~~   79 (202)
                      +.+|+..++.+ +|+  ||+++++++.    +....++||||+ +++|.+++.....     ..+++..+..++.|++.|
T Consensus        56 ~~~e~~~l~~l-~~~--~i~~~~~~~~----~~~~~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~  128 (277)
T cd05036          56 FLMEALIMSKF-NHQ--NIVRLIGVSF----ERLPRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKG  128 (277)
T ss_pred             HHHHHHHHHhC-CCC--CEeeEEEEEc----cCCCcEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence            45677777777 455  9999999988    455789999999 9999999876531     248899999999999999


Q ss_pred             HHHHHhhCCccccCCCCCceeeecCCc-ceeEEeecccccccccccCCC---CCCCCccchhhHHHHhhhhccCCCCCCC
Q psy320           80 LNHLHTKHNLVHTSIKPESIFFKADHV-YIMTLINIQQATTHQECHDQQ---SSSKTKSKIFCEILEQCRLNQDFRLDPR  155 (202)
Q Consensus        80 l~~lh~~~~ivH~dl~p~nil~~~~~~-~~~~l~Dfg~a~~~~~~~~~~---~~~~~~~~~ape~~~~~~~~~~~~~~~~  155 (202)
                      +.|||++ +++|+||+|+||+++.++. ..++|+|||.++.........   ....+..|++||.+...      .++.+
T Consensus       129 l~~LH~~-~ivH~dlkp~nil~~~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~------~~~~~  201 (277)
T cd05036         129 CKYLEEN-HFIHRDIAARNCLLTCKGPGRVAKIADFGMARDIYRASYYRKGGRAMLPIKWMPPEAFLDG------IFTSK  201 (277)
T ss_pred             HHHHHHC-CEeecccchheEEEeccCCCcceEeccCccccccCCccceecCCCCCccHhhCCHHHHhcC------CcCch
Confidence            9999996 9999999999999986542 248999999998763221111   12234579999999733      37889


Q ss_pred             cchhhHHH
Q psy320          156 VDPTSIKM  163 (202)
Q Consensus       156 ~Diwsl~~  163 (202)
                      +|+||+|+
T Consensus       202 ~DiwslG~  209 (277)
T cd05036         202 TDVWSFGV  209 (277)
T ss_pred             hHHHHHHH
Confidence            99999985

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.93  E-value=1.5e-24  Score=166.13  Aligned_cols=155  Identities=14%  Similarity=0.193  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|++.++++ +|+  ||+++++++.    .+...++|+||+ +++|.+++.+.  +.+++..+..++.|++.||.+|
T Consensus        49 ~~~~e~~~l~~l-~h~--~iv~~~~~~~----~~~~~~~v~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~ql~~al~~L  119 (268)
T cd06630          49 ALRKEIRLMARL-NHP--HIIRMLGATC----EDSHFNLFVEWMAGGSVSHLLSKY--GAFKEAVIINYTEQLLRGLSYL  119 (268)
T ss_pred             HHHHHHHHHHHc-CCC--ceehhhceec----cCCeEEEEEeccCCCcHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHH
Confidence            456788888888 455  9999999998    567999999999 89999998765  3589999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC-----CCCCCCccchhhHHHHhhhhccCCCCCCCcch
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ-----QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDP  158 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~-----~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Di  158 (202)
                      |+. |++|+||+|+||+++.++. .++|+|||.+.........     ....++..|++||.+..      ..++.++|+
T Consensus       120 H~~-~i~H~~i~~~nil~~~~~~-~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~------~~~~~~~Dv  191 (268)
T cd06630         120 HEN-QIIHRDVKGANLLIDSTGQ-RLRIADFGAAARLAAKGTGAGEFQGQLLGTIAFMAPEVLRG------EQYGRSCDV  191 (268)
T ss_pred             HhC-CeecCCCCHHHEEEcCCCC-EEEEcccccccccccccccCCccccccccccceeCHhHhcc------CCCCcccch
Confidence            996 9999999999999976542 4899999998876543211     12356778999999863      336779999


Q ss_pred             hhHHHHHHHHHHHHHHHhcCCCCC
Q psy320          159 TSIKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       159 wsl~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      ||+|+..+      .+..|..++.
T Consensus       192 ~slG~~l~------~l~~g~~p~~  209 (268)
T cd06630         192 WSVGCVII------EMATAKPPWN  209 (268)
T ss_pred             HHHHHHHH------HHHhCCCCCC
Confidence            99986322      4444777664

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.93  E-value=1.8e-24  Score=168.40  Aligned_cols=158  Identities=15%  Similarity=0.044  Sum_probs=119.0

Q ss_pred             HHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhCCc
Q psy320           10 IKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNL   89 (202)
Q Consensus        10 ~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~~i   89 (202)
                      +..+..++...|++|+++++.+..........+++++++..++.+.+....  ..++..+..++.|++.||.|||+. ++
T Consensus        71 ~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~qi~~~l~~lH~~-~i  147 (294)
T PHA02882         71 IALWKNIHNIDHLGIPKYYGCGSFKRCRMYYRFILLEKLVENTKEIFKRIK--CKNKKLIKNIMKDMLTTLEYIHEH-GI  147 (294)
T ss_pred             HHHHHHhccCCCCCCCcEEEeeeEecCCceEEEEEEehhccCHHHHHHhhc--cCCHHHHHHHHHHHHHHHHHHHhC-Ce
Confidence            344444444457799999998765333344678899988778877776542  367888999999999999999996 99


Q ss_pred             cccCCCCCceeeecCCcceeEEeeccccccccccc--------CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           90 VHTSIKPESIFFKADHVYIMTLINIQQATTHQECH--------DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        90 vH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~--------~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      +||||||+|||++.++.  ++|+|||+|+.+...+        ......+|+.|++||....      ..++.++|+||+
T Consensus       148 iHrDiKp~Nill~~~~~--~~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~------~~~~~~~DiwSl  219 (294)
T PHA02882        148 SHGDIKPENIMVDGNNR--GYIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNG------ACVTRRGDLESL  219 (294)
T ss_pred             ecCCCCHHHEEEcCCCc--EEEEEcCCceeeccCCcccccccccccccCCCccccCHHHhCC------CCCCcHHHHHHH
Confidence            99999999999987766  9999999998764221        1112468999999999873      337889999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCC
Q psy320          162 KMYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      |+..      ..+..|.+||...
T Consensus       220 G~~l------~el~~g~~P~~~~  236 (294)
T PHA02882        220 GYCM------LKWAGIKLPWKGF  236 (294)
T ss_pred             HHHH------HHHHhCCCCCCcc
Confidence            8732      2455688887644

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.93  E-value=1.7e-24  Score=169.79  Aligned_cols=162  Identities=19%  Similarity=0.177  Sum_probs=124.6

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcC---CCCCCHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQK---FQPAPLVVAKIIVNQILEGLN   81 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~---~~~~~~~~~~~~~~qi~~~l~   81 (202)
                      ...+|+.+++++ +||  ||+++++++...  .+...|+||||++++|.+++....   ...+++..++.++.|++.||.
T Consensus        48 ~~~~e~~~l~~l-~h~--~i~~~~~~~~~~--~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~  122 (316)
T cd07842          48 SACREIALLREL-KHE--NVVSLVEVFLEH--ADKSVYLLFDYAEHDLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVH  122 (316)
T ss_pred             HHHHHHHHHHhc-CCC--CccceEEEEeCC--CCceEEEEEeCCCcCHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHH
Confidence            456788888888 555  999999999842  136899999999778887775432   125899999999999999999


Q ss_pred             HHHhhCCccccCCCCCceeeec----CCcceeEEeecccccccccccC----CCCCCCCccchhhHHHHhhhhccCCCCC
Q psy320           82 HLHTKHNLVHTSIKPESIFFKA----DHVYIMTLINIQQATTHQECHD----QQSSSKTKSKIFCEILEQCRLNQDFRLD  153 (202)
Q Consensus        82 ~lh~~~~ivH~dl~p~nil~~~----~~~~~~~l~Dfg~a~~~~~~~~----~~~~~~~~~~~ape~~~~~~~~~~~~~~  153 (202)
                      |||++ +++||||+|+||+++.    ++.  ++++|||.+........    .....++..|+|||.+..     ...++
T Consensus       123 ~lH~~-~i~h~dlkp~Nil~~~~~~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-----~~~~~  194 (316)
T cd07842         123 YLHSN-WVLHRDLKPANILVMGEGPERGV--VKIGDLGLARLFNAPLKPLADLDPVVVTIWYRAPELLLG-----ARHYT  194 (316)
T ss_pred             HHHhC-CEeeCCCCHHHEEEcCCCCccce--EEECCCccccccCCCcccccccCCccccccccCHHHHhC-----CCCCC
Confidence            99996 9999999999999988    544  99999999987643222    112356788999998763     23356


Q ss_pred             CCcchhhHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy320          154 PRVDPTSIKMYTTFCEILEQCRLNHQDFRPDP  185 (202)
Q Consensus       154 ~~~Diwsl~~~~~~~~~~~~~~~~~~~~~~~~  185 (202)
                      .++|+||+|+.      +..+..|.++|....
T Consensus       195 ~~~Dv~slG~~------l~~l~~~~~~~~~~~  220 (316)
T cd07842         195 KAIDIWAIGCI------FAELLTLEPIFKGRE  220 (316)
T ss_pred             cHHHHHHHHHH------HHHHHhcCCCCcCCc
Confidence            78999999963      234555888876443

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.93  E-value=2.3e-24  Score=167.83  Aligned_cols=143  Identities=15%  Similarity=0.202  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCC---------CCCCHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKF---------QPAPLVVAKIIVN   74 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~---------~~~~~~~~~~~~~   74 (202)
                      .+.+|++.++.+ +|+  ||+++++++.    .....++||||+ +++|.+++.....         ..+++..+..++.
T Consensus        65 ~~~~E~~~l~~l-~~~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (296)
T cd05095          65 DFLKEIKIMSRL-KDP--NIIRLLAVCI----TSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMAT  137 (296)
T ss_pred             HHHHHHHHHHhC-CCC--CcceEEEEEe----cCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHH
Confidence            456788888888 555  9999999998    456799999999 8999999876431         2366788999999


Q ss_pred             HHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC---CCCCCccchhhHHHHhhhhccCCC
Q psy320           75 QILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ---SSSKTKSKIFCEILEQCRLNQDFR  151 (202)
Q Consensus        75 qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~---~~~~~~~~~ape~~~~~~~~~~~~  151 (202)
                      |++.|+.|||+. |++|+||||+||+++.++.  ++|+|||.+..........   ....+..|++||.....      .
T Consensus       138 ~i~~al~~lH~~-~i~H~dlkp~Nili~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~------~  208 (296)
T cd05095         138 QIASGMKYLSSL-NFVHRDLATRNCLVGKNYT--IKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILLG------K  208 (296)
T ss_pred             HHHHHHHHHHHC-CeecccCChheEEEcCCCC--EEeccCcccccccCCcceeccCcCcCccccCCHHHHhcC------C
Confidence            999999999995 9999999999999987766  9999999988653322111   12335678999987633      3


Q ss_pred             CCCCcchhhHHH
Q psy320          152 LDPRVDPTSIKM  163 (202)
Q Consensus       152 ~~~~~Diwsl~~  163 (202)
                      ++.++|+||+|+
T Consensus       209 ~~~~~DiwSlG~  220 (296)
T cd05095         209 FTTASDVWAFGV  220 (296)
T ss_pred             ccchhhhhHHHH
Confidence            678999999985

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.93  E-value=5.4e-25  Score=170.18  Aligned_cols=159  Identities=23%  Similarity=0.292  Sum_probs=126.4

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      .+.+|++.++++ +||  ||+++++++.    ++...++||||+.++|.+++.....+.+++..+..++.|++.||.|||
T Consensus        45 ~~~~E~~~l~~l-~h~--~i~~~~~~~~----~~~~~~~v~e~~~~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh  117 (284)
T cd07860          45 TAIREISLLKEL-NHP--NIVKLLDVIH----TENKLYLVFEFLHQDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCH  117 (284)
T ss_pred             HHHHHHHHHHhc-CCC--CCcchhhhcc----cCCcEEEEeeccccCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            456789888888 555  9999999998    567899999999778999887765566999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      +. +++|+||+|+||+++.++.  ++|+|||.+....... ......++..|++||.+...     ..++.++|+||+|+
T Consensus       118 ~~-~i~H~~l~p~nill~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-----~~~~~~~Dv~slG~  189 (284)
T cd07860         118 SH-RVLHRDLKPQNLLINTEGA--IKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGC-----KYYSTAVDIWSLGC  189 (284)
T ss_pred             HC-CeecCCCCHHHEEECCCCC--EEEeeccchhhcccCccccccccccccccCCeEEecC-----CCCCcHHHHHHHHH
Confidence            95 9999999999999998876  9999999987654321 12233567789999987522     22466899999997


Q ss_pred             HHHHHHHHHHHHhcCCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      .      +..+..|..+|..+
T Consensus       190 i------l~~l~tg~~p~~~~  204 (284)
T cd07860         190 I------FAEMVTRRALFPGD  204 (284)
T ss_pred             H------HHHHHHCCCCCCCC
Confidence            3      33555577776543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.92  E-value=2e-24  Score=165.55  Aligned_cols=155  Identities=16%  Similarity=0.144  Sum_probs=120.8

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|++.++++ +||  ||+++++++...  ....++++|||+ +++|.+++.+..  .+++..+..++.|++.||.++
T Consensus        50 ~~~~E~~~l~~l-~h~--~i~~~~~~~~~~--~~~~~~~v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~l~~~l~~l  122 (265)
T cd06652          50 ALECEIQLLKNL-LHE--RIVQYYGCLRDP--MERTLSIFMEHMPGGSIKDQLKSYG--ALTENVTRKYTRQILEGVSYL  122 (265)
T ss_pred             HHHHHHHHHHhc-CCC--CeeeEEeEeccC--CCceEEEEEEecCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHH
Confidence            445688888888 555  999999988632  135788999999 899999987653  488999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc----CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH----DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~----~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      |+. +++|+||+|+||+++.++.  ++|+|||.+.......    ......++..|++||.+..      ..++.++|+|
T Consensus       123 H~~-~i~H~dl~p~nil~~~~~~--~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~Dv~  193 (265)
T cd06652         123 HSN-MIVHRDIKGANILRDSVGN--VKLGDFGASKRLQTICLSGTGMKSVTGTPYWMSPEVISG------EGYGRKADIW  193 (265)
T ss_pred             HhC-CEecCCCCHHHEEecCCCC--EEECcCccccccccccccccccccCCCCccccChhhhcC------CCCCcchhHH
Confidence            995 9999999999999988776  9999999988653211    1223457788999999873      3367799999


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCC
Q psy320          160 SIKMYTTFCEILEQCRLNHQDF  181 (202)
Q Consensus       160 sl~~~~~~~~~~~~~~~~~~~~  181 (202)
                      |+|+..+      .+..|.++|
T Consensus       194 slG~il~------el~~g~~p~  209 (265)
T cd06652         194 SVGCTVV------EMLTEKPPW  209 (265)
T ss_pred             HHHHHHH------HHhhCCCCC
Confidence            9986322      333466555

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.92  E-value=1e-24  Score=167.16  Aligned_cols=155  Identities=20%  Similarity=0.234  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK--FQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~--~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +.+|+++++.+ +||  ||+++++++.    .....++|+||+ +++|.+++....  ...+++..+..++.|++.||.|
T Consensus        49 ~~~e~~~l~~l-~h~--~i~~~~~~~~----~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~  121 (267)
T cd08228          49 CVKEIDLLKQL-NHP--NVIKYLDSFI----EDNELNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEH  121 (267)
T ss_pred             HHHHHHHHHhC-CCc--ceeeeeeeEE----ECCeEEEEEEecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHH
Confidence            45688888888 455  9999999998    456899999999 889998886432  2348899999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC-CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD-QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~-~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      ||++ |++|+||+|+||+++.++.  ++++|||.+........ .....++..|+|||.+..      ..++.++|+||+
T Consensus       122 LH~~-~i~H~dl~~~nil~~~~~~--~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~------~~~~~~~Di~sl  192 (267)
T cd08228         122 MHSR-RVMHRDIKPANVFITATGV--VKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHE------NGYNFKSDIWSL  192 (267)
T ss_pred             HhhC-CeeCCCCCHHHEEEcCCCC--EEECccccceeccchhHHHhcCCCCccccChhhhcc------CCCCchhhHHHH
Confidence            9996 9999999999999988776  99999999887643221 123467788999999873      336778999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCC
Q psy320          162 KMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      |+..+      .+..|..++.
T Consensus       193 G~~l~------el~~g~~p~~  207 (267)
T cd08228         193 GCLLY------EMAALQSPFY  207 (267)
T ss_pred             HHHHH------HHhcCCCCCc
Confidence            86322      4444666654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.92  E-value=9.9e-25  Score=168.56  Aligned_cols=150  Identities=16%  Similarity=0.205  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+++++++ +||  ||+++++.|.    .....++||||+ +++|..+      ..+++..+..++.|++.||.|+
T Consensus        45 ~~~~E~~~l~~l-~h~--~iv~~~~~~~----~~~~~~lv~e~~~~~~l~~~------~~~~~~~~~~~~~qi~~~l~~l  111 (279)
T cd06619          45 QIMSELEILYKC-DSP--YIIGFYGAFF----VENRISICTEFMDGGSLDVY------RKIPEHVLGRIAVAVVKGLTYL  111 (279)
T ss_pred             HHHHHHHHHHhC-CCC--CeeeEEEEEE----ECCEEEEEEecCCCCChHHh------hcCCHHHHHHHHHHHHHHHHHH
Confidence            345688888777 555  9999999998    456889999999 8888643      2378899999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |+. |++|+||||+||+++.++.  ++|+|||++...... ......++..|++||.+..      ..++.++|+||+|+
T Consensus       112 H~~-~i~H~dlkp~Nill~~~~~--~~l~dfg~~~~~~~~-~~~~~~~~~~y~aPE~~~~------~~~~~~~DvwslG~  181 (279)
T cd06619         112 WSL-KILHRDVKPSNMLVNTRGQ--VKLCDFGVSTQLVNS-IAKTYVGTNAYMAPERISG------EQYGIHSDVWSLGI  181 (279)
T ss_pred             HHC-CEeeCCCCHHHEEECCCCC--EEEeeCCcceecccc-cccCCCCChhhcCceeecC------CCCCCcchHHHHHH
Confidence            995 9999999999999998876  999999999765422 2234578889999999873      33677999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~  183 (202)
                      ..+      .+..|..+|..
T Consensus       182 ~l~------~l~~g~~pf~~  195 (279)
T cd06619         182 SFM------ELALGRFPYPQ  195 (279)
T ss_pred             HHH------HHHhCCCCchh
Confidence            322      34447766643

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.92  E-value=2.4e-24  Score=164.95  Aligned_cols=156  Identities=21%  Similarity=0.222  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK--FQPAPLVVAKIIVNQILEGLN   81 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~--~~~~~~~~~~~~~~qi~~~l~   81 (202)
                      ...+|+++++++ +|+  ||+++++.+.    .....++||||+ +++|.+++....  ...+++..++.++.|++.|+.
T Consensus        48 ~~~~ei~~l~~~-~~~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~  120 (267)
T cd08224          48 DCLKEIDLLKQL-DHP--NVIKYLASFI----ENNELNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALE  120 (267)
T ss_pred             HHHHHHHHHHhC-CCC--Ceeeeeeeee----cCCeEEEEEecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHH
Confidence            345688888888 555  9999999998    456899999999 899999986532  345899999999999999999


Q ss_pred             HHHhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           82 HLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        82 ~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      |||+. |++|+||+|+||+++.++.  ++++|||.+....... ......++..|.+||.+..      ..++.++|+||
T Consensus       121 ~lh~~-~i~h~dl~p~nil~~~~~~--~~l~d~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~------~~~~~~~Di~s  191 (267)
T cd08224         121 HMHSK-RIMHRDIKPANVFITATGV--VKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHE------NGYNFKSDIWS  191 (267)
T ss_pred             HHHhC-CEecCCcChhhEEECCCCc--EEEeccceeeeccCCCcccceecCCccccCHHHhcc------CCCCchhcHHH
Confidence            99995 9999999999999988776  9999999987654322 2223467888999999873      33677999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCC
Q psy320          161 IKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       161 l~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +|+..+      .+..|..++.
T Consensus       192 lG~il~------~l~~g~~p~~  207 (267)
T cd08224         192 LGCLLY------EMAALQSPFY  207 (267)
T ss_pred             HHHHHH------HHHHCCCCcc
Confidence            986332      4444666654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>KOG0696|consensus

Probab=99.92  E-value=3.5e-26  Score=177.99  Aligned_cols=143  Identities=16%  Similarity=0.134  Sum_probs=122.9

Q ss_pred             ccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCcee
Q psy320           22 DKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIF  100 (202)
Q Consensus        22 ~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil  100 (202)
                      |++++++..|+    +-+.+|+||||+ ||+|--.+...  ++|.++.+..++.+|+.||-+||++ ||+.||||.+|+|
T Consensus       410 pFL~qlHScFQ----TmDRLyFVMEyvnGGDLMyhiQQ~--GkFKEp~AvFYAaEiaigLFFLh~k-gIiYRDLKLDNvm  482 (683)
T KOG0696|consen  410 PFLVQLHSCFQ----TMDRLYFVMEYVNGGDLMYHIQQV--GKFKEPVAVFYAAEIAIGLFFLHSK-GIIYRDLKLDNVM  482 (683)
T ss_pred             chHHHHHHHhh----hhhheeeEEEEecCchhhhHHHHh--cccCCchhhhhhHHHHHHhhhhhcC-CeeeeeccccceE
Confidence            49999999999    678999999999 99998877776  4599999999999999999999998 9999999999999


Q ss_pred             eecCCcceeEEeecccccccccc-cCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHhcCC
Q psy320          101 FKADHVYIMTLINIQQATTHQEC-HDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLNHQ  179 (202)
Q Consensus       101 ~~~~~~~~~~l~Dfg~a~~~~~~-~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~~~~  179 (202)
                      ++.++.  +||+|||.++..... .+-...+||+-|+|||++.+.+      |+.++|+||+|++.+      .+++|++
T Consensus       483 Ld~eGH--iKi~DFGmcKEni~~~~TTkTFCGTPdYiAPEIi~YqP------YgksvDWWa~GVLLy------EmlaGQp  548 (683)
T KOG0696|consen  483 LDSEGH--IKIADFGMCKENIFDGVTTKTFCGTPDYIAPEIIAYQP------YGKSVDWWAFGVLLY------EMLAGQP  548 (683)
T ss_pred             eccCCc--eEeeecccccccccCCcceeeecCCCcccccceEEecc------cccchhHHHHHHHHH------HHHcCCC
Confidence            999998  999999999875433 3444689999999999999666      889999999987433      5666777


Q ss_pred             CCCCCC
Q psy320          180 DFRPDP  185 (202)
Q Consensus       180 ~~~~~~  185 (202)
                      ||.-+.
T Consensus       549 PFdGeD  554 (683)
T KOG0696|consen  549 PFDGED  554 (683)
T ss_pred             CCCCCC
Confidence            776443

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.92  E-value=1.9e-24  Score=164.60  Aligned_cols=140  Identities=18%  Similarity=0.207  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+..++.+ +||  ||+++++++..     ...++||||+ +++|.+++.......+++..+..++.|++.|+.|+
T Consensus        45 ~~~~e~~~l~~~-~~~--~i~~~~~~~~~-----~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~al~~l  116 (254)
T cd05083          45 AFLEETAVMTKL-HHK--NLVRLLGVILH-----NGLYIVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYL  116 (254)
T ss_pred             HHHHHHHHHHhC-CCC--CcCeEEEEEcC-----CCcEEEEECCCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHH
Confidence            456788888887 455  99999999873     2468999999 89999999876655689999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |+. |++|+||+|+||+++.++.  ++|+|||.+......  ......+..|++||.+..      ..++.++|+||+|+
T Consensus       117 H~~-~~~H~dl~p~nili~~~~~--~kl~Dfg~~~~~~~~--~~~~~~~~~y~~pe~~~~------~~~~~~~Dv~slG~  185 (254)
T cd05083         117 ESK-KLVHRDLAARNILVSEDGV--AKVSDFGLARVGSMG--VDNSKLPVKWTAPEALKH------KKFSSKSDVWSYGV  185 (254)
T ss_pred             HhC-CeeccccCcceEEEcCCCc--EEECCCccceecccc--CCCCCCCceecCHHHhcc------CCcCchhhHHHHHH
Confidence            995 9999999999999988776  999999998764321  112234567999998863      33677999999985

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.92  E-value=2e-24  Score=171.02  Aligned_cols=144  Identities=14%  Similarity=0.157  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC--------------CCCCCHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK--------------FQPAPLVVA   69 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~--------------~~~~~~~~~   69 (202)
                      .+.+|+++++++.+||  ||++++++|.    .....++++||+ +++|.+++.+..              ...++...+
T Consensus        63 ~~~~E~~~l~~l~~h~--~iv~~~~~~~----~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~  136 (334)
T cd05100          63 DLVSEMEMMKMIGKHK--NIINLLGACT----QDGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDL  136 (334)
T ss_pred             HHHHHHHHHHhhcCCC--CeeeeeEEEc----cCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHH
Confidence            3457888888885566  9999999998    456899999999 899999987632              124777889


Q ss_pred             HHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC---CCCCCCccchhhHHHHhhhh
Q psy320           70 KIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ---QSSSKTKSKIFCEILEQCRL  146 (202)
Q Consensus        70 ~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~---~~~~~~~~~~ape~~~~~~~  146 (202)
                      ..++.|++.||.|||+. |++|+||||+||+++.++.  ++|+|||.++........   ....++..|++||.+...  
T Consensus       137 ~~~~~qi~~al~~LH~~-givH~dlkp~Nill~~~~~--~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~--  211 (334)
T cd05100         137 VSCAYQVARGMEYLASQ-KCIHRDLAARNVLVTEDNV--MKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALFDR--  211 (334)
T ss_pred             HHHHHHHHHHHHHHHHC-CeeccccccceEEEcCCCc--EEECCcccceecccccccccccCCCcCceEcCHHHhccC--
Confidence            99999999999999996 9999999999999988776  999999998865432111   112334579999998733  


Q ss_pred             ccCCCCCCCcchhhHHH
Q psy320          147 NQDFRLDPRVDPTSIKM  163 (202)
Q Consensus       147 ~~~~~~~~~~Diwsl~~  163 (202)
                          .++.++|+||+|+
T Consensus       212 ----~~~~~~Di~slG~  224 (334)
T cd05100         212 ----VYTHQSDVWSFGV  224 (334)
T ss_pred             ----CcCchhhhHHHHH
Confidence                3677999999985

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.92  E-value=1.8e-24  Score=166.96  Aligned_cols=140  Identities=16%  Similarity=0.154  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+..++.+ +|  +||+++++++.     ....+++++|+ +++|.+++.... +.+++..+..++.|++.||.|||
T Consensus        56 ~~~e~~~l~~~-~~--~~i~~~~~~~~-----~~~~~l~~~~~~~g~l~~~l~~~~-~~~~~~~~~~~~~qi~~~L~~lH  126 (279)
T cd05109          56 ILDEAYVMAGV-GS--PYVCRLLGICL-----TSTVQLVTQLMPYGCLLDYVRENK-DRIGSQDLLNWCVQIAKGMSYLE  126 (279)
T ss_pred             HHHHHHHHHhc-CC--CCCceEEEEEc-----CCCcEEEEEcCCCCCHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHHH
Confidence            34566666666 44  49999999987     23577999999 899999987643 45999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC---CCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ---SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~---~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      ++ +++|+||||+||+++.++.  ++|+|||.++.........   ...++..|++||....      ..++.++|+||+
T Consensus       127 ~~-~iiH~dlkp~Nil~~~~~~--~kL~dfG~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~------~~~~~~~Di~sl  197 (279)
T cd05109         127 EV-RLVHRDLAARNVLVKSPNH--VKITDFGLARLLDIDETEYHADGGKVPIKWMALESILH------RRFTHQSDVWSY  197 (279)
T ss_pred             HC-CeeccccccceEEEcCCCc--EEECCCCceeecccccceeecCCCccchhhCCHHHhcc------CCCCchhHHHHH
Confidence            96 9999999999999987776  9999999998764322111   1234567999999873      337789999999


Q ss_pred             HH
Q psy320          162 KM  163 (202)
Q Consensus       162 ~~  163 (202)
                      |+
T Consensus       198 G~  199 (279)
T cd05109         198 GV  199 (279)
T ss_pred             HH
Confidence            86

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.92  E-value=1.7e-24  Score=165.54  Aligned_cols=142  Identities=13%  Similarity=0.112  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+..++.+ +|  |||+++++++..   .+...++|+||+ +++|.+++.+.. ...+...+..++.|++.|+.|||
T Consensus        43 ~~~e~~~l~~l-~h--~~iv~~~~~~~~---~~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~lH  115 (262)
T cd05058          43 FLKEGIIMKDF-SH--PNVLSLLGICLP---SEGSPLVVLPYMKHGDLRNFIRSET-HNPTVKDLIGFGLQVAKGMEYLA  115 (262)
T ss_pred             HHHHHHHHccC-CC--CCcceEEEEeec---CCCCcEEEEecCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHH
Confidence            34566666666 44  499999997763   244688999999 899999987643 34677888899999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccC-----CCCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD-----QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~-----~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      +. +++|+||||+||+++.++.  ++|+|||.++.......     .....++..|+|||.+..      ..++.++|+|
T Consensus       116 ~~-~i~H~dlk~~nili~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~Di~  186 (262)
T cd05058         116 SK-KFVHRDLAARNCMLDESFT--VKVADFGLARDIYDKEYYSVHNHTGAKLPVKWMALESLQT------QKFTTKSDVW  186 (262)
T ss_pred             hC-CccccccCcceEEEcCCCc--EEECCccccccccCCcceeecccccCcCCccccChhHhcc------CccchHHHHH
Confidence            96 9999999999999988776  99999999876532111     112345667999998873      3367799999


Q ss_pred             hHHH
Q psy320          160 SIKM  163 (202)
Q Consensus       160 sl~~  163 (202)
                      |+|+
T Consensus       187 slG~  190 (262)
T cd05058         187 SFGV  190 (262)
T ss_pred             HHHH
Confidence            9986

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.92  E-value=2.1e-24  Score=167.03  Aligned_cols=156  Identities=18%  Similarity=0.272  Sum_probs=124.6

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+++++.+ +||  ||+++++.+.    .....++||||+ +++|.+++.+.  +.+++..+..++.+++.++.||
T Consensus        49 ~~~~E~~~l~~l-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~~i~~~l~~L  119 (284)
T cd06620          49 QILRELQIMHEC-RSP--YIVSFYGAFL----NENNICMCMEFMDCGSLDRIYKKG--GPIPVEILGKIAVAVVEGLTYL  119 (284)
T ss_pred             HHHHHHHHHHHc-CCC--CcceEeeeEe----cCCEEEEEEecCCCCCHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHH
Confidence            456788888888 455  9999999998    467999999999 89999988765  3489999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |+..+++|+||+|+||+++.++.  ++|+|||++....... .....++..|++||.+...      .++.++|+||+|+
T Consensus       120 H~~~~i~H~dl~p~nil~~~~~~--~~l~d~gl~~~~~~~~-~~~~~~~~~~~aPE~~~~~------~~~~~~Di~slG~  190 (284)
T cd06620         120 YNVHRIMHRDIKPSNILVNSRGQ--IKLCDFGVSGELINSI-ADTFVGTSTYMSPERIQGG------KYTVKSDVWSLGI  190 (284)
T ss_pred             HHhcCeeccCCCHHHEEECCCCc--EEEccCCcccchhhhc-cCccccCcccCCHHHHccC------CCCccchHHHHHH
Confidence            97458999999999999988776  9999999987653222 2234688899999998633      3677999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      .      +..+..|..+|...
T Consensus       191 ~------l~~l~tg~~p~~~~  205 (284)
T cd06620         191 S------IIELALGKFPFAFS  205 (284)
T ss_pred             H------HHHHHhCCCCCccc
Confidence            3      22444577777643

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.92  E-value=1.7e-24  Score=168.58  Aligned_cols=143  Identities=14%  Similarity=0.198  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCC----------CCCCHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKF----------QPAPLVVAKIIV   73 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~----------~~~~~~~~~~~~   73 (202)
                      .+.+|++.++++ +|+  ||+++++++.    .....++||||+ +++|.+++.....          ..++...++.++
T Consensus        63 ~~~~ei~~l~~l-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~  135 (295)
T cd05097          63 DFLKEIKIMSRL-KNP--NIIRLLGVCV----SDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMA  135 (295)
T ss_pred             HHHHHHHHHHhC-CCC--CcCeEEEEEc----CCCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHH
Confidence            355788888888 455  9999999998    566899999999 8999999865321          136788899999


Q ss_pred             HHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC---CCCCCccchhhHHHHhhhhccCC
Q psy320           74 NQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ---SSSKTKSKIFCEILEQCRLNQDF  150 (202)
Q Consensus        74 ~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~---~~~~~~~~~ape~~~~~~~~~~~  150 (202)
                      .|++.||.|||+. |++|+||||+||+++.++.  ++|+|||.+..........   ...++..|++||.+..      .
T Consensus       136 ~~i~~al~~lH~~-~i~H~dlkp~Nill~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~  206 (295)
T cd05097         136 VQIASGMKYLASL-NFVHRDLATRNCLVGNHYT--IKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILL------G  206 (295)
T ss_pred             HHHHHHHHHHHhc-CeeccccChhhEEEcCCCc--EEecccccccccccCcceeccCcCcCceeecChhhhcc------C
Confidence            9999999999996 9999999999999987766  9999999987653221111   1234568999998873      3


Q ss_pred             CCCCCcchhhHHH
Q psy320          151 RLDPRVDPTSIKM  163 (202)
Q Consensus       151 ~~~~~~Diwsl~~  163 (202)
                      .++.++|+||+|+
T Consensus       207 ~~~~~~DvwSlG~  219 (295)
T cd05097         207 KFTTASDVWAFGV  219 (295)
T ss_pred             CcCchhhHHHHHH
Confidence            3678999999985

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.92  E-value=1e-24  Score=170.10  Aligned_cols=153  Identities=14%  Similarity=0.206  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+..++.+ +||  ||+++++.|.    .+...|+|+||+ +++|.+++..   +.+++..++.++.|++.||.+|
T Consensus        64 ~~~~e~~~l~~l-~hp--~i~~~~~~~~----~~~~~~iv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~qi~~~L~~L  133 (297)
T cd06659          64 LLFNEVVIMRDY-QHQ--NVVEMYKSYL----VGEELWVLMEFLQGGALTDIVSQ---TRLNEEQIATVCESVLQALCYL  133 (297)
T ss_pred             HHHHHHHHHHhC-CCC--chhhhhhhee----eCCeEEEEEecCCCCCHHHHHhh---cCCCHHHHHHHHHHHHHHHHHH
Confidence            345677777777 455  9999999998    466899999999 8999987755   3489999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC-CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD-QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~-~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |+. |++|+||+|+||+++.++.  ++|+|||.+........ .....++..|++||.+...      .++.++|+||+|
T Consensus       134 H~~-~ivH~dl~p~Nill~~~~~--~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~------~~~~~~Dv~slG  204 (297)
T cd06659         134 HSQ-GVIHRDIKSDSILLTLDGR--VKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRT------PYGTEVDIWSLG  204 (297)
T ss_pred             HhC-CeecCCCCHHHeEEccCCc--EEEeechhHhhcccccccccceecCccccCHHHHccC------CCCchhhHHHHH
Confidence            996 9999999999999988876  99999999876543221 2235678899999998733      367799999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +..      ..+..|.++|.
T Consensus       205 ~il------~el~~g~~p~~  218 (297)
T cd06659         205 IMV------IEMVDGEPPYF  218 (297)
T ss_pred             HHH------HHHHhCCCCCC
Confidence            632      24445776664

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.92  E-value=1e-24  Score=169.75  Aligned_cols=153  Identities=15%  Similarity=0.220  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+..++.+ +|+  ||+++++.+.    .+...|+||||+ +++|.+++..   +.+++..+..++.|++.||.||
T Consensus        65 ~~~~e~~~l~~l-~h~--~ii~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~---~~l~~~~~~~~~~qi~~~l~~L  134 (292)
T cd06658          65 LLFNEVVIMRDY-HHE--NVVDMYNSYL----VGDELWVVMEFLEGGALTDIVTH---TRMNEEQIATVCLSVLRALSYL  134 (292)
T ss_pred             HHHHHHHHHHhC-CCC--cHHHHHHhee----cCCeEEEEEeCCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHH
Confidence            345677777777 455  9999999998    567899999999 8899988754   3489999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC-CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD-QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~-~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |+. |++|+||+|+||+++.++.  ++|+|||.+........ .....++..|+|||.+..      ..++.++|+||+|
T Consensus       135 H~~-~ivH~dlkp~Nill~~~~~--~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~Dv~slG  205 (292)
T cd06658         135 HNQ-GVIHRDIKSDSILLTSDGR--IKLSDFGFCAQVSKEVPKRKSLVGTPYWMAPEVISR------LPYGTEVDIWSLG  205 (292)
T ss_pred             HHC-CEeecCCCHHHEEEcCCCC--EEEccCcchhhcccccccCceeecCccccCHHHHcc------CCCCchhhHHHHH
Confidence            996 9999999999999988776  99999999876532221 123467889999999863      3367799999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +..+      .+..|..+|.
T Consensus       206 vil~------el~~g~~p~~  219 (292)
T cd06658         206 IMVI------EMIDGEPPYF  219 (292)
T ss_pred             HHHH------HHHhCCCCCC
Confidence            6322      4445766664

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.92  E-value=2.4e-24  Score=167.13  Aligned_cols=157  Identities=18%  Similarity=0.179  Sum_probs=124.2

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++++.+|+  ||+.+++.|.    .+...|+|+||+ +++|.+++...  +++++..+..++.|++.||.||
T Consensus        50 ~~~~e~~~l~~l~~~~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~al~~l  121 (290)
T cd05613          50 HTRTERQVLEHIRQSP--FLVTLHYAFQ----TDTKLHLILDYINGGELFTHLSQR--ERFKEQEVQIYSGEIVLALEHL  121 (290)
T ss_pred             HHHHHHHHHHhcccCC--ChhceeeEee----cCCeEEEEEecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHH
Confidence            3456888888886566  9999999998    466899999999 89999998765  3589999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC--CCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ--QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~--~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      |+. |++|+||+|+||+++.++.  ++|+|||.+.........  ....++..|++||.+....    ..++.++|+||+
T Consensus       122 H~~-~i~H~dl~p~nil~~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~----~~~~~~~Dv~sl  194 (290)
T cd05613         122 HKL-GIIYRDIKLENILLDSNGH--VVLTDFGLSKEFHEDEVERAYSFCGTIEYMAPDIVRGGD----GGHDKAVDWWSM  194 (290)
T ss_pred             HhC-CeeccCCCHHHeEECCCCC--EEEeeCccceecccccccccccccCCcccCChhhccCCC----CCCCccccHHHH
Confidence            996 9999999999999998776  999999998775432211  1345788899999986321    234668999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCC
Q psy320          162 KMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      |+.      +..+..|..++.
T Consensus       195 G~~------l~~ll~g~~p~~  209 (290)
T cd05613         195 GVL------MYELLTGASPFT  209 (290)
T ss_pred             HHH------HHHHhcCCCCCC
Confidence            863      224445776664

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.92  E-value=9.5e-25  Score=172.85  Aligned_cols=160  Identities=19%  Similarity=0.235  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ...+|+.+++++ +||  ||++++++|..........++|+||++++|.+++...  +.+++..+..++.|++.||.|||
T Consensus        50 ~~~~e~~~l~~l-~h~--~iv~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~--~~~~~~~~~~i~~qi~~aL~~LH  124 (334)
T cd07855          50 RTLRELKILRHF-KHD--NIIAIRDILRPPGADFKDVYVVMDLMESDLHHIIHSD--QPLTEEHIRYFLYQLLRGLKYIH  124 (334)
T ss_pred             HHHHHHHHHHhc-CCC--CccCHHHhccccCCCCceEEEEEehhhhhHHHHhccC--CCCCHHHHHHHHHHHHHHHHHHH
Confidence            345688888888 455  9999999987655456789999999988999888654  34999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC-----CCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ-----QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~-----~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      +. |++|+||||+||+++.++.  ++|+|||.+.........     ....++..|++||.+...     ..++.++|+|
T Consensus       125 ~~-~ivH~dlkp~Nil~~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~-----~~~~~~~Di~  196 (334)
T cd07855         125 SA-NVIHRDLKPSNLLVNEDCE--LRIGDFGMARGLSSSPTEHKYFMTEYVATRWYRAPELLLSL-----PEYTTAIDMW  196 (334)
T ss_pred             HC-CeecCCCCHHHEEEcCCCc--EEecccccceeecccCcCCCcccccccccccccChHHhcCC-----cccccccchH
Confidence            95 9999999999999998876  999999999876432211     123678889999998632     2367799999


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCCC
Q psy320          160 SIKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       160 sl~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      |+|+.      +..+..|.++|..
T Consensus       197 slG~~------l~el~~g~~pf~~  214 (334)
T cd07855         197 SVGCI------FAEMLGRRQLFPG  214 (334)
T ss_pred             HHHHH------HHHHHcCCCccCC
Confidence            99863      2244557777744

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.92  E-value=2.6e-24  Score=163.74  Aligned_cols=143  Identities=16%  Similarity=0.200  Sum_probs=117.6

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|++.++.+ +|+  ||+++++++.    .....+++|||+ +++|.+++.......+++..+..++.|++.|+.+|
T Consensus        47 ~~~~e~~~l~~l-~~~--~i~~~~~~~~----~~~~~~~i~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~l  119 (258)
T smart00219       47 EFLREARIMRKL-DHP--NIVKLLGVCT----EEEPLMIVMEYMEGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYL  119 (258)
T ss_pred             HHHHHHHHHHhc-CCC--chheEEEEEc----CCCeeEEEEeccCCCCHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHH
Confidence            455688888888 565  9999999998    456899999999 89999998765433389999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC--CCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ--SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~--~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      |+. +++|+||+|+||+++.++.  ++++|||.+..........  ...++..|++||....      ..++.++|+||+
T Consensus       120 h~~-~~~h~dl~~~nil~~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~------~~~~~~~Di~sl  190 (258)
T smart00219      120 ESK-NFIHRDLAARNCLVGENLV--VKISDFGLSRDLYDDDYYKKKGGKLPIRWMAPESLKD------GKFTSKSDVWSF  190 (258)
T ss_pred             hcC-CeeecccccceEEEccCCe--EEEcccCCceecccccccccccCCCcccccChHHhcc------CCCCcchhHHHH
Confidence            996 9999999999999998876  9999999998765432211  1235678999998852      336779999999


Q ss_pred             HH
Q psy320          162 KM  163 (202)
Q Consensus       162 ~~  163 (202)
                      |+
T Consensus       191 G~  192 (258)
T smart00219      191 GV  192 (258)
T ss_pred             HH
Confidence            85

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.92  E-value=2.2e-24  Score=165.23  Aligned_cols=155  Identities=19%  Similarity=0.221  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK--FQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~--~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +.+|+++++.+ +|+  ||++++++|.    .+...+++|||+ +++|.+++....  ...+++..++.++.|++.|+.|
T Consensus        49 ~~~e~~~l~~~-~h~--~i~~~~~~~~----~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~  121 (267)
T cd08229          49 CIKEIDLLKQL-NHP--NVIKYYASFI----EDNELNIVLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEH  121 (267)
T ss_pred             HHHHHHHHHHc-cCC--chhhhhheeE----eCCeEEEEEEecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHH
Confidence            45677777777 455  9999999998    466899999999 899999886432  3458999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC-CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD-QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~-~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      ||+. |++|+||+|+||+++.++.  ++++|||.+........ .....++..|++||.+..      ..++.++|+||+
T Consensus       122 LH~~-~i~H~dl~p~nili~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~~~ape~~~~------~~~~~~~Dv~sl  192 (267)
T cd08229         122 MHSR-RVMHRDIKPANVFITATGV--VKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHE------NGYNFKSDIWSL  192 (267)
T ss_pred             HHHC-CeecCCCCHHHEEEcCCCC--EEECcchhhhccccCCcccccccCCcCccCHHHhcC------CCccchhhHHHH
Confidence            9996 9999999999999988776  99999999876543222 123467889999999863      336778999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCC
Q psy320          162 KMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      |+..      ..+..|..++.
T Consensus       193 G~il------~~l~~g~~p~~  207 (267)
T cd08229         193 GCLL------YEMAALQSPFY  207 (267)
T ss_pred             HHHH------HHHHhCCCCcc
Confidence            8632      24455666654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.92  E-value=3.7e-24  Score=165.67  Aligned_cols=166  Identities=16%  Similarity=0.230  Sum_probs=126.0

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEec-CCceEEEEEEccc-cccHHHHHHHc--CCCCCCHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTG-INGTHVCTVTEIM-AECLCNYMIRQ--KFQPAPLVVAKIIVNQILEGL   80 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~-~~~~~~~lv~e~~-~~sL~~~~~~~--~~~~~~~~~~~~~~~qi~~~l   80 (202)
                      ...+|+.+++.+++||  ||+++++++.... ..+...++||||+ +++|.+++...  ....+++..+..++.|++.|+
T Consensus        60 ~~~~e~~~l~~l~~h~--~i~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l  137 (286)
T cd06638          60 EIEAEYNILKALSDHP--NVVKFYGMYYKKDVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGL  137 (286)
T ss_pred             HHHHHHHHHHHHhcCC--CeeeeeeeeeecccCCCCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHH
Confidence            3456888888886666  9999999885422 2456899999999 99999887532  234589999999999999999


Q ss_pred             HHHHhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           81 NHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        81 ~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      .|||+. +++|+||+|+||+++.++.  ++|+|||.+....... ......++..|+|||.+.... .....++.++|+|
T Consensus       138 ~~lH~~-~i~H~dlkp~nili~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-~~~~~~~~~~Dv~  213 (286)
T cd06638         138 QHLHVN-KTIHRDVKGNNILLTTEGG--VKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQ-QLDSTYDARCDVW  213 (286)
T ss_pred             HHHHhC-CccccCCCHHhEEECCCCC--EEEccCCceeecccCCCccccccCCCcccChhhhchhh-hccccccchhhhh
Confidence            999996 9999999999999998776  9999999988764322 222346888999999986322 1123467799999


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCC
Q psy320          160 SIKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       160 sl~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      |+|+..+      .+..|.+++.
T Consensus       214 slGvi~~------el~~g~~p~~  230 (286)
T cd06638         214 SLGITAI------ELGDGDPPLA  230 (286)
T ss_pred             hHHHHHH------HHhcCCCCCC
Confidence            9986322      3444655543

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.92  E-value=2.1e-24  Score=164.83  Aligned_cols=144  Identities=17%  Similarity=0.181  Sum_probs=117.5

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ....+|+..++++ +|+  ||+++++++.    .....++||||+ +++|.+++.......++...+..++.|++.|+.|
T Consensus        46 ~~~~~e~~~l~~l-~h~--~i~~~~~~~~----~~~~~~~v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~  118 (261)
T cd05034          46 EAFLQEAQIMKKL-RHD--KLVQLYAVCS----EEEPIYIVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAY  118 (261)
T ss_pred             HHHHHHHHHHhhC-CCC--CEeeeeeeee----cCCceEEEEeccCCCCHHHHHhccccCCCCHHHHHHHHHHHHHHHHH
Confidence            3456788888888 455  9999999988    456899999999 8999999987655569999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC--CCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ--QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~--~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      ||++ |++|+||+|+||+++.++.  ++++|||.+.........  .....+..|++||.+...      .++.++|+||
T Consensus       119 lh~~-~i~h~di~p~nili~~~~~--~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~------~~~~~~Di~s  189 (261)
T cd05034         119 LESR-NYIHRDLAARNILVGENLV--CKIADFGLARLIEDDEYTAREGAKFPIKWTAPEAANYG------RFTIKSDVWS  189 (261)
T ss_pred             HHhC-CcccCCcchheEEEcCCCC--EEECccccceeccchhhhhhhccCCCccccCHHHhccC------CcCchhHHHH
Confidence            9996 9999999999999998876  999999998776431111  122345679999988733      3677999999


Q ss_pred             HHH
Q psy320          161 IKM  163 (202)
Q Consensus       161 l~~  163 (202)
                      +|+
T Consensus       190 lG~  192 (261)
T cd05034         190 FGI  192 (261)
T ss_pred             HHH
Confidence            985

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.92  E-value=3.1e-24  Score=163.49  Aligned_cols=156  Identities=18%  Similarity=0.201  Sum_probs=123.5

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|++.++++ +||  ||+++.+++.    ...+.++|+||+ +++|.+.+.......+++..+..++.|++.|+.++
T Consensus        45 ~~~~e~~~l~~l-~~~--~i~~~~~~~~----~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l  117 (256)
T cd08218          45 ESRKEVAVLSNM-KHP--NIVQYQESFE----ENGNLYIVMDYCEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHV  117 (256)
T ss_pred             HHHHHHHHHHhC-CCC--CeeeeEeeec----CCCeEEEEEecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHH
Confidence            355678888877 455  9999999998    567999999999 89999998765444589999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC-CCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ-QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~-~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |+. +++|+||+|+||+++.++.  ++++|||.+......... ....++..|++||.+..      ...+.++|+||+|
T Consensus       118 h~~-~i~h~~l~~~nil~~~~~~--~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~------~~~~~~~Dv~slG  188 (256)
T cd08218         118 HDR-KILHRDIKSQNIFLTKDGT--IKLGDFGIARVLNSTVELARTCIGTPYYLSPEICEN------RPYNNKSDIWALG  188 (256)
T ss_pred             HhC-CEecCCCCHHHEEEcCCCC--EEEeeccceeecCcchhhhhhccCCccccCHHHhCC------CCCCCccchhHHH
Confidence            995 9999999999999988776  999999999876432211 23457788999999863      3366799999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +..+      .+..|..++.
T Consensus       189 ~i~~------~l~~g~~~~~  202 (256)
T cd08218         189 CVLY------EMCTLKHAFE  202 (256)
T ss_pred             HHHH------HHHcCCCCcc
Confidence            6332      3444665554

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.92  E-value=1.9e-24  Score=166.38  Aligned_cols=152  Identities=16%  Similarity=0.220  Sum_probs=124.8

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+++++.+ +|+  ||+++.+.+.    .+...|+|+||+ +++|.+++...   ++++..++.++.|++.|+.|||
T Consensus        46 ~~~e~~~l~~l-~h~--~i~~~~~~~~----~~~~~~~v~e~~~~~~L~~~~~~~---~~~~~~~~~~~~ql~~~l~~lh  115 (274)
T cd06609          46 IQQEIQFLSQC-RSP--YITKYYGSFL----KGSKLWIIMEYCGGGSCLDLLKPG---KLDETYIAFILREVLLGLEYLH  115 (274)
T ss_pred             HHHHHHHHHHc-CCC--CeeeeeEEEE----ECCeEEEEEEeeCCCcHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHH
Confidence            45688888888 455  9999999988    457999999999 89999998764   5899999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccc-cCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQEC-HDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~-~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      +. +++|+||+|+||+++.++.  ++++|||.++..... .......++..|++||.+....      ++.++|+||+|+
T Consensus       116 ~~-~i~h~dl~p~ni~i~~~~~--~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~------~~~~sDv~slG~  186 (274)
T cd06609         116 EE-GKIHRDIKAANILLSEEGD--VKLADFGVSGQLTSTMSKRNTFVGTPFWMAPEVIKQSG------YDEKADIWSLGI  186 (274)
T ss_pred             hC-CcccCCCCHHHEEECCCCC--EEEcccccceeecccccccccccCCccccChhhhccCC------CCchhhHHHHHH
Confidence            96 9999999999999998876  999999999877543 2223456778899999998433      778999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~  182 (202)
                      ..+      .+..|.++|.
T Consensus       187 il~------~l~tg~~p~~  199 (274)
T cd06609         187 TAI------ELAKGEPPLS  199 (274)
T ss_pred             HHH------HHHhCCCCcc
Confidence            332      4555777764

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.92  E-value=2.9e-24  Score=163.10  Aligned_cols=142  Identities=13%  Similarity=0.165  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|++.++.+ +||  ||+++++++.    .....++||||+ +++|.+++.... ..+++..+..++.|++.+|.|+
T Consensus        38 ~~~~e~~~l~~l-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~l  109 (250)
T cd05085          38 KFLSEARILKQY-DHP--NIVKLIGVCT----QRQPIYIVMELVPGGDFLSFLRKKK-DELKTKQLVKFALDAAAGMAYL  109 (250)
T ss_pred             HHHHHHHHHHhC-CCC--CcCeEEEEEe----cCCccEEEEECCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHH
Confidence            355688888877 455  9999999998    456899999999 999999886543 3588999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC--CCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ--SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~--~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      |+. |++|+||+|+||+++.++.  ++|+|||.+..........  ...++..|++||.+...      .++.++|+||+
T Consensus       110 H~~-~~~H~dl~p~nili~~~~~--~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~------~~~~~~Di~sl  180 (250)
T cd05085         110 ESK-NCIHRDLAARNCLVGENNV--LKISDFGMSRQEDDGIYSSSGLKQIPIKWTAPEALNYG------RYSSESDVWSY  180 (250)
T ss_pred             HhC-CeeecccChheEEEcCCCe--EEECCCccceeccccccccCCCCCCcccccCHHHhccC------CCCchhHHHHH
Confidence            996 9999999999999988776  9999999987643221111  12345579999998732      36678999999


Q ss_pred             HH
Q psy320          162 KM  163 (202)
Q Consensus       162 ~~  163 (202)
                      |+
T Consensus       181 G~  182 (250)
T cd05085         181 GI  182 (250)
T ss_pred             HH
Confidence            86

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.92  E-value=2.7e-24  Score=165.57  Aligned_cols=143  Identities=12%  Similarity=0.161  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCC-------CCCHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQ-------PAPLVVAKIIVNQI   76 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~-------~~~~~~~~~~~~qi   76 (202)
                      .+.+|+++++++ +|+  ||+++++++.    .....|+||||+ +++|.+++.....+       .+++..++.++.|+
T Consensus        54 ~~~~E~~~l~~l-~h~--~iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l  126 (275)
T cd05046          54 EFRRELDMFRKL-SHK--NVVRLLGLCR----EAEPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQI  126 (275)
T ss_pred             HHHHHHHHHHhc-CCc--ceeeeEEEEC----CCCcceEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHH
Confidence            456788888888 555  9999999987    466889999999 89999999765411       58999999999999


Q ss_pred             HHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc--CCCCCCCCccchhhHHHHhhhhccCCCCCC
Q psy320           77 LEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH--DQQSSSKTKSKIFCEILEQCRLNQDFRLDP  154 (202)
Q Consensus        77 ~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~--~~~~~~~~~~~~ape~~~~~~~~~~~~~~~  154 (202)
                      +.||.|||+. +++|+||||+||+++.++.  ++++|||.+.......  ......++..|++||.+...      ..+.
T Consensus       127 ~~~l~~LH~~-~i~H~dlkp~Nili~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~------~~~~  197 (275)
T cd05046         127 ALGMDHLSNA-RFVHRDLAARNCLVSSQRE--VKVSLLSLSKDVYNSEYYKLRNALIPLRWLAPEAVQED------DFST  197 (275)
T ss_pred             HHHHHHhhhc-CcccCcCccceEEEeCCCc--EEEcccccccccCcccccccCCceeEEeecChhhhccC------CCCc
Confidence            9999999995 9999999999999998776  9999999987543211  11123455679999988632      3567


Q ss_pred             CcchhhHHH
Q psy320          155 RVDPTSIKM  163 (202)
Q Consensus       155 ~~Diwsl~~  163 (202)
                      ++|+||+|+
T Consensus       198 ~~Di~slG~  206 (275)
T cd05046         198 KSDVWSFGV  206 (275)
T ss_pred             hhhHHHHHH
Confidence            899999985

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.92  E-value=1.8e-24  Score=170.84  Aligned_cols=158  Identities=18%  Similarity=0.206  Sum_probs=119.3

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+.+++.+ +||  ||++++++|.    .+...|+|+||+ +++|.+++.+.....+++..++.++.|++.||.||
T Consensus        45 ~~~~e~~~~~~l-~h~--niv~~~~~~~----~~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~l  117 (328)
T cd08226          45 ALQNEVVLSHFF-RHP--NIMTSWTVFT----TGSWLWVISPFMAYGSANSLLKTYFPEGMSEALIGNILFGALRGLNYL  117 (328)
T ss_pred             HHHHHHHHHHhC-CCC--CcceEeeeEe----cCCceEEEEecccCCCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHH
Confidence            345566666666 455  9999999998    566899999999 88999998876555699999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC--------CCCCCCccchhhHHHHhhhhccCCCCCCC
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ--------QSSSKTKSKIFCEILEQCRLNQDFRLDPR  155 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~--------~~~~~~~~~~ape~~~~~~~~~~~~~~~~  155 (202)
                      |+. |++||||||+||+++.++.  ++++||+.+......+..        ....++..|++||.+....    ..++.+
T Consensus       118 H~~-~ivHrDlkp~Nill~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~----~~~~~~  190 (328)
T cd08226         118 HQN-GYIHRNIKASHILISGDGL--VSLSGLSHLYSLVRNGQKAKVVYDFPQFSTSVLPWLSPELLRQDL----YGYNVK  190 (328)
T ss_pred             HhC-CeecCCCCHHHEEEeCCCc--EEEechHHHhhhhccCccccccccccccccCccCccChhhhcCCC----CCCCch
Confidence            995 9999999999999998776  999999765433221111        1123455799999987422    235779


Q ss_pred             cchhhHHHHHHHHHHHHHHHhcCCCCC
Q psy320          156 VDPTSIKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       156 ~Diwsl~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +|+||+|+..      ..+..|.++|.
T Consensus       191 ~DiwslG~~l------~el~~g~~p~~  211 (328)
T cd08226         191 SDIYSVGITA------CELATGRVPFQ  211 (328)
T ss_pred             hhHHHHHHHH------HHHHhCCCCCC
Confidence            9999998632      23444666664

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>KOG4278|consensus

Probab=99.92  E-value=3.3e-25  Score=180.04  Aligned_cols=165  Identities=18%  Similarity=0.205  Sum_probs=135.5

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ..++.|+.+++.+ +||  |+|+++++|.    ...-+|+|+||| .|+|.+++++.....++.-....++.||.+||.|
T Consensus       308 eEFLkEAAvMKei-kHp--NLVqLLGVCT----~EpPFYIiTEfM~yGNLLdYLRecnr~ev~avvLlyMAtQIsSaMeY  380 (1157)
T KOG4278|consen  308 EEFLKEAAVMKEI-KHP--NLVQLLGVCT----HEPPFYIITEFMCYGNLLDYLRECNRSEVPAVVLLYMATQISSAMEY  380 (1157)
T ss_pred             HHHHHHHHHHHhh-cCc--cHHHHhhhhc----cCCCeEEEEecccCccHHHHHHHhchhhcchhHHHHHHHHHHHHHHH
Confidence            4567889999999 555  9999999999    566899999999 9999999988766668888889999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCC---CCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSS---SKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~---~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      |..+ +++||||...|+|++.+..  +|++|||+++.++... ....   .-...|.|||.+.+..      ++.++|+|
T Consensus       381 LEkk-nFIHRDLAARNCLVgEnhi--VKvADFGLsRlMtgDT-YTAHAGAKFPIKWTAPEsLAyNt------FSiKSDVW  450 (1157)
T KOG4278|consen  381 LEKK-NFIHRDLAARNCLVGENHI--VKVADFGLSRLMTGDT-YTAHAGAKFPIKWTAPESLAYNT------FSIKSDVW  450 (1157)
T ss_pred             HHHh-hhhhhhhhhhhccccccce--EEeeccchhhhhcCCc-eecccCccCcccccCcccccccc------cccchhhH
Confidence            9998 9999999999999998765  9999999999987432 2211   2233689999999665      77899999


Q ss_pred             hHHHHHH--HH-----------------------------------HHHHHHHhcCCCCCCCC
Q psy320          160 SIKMYTT--FC-----------------------------------EILEQCRLNHQDFRPDP  185 (202)
Q Consensus       160 sl~~~~~--~~-----------------------------------~~~~~~~~~~~~~~~~~  185 (202)
                      ++|++.+  .+                                   +++-+|+.+.|..||+.
T Consensus       451 AFGVLLWEIATYGMsPYPGidlSqVY~LLEkgyRM~~PeGCPpkVYeLMraCW~WsPsDRPsF  513 (1157)
T KOG4278|consen  451 AFGVLLWEIATYGMSPYPGIDLSQVYGLLEKGYRMDGPEGCPPKVYELMRACWNWSPSDRPSF  513 (1157)
T ss_pred             HHHHHHHHHHhcCCCCCCCccHHHHHHHHhccccccCCCCCCHHHHHHHHHHhcCCcccCccH
Confidence            9976444  22                                   77778887777777754

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.92  E-value=2.6e-24  Score=165.30  Aligned_cols=146  Identities=14%  Similarity=0.150  Sum_probs=112.6

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecC--CceEEEEEEccc-cccHHHHHHHcC----CCCCCHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGI--NGTHVCTVTEIM-AECLCNYMIRQK----FQPAPLVVAKIIVNQILE   78 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~--~~~~~~lv~e~~-~~sL~~~~~~~~----~~~~~~~~~~~~~~qi~~   78 (202)
                      +.+|++.++.+ +|+  ||+++++.+.....  .....+++|||+ +++|.+++....    ...+++..+..++.|++.
T Consensus        47 ~~~E~~~l~~l-~h~--~iv~~~~~~~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  123 (272)
T cd05075          47 FLSEAVCMKEF-DHP--NVMRLIGVCLQTVESEGYPSPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIAS  123 (272)
T ss_pred             HHHHHHHHHhC-CCC--CcceEEEEEccCCcccCCCCcEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHH
Confidence            45577777777 455  99999998753221  223678999999 899998875321    234889999999999999


Q ss_pred             HHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC---CCCCCCCccchhhHHHHhhhhccCCCCCCC
Q psy320           79 GLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD---QQSSSKTKSKIFCEILEQCRLNQDFRLDPR  155 (202)
Q Consensus        79 ~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~ape~~~~~~~~~~~~~~~~  155 (202)
                      ||.|||+. +++||||||+||+++.++.  ++|+|||.++.......   ......++.|++||....      ..++++
T Consensus       124 ~l~~lH~~-~i~H~dlkp~Nil~~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~------~~~~~~  194 (272)
T cd05075         124 GMEYLSSK-SFIHRDLAARNCMLNENMN--VCVADFGLSKKIYNGDYYRQGRIAKMPVKWIAIESLAD------RVYTTK  194 (272)
T ss_pred             HHHHHHHC-CeeccccchhheEEcCCCC--EEECCCCcccccCcccceecCCcccCCcccCCHHHccC------CCcChH
Confidence            99999996 9999999999999988776  99999999987643221   112345667999999873      337789


Q ss_pred             cchhhHHH
Q psy320          156 VDPTSIKM  163 (202)
Q Consensus       156 ~Diwsl~~  163 (202)
                      +|+||+|+
T Consensus       195 ~Di~slG~  202 (272)
T cd05075         195 SDVWSFGV  202 (272)
T ss_pred             HHHHHHHH
Confidence            99999986

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.92  E-value=2.8e-24  Score=170.03  Aligned_cols=161  Identities=20%  Similarity=0.165  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ...+|+.+++++++||  ||+++++.+..........++++++++++|.+.+...  +++++..++.++.|++.||.|||
T Consensus        47 ~~~~E~~~l~~l~~h~--~iv~~~~~~~~~~~~~~~~~~~~e~~~~~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH  122 (332)
T cd07857          47 RALRELKLLRHFRGHK--NITCLYDMDIVFPGNFNELYLYEELMEADLHQIIRSG--QPLTDAHFQSFIYQILCGLKYIH  122 (332)
T ss_pred             HHHHHHHHHHHhcCCC--ChheeeeeeeeccccCCcEEEEEecccCCHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHH
Confidence            4567888888886566  9999999866432234578899999988999988654  45999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccC-----CCCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD-----QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~-----~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      +. |++|+||||+||+++.++.  ++|+|||.+........     .....++..|++||....     ...++.++|+|
T Consensus       123 ~~-givH~dlkp~Nili~~~~~--~kl~Dfg~a~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-----~~~~~~~~Di~  194 (332)
T cd07857         123 SA-NVLHRDLKPGNLLVNADCE--LKICDFGLARGFSENPGENAGFMTEYVATRWYRAPEIMLS-----FQSYTKAIDVW  194 (332)
T ss_pred             hC-CcccCCCCHHHeEEcCCCC--EEeCcCCCceecccccccccccccCcccCccccCcHHHhC-----CCCCCcHHHHH
Confidence            96 9999999999999998876  99999999986543211     112357888999998762     23467799999


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCCC
Q psy320          160 SIKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       160 sl~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      |+|+..      ..+..|.++|..
T Consensus       195 slGv~l------~~l~~g~~pf~~  212 (332)
T cd07857         195 SVGCIL------AELLGRKPVFKG  212 (332)
T ss_pred             HHHHHH------HHHHhCCcCCCC
Confidence            998632      244457776653

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.92  E-value=2.7e-24  Score=165.21  Aligned_cols=149  Identities=11%  Similarity=0.155  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK--FQPAPLVVAKIIVNQILEGLN   81 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~--~~~~~~~~~~~~~~qi~~~l~   81 (202)
                      .+.+|+..++.+ +||  ||+++++.|.    .....|+||||+ +++|.+++.+..  ....+...++.++.|++.||.
T Consensus        41 ~~~~e~~~~~~l-~h~--~iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~  113 (268)
T cd05086          41 EFLQQGDPYRIL-QHP--NILQCLGQCV----EAIPYLLVFEYCELGDLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVT  113 (268)
T ss_pred             HHHHHHHHHhcc-CCc--chhheEEEec----CCCccEEEEecCCCCcHHHHHHhhhcccccccHHHHHHHHHHHHHHHH
Confidence            455677777767 455  9999999998    566899999999 899999987643  234677788899999999999


Q ss_pred             HHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccc---cCCCCCCCCccchhhHHHHhhhh-ccCCCCCCCcc
Q psy320           82 HLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQEC---HDQQSSSKTKSKIFCEILEQCRL-NQDFRLDPRVD  157 (202)
Q Consensus        82 ~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~---~~~~~~~~~~~~~ape~~~~~~~-~~~~~~~~~~D  157 (202)
                      |||+. +++|+||||+|||++.++.  ++|+|||.+......   .......++..|++||.+..... .....++.++|
T Consensus       114 ~lH~~-~i~H~dikp~nil~~~~~~--~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~D  190 (268)
T cd05086         114 HMHKH-NFLHSDLALRNCFLTSDLT--VKVGDYGIGPSRYKEDYIETEDDKCVPLRWLAPELVGEFHGGLITAEQTKPSN  190 (268)
T ss_pred             HHHHC-CeeccCCccceEEEcCCcc--EEecccccccccCcchhhhcccCCcCcccccCchhcccccCccccCCCCCcch
Confidence            99995 9999999999999988776  999999998643211   11123457788999998853210 01223467899


Q ss_pred             hhhHHH
Q psy320          158 PTSIKM  163 (202)
Q Consensus       158 iwsl~~  163 (202)
                      +||+|+
T Consensus       191 iwslG~  196 (268)
T cd05086         191 VWALGV  196 (268)
T ss_pred             hHHHHH
Confidence            999985

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.92  E-value=3e-24  Score=163.61  Aligned_cols=143  Identities=15%  Similarity=0.252  Sum_probs=115.2

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ..+.+|++.++++ +||  ||+++++++.    .....|+|+||+ +++|.+++.... +.+++..+..++.|++.++.+
T Consensus        44 ~~~~~e~~~l~~l-~~~--~i~~~~~~~~----~~~~~~~v~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~  115 (256)
T cd05112          44 EDFIEEAQVMMKL-SHP--KLVQLYGVCT----ERSPICLVFEFMEHGCLSDYLRAQR-GKFSQETLLGMCLDVCEGMAY  115 (256)
T ss_pred             HHHHHHHHHHHhC-CCC--CeeeEEEEEc----cCCceEEEEEcCCCCcHHHHHHhCc-cCCCHHHHHHHHHHHHHHHHH
Confidence            3466788888888 555  9999999988    456899999999 899999886543 358899999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC--CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD--QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~--~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      ||+. +++|+||+|+||+++.++.  ++|+|||.+........  ......+..|++||.+...      .++.++|+||
T Consensus       116 lH~~-~i~h~dl~p~ni~i~~~~~--~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~aPe~~~~~------~~~~~~Dv~s  186 (256)
T cd05112         116 LESS-NVIHRDLAARNCLVGENQV--VKVSDFGMTRFVLDDQYTSSTGTKFPVKWSSPEVFSFS------KYSSKSDVWS  186 (256)
T ss_pred             HHHC-CccccccccceEEEcCCCe--EEECCCcceeecccCcccccCCCccchhhcCHhHhccC------CcChHHHHHH
Confidence            9995 9999999999999987765  99999999876532211  1122345679999988733      3677899999


Q ss_pred             HHH
Q psy320          161 IKM  163 (202)
Q Consensus       161 l~~  163 (202)
                      +|+
T Consensus       187 lG~  189 (256)
T cd05112         187 FGV  189 (256)
T ss_pred             HHH
Confidence            985

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.92  E-value=2.3e-24  Score=165.54  Aligned_cols=142  Identities=14%  Similarity=0.162  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+..++.+ +||  ||+++.+++.    .+...++||||+ +++|.+++.... +.++...++.++.|++.|+.||
T Consensus        51 ~~~~e~~~l~~l-~h~--ni~~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~~l~~al~~l  122 (269)
T cd05065          51 DFLSEASIMGQF-DHP--NIIHLEGVVT----KSRPVMIITEFMENGALDSFLRQND-GQFTVIQLVGMLRGIAAGMKYL  122 (269)
T ss_pred             HHHHHHHHHHhC-CCc--CcceEEEEEC----CCCceEEEEecCCCCcHHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHH
Confidence            455688888877 455  9999999987    566889999999 889999987643 4589999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC----CC--CCCccchhhHHHHhhhhccCCCCCCCcc
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ----SS--SKTKSKIFCEILEQCRLNQDFRLDPRVD  157 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~----~~--~~~~~~~ape~~~~~~~~~~~~~~~~~D  157 (202)
                      |+. |++|+||+|+||+++.++.  ++++|||.+..........    ..  ..+..|++||.+...      .++.++|
T Consensus       123 H~~-g~~H~dl~p~nili~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~------~~~~~~D  193 (269)
T cd05065         123 SEM-NYVHRDLAARNILVNSNLV--CKVSDFGLSRFLEDDTSDPTYTSSLGGKIPIRWTAPEAIAYR------KFTSASD  193 (269)
T ss_pred             HHC-CEeecccChheEEEcCCCc--EEECCCccccccccCccccccccccCCCcceeecCHhHhccC------cccchhh
Confidence            996 9999999999999987765  9999999987654322111    11  123469999998743      3677999


Q ss_pred             hhhHHH
Q psy320          158 PTSIKM  163 (202)
Q Consensus       158 iwsl~~  163 (202)
                      +||+|+
T Consensus       194 vwslG~  199 (269)
T cd05065         194 VWSYGI  199 (269)
T ss_pred             hhhhHH
Confidence            999985

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>KOG0662|consensus

Probab=99.92  E-value=4e-25  Score=155.07  Aligned_cols=145  Identities=19%  Similarity=0.203  Sum_probs=124.6

Q ss_pred             chHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            3 TNYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         3 ~~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +..+.+|+-+|+.+ +|.  |||+++++..    +.+.+-+|+|||..+|..+..... +-++.+.++.++.|++.|+.+
T Consensus        45 pssalreicllkel-khk--nivrl~dvlh----sdkkltlvfe~cdqdlkkyfdsln-g~~d~~~~rsfmlqllrgl~f  116 (292)
T KOG0662|consen   45 PSSALREICLLKEL-KHK--NIVRLHDVLH----SDKKLTLVFEFCDQDLKKYFDSLN-GDLDPEIVRSFMLQLLRGLGF  116 (292)
T ss_pred             cHHHHHHHHHHHHh-hhc--ceeehhhhhc----cCceeEEeHHHhhHHHHHHHHhcC-CcCCHHHHHHHHHHHHhhhhh
Confidence            34678999999999 555  9999999998    677999999999999999887654 569999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      +|+. +++|||+||.|.+++.++.  +|++|||+++.+.-+- .......|.+|..|.++.+..     -|++..|+||.
T Consensus       117 chsh-nvlhrdlkpqnllin~nge--lkladfglarafgipvrcysaevvtlwyrppdvlfgak-----ly~tsidmwsa  188 (292)
T KOG0662|consen  117 CHSH-NVLHRDLKPQNLLINRNGE--LKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAK-----LYSTSIDMWSA  188 (292)
T ss_pred             hhhh-hhhhccCCcceEEeccCCc--EEecccchhhhcCCceEeeeceeeeeeccCcceeeeee-----hhccchHhhhc
Confidence            9995 9999999999999999887  9999999999875432 333457888999999988543     37889999999


Q ss_pred             HH
Q psy320          162 KM  163 (202)
Q Consensus       162 ~~  163 (202)
                      |+
T Consensus       189 gc  190 (292)
T KOG0662|consen  189 GC  190 (292)
T ss_pred             ch
Confidence            75

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.92  E-value=2.2e-24  Score=167.60  Aligned_cols=159  Identities=18%  Similarity=0.212  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|++.++.+ +|+  ||+++.+.+..    ....|+||||+ +++|..++.+.. ..+++..+..++.|++.++.|||
T Consensus        56 ~~~e~~~l~~l-~h~--~i~~~~~~~~~----~~~~~lv~e~~~~~~l~~~~~~~~-~~l~~~~~~~~~~ql~~~l~~lH  127 (292)
T cd06644          56 YMVEIEILATC-NHP--YIVKLLGAFYW----DGKLWIMIEFCPGGAVDAIMLELD-RGLTEPQIQVICRQMLEALQYLH  127 (292)
T ss_pred             HHHHHHHHHhC-CCC--cEeeeEEEEEe----CCeEEEEEecCCCCcHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHh
Confidence            45577777777 455  99999999984    55899999999 889988776543 45899999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccc-cCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQEC-HDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~-~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      +. |++|+||+|+||+++.++.  ++|+|||.+...... .......++..|++||.+..... ....++.++|+||+|+
T Consensus       128 ~~-~i~H~dlkp~Nili~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-~~~~~~~~~Dv~slG~  203 (292)
T cd06644         128 SM-KIIHRDLKAGNVLLTLDGD--IKLADFGVSAKNVKTLQRRDSFIGTPYWMAPEVVMCETM-KDTPYDYKADIWSLGI  203 (292)
T ss_pred             cC-CeeecCCCcceEEEcCCCC--EEEccCccceeccccccccceecCCccccCceeeccccc-cCCCCCchhhhHhHHH
Confidence            95 9999999999999987776  999999998764332 12223457788999999853321 1234677899999986


Q ss_pred             HHHHHHHHHHHHhcCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~  182 (202)
                      ..+      .+..|.+++.
T Consensus       204 il~------el~~g~~p~~  216 (292)
T cd06644         204 TLI------EMAQIEPPHH  216 (292)
T ss_pred             HHH------HHhcCCCCCc
Confidence            332      3445666653

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.92  E-value=3.4e-24  Score=164.59  Aligned_cols=147  Identities=13%  Similarity=0.158  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecC--CceEEEEEEccc-cccHHHHHHHcC----CCCCCHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGI--NGTHVCTVTEIM-AECLCNYMIRQK----FQPAPLVVAKIIVNQIL   77 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~--~~~~~~lv~e~~-~~sL~~~~~~~~----~~~~~~~~~~~~~~qi~   77 (202)
                      .+.+|++.++.+ +||  ||+++++++.....  .....++++||+ +++|..++....    ...+++..+..++.|++
T Consensus        47 ~~~~e~~~l~~l-~h~--~iv~~~~~~~~~~~~~~~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~  123 (273)
T cd05035          47 EFLSEAACMKDF-DHP--NVMKLIGVCFEASSLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIA  123 (273)
T ss_pred             HHHHHHHHHHhC-CCC--CeeeEEeeeccCCccccCcccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHH
Confidence            345677777777 455  99999998764221  123589999999 899998885432    23589999999999999


Q ss_pred             HHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC---CCCCCccchhhHHHHhhhhccCCCCCC
Q psy320           78 EGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ---SSSKTKSKIFCEILEQCRLNQDFRLDP  154 (202)
Q Consensus        78 ~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~---~~~~~~~~~ape~~~~~~~~~~~~~~~  154 (202)
                      .||.|+|+. +++|+||||+||+++.++.  ++|+|||.++.........   ....+..|++||.+..      ..++.
T Consensus       124 ~aL~~lH~~-~i~H~dlkp~Nil~~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~------~~~~~  194 (273)
T cd05035         124 LGMEYLSNR-NFIHRDLAARNCMLREDMT--VCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLAD------RVYTS  194 (273)
T ss_pred             HHHHHHHhC-CeeccccchheEEECCCCe--EEECCccceeeccccccccccccccCCccccCHhhccc------CCCCc
Confidence            999999996 9999999999999988766  9999999998764332211   1234567999998863      33677


Q ss_pred             CcchhhHHH
Q psy320          155 RVDPTSIKM  163 (202)
Q Consensus       155 ~~Diwsl~~  163 (202)
                      ++|+||+|+
T Consensus       195 ~~Dv~SlG~  203 (273)
T cd05035         195 KSDVWAFGV  203 (273)
T ss_pred             ccchHHHHH
Confidence            999999985

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.92  E-value=3.9e-24  Score=163.39  Aligned_cols=138  Identities=19%  Similarity=0.193  Sum_probs=113.0

Q ss_pred             CccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCce
Q psy320           21 SDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESI   99 (202)
Q Consensus        21 h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~ni   99 (202)
                      |+|++++++++.    .+...|+|+||+ +++|.+++....  .+++..+..++.|++.||.|+|+. +++|+||+|+||
T Consensus        56 ~~~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~lH~~-~i~H~dl~p~ni  128 (260)
T cd05611          56 SPYVAKLYYSFQ----SKDYLYLVMEYLNGGDCASLIKTLG--GLPEDWAKQYIAEVVLGVEDLHQR-GIIHRDIKPENL  128 (260)
T ss_pred             CCCeeeeeeeEE----cCCeEEEEEeccCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCCHHHe
Confidence            559999999998    567999999999 999999987653  489999999999999999999996 999999999999


Q ss_pred             eeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHhcCC
Q psy320          100 FFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLNHQ  179 (202)
Q Consensus       100 l~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~~~~  179 (202)
                      +++.++.  ++|+|||.+.....   .....++..|++||.+...      .++.++|+||+|+..      ..+..|.+
T Consensus       129 l~~~~~~--~~l~dfg~~~~~~~---~~~~~~~~~y~~pe~~~~~------~~~~~~Dv~slG~il------~~l~~g~~  191 (260)
T cd05611         129 LIDQTGH--LKLTDFGLSRNGLE---NKKFVGTPDYLAPETILGV------GDDKMSDWWSLGCVI------FEFLFGYP  191 (260)
T ss_pred             EECCCCc--EEEeecccceeccc---cccCCCCcCccChhhhcCC------CCcchhhhHHHHHHH------HHHHHCCC
Confidence            9998776  99999999876432   2234577889999998732      267799999998632      23444666


Q ss_pred             CCC
Q psy320          180 DFR  182 (202)
Q Consensus       180 ~~~  182 (202)
                      +|.
T Consensus       192 p~~  194 (260)
T cd05611         192 PFH  194 (260)
T ss_pred             CCC
Confidence            654

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.92  E-value=5.3e-24  Score=165.30  Aligned_cols=166  Identities=17%  Similarity=0.214  Sum_probs=126.0

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecC-CceEEEEEEccc-cccHHHHHHHc--CCCCCCHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGI-NGTHVCTVTEIM-AECLCNYMIRQ--KFQPAPLVVAKIIVNQILEGL   80 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~-~~~~~~lv~e~~-~~sL~~~~~~~--~~~~~~~~~~~~~~~qi~~~l   80 (202)
                      ...+|+.+++++.+||  |+++++++|..... .+...++||||+ +++|.+++...  ..+.+++..++.++.|++.||
T Consensus        64 ~~~~e~~~l~~l~~h~--ni~~~~~~~~~~~~~~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al  141 (291)
T cd06639          64 EIEAEYNILQSLPNHP--NVVKFYGMFYKADKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGL  141 (291)
T ss_pred             HHHHHHHHHHHhcCCC--CeEEEEEEEEeccccCCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHH
Confidence            3446788888886666  99999999875321 245799999999 89999988642  234689999999999999999


Q ss_pred             HHHHhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           81 NHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        81 ~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      .+||+. +++|+||+|+||+++.++.  ++|+|||.+....... ......++..|++||.+.... ..+..++.++|+|
T Consensus       142 ~~lH~~-~ivH~dlkp~nili~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-~~~~~~~~~~Di~  217 (291)
T cd06639         142 QHLHNN-RIIHRDVKGNNILLTTEGG--VKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQ-QYDYSYDARCDVW  217 (291)
T ss_pred             HHHHhC-CeeccCCCHHHEEEcCCCC--EEEeecccchhcccccccccCccCCccccChhhhcCCC-CcccccCCccchH
Confidence            999995 9999999999999988776  9999999988754322 222346788899999986322 1122356799999


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCC
Q psy320          160 SIKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       160 sl~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      |+|+..      ..+..|.+++.
T Consensus       218 slGvi~------~el~~g~~p~~  234 (291)
T cd06639         218 SLGITA------IELGDGDPPLF  234 (291)
T ss_pred             HHHHHH------HHHhhCCCCCC
Confidence            998632      24455766664

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.92  E-value=4.2e-24  Score=167.10  Aligned_cols=152  Identities=15%  Similarity=0.190  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            7 TNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         7 ~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      .+|++.++.+ +||  ||+++++.+.    .+.+.|+||||+ +++|.+++...  +.+++..+..++.|++.|+.|+|+
T Consensus        49 ~~e~~~l~~~-~~~--~i~~~~~~~~----~~~~~~lv~e~~~g~~L~~~l~~~--~~~~~~~~~~~~~~i~~~l~~lH~  119 (305)
T cd05609          49 FVERDILTFA-ENP--FVVSMFCSFE----TKRHLCMVMEYVEGGDCATLLKNI--GALPVDMARMYFAETVLALEYLHN  119 (305)
T ss_pred             HHHHHHHHhC-CCC--CeeeeEEEEe----cCCEEEEEEecCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            3566666666 454  9999999998    567999999999 89999999765  348999999999999999999999


Q ss_pred             hCCccccCCCCCceeeecCCcceeEEeeccccccccccc----------------CCCCCCCCccchhhHHHHhhhhccC
Q psy320           86 KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH----------------DQQSSSKTKSKIFCEILEQCRLNQD  149 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~----------------~~~~~~~~~~~~ape~~~~~~~~~~  149 (202)
                      . |++|+||+|+||+++.++.  ++++|||.++......                ......++..|++||.+..      
T Consensus       120 ~-~i~H~dl~p~NIll~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------  190 (305)
T cd05609         120 Y-GIVHRDLKPDNLLITSMGH--IKLTDFGLSKIGLMSLTTNLYEGHIEKDTREFLDKQVCGTPEYIAPEVILR------  190 (305)
T ss_pred             C-CccccCCchHHEEECCCCC--EEEeeCCCccccCcCccccccccccccchhhccccCCccCccccCchhccC------
Confidence            6 9999999999999988776  9999999987421100                0011346778999999763      


Q ss_pred             CCCCCCcchhhHHHHHHHHHHHHHHHhcCCCCC
Q psy320          150 FRLDPRVDPTSIKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       150 ~~~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      ..++.++|+||+|+..+      .+..|..+|.
T Consensus       191 ~~~~~~~Di~slG~vl~------el~~g~~pf~  217 (305)
T cd05609         191 QGYGKPVDWWAMGIILY------EFLVGCVPFF  217 (305)
T ss_pred             CCCCchhhHHHHHHHHH------HHHhCCCCCC
Confidence            33678999999986322      3444655554

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.92  E-value=4.4e-24  Score=163.21  Aligned_cols=156  Identities=16%  Similarity=0.189  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+++++++ +|+  ||+++++.+.    . ...+++|||+ +++|.+++.+.....++...++.++.|++.||.|+
T Consensus        47 ~~~~e~~~l~~l-~~~--~i~~~~~~~~----~-~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~l  118 (260)
T cd05073          47 AFLAEANVMKTL-QHD--KLVKLHAVVT----K-EPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFI  118 (260)
T ss_pred             HHHHHHHHHHhc-CCC--CcceEEEEEc----C-CCeEEEEEeCCCCcHHHHHHhCCccccCHHHHHHHHHHHHHHHHHH
Confidence            355788888888 455  9999999987    3 5789999999 89999999876555688899999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC--CCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ--QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~--~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      |+. |++|+||+|+||+++.++.  ++|+|||.+.........  ....++..|++||.+...      .++.++|+||+
T Consensus       119 H~~-~i~H~dl~p~ni~i~~~~~--~~l~d~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~------~~~~~~Di~sl  189 (260)
T cd05073         119 EQR-NYIHRDLRAANILVSASLV--CKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFG------SFTIKSDVWSF  189 (260)
T ss_pred             HhC-CccccccCcceEEEcCCCc--EEECCCcceeeccCCCcccccCCcccccccCHhHhccC------CcCccccchHH
Confidence            995 9999999999999988776  999999998765432111  122345679999998733      36778999999


Q ss_pred             HHHHHHHHHHHHHHh-cCCCCCC
Q psy320          162 KMYTTFCEILEQCRL-NHQDFRP  183 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~-~~~~~~~  183 (202)
                      |+.      +..+.. |.++|+.
T Consensus       190 G~~------l~~l~t~g~~p~~~  206 (260)
T cd05073         190 GIL------LMEIVTYGRIPYPG  206 (260)
T ss_pred             HHH------HHHHHhcCCCCCCC
Confidence            862      223333 7776653

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.92  E-value=2.9e-24  Score=164.80  Aligned_cols=141  Identities=12%  Similarity=0.109  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|++.+.++ +|+  ||+++.+++.    .....++||||+ +++|.+++.... +.+++..+..++.|++.|+.|+|
T Consensus        53 ~~~e~~~l~~l-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~al~~lH  124 (268)
T cd05063          53 FLSEASIMGQF-SHH--NIIRLEGVVT----KFKPAMIITEYMENGALDKYLRDHD-GEFSSYQLVGMLRGIAAGMKYLS  124 (268)
T ss_pred             HHHHHHHHhcC-CCC--CeeEEEEEEc----cCCCcEEEEEcCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHH
Confidence            44567766666 454  9999999998    456899999999 899999987643 45899999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC----CCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ----SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~----~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      +. |++|+||||+||+++.++.  ++++|||.+..........    ....+..|++||.+..      ..++.++|+||
T Consensus       125 ~~-~i~H~dlkp~Nili~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~------~~~~~~~Dv~s  195 (268)
T cd05063         125 DM-NYVHRDLAARNILVNSNLE--CKVSDFGLSRVLEDDPEGTYTTSGGKIPIRWTAPEAIAY------RKFTSASDVWS  195 (268)
T ss_pred             HC-CeeccccchhhEEEcCCCc--EEECCCccceecccccccceeccCCCcCceecCHHHhhc------CCcChHhHHHH
Confidence            95 9999999999999988766  9999999987654321111    1123446999998873      33677999999


Q ss_pred             HHH
Q psy320          161 IKM  163 (202)
Q Consensus       161 l~~  163 (202)
                      +|+
T Consensus       196 lG~  198 (268)
T cd05063         196 FGI  198 (268)
T ss_pred             HHH
Confidence            986

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.92  E-value=3.6e-24  Score=166.15  Aligned_cols=143  Identities=16%  Similarity=0.161  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCC--------CCCCHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKF--------QPAPLVVAKIIVNQI   76 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~--------~~~~~~~~~~~~~qi   76 (202)
                      +.+|+..++.+ +||  ||+++++++.    .+...|+||||+ +++|.+++.....        ...+...+..++.|+
T Consensus        56 ~~~e~~~l~~l-~~~--~i~~~~~~~~----~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  128 (288)
T cd05061          56 FLNEASVMKGF-TCH--HVVRLLGVVS----KGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEI  128 (288)
T ss_pred             HHHHHHHHHhC-CCC--CeeeEEEEEc----CCCCcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHH
Confidence            45677777777 455  9999999987    456899999999 9999999975321        234567888999999


Q ss_pred             HHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC---CCCCCccchhhHHHHhhhhccCCCCC
Q psy320           77 LEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ---SSSKTKSKIFCEILEQCRLNQDFRLD  153 (202)
Q Consensus        77 ~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~---~~~~~~~~~ape~~~~~~~~~~~~~~  153 (202)
                      +.||.|||++ +++|+||||+||+++.++.  ++|+|||.++.........   ...++..|++||.+..      ..++
T Consensus       129 ~~~l~~lH~~-~i~H~dikp~nili~~~~~--~~L~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~------~~~~  199 (288)
T cd05061         129 ADGMAYLNAK-KFVHRDLAARNCMVAHDFT--VKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKD------GVFT  199 (288)
T ss_pred             HHHHHHHHhC-CCcCCCCChheEEEcCCCc--EEECcCCccccccccccccccCCCcccccccCHHHhcc------CCCC
Confidence            9999999996 9999999999999998776  9999999988653221111   1234567999999873      3367


Q ss_pred             CCcchhhHHHH
Q psy320          154 PRVDPTSIKMY  164 (202)
Q Consensus       154 ~~~Diwsl~~~  164 (202)
                      .++|+||+|+.
T Consensus       200 ~~~DvwslG~~  210 (288)
T cd05061         200 TSSDMWSFGVV  210 (288)
T ss_pred             hHhHHHHHHHH
Confidence            79999999863

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.92  E-value=3.7e-24  Score=164.42  Aligned_cols=141  Identities=16%  Similarity=0.151  Sum_probs=112.6

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+..++.+ +||  ||+++++++.     ....++||||+ +++|.+++.+.. ..++...++.++.|++.||.|+
T Consensus        53 ~~~~e~~~l~~~-~h~--~i~~~~~~~~-----~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~l~~~l~~l  123 (270)
T cd05056          53 KFLQEAYIMRQF-DHP--HIVKLIGVIT-----ENPVWIVMELAPLGELRSYLQVNK-YSLDLASLILYSYQLSTALAYL  123 (270)
T ss_pred             HHHHHHHHHHhC-CCC--chhceeEEEc-----CCCcEEEEEcCCCCcHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHH
Confidence            355678877777 455  9999999887     23578999999 899999997643 3589999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC--CCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ--SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~--~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      |+. |++|+||+|+||+++.++.  ++++|||.+..........  ...++..|++||.+..      ..++.++|+||+
T Consensus       124 H~~-~~~H~dl~p~nili~~~~~--~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~Di~sl  194 (270)
T cd05056         124 ESK-RFVHRDIAARNVLVSSPDC--VKLGDFGLSRYLEDESYYKASKGKLPIKWMAPESINF------RRFTSASDVWMF  194 (270)
T ss_pred             HhC-CeeccccChheEEEecCCC--eEEccCceeeecccccceecCCCCccccccChhhhcc------CCCCchhhhHHH
Confidence            995 9999999999999998776  9999999987654322111  2233457999998763      336779999999


Q ss_pred             HH
Q psy320          162 KM  163 (202)
Q Consensus       162 ~~  163 (202)
                      |+
T Consensus       195 G~  196 (270)
T cd05056         195 GV  196 (270)
T ss_pred             HH
Confidence            85

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.92  E-value=4.5e-24  Score=163.11  Aligned_cols=155  Identities=14%  Similarity=0.178  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+..++++ +|+  ||+++++++.     ....+++|||+ +++|.+++.......++...+..++.|++.||.||
T Consensus        47 ~~~~E~~~l~~l-~h~--~i~~~~~~~~-----~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~L  118 (260)
T cd05067          47 AFLAEANLMKQL-QHP--RLVRLYAVVT-----QEPIYIITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFI  118 (260)
T ss_pred             HHHHHHHHHHhc-CCc--CeeeEEEEEc-----cCCcEEEEEcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            456788888888 455  9999998875     34689999999 89999998776556689999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC--CCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ--QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~--~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      |+. |++|+||+|+||+++.++.  ++++|||.+.........  ....++..|++||.+...      .++.++|+||+
T Consensus       119 H~~-~i~H~dl~p~ni~i~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~------~~~~~~Di~sl  189 (260)
T cd05067         119 ERK-NYIHRDLRAANILVSETLC--CKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYG------TFTIKSDVWSF  189 (260)
T ss_pred             hcC-CeecccccHHhEEEcCCCC--EEEccCcceeecCCCCcccccCCcccccccCHHHhccC------CcCcccchHHH
Confidence            995 9999999999999998776  999999999776421111  122345679999988733      36779999999


Q ss_pred             HHHHHHHHHHHHHHh-cCCCCC
Q psy320          162 KMYTTFCEILEQCRL-NHQDFR  182 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~-~~~~~~  182 (202)
                      |+.      +..+.. |.++|.
T Consensus       190 G~~------l~el~~~g~~p~~  205 (260)
T cd05067         190 GIL------LTEIVTYGRIPYP  205 (260)
T ss_pred             HHH------HHHHHhCCCCCCC
Confidence            863      223333 666664

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.92  E-value=5.6e-24  Score=161.98  Aligned_cols=155  Identities=20%  Similarity=0.236  Sum_probs=123.9

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|++.++.+ +|+  ||+++.+++.    .+...++++||+ +++|.+++.+..  .+++..+..++.|++.|+.|||
T Consensus        49 ~~~e~~~l~~~-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~i~~~l~~lH  119 (258)
T cd06632          49 LEQEIALLSKL-QHP--NIVQYLGTER----EEDNLYIFLELVPGGSLAKLLKKYG--SFPEPVIRLYTRQILLGLEYLH  119 (258)
T ss_pred             HHHHHHHHHhc-CCC--CchheeeeEe----cCCeEEEEEEecCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHH
Confidence            45677777777 455  9999999988    567899999999 899999997753  4899999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~  164 (202)
                      +. |++|+||+|+||+++.++.  ++|+|||.+.............++..|++||.+...     ..++.++|+||+|+.
T Consensus       120 ~~-~i~H~dl~~~ni~~~~~~~--~kl~d~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~-----~~~~~~~D~~slG~~  191 (258)
T cd06632         120 DR-NTVHRDIKGANILVDTNGV--VKLADFGMAKQVVEFSFAKSFKGSPYWMAPEVIAQQ-----GGYGLAADIWSLGCT  191 (258)
T ss_pred             HC-CcccCCCCHHHEEECCCCC--EEEccCccceeccccccccccCCCcceeCHHHhcCC-----CCCCchhhhHHHHHH
Confidence            95 9999999999999988776  999999998876443323345678889999998621     125678999999863


Q ss_pred             HHHHHHHHHHHhcCCCCCC
Q psy320          165 TTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~  183 (202)
                            +..+..|.++|..
T Consensus       192 ------l~~l~~g~~pf~~  204 (258)
T cd06632         192 ------VLEMATGKPPWSQ  204 (258)
T ss_pred             ------HHHHHhCCCCccc
Confidence                  3355557776644

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.92  E-value=6.3e-24  Score=163.01  Aligned_cols=143  Identities=18%  Similarity=0.203  Sum_probs=113.6

Q ss_pred             HHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHc--CCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            8 NLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQ--KFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         8 ~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~--~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      +|+.++.+..+||  ||+++++++.    .....+++|||+ +++|.+++...  ....+++..++.++.|++.+|.+||
T Consensus        57 ~e~~~l~~~~~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh  130 (269)
T cd08528          57 SEVTIIKEQLRHP--NIVRYYKTFL----ENDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLH  130 (269)
T ss_pred             HHHHHHhhcCCCC--CeeeEEeeEc----cCCeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhc
Confidence            4555444433455  9999999998    566999999999 88999887542  2345899999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~  164 (202)
                      +..+++|+||+|+||+++.++.  ++|+|||.+.............++..|++||.+..      ..++.++|+||+|+.
T Consensus       131 ~~~~i~H~dl~~~nil~~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~~~Pe~~~~------~~~~~~~Dv~slG~l  202 (269)
T cd08528         131 KEKRIVHRDLTPNNIMLGEDDK--VTITDFGLAKQKQPESKLTSVVGTILYSCPEIVKN------EPYGEKADVWAFGCI  202 (269)
T ss_pred             cCCceeecCCCHHHEEECCCCc--EEEecccceeecccccccccccCcccCcChhhhcC------CCCchHHHHHHHHHH
Confidence            6338999999999999998776  99999999987654333334567888999999873      336779999999863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.92  E-value=4.4e-24  Score=164.70  Aligned_cols=152  Identities=16%  Similarity=0.211  Sum_probs=121.3

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|++.++++ +|  +||+++++.+.    ++...|+||||+ +++|.+++..   +++++..+..++.|++.|+.++|
T Consensus        49 ~~~e~~~l~~l-~h--~~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~i~~---~~l~~~~~~~~~~~l~~~l~~lh  118 (277)
T cd06640          49 IQQEITVLSQC-DS--PYVTKYYGSYL----KGTKLWIIMEYLGGGSALDLLRA---GPFDEFQIATMLKEILKGLDYLH  118 (277)
T ss_pred             HHHHHHHHHhC-CC--CCEeeEEEEEE----ECCEEEEEEecCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH
Confidence            44567777666 44  49999999998    466999999999 8999998864   34899999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccC-CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD-QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~-~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      +. +++|+||+|+||+++.++.  ++++|||.+........ .....++..|.+||.+...      .++.++|+||+|+
T Consensus       119 ~~-~ivH~dl~p~Nil~~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~y~apE~~~~~------~~~~~~Dv~slG~  189 (277)
T cd06640         119 SE-KKIHRDIKAANVLLSEQGD--VKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIQQS------AYDSKADIWSLGI  189 (277)
T ss_pred             hC-CccCcCCChhhEEEcCCCC--EEEcccccceeccCCccccccccCcccccCHhHhccC------CCccHHHHHHHHH
Confidence            96 9999999999999998776  99999999977643221 2234577789999998733      3677999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~  182 (202)
                      .      +..+..|.+++.
T Consensus       190 i------l~el~tg~~p~~  202 (277)
T cd06640         190 T------AIELAKGEPPNS  202 (277)
T ss_pred             H------HHHHHHCCCCCC
Confidence            3      224555777764

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.92  E-value=6.3e-24  Score=164.16  Aligned_cols=158  Identities=18%  Similarity=0.181  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQK-FQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|++.++++ +|+  ||+++++++.    .....++||||+.++|.+++.... ...+++..+..++.|++.||.||
T Consensus        44 ~~~~E~~~l~~l-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l  116 (284)
T cd07836          44 TAIREISLMKEL-KHE--NIVRLHDVIH----TENKLMLVFEYMDKDLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFC  116 (284)
T ss_pred             HHHHHHHHHHhh-cCC--CEeeeeeeEe----eCCcEEEEEecCCccHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence            345788888888 555  9999999998    456889999999779998886654 23589999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |+. |++|+||+|+||+++.++.  ++++|||.+....... ......++..|++||.+...     ..++.++|+||+|
T Consensus       117 H~~-~i~h~dl~p~ni~~~~~~~--~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~-----~~~~~~~Dv~slG  188 (284)
T cd07836         117 HEN-RVLHRDLKPQNLLINKRGE--LKLADFGLARAFGIPVNTFSNEVVTLWYRAPDVLLGS-----RTYSTSIDIWSVG  188 (284)
T ss_pred             HHC-CeeeCCCCHHHEEECCCCc--EEEeecchhhhhcCCccccccccccccccChHHhcCC-----CCCCcHHHHHHHH
Confidence            996 9999999999999988776  9999999997654321 12234567889999998632     2356789999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +.      +-.+..|.++|..
T Consensus       189 ~~------l~~l~~g~~~~~~  203 (284)
T cd07836         189 CI------MAEMITGRPLFPG  203 (284)
T ss_pred             HH------HHHHHhCCCCCCC
Confidence            63      2255557776653

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.92  E-value=5.6e-24  Score=163.16  Aligned_cols=155  Identities=16%  Similarity=0.168  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+.+++.+ +||  ||+++++.+...  .+...++++||+ +++|.+.+....  .++....+.++.|++.||.+||
T Consensus        51 ~~~e~~~l~~l-~h~--~i~~~~~~~~~~--~~~~~~l~~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~~l~~LH  123 (266)
T cd06651          51 LECEIQLLKNL-QHE--RIVQYYGCLRDR--AEKTLTIFMEYMPGGSVKDQLKAYG--ALTESVTRKYTRQILEGMSYLH  123 (266)
T ss_pred             HHHHHHHHHHc-CCC--CeeeEEEEEEcC--CCCEEEEEEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHH
Confidence            45688888888 455  999999988742  245889999999 899999987653  4899999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeeccccccccccc----CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH----DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~----~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      +. +++|+||+|+||+++.++.  ++|+|||.++......    ......++..|+|||.+..      ..++.++|+||
T Consensus       124 ~~-~i~H~~l~p~nil~~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~Dv~s  194 (266)
T cd06651         124 SN-MIVHRDIKGANILRDSAGN--VKLGDFGASKRLQTICMSGTGIRSVTGTPYWMSPEVISG------EGYGRKADVWS  194 (266)
T ss_pred             hC-CeeeCCCCHHHEEECCCCC--EEEccCCCccccccccccCCccccCCccccccCHHHhCC------CCCCchhhhHH
Confidence            95 9999999999999987766  9999999987653211    1122457788999999863      33677999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCC
Q psy320          161 IKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       161 l~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +|+.      +..+..|.++|.
T Consensus       195 lG~i------~~el~~g~~pf~  210 (266)
T cd06651         195 LGCT------VVEMLTEKPPWA  210 (266)
T ss_pred             HHHH------HHHHHHCCCCcc
Confidence            9862      224445766664

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.92  E-value=5.9e-24  Score=163.14  Aligned_cols=158  Identities=15%  Similarity=0.159  Sum_probs=121.1

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCC--CHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPA--PLVVAKIIVNQILEGLN   81 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~--~~~~~~~~~~qi~~~l~   81 (202)
                      ...+|+++++++ +|+  ||+++++++.    .+...++|+||+ +++|.+++.... ..+  ++..+..++.|++.|+.
T Consensus        51 ~~~~e~~~l~~l-~h~--~iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~~qi~~al~  122 (268)
T cd06624          51 PLHEEIALHSYL-KHR--NIVQYLGSDS----ENGFFKIFMEQVPGGSLSALLRSKW-GPLKDNEQTIIFYTKQILEGLK  122 (268)
T ss_pred             HHHHHHHHHHhc-CCC--Ceeeeeeeec----cCCEEEEEEecCCCCCHHHHHHHhc-ccCCCcHHHHHHHHHHHHHHHH
Confidence            345788888888 455  9999999998    567899999999 899999987643 224  78889999999999999


Q ss_pred             HHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC-CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           82 HLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD-QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        82 ~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~-~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      |||++ |++|+||+|+||+++.+.. .++|+|||.+........ .....+++.|++||.+....    ..++.++|+||
T Consensus       123 ~lH~~-~i~h~dl~p~nil~~~~~~-~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~----~~~~~~~Dv~s  196 (268)
T cd06624         123 YLHDN-QIVHRDIKGDNVLVNTYSG-VVKISDFGTSKRLAGINPCTETFTGTLQYMAPEVIDKGP----RGYGAPADIWS  196 (268)
T ss_pred             HHHHC-CEeecCCCHHHEEEcCCCC-eEEEecchhheecccCCCccccCCCCccccChhhhcccc----ccCCchhhhHH
Confidence            99996 9999999999999976332 499999999876532211 22345788999999986322    33567999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCC
Q psy320          161 IKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       161 l~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +|+..+      .+..|.+++.
T Consensus       197 lGvvl~------~l~~g~~p~~  212 (268)
T cd06624         197 LGCTIV------EMATGKPPFI  212 (268)
T ss_pred             HHHHHH------HHHhCCCCCc
Confidence            986332      4444666654

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>KOG0669|consensus

Probab=99.92  E-value=6.7e-25  Score=161.13  Aligned_cols=154  Identities=17%  Similarity=0.213  Sum_probs=124.0

Q ss_pred             chHHHHHHHHHHHHhcCCCccceeeeeeeEEec----CCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q psy320            3 TNYATNLIKTLIEIQKHPSDKLMKLLDHFQVTG----INGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILE   78 (202)
Q Consensus         3 ~~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~----~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~   78 (202)
                      +..+.+|+++|+.+ +|+  |++.+.+.|....    .....+|+||++|..+|.-++.... -+++...++.+..+++.
T Consensus        60 pitalreikiL~~l-kHe--nv~nliEic~tk~Tp~~r~r~t~ylVf~~cehDLaGlLsn~~-vr~sls~Ikk~Mk~Lm~  135 (376)
T KOG0669|consen   60 PITALREIKILQLL-KHE--NVVNLIEICRTKATPTNRDRATFYLVFDFCEHDLAGLLSNRK-VRFSLSEIKKVMKGLMN  135 (376)
T ss_pred             cHHHHHHHHHHHHh-cch--hHHHHHHHHhhccCCcccccceeeeeHHHhhhhHHHHhcCcc-ccccHHHHHHHHHHHHH
Confidence            45678999999999 566  9999888886422    1345799999999999998885442 46999999999999999


Q ss_pred             HHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC-----CCCCCccchhhHHHHhhhhccCCCCC
Q psy320           79 GLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ-----SSSKTKSKIFCEILEQCRLNQDFRLD  153 (202)
Q Consensus        79 ~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~-----~~~~~~~~~ape~~~~~~~~~~~~~~  153 (202)
                      ||.|+|.. .|+|||+||+|+|++.++.  ++|+|||+++.+.......     ....|.+|+.||.+.     +.+.|+
T Consensus       136 GL~~iHr~-kilHRDmKaaNvLIt~dgi--lklADFGlar~fs~~~n~~kprytnrvvTLwYrppEllL-----G~r~yg  207 (376)
T KOG0669|consen  136 GLYYIHRN-KILHRDMKAANVLITKDGI--LKLADFGLARAFSTSKNVVKPRYTNRVVTLWYRPPELLL-----GDREYG  207 (376)
T ss_pred             HHHHHHHh-hHHhhcccHhhEEEcCCce--EEeeccccccceecccccCCCCcccceeeeecCCHHHhh-----cccccC
Confidence            99999996 9999999999999999887  9999999997764322211     235688999999998     356789


Q ss_pred             CCcchhhHHH--HHHHH
Q psy320          154 PRVDPTSIKM--YTTFC  168 (202)
Q Consensus       154 ~~~Diwsl~~--~~~~~  168 (202)
                      ++.|+|+.|+  -+|++
T Consensus       208 ~~iDiWgAgCimaeMwt  224 (376)
T KOG0669|consen  208 PPIDIWGAGCIMAEMWT  224 (376)
T ss_pred             CcchhHhHHHHHHHHHc
Confidence            9999998854  35544

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.92  E-value=7.8e-24  Score=163.44  Aligned_cols=141  Identities=17%  Similarity=0.210  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+..++++ +||  ||+++++++.    + ...++|+||+ +++|.+++.... ..+++..+..++.|++.|+.||
T Consensus        55 ~~~~e~~~l~~l-~h~--~i~~~~~~~~----~-~~~~~v~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~L  125 (279)
T cd05057          55 EILDEAYVMASV-DHP--HVVRLLGICL----S-SQVQLITQLMPLGCLLDYVRNHK-DNIGSQYLLNWCVQIAKGMSYL  125 (279)
T ss_pred             HHHHHHHHHHhC-CCC--CcceEEEEEe----c-CceEEEEecCCCCcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHH
Confidence            345678888877 455  9999999987    3 5889999999 899999987654 3489999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC---CCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ---SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~---~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      |+. +++|+||+|+||+++.++.  ++|+|||.++.........   ....+..|++||....      ..++.++|+||
T Consensus       126 H~~-~i~H~di~p~nil~~~~~~--~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~------~~~~~~~Di~s  196 (279)
T cd05057         126 EEK-RLVHRDLAARNVLVKTPQH--VKITDFGLAKLLDVDEKEYHAEGGKVPIKWMALESILH------RIYTHKSDVWS  196 (279)
T ss_pred             HhC-CEEecccCcceEEEcCCCe--EEECCCcccccccCcccceecCCCcccccccCHHHhhc------CCcCchhhHHH
Confidence            995 9999999999999987766  9999999998765322211   1223457999998863      33677999999


Q ss_pred             HHH
Q psy320          161 IKM  163 (202)
Q Consensus       161 l~~  163 (202)
                      +|+
T Consensus       197 lG~  199 (279)
T cd05057         197 YGV  199 (279)
T ss_pred             HHH
Confidence            986

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.92  E-value=5.8e-24  Score=172.03  Aligned_cols=145  Identities=16%  Similarity=0.174  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCC----------------------
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKF----------------------   61 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~----------------------   61 (202)
                      ...+|++++.++..||  ||+++++++.    .....++||||+ +++|.+++.+...                      
T Consensus        86 ~~~~E~~~l~~l~~H~--niv~~~~~~~----~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (401)
T cd05107          86 ALMSELKIMSHLGPHL--NIVNLLGACT----KGGPIYIITEYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGST  159 (401)
T ss_pred             HHHHHHHHHHhcCCCC--CeEEEEEEEc----cCCCcEEEEeccCCCcHHHHHHhccccchhhhcccccccccccccccc
Confidence            3557888888884365  9999999998    456899999999 9999999975321                      


Q ss_pred             --------------------------------------------------------------------------CCCCHH
Q psy320           62 --------------------------------------------------------------------------QPAPLV   67 (202)
Q Consensus        62 --------------------------------------------------------------------------~~~~~~   67 (202)
                                                                                                ..++..
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  239 (401)
T cd05107         160 PLSQRKSHVSLGSESDGGYMDMSKDESADYVPMQDMKGTVKYADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYM  239 (401)
T ss_pred             cccccccchhhhhccCccccccCCccccCccchhcchhhhhhhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHH
Confidence                                                                                      235667


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC---CCCCCCCccchhhHHHHhh
Q psy320           68 VAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD---QQSSSKTKSKIFCEILEQC  144 (202)
Q Consensus        68 ~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~ape~~~~~  144 (202)
                      .+..++.|++.||.|||+. +++||||||+|||++.++.  ++|+|||.++.......   .....++..|++||.+.. 
T Consensus       240 ~~~~~~~qi~~aL~~LH~~-~ivHrdlkp~NiLl~~~~~--~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-  315 (401)
T cd05107         240 DLVGFSYQVANGMEFLASK-NCVHRDLAARNVLICEGKL--VKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESIFN-  315 (401)
T ss_pred             HHHHHHHHHHHHHHHHhcC-CcCcccCCcceEEEeCCCE--EEEEecCcceecccccccccCCCcCCCCceeChHHhcC-
Confidence            7888999999999999996 9999999999999987665  99999999986532211   112346678999999873 


Q ss_pred             hhccCCCCCCCcchhhHHHH
Q psy320          145 RLNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus       145 ~~~~~~~~~~~~Diwsl~~~  164 (202)
                           ..++.++|+||+|+.
T Consensus       316 -----~~~~~~~DvwslGvi  330 (401)
T cd05107         316 -----NLYTTLSDVWSFGIL  330 (401)
T ss_pred             -----CCCCcHhHHHHHHHH
Confidence                 336779999999863

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.92  E-value=3.6e-24  Score=167.34  Aligned_cols=140  Identities=17%  Similarity=0.235  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      +.+|+.+++.+ +||  ||+++++++..     ...+++++|+ +++|.+++.... ..+++..+..++.|++.||.|||
T Consensus        56 ~~~e~~~~~~l-~h~--niv~~~~~~~~-----~~~~~v~e~~~~g~l~~~~~~~~-~~~~~~~~~~~~~qi~~~L~~LH  126 (303)
T cd05110          56 FMDEALIMASM-DHP--HLVRLLGVCLS-----PTIQLVTQLMPHGCLLDYVHEHK-DNIGSQLLLNWCVQIAKGMMYLE  126 (303)
T ss_pred             HHHHHHHHHhC-CCC--CcccEEEEEcC-----CCceeeehhcCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHh
Confidence            35677777777 455  99999999872     2467899999 899999987643 35899999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC---CCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ---QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~---~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      +. |++|+||||+||+++.++.  +||+|||.++........   ....++..|++||.+..      ..++.++|+||+
T Consensus       127 ~~-~ivH~dikp~Nill~~~~~--~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~------~~~~~~~Diwsl  197 (303)
T cd05110         127 ER-RLVHRDLAARNVLVKSPNH--VKITDFGLARLLEGDEKEYNADGGKMPIKWMALECIHY------RKFTHQSDVWSY  197 (303)
T ss_pred             hc-CeeccccccceeeecCCCc--eEEccccccccccCcccccccCCCccccccCCHHHhcc------CCCChHHHHHHH
Confidence            96 9999999999999987776  999999999876432211   12234568999998873      336789999999


Q ss_pred             HH
Q psy320          162 KM  163 (202)
Q Consensus       162 ~~  163 (202)
                      |+
T Consensus       198 G~  199 (303)
T cd05110         198 GV  199 (303)
T ss_pred             HH
Confidence            85

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>KOG1027|consensus

Probab=99.92  E-value=5.2e-25  Score=183.09  Aligned_cols=148  Identities=21%  Similarity=0.252  Sum_probs=118.8

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQK--FQPAPLVVAKIIVNQILEGLN   81 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~--~~~~~~~~~~~~~~qi~~~l~   81 (202)
                      .++.+||+.|+.-.+||  |||++++.-.    +.++.|+..|.|..+|.+++....  ......-.......|++.||.
T Consensus       547 ~~A~rEi~lL~eSD~H~--NviRyyc~E~----d~qF~YIalELC~~sL~dlie~~~~d~~~~~~i~~~~~l~q~~~Gla  620 (903)
T KOG1027|consen  547 DFAQREIQLLQESDEHP--NVIRYYCSEQ----DRQFLYIALELCACSLQDLIESSGLDVEMQSDIDPISVLSQIASGLA  620 (903)
T ss_pred             HHHHHHHHHHHhccCCC--ceEEEEeecc----CCceEEEEehHhhhhHHHHHhccccchhhcccccHHHHHHHHHHHHH
Confidence            46788999888886666  9999988876    577999999999999999998741  111111345778899999999


Q ss_pred             HHHhhCCccccCCCCCceeeec---CCcceeEEeecccccccccccCCC----CCCCCccchhhHHHHhhhhccCCCCCC
Q psy320           82 HLHTKHNLVHTSIKPESIFFKA---DHVYIMTLINIQQATTHQECHDQQ----SSSKTKSKIFCEILEQCRLNQDFRLDP  154 (202)
Q Consensus        82 ~lh~~~~ivH~dl~p~nil~~~---~~~~~~~l~Dfg~a~~~~~~~~~~----~~~~~~~~~ape~~~~~~~~~~~~~~~  154 (202)
                      +||+ ++||||||||.|||+..   ++..+++|+|||+++.......+.    ...||.+|+|||++....      -..
T Consensus       621 HLHs-l~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl~~~~sS~~r~s~~sGt~GW~APE~L~~~~------~~~  693 (903)
T KOG1027|consen  621 HLHS-LKIVHRDLKPQNILISVPSADGTLRAKISDFGLSKKLAGGKSSFSRLSGGSGTSGWQAPEQLREDR------KTQ  693 (903)
T ss_pred             HHHh-cccccccCCCceEEEEccCCCcceeEEecccccccccCCCcchhhcccCCCCcccccCHHHHhccc------cCc
Confidence            9999 79999999999999998   455579999999999987544333    347899999999999443      345


Q ss_pred             CcchhhHHHH
Q psy320          155 RVDPTSIKMY  164 (202)
Q Consensus       155 ~~Diwsl~~~  164 (202)
                      ++||+|+|+.
T Consensus       694 avDiFslGCv  703 (903)
T KOG1027|consen  694 AVDIFSLGCV  703 (903)
T ss_pred             ccchhhcCce
Confidence            8999999863

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.92  E-value=2.2e-24  Score=166.34  Aligned_cols=152  Identities=16%  Similarity=0.242  Sum_probs=121.1

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+++++.+ +||  ||+++++.|.    .+...|+|+||+ +++|.+++..   +.+++..++.++.|++.|+.|+|
T Consensus        49 ~~~e~~~l~~l-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~~i~~~l~~lH  118 (277)
T cd06642          49 IQQEITVLSQC-DSP--YITRYYGSYL----KGTKLWIIMEYLGGGSALDLLKP---GPLEETYIATILREILKGLDYLH  118 (277)
T ss_pred             HHHHHHHHHcC-CCC--ccHhhhcccc----cCCceEEEEEccCCCcHHHHhhc---CCCCHHHHHHHHHHHHHHHHHHh
Confidence            45677777777 455  9999999998    566899999999 8999988754   34899999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      ++ |++|+||+|+||+++.++.  ++++|||.+....... ......++..|++||.+...      .++.++|+||+|+
T Consensus       119 ~~-~ivH~dl~p~ni~i~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~------~~~~~~Dv~slG~  189 (277)
T cd06642         119 SE-RKIHRDIKAANVLLSEQGD--VKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQS------AYDFKADIWSLGI  189 (277)
T ss_pred             cC-CeeccCCChheEEEeCCCC--EEEccccccccccCcchhhhcccCcccccCHHHhCcC------CCchhhhHHHHHH
Confidence            96 9999999999999998776  9999999987654322 11234577889999998733      3677999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~  182 (202)
                      ..+      .+..|.+++.
T Consensus       190 il~------el~tg~~p~~  202 (277)
T cd06642         190 TAI------ELAKGEPPNS  202 (277)
T ss_pred             HHH------HHHhCCCCCc
Confidence            322      4445776654

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.92  E-value=9.7e-24  Score=163.60  Aligned_cols=152  Identities=16%  Similarity=0.246  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+.+++.+ +||  ||+++++++.    .+.+.|+++||+ +++|.+++..   ++++...++.++.|++.|+.++|
T Consensus        63 ~~~e~~~l~~~-~h~--~vv~~~~~~~----~~~~~~~v~e~~~~~~L~~~~~~---~~~~~~~~~~~~~ql~~~l~~lH  132 (285)
T cd06648          63 LFNEVVIMRDY-QHP--NIVEMYSSYL----VGDELWVVMEFLEGGALTDIVTH---TRMNEEQIATVCLAVLKALSFLH  132 (285)
T ss_pred             HHHHHHHHHHc-CCC--ChheEEEEEE----cCCeEEEEEeccCCCCHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHH
Confidence            45677777777 455  9999999998    466899999999 8999998876   34899999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      +. |++|+||+|+||+++.++.  ++++|||.+....... ......++..|++||....      ..++.++|+||+|+
T Consensus       133 ~~-~i~H~dl~p~Nil~~~~~~--~~l~d~g~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~Dv~slGv  203 (285)
T cd06648         133 AQ-GVIHRDIKSDSILLTSDGR--VKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPEVISR------LPYGTEVDIWSLGI  203 (285)
T ss_pred             hC-CeecCCCChhhEEEcCCCc--EEEcccccchhhccCCcccccccCCccccCHHHhcC------CCCCCcccHHHHHH
Confidence            95 9999999999999988776  9999999887553321 1223467889999999863      33677999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~  182 (202)
                      .      +..+..|..+|.
T Consensus       204 ~------l~ell~g~~p~~  216 (285)
T cd06648         204 M------VIEMVDGEPPYF  216 (285)
T ss_pred             H------HHHHHhCCCCCc
Confidence            3      224444655553

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.92  E-value=3.7e-24  Score=165.44  Aligned_cols=157  Identities=21%  Similarity=0.229  Sum_probs=124.8

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      .+.+|++.++.+ +||  |++++++++.    .+...|+++||++++|.+++.......+++..++.++.|++.||.|||
T Consensus        44 ~~~~E~~~l~~l-~~~--~iv~~~~~~~----~~~~~~iv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH  116 (283)
T cd07835          44 TAIREISLLKEL-NHP--NIVRLLDVVH----SENKLYLVFEFLDLDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCH  116 (283)
T ss_pred             HHHHHHHHHHhc-CCC--CccCHhheec----cCCeEEEEEeccCcCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            356788888888 455  9999999998    567999999999889999987765446899999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      +. +++|+||+|+||+++.++.  ++|+|||.+....... ......++..|++||.+..     ...++.++|+||+|+
T Consensus       117 ~~-~~~H~dl~p~nil~~~~~~--~~l~df~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-----~~~~~~~~Di~slG~  188 (283)
T cd07835         117 SH-RVLHRDLKPQNLLIDREGA--LKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLG-----SRQYSTPVDIWSIGC  188 (283)
T ss_pred             HC-CeeCCCCCHHHEEEcCCCc--EEEeecccccccCCCccccCccccccCCCCCceeec-----CcccCcHHHHHHHHH
Confidence            96 9999999999999998766  9999999997653221 1122345778999998752     223567899999997


Q ss_pred             HHHHHHHHHHHHhcCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~  182 (202)
                      .      +..+..|.++|.
T Consensus       189 ~------l~~l~~g~~pf~  201 (283)
T cd07835         189 I------FAEMVNRRPLFP  201 (283)
T ss_pred             H------HHHHHhCCCCCC
Confidence            3      225555777664

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.92  E-value=5.9e-24  Score=166.50  Aligned_cols=157  Identities=15%  Similarity=0.154  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      ..+|+.+++++ +|+  ||+++++++...  .....++||||+.++|.+++.... ..+++..++.++.|++.||.|||+
T Consensus        53 ~~~E~~~l~~l-~h~--~i~~~~~~~~~~--~~~~~~lv~e~~~~~l~~~l~~~~-~~l~~~~~~~~~~qi~~~l~~lH~  126 (309)
T cd07845          53 SLREITLLLNL-RHP--NIVELKEVVVGK--HLDSIFLVMEYCEQDLASLLDNMP-TPFSESQVKCLMLQLLRGLQYLHE  126 (309)
T ss_pred             hhHHHHHHHhC-CCC--CCcceEEEEecC--CCCeEEEEEecCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHHHh
Confidence            35688888888 455  999999998732  235789999999889988887643 458999999999999999999999


Q ss_pred             hCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHH
Q psy320           86 KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~  164 (202)
                      . |++|+||+|+||+++.++.  ++|+|||.+....... ......++..|++||.+..     ...++.++|+||+|+.
T Consensus       127 ~-~i~H~dl~p~nil~~~~~~--~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-----~~~~~~~~DvwslG~i  198 (309)
T cd07845         127 N-FIIHRDLKVSNLLLTDKGC--LKIADFGLARTYGLPAKPMTPKVVTLWYRAPELLLG-----CTTYTTAIDMWAVGCI  198 (309)
T ss_pred             C-CeecCCCCHHHEEECCCCC--EEECccceeeecCCccCCCCcccccccccChhhhcC-----CCCcCchHHHHHHHHH
Confidence            5 9999999999999998776  9999999998765332 1223345678999999863     2335779999999863


Q ss_pred             HHHHHHHHHHHhcCCCCC
Q psy320          165 TTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~  182 (202)
                      .+      .+..|.++|.
T Consensus       199 l~------el~~g~~~f~  210 (309)
T cd07845         199 LA------ELLAHKPLLP  210 (309)
T ss_pred             HH------HHHhCCCCCC
Confidence            22      4444666654

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.92  E-value=8.8e-24  Score=165.17  Aligned_cols=147  Identities=18%  Similarity=0.218  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecC----CceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGI----NGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGL   80 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~----~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l   80 (202)
                      ...+|+++++++ +||  ||+++++++...+.    .....++||||++++|.+.+.... ..+++..++.++.|++.||
T Consensus        57 ~~~~e~~~l~~l-~h~--~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~l~~~~-~~~~~~~~~~i~~qi~~al  132 (310)
T cd07865          57 TALREIKILQLL-KHE--NVVNLIEICRTKATPYNRYKGSFYLVFEFCEHDLAGLLSNKN-VKFTLSEIKKVMKMLLNGL  132 (310)
T ss_pred             HHHHHHHHHHhC-CCC--CccceEEEEecccccccCCCceEEEEEcCCCcCHHHHHHhcc-cCCCHHHHHHHHHHHHHHH
Confidence            345788888888 555  99999999875321    235779999999889988886543 3589999999999999999


Q ss_pred             HHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC-----CCCCCCccchhhHHHHhhhhccCCCCCCC
Q psy320           81 NHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ-----QSSSKTKSKIFCEILEQCRLNQDFRLDPR  155 (202)
Q Consensus        81 ~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~-----~~~~~~~~~~ape~~~~~~~~~~~~~~~~  155 (202)
                      .|||+. |++|+||+|+||+++.++.  ++|+|||.+.........     ....++..|+|||.+..     ...++.+
T Consensus       133 ~~lH~~-~i~H~dl~p~nil~~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-----~~~~~~~  204 (310)
T cd07865         133 YYIHRN-KILHRDMKAANILITKDGI--LKLADFGLARAFSLSKNSKPNRYTNRVVTLWYRPPELLLG-----ERDYGPP  204 (310)
T ss_pred             HHHHHC-CeeccCCCHHHEEECCCCc--EEECcCCCcccccCCcccCCCCccCcccCccccCcHHhcC-----CcccCch
Confidence            999996 9999999999999988776  999999999876432211     12346678999998862     2335678


Q ss_pred             cchhhHHH
Q psy320          156 VDPTSIKM  163 (202)
Q Consensus       156 ~Diwsl~~  163 (202)
                      +|+||+|+
T Consensus       205 ~Di~slG~  212 (310)
T cd07865         205 IDMWGAGC  212 (310)
T ss_pred             hhhHHHHH
Confidence            99999986

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.92  E-value=2.3e-24  Score=164.97  Aligned_cols=156  Identities=17%  Similarity=0.231  Sum_probs=125.7

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|++.++++ +||  ||+++++.+.    .....++++||+ +++|.+++.... +.+++..+..++.|++.|+.|+
T Consensus        45 ~~~~e~~~l~~~-~~~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~l  116 (265)
T cd06605          45 QILRELDILHKC-NSP--YIVGFYGAFY----NNGDISICMEYMDGGSLDKILKEVQ-GRIPERILGKIAVAVLKGLTYL  116 (265)
T ss_pred             HHHHHHHHHHHC-CCC--chhhhheeee----cCCEEEEEEEecCCCcHHHHHHHcc-CCCCHHHHHHHHHHHHHHHHHH
Confidence            345677777777 355  9999999998    467999999999 799999997653 4599999999999999999999


Q ss_pred             Hh-hCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HT-KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~-~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |+ . |++|+||+|+||+++.++.  ++|+|||.+......... ...++..|++||.+...      .++.++|+||+|
T Consensus       117 H~~~-~i~H~dl~~~ni~~~~~~~--~~l~d~g~~~~~~~~~~~-~~~~~~~y~~PE~~~~~------~~~~~~Dv~slG  186 (265)
T cd06605         117 HEKH-KIIHRDVKPSNILVNSRGQ--IKLCDFGVSGQLVNSLAK-TFVGTSSYMAPERIQGN------DYSVKSDIWSLG  186 (265)
T ss_pred             cCCC-CeecCCCCHHHEEECCCCC--EEEeecccchhhHHHHhh-cccCChhccCHHHHcCC------CCCchhhHHHHH
Confidence            99 7 9999999999999998776  999999998766432222 26677889999998733      477899999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      +.      +-.+..|..++.+.
T Consensus       187 ~~------l~~l~~g~~p~~~~  202 (265)
T cd06605         187 LS------LIELATGRFPYPPE  202 (265)
T ss_pred             HH------HHHHHhCCCCCCcc
Confidence            63      23555577777544

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>KOG0695|consensus

Probab=99.92  E-value=1.2e-24  Score=165.72  Aligned_cols=152  Identities=20%  Similarity=0.199  Sum_probs=129.3

Q ss_pred             HHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhC
Q psy320            9 LIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKH   87 (202)
Q Consensus         9 e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~   87 (202)
                      |-....+.+++|  ++|.++..|+    +.+.+++|.||+ ||+|--.+.+.  +++|++.++.+..+|..||.|||++ 
T Consensus       300 ek~vfe~asn~p--flvglhscfq----tesrlffvieyv~ggdlmfhmqrq--rklpeeharfys~ei~lal~flh~r-  370 (593)
T KOG0695|consen  300 EKHVFEQASNNP--FLVGLHSCFQ----TESRLFFVIEYVNGGDLMFHMQRQ--RKLPEEHARFYSAEICLALNFLHER-  370 (593)
T ss_pred             hHHHHHhccCCC--eEEehhhhhc----ccceEEEEEEEecCcceeeehhhh--hcCcHHHhhhhhHHHHHHHHHHhhc-
Confidence            444445555566  9999999999    688999999999 99997777665  4599999999999999999999997 


Q ss_pred             CccccCCCCCceeeecCCcceeEEeecccccccccccCCC-CCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHHH
Q psy320           88 NLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ-SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTT  166 (202)
Q Consensus        88 ~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~-~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~~  166 (202)
                      ||+.||||.+|+|++..+.  +||+|+|.++....++... ..+||+.|+|||++.+..      |...+|+|++|+   
T Consensus       371 giiyrdlkldnvlldaegh--ikltdygmcke~l~~gd~tstfcgtpnyiapeilrgee------ygfsvdwwalgv---  439 (593)
T KOG0695|consen  371 GIIYRDLKLDNVLLDAEGH--IKLTDYGMCKEGLGPGDTTSTFCGTPNYIAPEILRGEE------YGFSVDWWALGV---  439 (593)
T ss_pred             CeeeeeccccceEEccCCc--eeecccchhhcCCCCCcccccccCCCcccchhhhcccc------cCceehHHHHHH---
Confidence            9999999999999999988  9999999999876665444 689999999999999666      888999999987   


Q ss_pred             HHHHHHHHHhcCCCCCC
Q psy320          167 FCEILEQCRLNHQDFRP  183 (202)
Q Consensus       167 ~~~~~~~~~~~~~~~~~  183 (202)
                         ++-.+.+|+.||..
T Consensus       440 ---lmfemmagrspfdi  453 (593)
T KOG0695|consen  440 ---LMFEMMAGRSPFDI  453 (593)
T ss_pred             ---HHHHHHcCCCCcce
Confidence               33355668888864

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.92  E-value=7.9e-24  Score=164.11  Aligned_cols=143  Identities=15%  Similarity=0.194  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC--------------------CCC
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK--------------------FQP   63 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~--------------------~~~   63 (202)
                      .+.+|++.++++ +||  ||+++++++.    .+...|+|+||+ +++|.+++....                    ...
T Consensus        54 ~~~~ei~~l~~l-~h~--~iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (288)
T cd05050          54 DFQREAALMAEF-DHP--NIVKLLGVCA----VGKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLP  126 (288)
T ss_pred             HHHHHHHHHHhc-CCC--chheEEEEEc----CCCccEEEEecCCCCCHHHHHHHcCccccccccccccccccccccccc
Confidence            355688888888 555  9999999988    466899999999 889999997532                    124


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC---CCCCCCCccchhhHH
Q psy320           64 APLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD---QQSSSKTKSKIFCEI  140 (202)
Q Consensus        64 ~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~ape~  140 (202)
                      +++..++.++.|++.||.|+|+. +++|+||+|+||+++.++.  ++++|||.+........   ......+..|++||.
T Consensus       127 l~~~~~~~~~~~i~~aL~~lH~~-~i~H~dl~p~nil~~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~  203 (288)
T cd05050         127 LSCTEQLCIAKQVAAGMAYLSER-KFVHRDLATRNCLVGENMV--VKIADFGLSRNIYSADYYKASENDAIPIRWMPPES  203 (288)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhC-CeecccccHhheEecCCCc--eEECccccceecccCccccccCCCccChhhcCHHH
Confidence            78888999999999999999996 9999999999999988776  99999999876532211   112234567999998


Q ss_pred             HHhhhhccCCCCCCCcchhhHHH
Q psy320          141 LEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus       141 ~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      ....      .++.++|+||+|+
T Consensus       204 ~~~~------~~~~~~Dv~slG~  220 (288)
T cd05050         204 IFYN------RYTTESDVWAYGV  220 (288)
T ss_pred             HhcC------CCCchhHHHHHHH
Confidence            8733      3778999999985

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.92  E-value=3.9e-24  Score=165.47  Aligned_cols=155  Identities=21%  Similarity=0.237  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+++++.+ +||  ||++++++|.    .+...|+|+||+ +++|..+....  +.+++..++.++.|++.||.||
T Consensus        46 ~~~~e~~~l~~l-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~~i~~~l~~L  116 (286)
T cd07846          46 IAMREIRMLKQL-RHE--NLVNLIEVFR----RKKRLYLVFEFVDHTVLDDLEKYP--NGLDESRVRKYLFQILRGIEFC  116 (286)
T ss_pred             HHHHHHHHHHhc-CCc--chhhHHHhcc----cCCeEEEEEecCCccHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHH
Confidence            456788888888 555  9999999998    567999999999 77777766543  3489999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC-CCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ-QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~-~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |+. |++|+||+|+||+++.++.  ++|+|||.+......... ....++..|++||.+...     ..++.++|+||+|
T Consensus       117 H~~-~i~h~~l~p~ni~~~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-----~~~~~~~Dv~slG  188 (286)
T cd07846         117 HSH-NIIHRDIKPENILVSQSGV--VKLCDFGFARTLAAPGEVYTDYVATRWYRAPELLVGD-----TKYGRAVDIWAVG  188 (286)
T ss_pred             HHC-CccccCCCHHHEEECCCCc--EEEEeeeeeeeccCCccccCcccceeeccCcHHhccc-----cccCchHhHHHHH
Confidence            996 9999999999999988776  999999998875433222 123567789999998632     2355689999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +.      +..+..|.++|.
T Consensus       189 ~~------l~el~~g~~~~~  202 (286)
T cd07846         189 CL------VTEMLTGEPLFP  202 (286)
T ss_pred             HH------HHHHHcCCCCCC
Confidence            63      224445766664

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.92  E-value=6.2e-24  Score=168.86  Aligned_cols=145  Identities=17%  Similarity=0.181  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC-----------------------
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK-----------------------   60 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~-----------------------   60 (202)
                      ...+|+.++.++..||  ||+++++++..   .+...++||||+ +++|.+++....                       
T Consensus        56 ~~~~E~~~l~~l~~h~--niv~~~~~~~~---~~~~~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (343)
T cd05103          56 ALMSELKILIHIGHHL--NVVNLLGACTK---PGGPLMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDI  130 (343)
T ss_pred             HHHHHHHHHHhccCCc--cHhhhcceeec---CCCceEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccch
Confidence            3457888888885455  99999998874   345789999999 999999986531                       


Q ss_pred             ------------------------------------------CCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCc
Q psy320           61 ------------------------------------------FQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPES   98 (202)
Q Consensus        61 ------------------------------------------~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~n   98 (202)
                                                                .+.++...+..++.|++.||.|||++ |++||||||+|
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~-~i~H~dikp~N  209 (343)
T cd05103         131 SEDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAEQEDLYKKVLTLEDLICYSFQVAKGMEFLASR-KCIHRDLAARN  209 (343)
T ss_pred             hhhhhhhccccccccccccccccCCCccccchhhhhhhhhhhhccCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCccCe
Confidence                                                      12367788889999999999999996 99999999999


Q ss_pred             eeeecCCcceeEEeecccccccccccCCC---CCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           99 IFFKADHVYIMTLINIQQATTHQECHDQQ---SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        99 il~~~~~~~~~~l~Dfg~a~~~~~~~~~~---~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |+++.++.  ++++|||.+..........   ...++..|++||.+..      ..++.++|+||+|+
T Consensus       210 il~~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~Di~slG~  269 (343)
T cd05103         210 ILLSENNV--VKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFD------RVYTIQSDVWSFGV  269 (343)
T ss_pred             EEEcCCCc--EEEEecccccccccCcchhhcCCCCCCcceECcHHhcC------CCCCchhhHHHHHH
Confidence            99998776  9999999988653221111   1234567999999863      33677999999986

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.92  E-value=1.5e-23  Score=162.67  Aligned_cols=159  Identities=17%  Similarity=0.180  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHc--CCCCCCHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQ--KFQPAPLVVAKIIVNQILEGLN   81 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~--~~~~~~~~~~~~~~~qi~~~l~   81 (202)
                      ...+|++.++++ +||  ||++++++|...  ....+|+||||+ +++|.+++...  ....+++..+..++.|++.||.
T Consensus        45 ~~~~e~~~l~~l-~h~--~iv~~~~~~~~~--~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~  119 (287)
T cd06621          45 QILRELEINKSC-KSP--YIVKYYGAFLDE--SSSSIGIAMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLS  119 (287)
T ss_pred             HHHHHHHHHHhC-CCC--CeeeeeeEEEcc--CCCeEEEEEEecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence            346788888887 455  999999998642  245789999999 89998886542  2345899999999999999999


Q ss_pred             HHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           82 HLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        82 ~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      |+|+. |++|+||+|+||+++.++.  ++|+|||.+....... .....++..|++||.+..      ..++.++|+||+
T Consensus       120 ~lH~~-~i~H~dl~~~nil~~~~~~--~~l~dfg~~~~~~~~~-~~~~~~~~~y~~pE~~~~------~~~~~~~Dv~sl  189 (287)
T cd06621         120 YLHSR-KIIHRDIKPSNILLTRKGQ--VKLCDFGVSGELVNSL-AGTFTGTSFYMAPERIQG------KPYSITSDVWSL  189 (287)
T ss_pred             HHHHC-CcccCCCCHHHEEEecCCe--EEEeeccccccccccc-cccccCCccccCHHHhcC------CCCCchhhHHHH
Confidence            99995 9999999999999988776  9999999987653221 123456778999999873      347789999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCC
Q psy320          162 KMYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      |+.      +..+..|..++...
T Consensus       190 G~i------l~~l~~g~~p~~~~  206 (287)
T cd06621         190 GLT------LLEVAQNRFPFPPE  206 (287)
T ss_pred             HHH------HHHHHhCCCCCCcc
Confidence            863      33555677777654

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.92  E-value=8.1e-24  Score=162.11  Aligned_cols=156  Identities=15%  Similarity=0.166  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|++.++++ +|+  ||+++++.+...  .+...++++||+ +++|.+++....  .+++..++.++.|++.||.||
T Consensus        50 ~~~~ei~~l~~l-~h~--~i~~~~~~~~~~--~~~~~~~v~e~~~~~~L~~~~~~~~--~l~~~~~~~~~~~i~~al~~L  122 (264)
T cd06653          50 ALECEIQLLKNL-RHD--RIVQYYGCLRDP--EEKKLSIFVEYMPGGSIKDQLKAYG--ALTENVTRRYTRQILQGVSYL  122 (264)
T ss_pred             HHHHHHHHHHHc-CCC--CcceEEEEEEcC--CCCEEEEEEEeCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHH
Confidence            345688888888 455  999999988631  245788999999 899999987653  489999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc----CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH----DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~----~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      |+. |++|+||+|+||+++.++.  ++|+|||.++......    ......++..|++||.+..      ...+.++|+|
T Consensus       123 H~~-~i~H~dl~p~ni~i~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~Di~  193 (264)
T cd06653         123 HSN-MIVHRDIKGANILRDSAGN--VKLGDFGASKRIQTICMSGTGIKSVTGTPYWMSPEVISG------EGYGRKADVW  193 (264)
T ss_pred             HhC-CEecCCCCHHHEEEcCCCC--EEECccccccccccccccCccccccCCcccccCHhhhcC------CCCCccccHH
Confidence            995 9999999999999988776  9999999998653211    1112457888999999873      2356789999


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCC
Q psy320          160 SIKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       160 sl~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      |+|+..+      .+..|.++|.
T Consensus       194 slG~il~------~l~~g~~p~~  210 (264)
T cd06653         194 SVACTVV------EMLTEKPPWA  210 (264)
T ss_pred             HHHHHHH------HHHhCCCCCC
Confidence            9986322      3444666664

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.92  E-value=1.4e-23  Score=161.31  Aligned_cols=155  Identities=15%  Similarity=0.227  Sum_probs=122.1

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+..++.+ +||  ||+++++++.    .+...++|+||+ +++|.+++.+.  +.++...++.++.|++.||.+||
T Consensus        55 ~~~e~~~l~~l-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~qi~~~l~~lH  125 (272)
T cd06629          55 LRSEIETLKDL-DHL--NIVQYLGFET----TEEYLSIFLEYVPGGSIGSCLRTY--GRFEEQLVRFFTEQVLEGLAYLH  125 (272)
T ss_pred             HHHHHHHHHhc-CCC--CcceEEEEec----cCCceEEEEecCCCCcHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHh
Confidence            34577777777 455  9999999988    567899999999 99999998776  45999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccC---CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD---QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      +. +++|+||+|+||+++.++.  ++++|||.+........   .....++..|++||.+....    ..++.++|+||+
T Consensus       126 ~~-~i~H~dl~~~nil~~~~~~--~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~----~~~~~~~Dv~sl  198 (272)
T cd06629         126 SK-GILHRDLKADNLLVDADGI--CKISDFGISKKSDDIYDNDQNMSMQGSVFWMAPEVIHSYS----QGYSAKVDIWSL  198 (272)
T ss_pred             hC-CeeecCCChhhEEEcCCCe--EEEeeccccccccccccccccccccCCccccCHHHhcccc----CCCCccchhHHH
Confidence            96 9999999999999988766  99999999986543211   11345778899999987322    235779999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCC
Q psy320          162 KMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      |+..+      .+..|..++.
T Consensus       199 G~~l~------~l~~g~~p~~  213 (272)
T cd06629         199 GCVVL------EMFAGRRPWS  213 (272)
T ss_pred             HHHHH------HHHhCCCCCc
Confidence            86322      4445666653

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.91  E-value=6.7e-24  Score=164.23  Aligned_cols=157  Identities=19%  Similarity=0.217  Sum_probs=121.4

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ....+|++.++.+ +|+  ||+++.+.|.    .+...++|+||+.+++.+.+.... ..+++..++.++.|++.|+.||
T Consensus        45 ~~~~~e~~~l~~l-~~~--~i~~~~~~~~----~~~~~~iv~e~~~~~~l~~~~~~~-~~~~~~~~~~~~~~i~~~l~~L  116 (288)
T cd07833          45 KTALREVKVLRQL-RHE--NIVNLKEAFR----RKGRLYLVFEYVERTLLELLEASP-GGLPPDAVRSYIWQLLQAIAYC  116 (288)
T ss_pred             hHHHHHHHHHHhc-CCC--CeeehhheEE----ECCEEEEEEecCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHH
Confidence            3456788888888 455  9999999998    466899999999445444443332 3489999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc--CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH--DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~--~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      |+. +++|+||+|+||+++.++.  ++|+|||.+.......  ......++..|++||.+...     ..++.++|+||+
T Consensus       117 H~~-~i~H~dl~~~ni~~~~~~~--~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~-----~~~~~~~Dv~sl  188 (288)
T cd07833         117 HSH-NIIHRDIKPENILVSESGV--LKLCDFGFARALRARPASPLTDYVATRWYRAPELLVGD-----TNYGKPVDVWAI  188 (288)
T ss_pred             HHC-CeecCCCCHHHeEECCCCC--EEEEeeecccccCCCccccccCcccccCCcCCchhcCC-----CCcCchhhHHHH
Confidence            996 9999999999999998776  9999999988765432  12234567889999998733     146779999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCC
Q psy320          162 KMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      |+.      +..+..|.++|.
T Consensus       189 G~~------l~~l~~g~~~~~  203 (288)
T cd07833         189 GCI------MAELLDGEPLFP  203 (288)
T ss_pred             HHH------HHHHHhCCCCCC
Confidence            863      334555766664

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.91  E-value=8.2e-24  Score=161.47  Aligned_cols=153  Identities=18%  Similarity=0.217  Sum_probs=121.1

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|++.++++ +||  ||+++++.+.    .+...|+++||+ +++|.+++.+..  .+++..+..++.|++.||.|||
T Consensus        40 ~~~e~~~l~~~-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~L~~lH  110 (265)
T cd05579          40 VLTERDILSQA-QSP--YVVKLYYSFQ----GKKNLYLVMEYLPGGDLASLLENVG--SLDEDVARIYIAEIVLALEYLH  110 (265)
T ss_pred             HHHHHHHHHhC-CCc--chhHHHHhee----cCcEEEEEEecCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHH
Confidence            45567777777 455  9999999988    577999999999 889999998754  4899999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccC---------CCCCCCCccchhhHHHHhhhhccCCCCCCC
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD---------QQSSSKTKSKIFCEILEQCRLNQDFRLDPR  155 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~---------~~~~~~~~~~~ape~~~~~~~~~~~~~~~~  155 (202)
                      +. |++|+||+|+||+++.++.  ++|+|||.+........         .....++..|++||.....      ..+.+
T Consensus       111 ~~-~i~H~di~~~nil~~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~------~~~~~  181 (265)
T cd05579         111 SN-GIIHRDLKPDNILIDSNGH--LKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDYIAPEVILGQ------GHSKT  181 (265)
T ss_pred             Hc-CeecCCCCHHHeEEcCCCC--EEEEecccchhcccCcccccccccccccCcccCccccCHHHhcCC------CCCcc
Confidence            96 9999999999999998877  99999999876533211         1133567789999998732      26678


Q ss_pred             cchhhHHHHHHHHHHHHHHHhcCCCCC
Q psy320          156 VDPTSIKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       156 ~Diwsl~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +|+||+|+..+      .+..|..+|.
T Consensus       182 ~Dv~slG~~~~------~l~~g~~p~~  202 (265)
T cd05579         182 VDWWSLGCILY------EFLVGIPPFH  202 (265)
T ss_pred             hhhHHHHHHHH------HHHhCCCCCC
Confidence            99999986322      3444655553

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.91  E-value=1.1e-23  Score=159.99  Aligned_cols=142  Identities=14%  Similarity=0.168  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+++++++ +|+  ||+++++++.    .....++|+||+ +++|.+++.... ..++...+..++.+++.++.+|
T Consensus        38 ~~~~e~~~l~~l-~~~--~i~~~~~~~~----~~~~~~~v~e~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~l~~l  109 (251)
T cd05041          38 KFLQEAEILKQY-DHP--NIVKLIGVCV----QKQPIYIVMELVPGGSLLTFLRKKK-NRLTVKKLLQMSLDAAAGMEYL  109 (251)
T ss_pred             HHHHHHHHHHhC-CCC--CeEEEEEEEe----cCCCeEEEEEcCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHH
Confidence            455688888877 455  9999999998    566899999999 899999986643 3588999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC---CCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ---QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~---~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      |++ +++|+||+|+||+++.++.  ++|+|||.+.........   .....+..|.+||.+...      .++.++|+||
T Consensus       110 H~~-~i~h~di~p~nili~~~~~--~~l~d~g~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~------~~~~~~Di~s  180 (251)
T cd05041         110 ESK-NCIHRDLAARNCLVGENNV--LKISDFGMSREEEGGIYTVSDGLKQIPIKWTAPEALNYG------RYTSESDVWS  180 (251)
T ss_pred             HhC-CEehhhcCcceEEEcCCCc--EEEeeccccccccCCcceeccccCcceeccCChHhhccC------CCCcchhHHH
Confidence            996 9999999999999988776  999999998765421111   112234569999998733      3677999999


Q ss_pred             HHH
Q psy320          161 IKM  163 (202)
Q Consensus       161 l~~  163 (202)
                      +|+
T Consensus       181 lG~  183 (251)
T cd05041         181 YGI  183 (251)
T ss_pred             HHH
Confidence            985

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.91  E-value=2.2e-23  Score=163.37  Aligned_cols=141  Identities=18%  Similarity=0.254  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      ..+|+++++.+ +|+  |++++.+++.    .....++|+||+.+++.+.+.... ..+++..+..++.|++.|+.|||+
T Consensus        62 ~~~e~~~l~~l-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~l~~~~~~~~-~~l~~~~~~~~~~~l~~~l~~LH~  133 (308)
T cd06634          62 IIKEVRFLQKL-RHP--NTIQYRGCYL----REHTAWLVMEYCLGSASDLLEVHK-KPLQEVEIAAVTHGALQGLAYLHS  133 (308)
T ss_pred             HHHHHHHHHhC-CCC--CcccEEEEEE----cCCeeEEEEEccCCCHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHHh
Confidence            34677777777 455  9999999998    467899999999778888776543 458999999999999999999999


Q ss_pred             hCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           86 KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      . +++|+||+|+||+++.++.  ++++|||.+.....   .....++..|++||.+....   ...++.++|+||+|+
T Consensus       134 ~-~i~H~dl~p~nil~~~~~~--~kl~dfg~~~~~~~---~~~~~~~~~y~aPE~~~~~~---~~~~~~~~Di~slG~  202 (308)
T cd06634         134 H-NMIHRDVKAGNILLSEPGL--VKLGDFGSASIMAP---ANXFVGTPYWMAPEVILAMD---EGQYDGKVDVWSLGI  202 (308)
T ss_pred             C-CcccCCCCHHhEEECCCCc--EEECCcccceeecC---cccccCCccccCHHHHhhcc---cCCCCcccchHHHHH
Confidence            5 9999999999999988766  99999999876532   22345778899999986322   233567899999985

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.91  E-value=9.4e-24  Score=164.31  Aligned_cols=154  Identities=18%  Similarity=0.267  Sum_probs=123.2

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+..++.+ +||  ||+++++.|.    .....|+|+||+ +++|.+++.+.   .++...+..++.|++.|+.|||
T Consensus        63 ~~~e~~~l~~l-~hp--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~~---~l~~~~~~~i~~~l~~al~~LH  132 (293)
T cd06647          63 IINEILVMREN-KHP--NIVNYLDSYL----VGDELWVVMEYLAGGSLTDVVTET---CMDEGQIAAVCRECLQALEFLH  132 (293)
T ss_pred             HHHHHHHHhhc-CCC--Ceeehhheee----eCCcEEEEEecCCCCcHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHH
Confidence            45677777777 455  9999999998    456899999999 99999998653   3889999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC-CCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ-QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~-~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      +. |++|+||+|+||+++.++.  ++|+|||.+......... ....++..|++||.+..      ..++.++|+||+|+
T Consensus       133 ~~-gi~H~dL~p~Nili~~~~~--~kL~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~------~~~~~~~Dv~slG~  203 (293)
T cd06647         133 SN-QVIHRDIKSDNILLGMDGS--VKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTR------KAYGPKVDIWSLGI  203 (293)
T ss_pred             hC-CEeeccCCHHHEEEcCCCC--EEEccCcceecccccccccccccCChhhcCchhhcc------CCCCchhhHHHHHH
Confidence            96 9999999999999988776  999999998765433222 23467788999999863      23677999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      ..+      .+..|.++|...
T Consensus       204 ll~------~ll~g~~pf~~~  218 (293)
T cd06647         204 MAI------EMVEGEPPYLNE  218 (293)
T ss_pred             HHH------HHHhCCCCCCCC
Confidence            333      555688887643

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.91  E-value=1e-23  Score=165.04  Aligned_cols=154  Identities=18%  Similarity=0.210  Sum_probs=121.1

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      ..+|++.++.+ +||  ||+++.++|.    .....++|+||+.+++.+++.... +.+++..+..++.|++.||.|||+
T Consensus        62 ~~~Ei~~l~~l-~h~--niv~~~~~~~----~~~~~~lv~e~~~g~l~~~~~~~~-~~l~~~~~~~~~~ql~~~L~~LH~  133 (307)
T cd06607          62 IIKEVRFLQQL-RHP--NTIEYKGCYL----REHTAWLVMEYCLGSASDILEVHK-KPLQEVEIAAICHGALQGLAYLHS  133 (307)
T ss_pred             HHHHHHHHHhC-CCC--CEEEEEEEEE----eCCeEEEEHHhhCCCHHHHHHHcc-cCCCHHHHHHHHHHHHHHHHHHHH
Confidence            45677777877 455  9999999998    466899999999888888776543 458999999999999999999999


Q ss_pred             hCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHH
Q psy320           86 KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYT  165 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~  165 (202)
                      . |++|+||+|+||+++.++.  ++|+|||.+......   ....++..|++||.+....   ...++.++|+||+|+..
T Consensus       134 ~-~i~H~dl~p~nIl~~~~~~--~kL~dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~~---~~~~~~~sDv~s~G~il  204 (307)
T cd06607         134 H-ERIHRDIKAGNILLTEPGT--VKLADFGSASLVSPA---NSFVGTPYWMAPEVILAMD---EGQYDGKVDVWSLGITC  204 (307)
T ss_pred             C-CceecCCCcccEEECCCCC--EEEeecCcceecCCC---CCccCCccccCceeeeccC---CCCCCcccchHHHHHHH
Confidence            5 9999999999999998876  999999998765322   2345777899999875322   23467799999998633


Q ss_pred             HHHHHHHHHHhcCCCCC
Q psy320          166 TFCEILEQCRLNHQDFR  182 (202)
Q Consensus       166 ~~~~~~~~~~~~~~~~~  182 (202)
                      +      .+..|.+++.
T Consensus       205 ~------el~tg~~p~~  215 (307)
T cd06607         205 I------ELAERKPPLF  215 (307)
T ss_pred             H------HHHcCCCCCC
Confidence            2      4445666654

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.91  E-value=1e-23  Score=160.89  Aligned_cols=158  Identities=19%  Similarity=0.200  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK--FQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~--~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ..+|+++++++ +|+  ||+++++.+...  .+...+++|||+ +++|.+++....  .+.+++..++.++.|++.||.+
T Consensus        46 ~~~e~~~l~~l-~~~--~i~~~~~~~~~~--~~~~~~~~~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~  120 (265)
T cd08217          46 LVSEVNILREL-KHP--NIVRYYDRIIDR--SNQTLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYE  120 (265)
T ss_pred             HHHHHHHHHhc-CCC--ccceeeeeeecC--CCCEEEEEehhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHH
Confidence            34577777777 455  999999987632  345789999999 899999987542  3468999999999999999999


Q ss_pred             HH-----hhCCccccCCCCCceeeecCCcceeEEeecccccccccccC-CCCCCCCccchhhHHHHhhhhccCCCCCCCc
Q psy320           83 LH-----TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD-QQSSSKTKSKIFCEILEQCRLNQDFRLDPRV  156 (202)
Q Consensus        83 lh-----~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~-~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~  156 (202)
                      +|     +. +++|+||+|+||+++.++.  ++++|||.+........ .....++..|++||.+...      .++.++
T Consensus       121 lH~~~~~~~-~i~h~dl~p~nili~~~~~--~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~pE~~~~~------~~~~~~  191 (265)
T cd08217         121 CHNRSDPGN-TVLHRDLKPANIFLDANNN--VKLGDFGLAKILGHDSSFAKTYVGTPYYMSPEQLNHM------SYDEKS  191 (265)
T ss_pred             HhcCccccC-cceecCCCHHHEEEecCCC--EEEecccccccccCCcccccccccCCCccChhhhcCC------CCCchh
Confidence            99     84 9999999999999998776  99999999987654332 2234678899999998733      367789


Q ss_pred             chhhHHHHHHHHHHHHHHHhcCCCCCC
Q psy320          157 DPTSIKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       157 Diwsl~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      |+||+|+..      ..+..|..++..
T Consensus       192 Dv~slG~il------~~l~~g~~p~~~  212 (265)
T cd08217         192 DIWSLGCLI------YELCALSPPFTA  212 (265)
T ss_pred             HHHHHHHHH------HHHHHCCCcccC
Confidence            999998632      244556666543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.91  E-value=4.5e-24  Score=161.26  Aligned_cols=128  Identities=13%  Similarity=0.097  Sum_probs=106.8

Q ss_pred             CCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCC
Q psy320           19 HPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPE   97 (202)
Q Consensus        19 ~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~   97 (202)
                      +.||||+++++++.    +....|+||||+ +++|.+++.+..  .+++..+..++.|++.||.|+|++ |++|+||||+
T Consensus        42 ~~~~~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~ql~~~l~~lH~~-~i~H~dlkp~  114 (237)
T cd05576          42 HCVPNMVCLHKYIV----SEDSVFLVLQHAEGGKLWSHISKFL--NIPEECVKRWAAEMVVALDALHRE-GIVCRDLNPN  114 (237)
T ss_pred             cCCCceeehhhhee----cCCeEEEEEecCCCCCHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHhC-CeeccCCCHH
Confidence            33669999999998    567999999999 899999987653  499999999999999999999996 9999999999


Q ss_pred             ceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           98 SIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        98 nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      ||+++.++.  ++++|||.+......  .....++..|++||....      ..++.++|+||+|+
T Consensus       115 Nil~~~~~~--~~l~df~~~~~~~~~--~~~~~~~~~y~aPE~~~~------~~~~~~~DvwslG~  170 (237)
T cd05576         115 NILLDDRGH--IQLTYFSRWSEVEDS--CDGEAVENMYCAPEVGGI------SEETEACDWWSLGA  170 (237)
T ss_pred             HEEEcCCCC--EEEecccchhccccc--cccCCcCccccCCcccCC------CCCCchhhHHHHHH
Confidence            999998877  999999987665422  122345667999998763      33677899999986

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.91  E-value=1.3e-23  Score=160.02  Aligned_cols=145  Identities=20%  Similarity=0.235  Sum_probs=118.6

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++.+ +|+  ||+++++.+.    .....++|+||+ +++|.+++.+.....+++..++.++.|++.||.||
T Consensus        45 ~~~~E~~~l~~~-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l  117 (257)
T cd08225          45 ASKKEVILLAKM-KHP--NIVTFFASFQ----ENGRLFIVMEYCDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHI  117 (257)
T ss_pred             HHHHHHHHHHhC-CCC--Chhhhhheec----cCCeEEEEEecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHH
Confidence            445788888888 455  9999999998    567999999999 99999999776545689999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC-CCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ-QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~-~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |+. +++|+||+|+||+++.++. .++++|||.+......... ....++..|++||....      ..++.++|+||+|
T Consensus       118 h~~-~i~H~dl~~~nil~~~~~~-~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ape~~~~------~~~~~~~Dv~slG  189 (257)
T cd08225         118 HDR-KILHRDIKSQNIFLSKNGM-VAKLGDFGIARQLNDSMELAYTCVGTPYYLSPEICQN------RPYNNKTDIWSLG  189 (257)
T ss_pred             HHC-CcccccCCHHHEEEcCCCC-eEEecccccchhccCCcccccccCCCccccCHHHHcC------CCCCchhhHHHHH
Confidence            995 9999999999999987653 4799999998876533222 12357888999998863      3367799999998


Q ss_pred             HH
Q psy320          163 MY  164 (202)
Q Consensus       163 ~~  164 (202)
                      +.
T Consensus       190 ~i  191 (257)
T cd08225         190 CV  191 (257)
T ss_pred             HH
Confidence            63

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.91  E-value=6.9e-24  Score=163.83  Aligned_cols=157  Identities=23%  Similarity=0.304  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q psy320            7 TNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTK   86 (202)
Q Consensus         7 ~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~   86 (202)
                      .+|+..+.++++|+  ||+++++++.    .+...++||||++++|.+.+.......+++..+..++.|++.+|.|||+.
T Consensus        45 ~~e~~~l~~~~~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~  118 (283)
T cd07830          45 LREVKSLRKLNEHP--NIVKLKEVFR----ENDELYFVFEYMEGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHKH  118 (283)
T ss_pred             HHHHHHHHhccCCC--CchhHHHHhh----cCCcEEEEEecCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHC
Confidence            34666666663355  9999999998    46799999999998999988776545689999999999999999999995


Q ss_pred             CCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHHH
Q psy320           87 HNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTT  166 (202)
Q Consensus        87 ~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~~  166 (202)
                       |++|+||+|+||+++.++.  ++|+|||.+.............++..|++||.+..     ...++.++|+||+|+.  
T Consensus       119 -~i~H~dl~~~ni~i~~~~~--~~l~d~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~-----~~~~~~~~Di~s~G~~--  188 (283)
T cd07830         119 -GFFHRDLKPENLLVSGPEV--VKIADFGLAREIRSRPPYTDYVSTRWYRAPEILLR-----STSYSSPVDIWALGCI--  188 (283)
T ss_pred             -CcccCCCChhhEEEcCCCC--EEEeecccceeccCCCCcCCCCCcccccCceeeec-----CcCcCCccchhhHHHH--
Confidence             9999999999999998776  99999999987654333334567788999998753     2235679999999863  


Q ss_pred             HHHHHHHHHhcCCCCCC
Q psy320          167 FCEILEQCRLNHQDFRP  183 (202)
Q Consensus       167 ~~~~~~~~~~~~~~~~~  183 (202)
                          +..+..|.++|+.
T Consensus       189 ----l~el~~g~~~~~~  201 (283)
T cd07830         189 ----MAELYTLRPLFPG  201 (283)
T ss_pred             ----HHHHHhCCCccCC
Confidence                2244447666643

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.91  E-value=1.2e-23  Score=163.77  Aligned_cols=158  Identities=17%  Similarity=0.265  Sum_probs=119.5

Q ss_pred             HHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhC
Q psy320            8 NLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKH   87 (202)
Q Consensus         8 ~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~   87 (202)
                      +|+..+.+..+  |+||+++++++.    .....|++|||+++++.+++.... +.+++..+..++.|++.|+.|||+..
T Consensus        62 ~e~~~~~~~~~--~~~i~~~~~~~~----~~~~~~~v~e~~~~~l~~l~~~~~-~~l~~~~~~~i~~~i~~~l~~lH~~~  134 (296)
T cd06618          62 MDLDVVLKSHD--CPYIVKCYGYFI----TDSDVFICMELMSTCLDKLLKRIQ-GPIPEDILGKMTVAIVKALHYLKEKH  134 (296)
T ss_pred             HHHHHHHhccC--CCchHhhheeee----cCCeEEEEeeccCcCHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHhhC
Confidence            34544544433  559999999998    566899999999888888876644 46899999999999999999999734


Q ss_pred             CccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHHHH
Q psy320           88 NLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTTF  167 (202)
Q Consensus        88 ~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~~~  167 (202)
                      |++|+||+|+||+++.++.  ++|+|||.+.............++..|++||.+.....  ...++.++|+||+|+..  
T Consensus       135 ~i~H~dl~p~nill~~~~~--~kL~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~--~~~~~~~~Di~slG~il--  208 (296)
T cd06618         135 GVIHRDVKPSNILLDASGN--VKLCDFGISGRLVDSKAKTRSAGCAAYMAPERIDPPDP--NPKYDIRADVWSLGISL--  208 (296)
T ss_pred             CEecCCCcHHHEEEcCCCC--EEECccccchhccCCCcccCCCCCccccCHhhcCCCCC--ccccccchhHHHHHHHH--
Confidence            9999999999999987766  99999999877643333334457778999999863221  23356799999998632  


Q ss_pred             HHHHHHHHhcCCCCC
Q psy320          168 CEILEQCRLNHQDFR  182 (202)
Q Consensus       168 ~~~~~~~~~~~~~~~  182 (202)
                          ..+..|.++|.
T Consensus       209 ----~el~~g~~p~~  219 (296)
T cd06618         209 ----VELATGQFPYK  219 (296)
T ss_pred             ----HHHHhCCCCCC
Confidence                23444666654

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.91  E-value=1.1e-23  Score=166.97  Aligned_cols=158  Identities=20%  Similarity=0.211  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEec-CCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTG-INGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~-~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+.+++.+ +|+  ||+++++++.... ......|+|+||++++|.+++...  +.+++..+..++.|++.||.|||
T Consensus        51 ~~~E~~~l~~l-~h~--ni~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~~~~~--~~l~~~~~~~i~~qi~~aL~~LH  125 (337)
T cd07858          51 TLREIKLLRHL-DHE--NVIAIKDIMPPPHREAFNDVYIVYELMDTDLHQIIRSS--QTLSDDHCQYFLYQLLRGLKYIH  125 (337)
T ss_pred             HHHHHHHHHhc-CCC--CccchHHheecccccccCcEEEEEeCCCCCHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHH
Confidence            44678878877 455  9999999987432 122468999999988999888765  45999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      ++ +++|+||+|+||+++.++.  ++|+|||.+....... ......++..|++||.+...     ..++.++|+||+|+
T Consensus       126 ~~-~i~H~dlkp~Nil~~~~~~--~kL~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-----~~~~~~~DiwslG~  197 (337)
T cd07858         126 SA-NVLHRDLKPSNLLLNANCD--LKICDFGLARTTSEKGDFMTEYVVTRWYRAPELLLNC-----SEYTTAIDVWSVGC  197 (337)
T ss_pred             hC-CEecCCCCHHHEEEcCCCC--EEECcCccccccCCCcccccccccccCccChHHHhcC-----CCCCCcccHHHHHH
Confidence            96 9999999999999988776  9999999998764332 12234577889999998732     23677999999996


Q ss_pred             HHHHHHHHHHHHhcCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~  182 (202)
                      .      +..+..|.++|.
T Consensus       198 i------l~~l~~g~~pf~  210 (337)
T cd07858         198 I------FAELLGRKPLFP  210 (337)
T ss_pred             H------HHHHHcCCCCCC
Confidence            3      224455777764

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.91  E-value=3.2e-23  Score=163.04  Aligned_cols=153  Identities=20%  Similarity=0.236  Sum_probs=119.3

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      ..+|++.++.+ +||  |++++++++.    .+...++||||+.++|.+.+.... .++++..+..++.|++.|+.|||+
T Consensus        72 ~~~e~~~l~~l-~h~--~iv~~~~~~~----~~~~~~lv~e~~~g~l~~~~~~~~-~~l~~~~~~~i~~~i~~~l~~lH~  143 (317)
T cd06635          72 IIKEVKFLQRI-KHP--NSIEYKGCYL----REHTAWLVMEYCLGSASDLLEVHK-KPLQEVEIAAITHGALQGLAYLHS  143 (317)
T ss_pred             HHHHHHHHHhC-CCC--CEEEEEEEEe----eCCeEEEEEeCCCCCHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            44577777777 455  9999999998    466899999999778888776543 458999999999999999999999


Q ss_pred             hCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHH
Q psy320           86 KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYT  165 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~  165 (202)
                      . |++|+||+|+||+++.++.  ++|+|||.+.....   .....++..|++||.+....   ...++.++|+||+|+..
T Consensus       144 ~-~i~H~dL~p~Nil~~~~~~--~kl~dfg~~~~~~~---~~~~~~~~~y~aPE~~~~~~---~~~~~~~~Dv~slGvil  214 (317)
T cd06635         144 H-NMIHRDIKAGNILLTEPGQ--VKLADFGSASIASP---ANSFVGTPYWMAPEVILAMD---EGQYDGKVDVWSLGITC  214 (317)
T ss_pred             C-CcccCCCCcccEEECCCCC--EEEecCCCccccCC---cccccCCccccChhhhhcCC---CCCCCccccHHHHHHHH
Confidence            6 9999999999999988776  99999999875432   22345778899999985322   23367799999998632


Q ss_pred             HHHHHHHHHHhcCCCC
Q psy320          166 TFCEILEQCRLNHQDF  181 (202)
Q Consensus       166 ~~~~~~~~~~~~~~~~  181 (202)
                      +      .+..|.+++
T Consensus       215 ~------el~~g~~p~  224 (317)
T cd06635         215 I------ELAERKPPL  224 (317)
T ss_pred             H------HHHhCCCCC
Confidence            2      444465554

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.91  E-value=1e-23  Score=167.03  Aligned_cols=157  Identities=21%  Similarity=0.253  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecC-CceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGI-NGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~-~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+.+++++ +|+  ||+++++++..... .....|+|+||++++|.+++..   +.+++..++.++.|++.||.+||
T Consensus        50 ~~~E~~~l~~l-~h~--niv~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~---~~l~~~~~~~i~~ql~~aL~~LH  123 (336)
T cd07849          50 TLREIKILRRF-KHE--NIIGILDIIRPPSFESFNDVYIVQELMETDLYKLIKT---QHLSNDHIQYFLYQILRGLKYIH  123 (336)
T ss_pred             HHHHHHHHHhC-CCC--CcCchhheeecccccccceEEEEehhcccCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH
Confidence            45688888888 455  99999998764321 2347899999998899887754   34999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC----CCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ----QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~----~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      +. |++||||||+||+++.++.  ++|+|||.+.........    ....++..|+|||.+..     ...++.++|+||
T Consensus       124 ~~-~ivH~dlkp~Nill~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-----~~~~~~~~Dvws  195 (336)
T cd07849         124 SA-NVLHRDLKPSNLLLNTNCD--LKICDFGLARIADPEHDHTGFLTEYVATRWYRAPEIMLN-----SKGYTKAIDIWS  195 (336)
T ss_pred             hC-CeeccCCCHHHEEECCCCC--EEECcccceeeccccccccCCcCCcCcCCCccChHHhhC-----CCCCCcHHHHHH
Confidence            95 9999999999999998877  999999998875432211    12357888999998752     233567899999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCC
Q psy320          161 IKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       161 l~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +|+..      ..+..|.++|.
T Consensus       196 lGvil------~el~~G~~~f~  211 (336)
T cd07849         196 VGCIL------AEMLSNRPLFP  211 (336)
T ss_pred             HHHHH------HHHHhCCCCCC
Confidence            98632      24555777764

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.91  E-value=1.7e-23  Score=162.18  Aligned_cols=156  Identities=17%  Similarity=0.195  Sum_probs=123.2

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+++++++++||  ||+++++.|.    .+...|+||||+ +++|.+.+...  +.+++..++.++.|++.+|.|||
T Consensus        51 ~~~E~~~l~~~~~~~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~ql~~~l~~lH  122 (288)
T cd05583          51 TRTERQVLEAVRRCP--FLVTLHYAFQ----TDTKLHLILDYVNGGELFTHLYQR--EHFTESEVRVYIAEIVLALDHLH  122 (288)
T ss_pred             HHHHHHHHHhccCCc--chhhhheeee----cCCEEEEEEecCCCCcHHHHHhhc--CCcCHHHHHHHHHHHHHHHHHHH
Confidence            456888888886566  9999999998    567899999999 88999988765  34899999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC--CCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ--QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~--~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      +. +++|+||+|+||+++.++.  ++++|||.+.........  ....++..|++||.+....    ...+.++|+||+|
T Consensus       123 ~~-~~~H~dl~p~nil~~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~----~~~~~~~Dv~slG  195 (288)
T cd05583         123 QL-GIIYRDIKLENILLDSEGH--VVLTDFGLSKEFLAEEEERAYSFCGTIEYMAPEVIRGGS----GGHDKAVDWWSLG  195 (288)
T ss_pred             HC-CeeccCCCHHHeEECCCCC--EEEEECccccccccccccccccccCCccccCHHHhcCCC----CCCcchhhhHHHH
Confidence            96 9999999999999988776  999999998775433221  1235788899999976321    1245689999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +..      ..+..|..++.
T Consensus       196 ~il------~el~tg~~p~~  209 (288)
T cd05583         196 VLT------FELLTGASPFT  209 (288)
T ss_pred             HHH------HHHHhCCCCcc
Confidence            632      24445776664

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.91  E-value=1.6e-23  Score=160.05  Aligned_cols=156  Identities=23%  Similarity=0.315  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|++.+++++ |+  ||+++++.+.    .....++|+||+ +++|.+++...  +.+++..+..++.|++.|+.++
T Consensus        45 ~~~~e~~~l~~l~-~~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~--~~l~~~~~~~~~~~l~~~l~~l  115 (264)
T cd06623          45 QLLRELKTLRSCE-SP--YVVKCYGAFY----KEGEISIVLEYMDGGSLADLLKKV--GKIPEPVLAYIARQILKGLDYL  115 (264)
T ss_pred             HHHHHHHHHHhcC-CC--CeeeEEEEEc----cCCeEEEEEEecCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHH
Confidence            4557788888884 55  9999999998    567999999999 89999999775  4599999999999999999999


Q ss_pred             Hh-hCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC-CCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           84 HT-KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ-SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        84 h~-~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~-~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      |+ . +++|+||+|+||+++.++.  ++|+|||.+.......... ...++..|++||....      ..++.++|+||+
T Consensus       116 h~~~-~~~H~~l~~~ni~~~~~~~--~~l~df~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~------~~~~~~~Dv~sl  186 (264)
T cd06623         116 HTKR-HIIHRDIKPSNLLINSKGE--VKIADFGISKVLENTLDQCNTFVGTVTYMSPERIQG------ESYSYAADIWSL  186 (264)
T ss_pred             hccC-CCccCCCCHHHEEECCCCC--EEEccCccceecccCCCcccceeecccccCHhhhCC------CCCCchhhHHHH
Confidence            99 8 9999999999999988776  9999999988765433222 3456778999998763      246779999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCC
Q psy320          162 KMYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      |+.      +..+..|.+++...
T Consensus       187 G~i------l~~l~tg~~p~~~~  203 (264)
T cd06623         187 GLT------LLECALGKFPFLPP  203 (264)
T ss_pred             HHH------HHHHHhCCCCCccc
Confidence            863      33555577766544

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.91  E-value=1.7e-23  Score=162.91  Aligned_cols=152  Identities=16%  Similarity=0.237  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+..++.+ +|+  ||+++++.|.    .+.+.++||||+ +++|.+++..   +++++..+..++.|++.++.|+|
T Consensus        64 ~~~e~~~l~~l-~h~--~iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~ql~~~l~~lH  133 (292)
T cd06657          64 LFNEVVIMRDY-QHE--NVVEMYNSYL----VGDELWVVMEFLEGGALTDIVTH---TRMNEEQIAAVCLAVLKALSVLH  133 (292)
T ss_pred             HHHHHHHHHhc-CCc--chhheeeEEE----eCCEEEEEEecCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHH
Confidence            45677777777 455  9999999998    467999999999 8899987754   34899999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      +. |++|+||+|+||+++.++.  ++++|||.+....... ......++..|++||.+..      ..++.++|+||+|+
T Consensus       134 ~~-givH~dl~p~Nilv~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~pE~~~~------~~~~~~~Dv~slGv  204 (292)
T cd06657         134 AQ-GVIHRDIKSDSILLTHDGR--VKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISR------LPYGPEVDIWSLGI  204 (292)
T ss_pred             HC-CeecCCCCHHHEEECCCCC--EEEcccccceecccccccccccccCccccCHHHhcC------CCCCchhhHHHHHH
Confidence            96 9999999999999998776  9999999987654321 2223467888999998863      33677999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~  182 (202)
                      ..+      .+..|.++|.
T Consensus       205 il~------el~tg~~p~~  217 (292)
T cd06657         205 MVI------EMVDGEPPYF  217 (292)
T ss_pred             HHH------HHHhCCCCCC
Confidence            322      4445776664

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.91  E-value=2.3e-23  Score=159.32  Aligned_cols=156  Identities=17%  Similarity=0.257  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKF-QPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ..+|++.++.+ +|+  ||+++++.+.    .+...++|+|++ +++|.+++..... ..+++..++.++.|++.|+.+|
T Consensus        46 ~~~e~~~l~~l-~~~--~i~~~~~~~~----~~~~~~iv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~l  118 (267)
T cd06610          46 LRKEVQAMSQC-NHP--NVVKYYTSFV----VGDELWLVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYL  118 (267)
T ss_pred             HHHHHHHHHhc-CCC--CEEEEEEEEe----eCCEEEEEEeccCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHH
Confidence            45677777777 455  9999999988    466899999999 9999999976432 4589999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC-----CCCCCCccchhhHHHHhhhhccCCCCCCCcch
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ-----QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDP  158 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~-----~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Di  158 (202)
                      |+. |++|+||+|+||+++.++.  ++|+|||.+.........     ....++..|++||.+...     ..++.++|+
T Consensus       119 h~~-~i~h~~l~p~ni~~~~~~~--~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~-----~~~~~~~Dv  190 (267)
T cd06610         119 HSN-GQIHRDIKAGNILLGEDGS--VKIADFGVSASLADGGDRTRKVRKTFVGTPCWMAPEVMEQV-----HGYDFKADI  190 (267)
T ss_pred             HhC-CeecCCCCHHhEEEcCCCC--EEEcccchHHHhccCccccccccccccCChhhcChHHHccc-----cCcCcccch
Confidence            995 9999999999999998776  999999998876543222     234678889999998733     135678999


Q ss_pred             hhHHHHHHHHHHHHHHHhcCCCCC
Q psy320          159 TSIKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       159 wsl~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      ||+|+      ++..+..|..+|.
T Consensus       191 ~slG~------i~~~l~~g~~p~~  208 (267)
T cd06610         191 WSFGI------TAIELATGAAPYS  208 (267)
T ss_pred             HhHhH------HHHHHHhCCCCcc
Confidence            99986      3335555777764

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.91  E-value=1.4e-23  Score=166.16  Aligned_cols=154  Identities=25%  Similarity=0.252  Sum_probs=121.0

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      ..+|+++++.+ +|+  ||++++++|.    .+...|+||||+.++|.+++...  ..+++..+..++.|++.||.+||+
T Consensus        67 ~~~E~~~l~~l-~h~--~iv~~~~~~~----~~~~~~lv~e~~~~~l~~~l~~~--~~~~~~~~~~~~~ql~~aL~~LH~  137 (335)
T PTZ00024         67 TLRELKIMNEI-KHE--NIMGLVDVYV----EGDFINLVMDIMASDLKKVVDRK--IRLTESQVKCILLQILNGLNVLHK  137 (335)
T ss_pred             HHHHHHHHHhC-CCc--ceeeeeEEEe----cCCcEEEEEeccccCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHh
Confidence            45788888888 455  9999999998    56799999999988999998765  349999999999999999999999


Q ss_pred             hCCccccCCCCCceeeecCCcceeEEeeccccccccccc---------------CCCCCCCCccchhhHHHHhhhhccCC
Q psy320           86 KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH---------------DQQSSSKTKSKIFCEILEQCRLNQDF  150 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~---------------~~~~~~~~~~~~ape~~~~~~~~~~~  150 (202)
                      . |++|+||+|+||+++.++.  ++|+|||.+.......               ......++..|++||.+..     ..
T Consensus       138 ~-~i~H~dl~~~nill~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-----~~  209 (335)
T PTZ00024        138 W-YFMHRDLSPANIFINSKGI--CKIADFGLARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMG-----AE  209 (335)
T ss_pred             C-CeecccccHHHeEECCCCC--EEECCccceeecccccccccccccccccccccccccccccCCCCChhccc-----CC
Confidence            5 9999999999999988776  9999999987654111               1112345678999998862     22


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHHHhcCCCCC
Q psy320          151 RLDPRVDPTSIKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       151 ~~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      .++.++|+||+|+.      +..+..|.++|.
T Consensus       210 ~~~~~~Dv~slG~~------l~el~tg~~p~~  235 (335)
T PTZ00024        210 KYHFAVDMWSVGCI------FAELLTGKPLFP  235 (335)
T ss_pred             CCCcHHHHHHHHHH------HHHHHhCCCCCC
Confidence            35678999999863      224444666654

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.91  E-value=1.4e-23  Score=162.08  Aligned_cols=143  Identities=13%  Similarity=0.115  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCC------CCCCHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKF------QPAPLVVAKIIVNQILE   78 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~------~~~~~~~~~~~~~qi~~   78 (202)
                      ..+|+..++++ +|+  ||+++++++..   .+...+++++|+ +++|.+++.....      ..++...+..++.|++.
T Consensus        55 ~~~e~~~l~~l-~h~--ni~~~~~~~~~---~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~  128 (280)
T cd05043          55 LLQESCLLYGL-SHQ--NILPILHVCIE---DGEPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIAC  128 (280)
T ss_pred             HHHHHHHHHhC-CCC--CCCeEEEEEec---CCCCCEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHH
Confidence            45677777777 555  99999998774   345788999999 8999999876432      34889999999999999


Q ss_pred             HHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC---CCCCCCccchhhHHHHhhhhccCCCCCCC
Q psy320           79 GLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ---QSSSKTKSKIFCEILEQCRLNQDFRLDPR  155 (202)
Q Consensus        79 ~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~---~~~~~~~~~~ape~~~~~~~~~~~~~~~~  155 (202)
                      ||.|||+. +++|+||+|+||+++.++.  ++++|||+++........   ....++..|++||.+..      ..++.+
T Consensus       129 ~l~~LH~~-~i~H~di~p~nil~~~~~~--~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~------~~~~~~  199 (280)
T cd05043         129 GMSYLHKR-GVIHKDIAARNCVIDEELQ--VKITDNALSRDLFPMDYHCLGDNENRPVKWMALESLVN------KEYSSA  199 (280)
T ss_pred             HHHHHHHC-CEeecccCHhhEEEcCCCc--EEECCCCCcccccCCceEEeCCCCCcchhccCHHHHhc------CCCCch
Confidence            99999996 9999999999999988766  999999999865322111   12345567999999873      336789


Q ss_pred             cchhhHHH
Q psy320          156 VDPTSIKM  163 (202)
Q Consensus       156 ~Diwsl~~  163 (202)
                      +|+||+|+
T Consensus       200 ~Di~slG~  207 (280)
T cd05043         200 SDVWSFGV  207 (280)
T ss_pred             hhHHHhHH
Confidence            99999986

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.91  E-value=2e-23  Score=161.09  Aligned_cols=156  Identities=24%  Similarity=0.288  Sum_probs=124.8

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ...+|++.++++ +|+  ||+++++++.    .+...++|+||+.++|.+++.... +.+++..++.++.|++.||.|||
T Consensus        44 ~~~~e~~~l~~l-~~~--~i~~~~~~~~----~~~~~~~v~e~~~~~l~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~LH  115 (283)
T cd05118          44 TALREIKLLKEL-NHP--NIIKLLDVFR----HKGDLYLVFEFMDTDLYKLIKDRQ-RGLPESLIKSYLYQLLQGLAFCH  115 (283)
T ss_pred             HHHHHHHHHHHh-cCC--CcchHHHhhc----cCCCEEEEEeccCCCHHHHHHhhc-ccCCHHHHHHHHHHHHHHHHHHH
Confidence            455688888888 455  9999999998    567999999999779988887643 45899999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      +. +++|+||+|+||+++.++.  ++++|||.+....... ......++..|++||.+...     ..++.++|+||+|+
T Consensus       116 ~~-~i~H~dl~p~nili~~~~~--~~l~df~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~-----~~~~~~~Di~slG~  187 (283)
T cd05118         116 SH-GILHRDLKPENLLINTEGV--LKLADFGLARSFGSPVRPYTHYVVTRWYRAPELLLGD-----KGYSTPVDIWSVGC  187 (283)
T ss_pred             HC-CeeecCcCHHHEEECCCCc--EEEeeeeeeEecCCCcccccCccCcccccCcHHHhcC-----CCCCchhHHHHHHH
Confidence            96 9999999999999998776  9999999998765433 22234577789999998732     24677999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~  182 (202)
                      .      +..+..|.++|.
T Consensus       188 ~------l~~l~tg~~~~~  200 (283)
T cd05118         188 I------FAELLSRRPLFP  200 (283)
T ss_pred             H------HHHHHhCCCCCC
Confidence            3      224445766664

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.91  E-value=1.8e-23  Score=165.78  Aligned_cols=156  Identities=25%  Similarity=0.295  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      ..+|+..++++++||  ||++++++|...  ++...|+||||+.++|.+++...   .+++..++.++.|++.||.|||+
T Consensus        53 ~~~E~~~l~~l~~h~--ni~~~~~~~~~~--~~~~~~lv~e~~~~~L~~~~~~~---~~~~~~~~~i~~qi~~~L~~LH~  125 (337)
T cd07852          53 TFREIMFLQELGDHP--NIVKLLNVIKAE--NDKDIYLVFEYMETDLHAVIRAN---ILEDVHKRYIMYQLLKALKYIHS  125 (337)
T ss_pred             hhHHHHHHHHhcCCC--CccceeeeeccC--CCceEEEEecccccCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHH
Confidence            346888888885555  999999998632  24578999999988999888654   48889999999999999999999


Q ss_pred             hCCccccCCCCCceeeecCCcceeEEeecccccccccccCC------CCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           86 KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ------QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~------~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      . |++|+||+|+||+++.++.  ++|+|||.+.........      ....++..|++||.+..     ...++.++|+|
T Consensus       126 ~-~i~H~dl~p~nill~~~~~--~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-----~~~~~~~sDi~  197 (337)
T cd07852         126 G-NVIHRDLKPSNILLNSDCR--VKLADFGLARSLSELEENPENPVLTDYVATRWYRAPEILLG-----STRYTKGVDMW  197 (337)
T ss_pred             C-CeecCCCCHHHEEEcCCCc--EEEeeccchhccccccccccCcchhcccccccccCceeeec-----cccccccchHH
Confidence            5 9999999999999998877  999999999876432211      12357888999998752     22356789999


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCC
Q psy320          160 SIKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       160 sl~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      |+|+.      +..+..|.++|.
T Consensus       198 slG~~------l~el~tg~~pf~  214 (337)
T cd07852         198 SVGCI------LGEMLLGKPLFP  214 (337)
T ss_pred             HHHHH------HHHHHhCCCCCC
Confidence            99863      224555777775

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.91  E-value=2.1e-23  Score=163.05  Aligned_cols=160  Identities=21%  Similarity=0.196  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEec----CCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTG----INGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGL   80 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~----~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l   80 (202)
                      ...+|++.++.+ +||  ||+++++++....    ......++|++|+.+++...+.... ..+++..++.++.|++.||
T Consensus        53 ~~~~e~~~l~~l-~h~--~i~~~~~~~~~~~~~~~~~~~~~~lv~~~~~~~l~~~~~~~~-~~~~~~~~~~i~~~l~~al  128 (311)
T cd07866          53 TALREIKILKKL-KHP--NVVPLIDMAVERPDKSKRKRGSVYMVTPYMDHDLSGLLENPS-VKLTESQIKCYMLQLLEGI  128 (311)
T ss_pred             hHHHHHHHHHhc-CCC--CccchhhheecccccccccCceEEEEEecCCcCHHHHHhccc-cCCCHHHHHHHHHHHHHHH
Confidence            456788888888 555  9999999886432    1245789999999888888776533 4599999999999999999


Q ss_pred             HHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC------------CCCCCccchhhHHHHhhhhcc
Q psy320           81 NHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ------------SSSKTKSKIFCEILEQCRLNQ  148 (202)
Q Consensus        81 ~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~------------~~~~~~~~~ape~~~~~~~~~  148 (202)
                      .|||+. |++|+||+|+||+++.++.  ++|+|||.+..........            ...+++.|++||.+..     
T Consensus       129 ~~lH~~-~i~H~dl~p~nil~~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-----  200 (311)
T cd07866         129 NYLHEN-HILHRDIKAANILIDNQGI--LKIADFGLARPYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLG-----  200 (311)
T ss_pred             HHHHhC-CeecCCCCHHHEEECCCCC--EEECcCccchhccCCCcccccCCcccccccccceeccCcCChHHhhC-----
Confidence            999996 9999999999999998876  9999999998654322111            1245677999999863     


Q ss_pred             CCCCCCCcchhhHHHHHHHHHHHHHHHhcCCCCC
Q psy320          149 DFRLDPRVDPTSIKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       149 ~~~~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      ...++.++|+||+|+..      ..+..|.++|.
T Consensus       201 ~~~~~~~~Dv~slG~il------~el~~g~~~~~  228 (311)
T cd07866         201 ERRYTTAVDIWGIGCVF------AEMFTRRPILQ  228 (311)
T ss_pred             CCccCchhHhHHHHHHH------HHHHhCCCCCC
Confidence            23367789999998632      24445666654

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.91  E-value=4.1e-23  Score=159.96  Aligned_cols=142  Identities=22%  Similarity=0.336  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|++.++.+ +|+  ||+++++.|.    .....|+|+||+ +++|.+++.... ..++...+..++.|++.||.+|
T Consensus        61 ~~~~e~~~l~~l-~~~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~-~~l~~~~~~~i~~~i~~~L~~l  132 (286)
T cd06614          61 LIINEILIMKDC-KHP--NIVDYYDSYL----VGDELWVVMEYMDGGSLTDIITQNF-VRMNEPQIAYVCREVLQGLEYL  132 (286)
T ss_pred             HHHHHHHHHHHC-CCC--CeeEEEEEEE----ECCEEEEEEeccCCCcHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHH
Confidence            456788888888 455  9999999998    457999999999 799999998764 3599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC-CCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ-QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~-~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |+. |++|+||+|+||+++.++.  ++|+|||.+......... ....++..|++||.+..      ..++.++|+||+|
T Consensus       133 H~~-gi~H~dl~p~ni~i~~~~~--~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~------~~~~~~~Dv~slG  203 (286)
T cd06614         133 HSQ-NVIHRDIKSDNILLSKDGS--VKLADFGFAAQLTKEKSKRNSVVGTPYWMAPEVIKR------KDYGPKVDIWSLG  203 (286)
T ss_pred             HhC-CeeeCCCChhhEEEcCCCC--EEECccchhhhhccchhhhccccCCcccCCHhHhcC------CCCCCccccHHHH
Confidence            996 9999999999999998776  999999998765432211 23356778999998863      3367899999998


Q ss_pred             H
Q psy320          163 M  163 (202)
Q Consensus       163 ~  163 (202)
                      +
T Consensus       204 v  204 (286)
T cd06614         204 I  204 (286)
T ss_pred             H
Confidence            6

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.91  E-value=3.8e-23  Score=158.00  Aligned_cols=158  Identities=21%  Similarity=0.230  Sum_probs=124.2

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+.+++.+ +|+  ||+++++.+.    .....++|+||+ +++|.+++...  +.+++..++.++.|++.|+.||
T Consensus        45 ~~~~e~~~~~~l-~~~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~i~~~i~~~l~~l  115 (264)
T cd06626          45 EIADEMKVLELL-KHP--NLVKYYGVEV----HREKVYIFMEYCSGGTLEELLEHG--RILDEHVIRVYTLQLLEGLAYL  115 (264)
T ss_pred             HHHHHHHHHHhC-CCC--ChhheeeeEe----cCCEEEEEEecCCCCcHHHHHhhc--CCCChHHHHHHHHHHHHHHHHH
Confidence            445678888888 455  9999999987    567899999999 89999998765  3488999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC-----CCCCCccchhhHHHHhhhhccCCCCCCCcch
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ-----SSSKTKSKIFCEILEQCRLNQDFRLDPRVDP  158 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~-----~~~~~~~~~ape~~~~~~~~~~~~~~~~~Di  158 (202)
                      |+. |++|+||+|+||+++.++.  ++|+|||.+..........     ...++..|++||.+....   ...++.++|+
T Consensus       116 h~~-~i~H~dl~~~nil~~~~~~--~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~---~~~~~~~~Dv  189 (264)
T cd06626         116 HSH-GIVHRDIKPANIFLDHNGV--IKLGDFGCAVKLKNNTTTMGEEVQSLAGTPAYMAPEVITGGK---GKGHGRAADI  189 (264)
T ss_pred             HHC-CcccCCCCHHHEEECCCCC--EEEcccccccccCCCCCcccccccCCcCCcCccChhhccCCC---CCCCCcccch
Confidence            995 9999999999999998776  9999999988764322211     235677899999987322   2235679999


Q ss_pred             hhHHHHHHHHHHHHHHHhcCCCCCC
Q psy320          159 TSIKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       159 wsl~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      ||+|+.      +..+..|..+|..
T Consensus       190 ~s~G~i------l~~l~~g~~pf~~  208 (264)
T cd06626         190 WSLGCV------VLEMATGKRPWSE  208 (264)
T ss_pred             HHHHHH------HHHHHhCCCCccC
Confidence            999863      2244457777643

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.91  E-value=5.5e-23  Score=161.47  Aligned_cols=154  Identities=19%  Similarity=0.233  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      ..+|++.++.+ +||  |++++++++.    +....|+||||+.+++.+++.... ..+++..+..++.|++.++.|||+
T Consensus        68 ~~~E~~~l~~l-~h~--~iv~~~~~~~----~~~~~~lv~e~~~~~l~~~l~~~~-~~l~~~~~~~~~~qi~~al~~LH~  139 (313)
T cd06633          68 IIKEVKFLQQL-KHP--NTIEYKGCYL----KEHTAWLVMEYCLGSASDLLEVHK-KPLQEVEIAAITHGALQGLAYLHS  139 (313)
T ss_pred             HHHHHHHHHhC-CCC--CCccEEEEEE----eCCEEEEEEecCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            34677777777 455  9999999998    467899999999778888876543 458999999999999999999999


Q ss_pred             hCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHH
Q psy320           86 KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYT  165 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~  165 (202)
                      . |++|+||+|+||+++.++.  ++|+|||.+....   ......++..|++||.+....   ...++.++|+||+|+..
T Consensus       140 ~-gi~H~dl~p~nili~~~~~--~kL~dfg~~~~~~---~~~~~~~~~~y~aPE~~~~~~---~~~~~~~sDv~slGvil  210 (313)
T cd06633         140 H-NMIHRDIKAGNILLTEPGQ--VKLADFGSASKSS---PANSFVGTPYWMAPEVILAMD---EGQYDGKVDVWSLGITC  210 (313)
T ss_pred             C-CeecCCCChhhEEECCCCC--EEEeecCCCcccC---CCCCccccccccChhhccccC---CCCCCchhhHHHHHHHH
Confidence            6 9999999999999988776  9999999986532   122346778899999985321   23366789999998632


Q ss_pred             HHHHHHHHHHhcCCCCC
Q psy320          166 TFCEILEQCRLNHQDFR  182 (202)
Q Consensus       166 ~~~~~~~~~~~~~~~~~  182 (202)
                      +      .+..|.+++.
T Consensus       211 ~------el~~g~~p~~  221 (313)
T cd06633         211 I------ELAERKPPLF  221 (313)
T ss_pred             H------HHHhCCCCCC
Confidence            2      4455766654

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.91  E-value=4.1e-23  Score=157.06  Aligned_cols=154  Identities=19%  Similarity=0.270  Sum_probs=123.1

Q ss_pred             HHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHHH
Q psy320            7 TNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK--FQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         7 ~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~--~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+|++.++.+ +|+  ||+++.+++.    .+...++|+||+ +++|.+++.+..  ...+++..++.++.|++.||.+|
T Consensus        47 ~~e~~~l~~l-~~~--~i~~~~~~~~----~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~l  119 (256)
T cd08530          47 VNEIRILASV-NHP--NIISYKEAFL----DGNKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQAL  119 (256)
T ss_pred             HHHHHHHHhC-CCC--Cchhhhhhhc----cCCEEEEEehhcCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            4577777777 455  9999999998    567999999999 999999886632  24589999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |+. |++|+||+|+||+++.++.  ++|+|||.+...... ......++..|++||.+..      ..++.++|+||+|+
T Consensus       120 h~~-~i~h~~l~~~ni~~~~~~~--~kl~d~g~~~~~~~~-~~~~~~~~~~~~~Pe~~~~------~~~~~~~D~~slG~  189 (256)
T cd08530         120 HEQ-KILHRDLKSANILLVANDL--VKIGDLGISKVLKKN-MAKTQIGTPHYMAPEVWKG------RPYSYKSDIWSLGC  189 (256)
T ss_pred             hhC-CcccCCCCcceEEEecCCc--EEEeeccchhhhccC-CcccccCCccccCHHHHCC------CCCCchhhHHHHHH
Confidence            996 9999999999999998766  999999999876543 2223567788999999873      34677899999986


Q ss_pred             HHHHHHHHHHHHhcCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~  183 (202)
                      ..+      .+..|..+|..
T Consensus       190 ~~~------~l~~g~~p~~~  203 (256)
T cd08530         190 LLY------EMATFAPPFEA  203 (256)
T ss_pred             HHH------HHHhCCCCCCC
Confidence            332      44457766653

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.91  E-value=2.8e-23  Score=165.13  Aligned_cols=157  Identities=18%  Similarity=0.220  Sum_probs=122.7

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecC--CceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGI--NGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~--~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ..+|+++++.+ +||  ||++++++|.....  .....|+||+|++++|.+++..   +.+++..++.++.|++.||.||
T Consensus        61 ~~~E~~~l~~l-~h~--~iv~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~---~~l~~~~~~~i~~qi~~al~~L  134 (343)
T cd07880          61 AYRELRLLKHM-KHE--NVIGLLDVFTPDLSLDRFHDFYLVMPFMGTDLGKLMKH---EKLSEDRIQFLVYQMLKGLKYI  134 (343)
T ss_pred             HHHHHHHHHhc-CCC--CccceeeeecCCccccccceEEEEEecCCCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHH
Confidence            45788888888 555  99999999874321  1236799999999999988764   3499999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |+. |++|+||+|+||+++.++.  ++++|||.+.....  ......++..|++||.+..     ...++.++|+||+|+
T Consensus       135 H~~-gi~H~dlkp~Nill~~~~~--~kl~dfg~~~~~~~--~~~~~~~~~~y~aPE~~~~-----~~~~~~~~Di~slG~  204 (343)
T cd07880         135 HAA-GIIHRDLKPGNLAVNEDCE--LKILDFGLARQTDS--EMTGYVVTRWYRAPEVILN-----WMHYTQTVDIWSVGC  204 (343)
T ss_pred             HhC-CeecCCCCHHHEEEcCCCC--EEEeeccccccccc--CccccccCCcccCHHHHhC-----CCCCCcHHHHHHHHH
Confidence            995 9999999999999998776  99999999886532  1223456788999999862     123567899999986


Q ss_pred             HHHHHHHHHHHHhcCCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      ..+      .+..|.++|...
T Consensus       205 ll~------~l~~g~~pf~~~  219 (343)
T cd07880         205 IMA------EMLTGKPLFKGH  219 (343)
T ss_pred             HHH------HHHhCCCCCCCC
Confidence            322      455587777643

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.91  E-value=3.3e-23  Score=161.51  Aligned_cols=160  Identities=21%  Similarity=0.161  Sum_probs=121.3

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEec------CCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTG------INGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILE   78 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~------~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~   78 (202)
                      ...+|+++++++ +||  ||+++++++....      ......|+|+||+++++.+.+.... ..+++..+..++.|++.
T Consensus        52 ~~~~e~~~~~~l-~h~--~i~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~l~~~~-~~~~~~~~~~i~~qi~~  127 (302)
T cd07864          52 TAIREIKILRQL-NHR--NIVNLKEIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGL-VHFSEDHIKSFMKQLLE  127 (302)
T ss_pred             HHHHHHHHHHhC-CCC--CeeeeeheecCcchhhhccccCCcEEEEEcccCccHHHHHhcCC-CCCCHHHHHHHHHHHHH
Confidence            345688888888 555  9999999987422      0123899999999778888776542 45899999999999999


Q ss_pred             HHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC-C-CCCCCCccchhhHHHHhhhhccCCCCCCCc
Q psy320           79 GLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD-Q-QSSSKTKSKIFCEILEQCRLNQDFRLDPRV  156 (202)
Q Consensus        79 ~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~-~-~~~~~~~~~~ape~~~~~~~~~~~~~~~~~  156 (202)
                      ||.|||+. |++|+||+|+||+++.++.  ++|+|||.+........ . ....++..|++||.+..     ...++.++
T Consensus       128 aL~~LH~~-~i~H~dl~p~nili~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~-----~~~~~~~~  199 (302)
T cd07864         128 GLNYCHKK-NFLHRDIKCSNILLNNKGQ--IKLADFGLARLYNSEESRPYTNKVITLWYRPPELLLG-----EERYGPAI  199 (302)
T ss_pred             HHHHHHhC-CeecCCCCHHHEEECCCCc--EEeCcccccccccCCcccccccceeccCccChHHhcC-----CCCCCchh
Confidence            99999996 9999999999999988776  99999999987643221 1 12245668999998862     22356789


Q ss_pred             chhhHHHHHHHHHHHHHHHhcCCCCC
Q psy320          157 DPTSIKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       157 Diwsl~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      |+||+|+..+      .+..|.++|.
T Consensus       200 Di~slG~~~~------el~~g~~~~~  219 (302)
T cd07864         200 DVWSCGCILG------ELFTKKPIFQ  219 (302)
T ss_pred             HHHHHHHHHH------HHHhCCCCCC
Confidence            9999986322      3444666664

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.91  E-value=2.1e-23  Score=159.38  Aligned_cols=141  Identities=18%  Similarity=0.229  Sum_probs=112.6

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHc--CCCCCCHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQ--KFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~--~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +.+|+.+++.+ +||  ||+++++++.    .....++|+||+ +++|.+++...  ..+.+++..++.++.|++.|+.|
T Consensus        49 ~~~e~~~l~~l-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  121 (260)
T cd08222          49 ANQEAQLLSKL-DHP--AIVKFHASFL----ERDAFCIITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHY  121 (260)
T ss_pred             HHHHHHHHHhC-CCC--cHHHHHHHHh----cCCceEEEEEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHH
Confidence            34566777777 455  9999999998    466899999999 89999888642  23458999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC-CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD-QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~-~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      ||+. |++|+||+|+||+++. +.  ++++|||.+........ .....++..|++||....      ..++.++|+||+
T Consensus       122 lH~~-~i~h~~l~~~nili~~-~~--~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~pe~~~~------~~~~~~~Dv~sl  191 (260)
T cd08222         122 MHQR-RILHRDLKAKNIFLKN-NL--LKIGDFGVSRLLMGSCDLATTFTGTPYYMSPEALKH------QGYDSKSDIWSL  191 (260)
T ss_pred             HHHc-CccccCCChhheEeec-CC--EeecccCceeecCCCcccccCCCCCcCccCHHHHcc------CCCCchhhHHHH
Confidence            9996 9999999999999974 33  99999999887643222 223457788999998863      336678999999


Q ss_pred             HH
Q psy320          162 KM  163 (202)
Q Consensus       162 ~~  163 (202)
                      |+
T Consensus       192 G~  193 (260)
T cd08222         192 GC  193 (260)
T ss_pred             HH
Confidence            85

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.90  E-value=6.5e-23  Score=155.16  Aligned_cols=156  Identities=17%  Similarity=0.260  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|++.++.+. |+  +|+++.+.+.    .....++++||+ +++|.+++.... +.+++..+..++.|++.++.+|
T Consensus        43 ~~~~e~~~l~~l~-~~--~i~~~~~~~~----~~~~~~l~~e~~~~~~L~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~l  114 (253)
T cd05122          43 KIINEIQILKKCK-HP--NIVKYYGSYL----KKDELWIVMEFCSGGSLKDLLKSTN-QTLTESQIAYVCKELLKGLEYL  114 (253)
T ss_pred             HHHHHHHHHHhCC-CC--CEeEEEEEEe----cCCeEEEEEecCCCCcHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHHh
Confidence            4556788777774 55  9999999998    456899999999 799999987653 4589999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |.. |++|+||+|+||+++.++.  ++|+|||.+.............++..|++||.+....      ++.++|+||+|+
T Consensus       115 h~~-~i~h~dl~p~ni~i~~~~~--~~l~d~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~------~~~~~Dv~slG~  185 (253)
T cd05122         115 HSN-GIIHRDIKAANILLTSDGE--VKLIDFGLSAQLSDTKARNTMVGTPYWMAPEVINGKP------YDYKADIWSLGI  185 (253)
T ss_pred             hcC-CEecCCCCHHHEEEccCCe--EEEeeccccccccccccccceecCCcccCHHHHcCCC------CCccccHHHHHH
Confidence            995 9999999999999998766  9999999998765432223456778899999987332      677999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~  183 (202)
                      .      +..+..|..++..
T Consensus       186 i------l~~l~~g~~p~~~  199 (253)
T cd05122         186 T------AIELAEGKPPYSE  199 (253)
T ss_pred             H------HHHHHhCCCCCCC
Confidence            3      3355557666653

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.90  E-value=5.8e-23  Score=163.42  Aligned_cols=156  Identities=21%  Similarity=0.256  Sum_probs=120.9

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecC--CceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGI--NGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~--~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ..+|+..++++ +||  ||+++++++.....  .....|+++++++++|.+++...   .+++..++.++.|++.||.||
T Consensus        63 ~~~Ei~~l~~l-~h~--~iv~~~~~~~~~~~~~~~~~~~lv~~~~~~~L~~~~~~~---~l~~~~~~~i~~qi~~aL~~L  136 (345)
T cd07877          63 TYRELRLLKHM-KHE--NVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRGLKYI  136 (345)
T ss_pred             HHHHHHHHHHc-CCC--cccceeeeeeecccccccccEEEEehhcccCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHH
Confidence            44677777777 455  99999999874321  22468899999999998887543   499999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |+. |++|+||+|+||+++.++.  ++|+|||.+.....  ......++..|+|||.+..     ...++.++|+||+|+
T Consensus       137 H~~-~ivH~dlkp~NIll~~~~~--~kl~dfg~~~~~~~--~~~~~~~~~~y~aPE~~~~-----~~~~~~~~DvwslG~  206 (345)
T cd07877         137 HSA-DIIHRDLKPSNLAVNEDCE--LKILDFGLARHTDD--EMTGYVATRWYRAPEIMLN-----WMHYNQTVDIWSVGC  206 (345)
T ss_pred             HHC-CeeecCCChHHEEEcCCCC--EEEecccccccccc--cccccccCCCccCHHHHhC-----ccCCCchhhHHHHHH
Confidence            996 9999999999999998876  99999999876532  2223457788999999862     233677899999996


Q ss_pred             HHHHHHHHHHHHhcCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~  183 (202)
                      ..      ..+..|.++|..
T Consensus       207 il------~el~~g~~pf~~  220 (345)
T cd07877         207 IM------AELLTGRTLFPG  220 (345)
T ss_pred             HH------HHHHhCCCCCCC
Confidence            32      244558777743

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.90  E-value=2.4e-23  Score=165.45  Aligned_cols=159  Identities=19%  Similarity=0.243  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCC----------ceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGIN----------GTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVN   74 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~----------~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~   74 (202)
                      ...+|+++++.+ +||  ||+++++++...+..          ....|+|+||++++|.+++..   +.+++..++.++.
T Consensus        48 ~~~~Ei~~l~~l-~h~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~~~~---~~l~~~~~~~~~~  121 (342)
T cd07854          48 HALREIKIIRRL-DHD--NIVKVYEVLGPSGSDLTEDVGSLTELNSVYIVQEYMETDLANVLEQ---GPLSEEHARLFMY  121 (342)
T ss_pred             HHHHHHHHHHhc-CCC--cchhhHhhhcccccccccccccccccceEEEEeecccccHHHHHHc---CCCCHHHHHHHHH
Confidence            356788888888 565  999999887753311          136899999998899888754   3499999999999


Q ss_pred             HHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC----CCCCCCCccchhhHHHHhhhhccCC
Q psy320           75 QILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD----QQSSSKTKSKIFCEILEQCRLNQDF  150 (202)
Q Consensus        75 qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~----~~~~~~~~~~~ape~~~~~~~~~~~  150 (202)
                      |++.||.|||+. |++|+||||+||+++.++. .++++|||.+........    .....++..|+|||.+..     ..
T Consensus       122 qi~~aL~~LH~~-givH~dikp~Nili~~~~~-~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-----~~  194 (342)
T cd07854         122 QLLRGLKYIHSA-NVLHRDLKPANVFINTEDL-VLKIGDFGLARIVDPHYSHKGYLSEGLVTKWYRSPRLLLS-----PN  194 (342)
T ss_pred             HHHHHHHHHHhC-CcccCCCCHHHEEEcCCCc-eEEECCcccceecCCccccccccccccccccccCHHHHhC-----cc
Confidence            999999999995 9999999999999985542 489999999876532211    112356778999998752     23


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHHHhcCCCCC
Q psy320          151 RLDPRVDPTSIKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       151 ~~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      .++.++|+||+|+..      ..+..|.++|.
T Consensus       195 ~~~~~~DiwSlGvil------~el~~g~~pf~  220 (342)
T cd07854         195 NYTKAIDMWAAGCIF------AEMLTGKPLFA  220 (342)
T ss_pred             ccCchhhHHHHHHHH------HHHHhCCCCCC
Confidence            366799999998632      24445776664

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.90  E-value=1.1e-23  Score=166.44  Aligned_cols=161  Identities=21%  Similarity=0.223  Sum_probs=126.8

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEec-CCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTG-INGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~-~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+..++.+ +|+  ||+++.+++.... ......|++|+|++++|.+++.+..  .+++..++.++.|++.||.+|
T Consensus        45 ~~~~e~~~l~~l-~~~--~i~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~l~~~~--~l~~~~~~~i~~~l~~~l~~L  119 (330)
T cd07834          45 RILREIKLLRHL-RHE--NIIGLLDILRPPSPEDFNDVYIVTELMETDLHKVIKSPQ--PLTDDHIQYFLYQILRGLKYL  119 (330)
T ss_pred             hHHHHHHHHHhc-CCc--chhhhhhhhcccCcccccceEEEecchhhhHHHHHhCCC--CCCHHHHHHHHHHHHHHHHHH
Confidence            456688888888 455  9999999988532 1234789999999889998886653  599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc----CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH----DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~----~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      |+. |++|+||||+||+++.++.  ++|+|||.+.......    ......++..|++||.+...     ..++.++|+|
T Consensus       120 H~~-gi~H~dlkp~nili~~~~~--~~L~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-----~~~~~~sDi~  191 (330)
T cd07834         120 HSA-NVIHRDLKPSNILVNSNCD--LKICDFGLARGVDPDEDEKGFLTEYVVTRWYRAPELLLSS-----SRYTKAIDIW  191 (330)
T ss_pred             HhC-CeecCCCCHHHEEEcCCCC--EEEcccCceEeecccccccccccccccccCcCCceeeecc-----cCCCcchhHH
Confidence            996 9999999999999998876  9999999998865432    12234577889999998743     1467799999


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCCCC
Q psy320          160 SIKMYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       160 sl~~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      |+|+.      +..+..|.++|...
T Consensus       192 slG~i------l~~l~~g~~pf~~~  210 (330)
T cd07834         192 SVGCI------FAELLTRKPLFPGR  210 (330)
T ss_pred             HHHHH------HHHHHcCCCCcCCC
Confidence            99873      33556677777543

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.90  E-value=6.2e-23  Score=155.91  Aligned_cols=156  Identities=21%  Similarity=0.257  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK--FQPAPLVVAKIIVNQILEGLN   81 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~--~~~~~~~~~~~~~~qi~~~l~   81 (202)
                      ...+|++.++.+ +|+  |++++.+.+.    .+...++|+|++ +++|.+.+.+..  .+.+++..+..++.+++.|+.
T Consensus        45 ~~~~e~~~l~~l-~~~--~~~~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~  117 (258)
T cd08215          45 DALNEVKILKKL-NHP--NIIKYYESFE----EKGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALK  117 (258)
T ss_pred             HHHHHHHHHHhc-CCC--ChhheEEEEe----cCCEEEEEEEecCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHH
Confidence            345678888888 455  9999999998    457999999999 889999987653  356999999999999999999


Q ss_pred             HHHhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           82 HLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        82 ~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      +||+. |++|+||+|+||+++.++.  ++|+|||.+....... ......+++.|++||....      ..++.++|+||
T Consensus       118 ~lh~~-~~~H~dl~~~nil~~~~~~--~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~------~~~~~~~Dv~s  188 (258)
T cd08215         118 YLHSR-KILHRDIKPQNIFLTSNGL--VKLGDFGISKVLSSTVDLAKTVVGTPYYLSPELCQN------KPYNYKSDIWS  188 (258)
T ss_pred             HHHhC-CEecccCChHHeEEcCCCc--EEECCccceeecccCcceecceeeeecccChhHhcc------CCCCccccHHH
Confidence            99996 9999999999999998776  9999999998765433 1223467888999998763      33677999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCC
Q psy320          161 IKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       161 l~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +|+..      ..+..|..++.
T Consensus       189 lG~~~------~~l~~g~~p~~  204 (258)
T cd08215         189 LGCVL------YELCTLKHPFE  204 (258)
T ss_pred             HHHHH------HHHHcCCCCCC
Confidence            98632      23444666654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.90  E-value=2.5e-23  Score=160.77  Aligned_cols=158  Identities=24%  Similarity=0.270  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ...+|+++++++ +|+  |++++++++...+  ....++|+||++++|.+++.... ..+++..++.++.|++.|+.+||
T Consensus        44 ~~~~e~~~l~~l-~~~--~i~~~~~~~~~~~--~~~~~lv~e~~~~~l~~~~~~~~-~~~~~~~~~~i~~~i~~al~~LH  117 (287)
T cd07840          44 TAIREIKLLQKL-RHP--NIVRLKEIVTSKG--KGSIYMVFEYMDHDLTGLLDSPE-VKFTESQIKCYMKQLLEGLQYLH  117 (287)
T ss_pred             HHHHHHHHHHhc-cCC--CeeeheeeEecCC--CCcEEEEeccccccHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHH
Confidence            345688888888 455  9999999998421  36899999999779999886653 35999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccC--CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD--QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~--~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      +. |++|+||+|+||+++.++.  ++++|||.+........  .....++..|++||.+..     ...++.++|+||+|
T Consensus       118 ~~-~~~h~dl~p~nil~~~~~~--~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~-----~~~~~~~~Dv~slG  189 (287)
T cd07840         118 SN-GILHRDIKGSNILINNDGV--LKLADFGLARPYTKRNSADYTNRVITLWYRPPELLLG-----ATRYGPEVDMWSVG  189 (287)
T ss_pred             HC-CceeccCcHHHeEEcCCCC--EEEccccceeeccCCCcccccccccccccCCceeeEc-----cccCChHHHHHHHH
Confidence            96 9999999999999998877  99999999987654321  123456778999997652     22356799999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +..+      .+..|.+++.
T Consensus       190 ~~l~------el~t~~~p~~  203 (287)
T cd07840         190 CILA------ELFLGKPIFQ  203 (287)
T ss_pred             HHHH------HHHhCCCCCC
Confidence            6322      3444555553

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.90  E-value=7.5e-23  Score=155.34  Aligned_cols=154  Identities=21%  Similarity=0.279  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++++ +|+  |++++.+++.    ++...++++||+ +++|.+++...  +.+++..+..++.|++.++.++
T Consensus        45 ~~~~e~~~l~~l-~~~--~i~~~~~~~~----~~~~~~~v~e~~~~~~L~~~~~~~--~~l~~~~~~~~~~~i~~~l~~l  115 (254)
T cd06627          45 SIMQEIDLLKNL-KHP--NIVKYIGSIE----TSDSLYIILEYAENGSLRQIIKKF--GPFPESLVAVYVYQVLQGLAYL  115 (254)
T ss_pred             HHHHHHHHHHhC-CCC--CccEEEEEEE----eCCEEEEEEecCCCCcHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHH
Confidence            345677777877 455  9999999998    466899999999 88999998776  4599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC-CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD-QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~-~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |+. |++|+||+|+||+++.++.  ++|+|||.+........ .....++..|++||.....      .++.++|+||+|
T Consensus       116 H~~-~i~H~dl~p~ni~i~~~~~--~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~------~~~~~~Dv~~lG  186 (254)
T cd06627         116 HEQ-GVIHRDIKAANILTTKDGV--VKLADFGVATKLNDVSKDDASVVGTPYWMAPEVIEMS------GASTASDIWSLG  186 (254)
T ss_pred             hhC-CcccCCCCHHHEEECCCCC--EEEeccccceecCCCcccccccccchhhcCHhhhcCC------CCCcchhHHHHH
Confidence            996 9999999999999998766  99999999987654322 1235678889999998732      267789999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +..      ..+..|.+++.
T Consensus       187 ~~l------~~l~~g~~p~~  200 (254)
T cd06627         187 CTV------IELLTGNPPYY  200 (254)
T ss_pred             HHH------HHHHhCCCCCC
Confidence            632      23444665553

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.90  E-value=5.1e-23  Score=158.79  Aligned_cols=152  Identities=16%  Similarity=0.227  Sum_probs=119.7

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      +.+|++.+.++ +||  ||++++++|.    .+...|+||||+ +++|.+++..   +.++...+..++.|++.++.+||
T Consensus        49 ~~~e~~~l~~l-~h~--~iv~~~~~~~----~~~~~~lv~e~~~~~~l~~~i~~---~~~~~~~~~~~~~~l~~~l~~lh  118 (277)
T cd06641          49 IQQEITVLSQC-DSP--YVTKYYGSYL----KDTKLWIIMEYLGGGSALDLLEP---GPLDETQIATILREILKGLDYLH  118 (277)
T ss_pred             HHHHHHHHHhc-CCC--CEeEEEEEEE----eCCeEEEEEEeCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHHHc
Confidence            44677777777 454  9999999998    566899999999 8899988864   34899999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      +. |++|+||+|+||+++.++.  ++++|||.+....... ......++..|++||.+..      ...+.++|+||+|+
T Consensus       119 ~~-~i~h~dl~p~Ni~i~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~------~~~~~~~Dv~slG~  189 (277)
T cd06641         119 SE-KKIHRDIKAANVLLSEHGE--VKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQ------SAYDSKADIWSLGI  189 (277)
T ss_pred             cC-CeecCCCCHHhEEECCCCC--EEEeecccceecccchhhhccccCCccccChhhhcc------CCCCchhhHHHHHH
Confidence            96 9999999999999988776  9999999987654321 1123457778999998863      23567899999986


Q ss_pred             HHHHHHHHHHHHhcCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~  182 (202)
                      .      +..+..|.+++.
T Consensus       190 ~------l~~l~~g~~p~~  202 (277)
T cd06641         190 T------AIELAKGEPPHS  202 (277)
T ss_pred             H------HHHHHcCCCCCC
Confidence            3      224445666654

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.90  E-value=3.6e-23  Score=159.76  Aligned_cols=145  Identities=16%  Similarity=0.243  Sum_probs=116.5

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ..+.+|++.++.+ +|+  ||+++++++...  .+...++||||+ +++|.+++.... ..++...+..++.|++.||.|
T Consensus        51 ~~~~~ei~~l~~l-~~~--~i~~~~~~~~~~--~~~~~~lv~e~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~l~~aL~~  124 (284)
T cd05038          51 SDFEREIEILRTL-DHE--NIVKYKGVCEKP--GGRSLRLIMEYLPSGSLRDYLQRHR-DQINLKRLLLFSSQICKGMDY  124 (284)
T ss_pred             HHHHHHHHHHHhC-CCC--ChheEEeeeecC--CCCceEEEEecCCCCCHHHHHHhCc-cccCHHHHHHHHHHHHHHHHH
Confidence            3466788888888 555  999999988732  256899999999 899999997654 358999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC----CCCCCCccchhhHHHHhhhhccCCCCCCCcch
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ----QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDP  158 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~----~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Di  158 (202)
                      ||++ |++|+||+|+||+++.++.  ++++|||.+.........    .....+..|.+||.....      .++.++|+
T Consensus       125 lH~~-~i~H~dl~p~nil~~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~------~~~~~~Di  195 (284)
T cd05038         125 LGSQ-RYIHRDLAARNILVESEDL--VKISDFGLAKVLPEDKDYYYVKEPGESPIFWYAPECLRTS------KFSSASDV  195 (284)
T ss_pred             HHhC-CeecCCCCHHhEEEcCCCC--EEEcccccccccccCCcceeccCCCCCcccccCcHHHccC------CCCcccch
Confidence            9996 9999999999999998766  999999999876532111    122344568999988733      36778999


Q ss_pred             hhHHH
Q psy320          159 TSIKM  163 (202)
Q Consensus       159 wsl~~  163 (202)
                      ||+|+
T Consensus       196 ~slG~  200 (284)
T cd05038         196 WSFGV  200 (284)
T ss_pred             HHHhh
Confidence            99986

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.90  E-value=9.2e-23  Score=154.91  Aligned_cols=159  Identities=19%  Similarity=0.210  Sum_probs=127.8

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|++.++++ +|+  ||+++++.+....  ....++++||+ +++|.+++....  .+++..+..++.|++.++.||
T Consensus        45 ~~~~e~~~l~~l-~~~--~i~~~~~~~~~~~--~~~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~l~~~l~~l  117 (260)
T cd06606          45 ALEREIRILSSL-QHP--NIVRYYGSERDEE--KNTLNIFLEYVSGGSLSSLLKKFG--KLPEPVIRKYTRQILEGLAYL  117 (260)
T ss_pred             HHHHHHHHHHHc-CCC--CEeeEEEEEecCC--CCeEEEEEEecCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHH
Confidence            345688888888 455  9999999998421  26899999999 999999987764  599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC---CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD---QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      |+. |++|+|++|+||+++.++.  ++|+|||.+........   .....++..|.+||......      .+.++|+||
T Consensus       118 h~~-~~~h~dl~p~ni~i~~~~~--~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~------~~~~~Dv~s  188 (260)
T cd06606         118 HSN-GIVHRDIKGANILVDSDGV--VKLADFGCAKRLGDIETGEGTGSVRGTPYWMAPEVIRGEE------YGRAADIWS  188 (260)
T ss_pred             HHC-CccccCCCHHHEEEcCCCC--EEEcccccEEecccccccccccCCCCCccccCHhhhcCCC------CCchhhHHH
Confidence            995 9999999999999998776  99999999988765432   33456888999999987433      667999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCC
Q psy320          161 IKMYTTFCEILEQCRLNHQDFRPDP  185 (202)
Q Consensus       161 l~~~~~~~~~~~~~~~~~~~~~~~~  185 (202)
                      +|+.      +..+..|..++....
T Consensus       189 lG~i------l~~l~~g~~p~~~~~  207 (260)
T cd06606         189 LGCT------VIEMATGKPPWSELG  207 (260)
T ss_pred             HHHH------HHHHHhCCCCCCCCC
Confidence            9873      335555777775543

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.90  E-value=8.8e-23  Score=154.80  Aligned_cols=154  Identities=21%  Similarity=0.198  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++++ +|+  ||+++++.+.    .+...|+||||+ +++|.+++....  .+++..+..++.|++.|+.++
T Consensus        39 ~~~~e~~~l~~l-~h~--~i~~~~~~~~----~~~~~~~v~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~~l~~l  109 (250)
T cd05123          39 HTLTERNILSRI-NHP--FIVKLHYAFQ----TEEKLYLVLEYAPGGELFSHLSKEG--RFSEERARFYAAEIVLALEYL  109 (250)
T ss_pred             HHHHHHHHHHHc-CCC--cHHHHHHHee----cCCeeEEEEecCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHH
Confidence            456678888888 455  9999999998    577999999999 999999997763  489999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |+. +++|+||+|+||+++.++.  ++++|||.+....... ......++..|++||.....      ..+.++|+||+|
T Consensus       110 h~~-~~~H~~l~p~ni~~~~~~~--~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~------~~~~~~D~~slG  180 (250)
T cd05123         110 HSL-GIIYRDLKPENILLDADGH--IKLTDFGLAKELSSEGSRTNTFCGTPEYLAPEVLLGK------GYGKAVDWWSLG  180 (250)
T ss_pred             HHC-CceecCCCcceEEEcCCCc--EEEeecCcceecccCCCcccCCcCCccccChHHhCCC------CCCchhhHHHHH
Confidence            995 9999999999999998876  9999999988764321 22245677889999998732      356789999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +.      +..+..|..+|.
T Consensus       181 ~~------~~~l~~g~~p~~  194 (250)
T cd05123         181 VL------LYEMLTGKPPFY  194 (250)
T ss_pred             HH------HHHHHHCCCCCC
Confidence            63      224444666653

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.90  E-value=7.9e-23  Score=157.69  Aligned_cols=157  Identities=25%  Similarity=0.259  Sum_probs=124.6

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ...+|+..++++ +|+  ||+++++++.    .....++|+||++++|.+++.+.. ..+++..+..++.|++.||.+||
T Consensus        44 ~~~~e~~~l~~~-~~~--~i~~~~~~~~----~~~~~~~v~e~~~~~l~~~i~~~~-~~~~~~~~~~~~~~i~~~l~~LH  115 (282)
T cd07829          44 TALREISLLKEL-KHP--NIVKLLDVIH----TERKLYLVFEYCDMDLKKYLDKRP-GPLSPNLIKSIMYQLLRGLAYCH  115 (282)
T ss_pred             HHHHHHHHHHhc-CCC--CHHHHHhhhh----cCCceEEEecCcCcCHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHHH
Confidence            345688888888 455  9999999998    467999999999889999998763 34999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC-CCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ-QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~-~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      +. |++|+||+|+||+++.++.  ++|+|||.+......... .....+..|++||.+...     ..++.++|+||+|+
T Consensus       116 ~~-~i~H~~l~~~ni~~~~~~~--~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~-----~~~~~~~Dv~slG~  187 (282)
T cd07829         116 SH-RILHRDLKPQNILINRDGV--LKLADFGLARAFGIPLRTYTHEVVTLWYRAPEILLGS-----KHYSTAVDIWSVGC  187 (282)
T ss_pred             HC-CcccCCCChheEEEcCCCC--EEEecCCcccccCCCccccCccccCcCcCChHHhcCC-----cCCCccccHHHHHH
Confidence            96 9999999999999998776  999999999876543222 233456789999998622     24677999999987


Q ss_pred             HHHHHHHHHHHHhcCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~  183 (202)
                      ..+      .+..|.++|..
T Consensus       188 ~l~------~l~~~~~~~~~  201 (282)
T cd07829         188 IFA------EMITGKPLFPG  201 (282)
T ss_pred             HHH------HHHhCCCCCCC
Confidence            333      45556666643

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.90  E-value=4.1e-23  Score=163.20  Aligned_cols=153  Identities=20%  Similarity=0.248  Sum_probs=120.4

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ...+|+++++.+ +||  ||+++.++|..   .+...|+++||++++|.+++...   ++++..+..++.|++.||.|||
T Consensus        55 ~~~~E~~~l~~l-~hp--niv~~~~~~~~---~~~~~~lv~e~~~~~L~~~~~~~---~~~~~~~~~~~~ql~~aL~~LH  125 (328)
T cd07856          55 RTYRELKLLKHL-RHE--NIISLSDIFIS---PLEDIYFVTELLGTDLHRLLTSR---PLEKQFIQYFLYQILRGLKYVH  125 (328)
T ss_pred             HHHHHHHHHHhc-CCC--CeeeEeeeEec---CCCcEEEEeehhccCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHH
Confidence            445788888888 455  99999999873   34578999999988999887643   4889999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~  164 (202)
                      +. |++|+||+|+||+++.++.  ++|+|||.+.....  ......++..|++||.+..     ...++.++|+||+|+.
T Consensus       126 ~~-~iiH~dl~p~Nili~~~~~--~~l~dfg~~~~~~~--~~~~~~~~~~y~aPE~~~~-----~~~~~~~~Dv~slG~i  195 (328)
T cd07856         126 SA-GVVHRDLKPSNILINENCD--LKICDFGLARIQDP--QMTGYVSTRYYRAPEIMLT-----WQKYDVEVDIWSAGCI  195 (328)
T ss_pred             hC-CcccCCCCHHHEeECCCCC--EEeCccccccccCC--CcCCCcccccccCceeeec-----cCCcCcHHHHHHHHHH
Confidence            96 9999999999999988776  99999999876532  1123456778999998752     1336779999999863


Q ss_pred             HHHHHHHHHHHhcCCCCC
Q psy320          165 TTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~  182 (202)
                            +..+..|.++|.
T Consensus       196 ------l~el~tg~~~f~  207 (328)
T cd07856         196 ------FAEMLEGKPLFP  207 (328)
T ss_pred             ------HHHHHhCCCCCC
Confidence                  334555777764

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.90  E-value=1.1e-22  Score=156.31  Aligned_cols=146  Identities=14%  Similarity=0.161  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCc--eEEEEEEccc-cccHHHHHHHcC----CCCCCHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGING--THVCTVTEIM-AECLCNYMIRQK----FQPAPLVVAKIIVNQILE   78 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~--~~~~lv~e~~-~~sL~~~~~~~~----~~~~~~~~~~~~~~qi~~   78 (202)
                      +.+|+++++++ +||  ||+++++++......+  ...+++++|+ +++|.+++....    ...++...++.++.|++.
T Consensus        48 ~~~E~~~l~~l-~h~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~  124 (273)
T cd05074          48 FLREAACMKEF-DHP--NVIKLIGVSLRSRAKGRLPIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIAS  124 (273)
T ss_pred             HHHHHHHHhcC-CCC--CcceEEEEEccCCCCCcccceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHH
Confidence            45678888888 455  9999999987432111  2457889999 899988775322    124788999999999999


Q ss_pred             HHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC---CCCCCCCccchhhHHHHhhhhccCCCCCCC
Q psy320           79 GLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD---QQSSSKTKSKIFCEILEQCRLNQDFRLDPR  155 (202)
Q Consensus        79 ~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~ape~~~~~~~~~~~~~~~~  155 (202)
                      |+.|||++ |++|+||||+||+++.++.  ++++|||.++.......   .....+++.|++||.+..      ..++.+
T Consensus       125 ~l~~lH~~-~i~H~dikp~nili~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~------~~~~~~  195 (273)
T cd05074         125 GMEYLSSK-NFIHRDLAARNCMLNENMT--VCVADFGLSKKIYSGDYYRQGCASKLPVKWLALESLAD------NVYTTH  195 (273)
T ss_pred             HHHHHHhC-CEeecccchhhEEEcCCCC--EEECcccccccccCCcceecCCCccCchhhcCHhHHhc------Cccchh
Confidence            99999996 9999999999999987766  99999999887543211   112234567899998873      336779


Q ss_pred             cchhhHHH
Q psy320          156 VDPTSIKM  163 (202)
Q Consensus       156 ~Diwsl~~  163 (202)
                      +|+||+|+
T Consensus       196 sDi~slG~  203 (273)
T cd05074         196 SDVWAFGV  203 (273)
T ss_pred             hhhHHHHH
Confidence            99999985

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>KOG0664|consensus

Probab=99.90  E-value=2.2e-25  Score=165.49  Aligned_cols=147  Identities=25%  Similarity=0.295  Sum_probs=116.7

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecC-CceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGI-NGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~-~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +...+|+++|..+ +|.  ||+..++..+.... --..+|.++|.|..+|.+.+-.-  ..++.+.++-+++||+.||+|
T Consensus        97 krvFre~kmLcfF-kHd--NVLSaLDILQPph~dfFqEiYV~TELmQSDLHKIIVSP--Q~Ls~DHvKVFlYQILRGLKY  171 (449)
T KOG0664|consen   97 KRVFREIKMLSSF-RHD--NVLSLLDILQPANPSFFQELYVLTELMQSDLHKIIVSP--QALTPDHVKVFVYQILRGLKY  171 (449)
T ss_pred             HHHHHHHHHHHhh-ccc--cHHHHHHhcCCCCchHHHHHHHHHHHHHhhhhheeccC--CCCCcchhhhhHHHHHhhhHH
Confidence            3455788888888 455  99999988763111 11367788898888998887554  459999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC--CCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ--SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~--~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      ||+ +||+||||||.|.|++++..  +|+||||+++.........  ....|-+|.|||++.     +.+.|+.++||||
T Consensus       172 LHs-A~ILHRDIKPGNLLVNSNCv--LKICDFGLARvee~d~~~hMTqEVVTQYYRAPEiLM-----GaRhYs~AvDiWS  243 (449)
T KOG0664|consen  172 LHT-ANILHRDIKPGNLLVNSNCI--LKICDFGLARTWDQRDRLNMTHEVVTQYYRAPELLM-----GARRYTGAVDIWS  243 (449)
T ss_pred             Hhh-cchhhccCCCccEEeccCce--EEecccccccccchhhhhhhHHHHHHHHhccHHHhh-----cchhhcCccceeh
Confidence            999 69999999999999998766  9999999999875432222  235667899999998     3567899999999


Q ss_pred             HHH
Q psy320          161 IKM  163 (202)
Q Consensus       161 l~~  163 (202)
                      .|+
T Consensus       244 VGC  246 (449)
T KOG0664|consen  244 VGC  246 (449)
T ss_pred             hhH
Confidence            975

>KOG4257|consensus

Probab=99.90  E-value=2.6e-23  Score=168.95  Aligned_cols=147  Identities=18%  Similarity=0.216  Sum_probs=121.2

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +.+..|..+++.+ +||  ||+++.|+|.     ..-.|+|||.+ -|.|..++..+. ..++......++.|+..||.|
T Consensus       436 ekflqEa~iMrnf-dHp--hIikLIGv~~-----e~P~WivmEL~~~GELr~yLq~nk-~sL~l~tL~ly~~Qi~talaY  506 (974)
T KOG4257|consen  436 EKFLQEASIMRNF-DHP--HIIKLIGVCV-----EQPMWIVMELAPLGELREYLQQNK-DSLPLRTLTLYCYQICTALAY  506 (974)
T ss_pred             HHHHHHHHHHHhC-CCc--chhheeeeee-----ccceeEEEecccchhHHHHHHhcc-ccchHHHHHHHHHHHHHHHHH
Confidence            4567788777777 565  9999999998     44689999999 899999998765 569999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCC--CCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSS--SKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~--~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      ||++ ++|||||...|||+.+..  ++||+|||+++...........  .-...|++||.+-+..      ++.++|+|-
T Consensus       507 LeSk-rfVHRDIAaRNiLVsSp~--CVKLaDFGLSR~~ed~~yYkaS~~kLPIKWmaPESINfRr------FTtASDVWM  577 (974)
T KOG4257|consen  507 LESK-RFVHRDIAARNILVSSPQ--CVKLADFGLSRYLEDDAYYKASRGKLPIKWMAPESINFRR------FTTASDVWM  577 (974)
T ss_pred             HHhh-chhhhhhhhhheeecCcc--eeeecccchhhhccccchhhccccccceeecCccccchhc------ccchhhHHH
Confidence            9998 999999999999998765  4999999999988654433322  3344799999998544      888999999


Q ss_pred             HH--HHHHHH
Q psy320          161 IK--MYTTFC  168 (202)
Q Consensus       161 l~--~~~~~~  168 (202)
                      +|  +|+.+.
T Consensus       578 FgVCmWEIl~  587 (974)
T KOG4257|consen  578 FGVCMWEILS  587 (974)
T ss_pred             HHHHHHHHHH
Confidence            85  566654

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.90  E-value=6.7e-23  Score=157.82  Aligned_cols=155  Identities=21%  Similarity=0.259  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+++++++.+|+  ||+++++++.    .+...++|||++ +++|.+++.+..  .+++..++.++.|++.||.+||
T Consensus        48 ~~~e~~~~~~l~~~~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~--~l~~~~~~~i~~ql~~~l~~Lh  119 (280)
T cd05581          48 VKIEKEVLTRLNGHP--GIIKLYYTFQ----DEENLYFVLEYAPNGELLQYIRKYG--SLDEKCTRFYAAEILLALEYLH  119 (280)
T ss_pred             HHHHHHHHHhcccCC--CchhHHHHhc----CCceEEEEEcCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHH
Confidence            345677777774355  9999999998    567999999999 999999998764  5999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC---------------------CCCCCCccchhhHHHHh
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ---------------------QSSSKTKSKIFCEILEQ  143 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~---------------------~~~~~~~~~~ape~~~~  143 (202)
                      +. |++|+||+|+||+++.++.  ++++|||.+.........                     ....++..|++||....
T Consensus       120 ~~-~~~H~dl~~~ni~i~~~~~--~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~  196 (280)
T cd05581         120 SK-GIIHRDLKPENILLDKDMH--IKITDFGTAKVLDPNSSPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLNE  196 (280)
T ss_pred             HC-CeeecCCCHHHeEECCCCC--EEecCCccccccCCccccccCCCCCccccccccccccccccccCCccccCHHHhCC
Confidence            95 9999999999999998776  999999998876432211                     12356778999998773


Q ss_pred             hhhccCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCC
Q psy320          144 CRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       144 ~~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                            ..++.++|+||+|+..+      .+..|..++..
T Consensus       197 ------~~~~~~~Di~slG~~l~------~l~~g~~p~~~  224 (280)
T cd05581         197 ------KPAGKSSDLWALGCIIY------QMLTGKPPFRG  224 (280)
T ss_pred             ------CCCChhhhHHHHHHHHH------HHHhCCCCCCC
Confidence                  22667899999986322      34447666653

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>KOG3653|consensus

Probab=99.90  E-value=2.5e-23  Score=163.87  Aligned_cols=167  Identities=18%  Similarity=0.202  Sum_probs=127.3

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+++|-.+-... ...|+||++++++-......+..++||++|. .|||.++++.+.   .+.....+++..|+.||.||
T Consensus       248 s~~~Ek~Iy~lp-~m~h~nIl~Fi~~ekr~t~~~~eywLVt~fh~kGsL~dyL~~nt---isw~~~cria~SmarGLa~L  323 (534)
T KOG3653|consen  248 SFQNEKNIYSLP-GMKHENILQFIGAEKRGTADRMEYWLVTEFHPKGSLCDYLKANT---ISWNSLCRIAESMARGLAHL  323 (534)
T ss_pred             HHHhHHHHHhcc-CccchhHHHhhchhccCCccccceeEEeeeccCCcHHHHHHhcc---ccHHHHHHHHHHHHHHHHHh
Confidence            344554444443 2236699999998774332356999999999 999999999876   89999999999999999999


Q ss_pred             Hhh--------CCccccCCCCCceeeecCCcceeEEeecccccccccccCCC---CCCCCccchhhHHHHhhhhccCCCC
Q psy320           84 HTK--------HNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ---SSSKTKSKIFCEILEQCRLNQDFRL  152 (202)
Q Consensus        84 h~~--------~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~---~~~~~~~~~ape~~~~~~~~~~~~~  152 (202)
                      |..        ..|+|||||+.|||+..|..  ..|+|||+|..+.......   ...||..|||||++.+..-..+..-
T Consensus       324 Hee~p~~d~~Kp~IaHRDlkSkNVLvK~DlT--ccIaDFGLAl~~~p~~~~~d~~~qVGT~RYMAPEvLEgainl~d~~A  401 (534)
T KOG3653|consen  324 HEELPRGDHHKPPIAHRDLKSKNVLVKNDLT--CCIADFGLALRLEPGKPQGDTHGQVGTRRYMAPEVLEGAINLQDRDA  401 (534)
T ss_pred             cccCCcCCCCCCccccccccccceEEccCCc--EEeeccceeEEecCCCCCcchhhhhhhhhhcCHHHHhhhcccccHHH
Confidence            974        35999999999999999988  9999999999887432222   4689999999999996652221111


Q ss_pred             CCCcchhhHHHHHHHHHHHHHHHhcCC
Q psy320          153 DPRVDPTSIKMYTTFCEILEQCRLNHQ  179 (202)
Q Consensus       153 ~~~~Diwsl~~~~~~~~~~~~~~~~~~  179 (202)
                      -.+.|+||+|+..+  +++..|...++
T Consensus       402 fkr~DvYamgLVLW--Ei~SRC~~~~~  426 (534)
T KOG3653|consen  402 FKRIDVYAMGLVLW--EIASRCTDADP  426 (534)
T ss_pred             HHHHHHHHHHHHHH--HHHhhcccccC
Confidence            13899999986444  67777765543

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.90  E-value=6.4e-23  Score=163.01  Aligned_cols=156  Identities=21%  Similarity=0.241  Sum_probs=122.2

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecC--CceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGI--NGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~--~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ..+|+.+++.+ +||  ||+++.+++.....  .....++|+||++++|.+++..   .++++..++.++.|++.||.||
T Consensus        61 ~~~E~~~l~~l-~h~--~iv~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~~~~---~~l~~~~~~~~~~ql~~aL~~L  134 (343)
T cd07851          61 TYRELRLLKHM-DHE--NVIGLLDVFTPASSLEDFQDVYLVTHLMGADLNNIVKC---QKLSDDHIQFLVYQILRGLKYI  134 (343)
T ss_pred             HHHHHHHHHhc-cCC--CHHHHHHHhhccccccccccEEEEEecCCCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHHH
Confidence            44688888887 555  99999998874321  2245899999999999998865   3499999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |+. |++|+||+|+||+++.++.  ++|+|||.+......  .....++..|++||.+..     ...++.++|+||+|+
T Consensus       135 H~~-gi~H~dlkp~Nill~~~~~--~kL~dfg~~~~~~~~--~~~~~~~~~y~aPE~~~~-----~~~~~~~~DvwslGv  204 (343)
T cd07851         135 HSA-GIIHRDLKPSNIAVNEDCE--LKILDFGLARHTDDE--MTGYVATRWYRAPEIMLN-----WMHYNQTVDIWSVGC  204 (343)
T ss_pred             HHC-CeecCCCCHHHeEECCCCC--EEEcccccccccccc--ccCCcccccccCHHHHhC-----CCCCCchHhHHHHHH
Confidence            995 9999999999999998776  999999999876422  223456778999999862     123567899999987


Q ss_pred             HHHHHHHHHHHHhcCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~  183 (202)
                      ..      ..+..|.++|..
T Consensus       205 ~l------~elltg~~pf~~  218 (343)
T cd07851         205 IM------AELLTGKTLFPG  218 (343)
T ss_pred             HH------HHHHhCCCCCCC
Confidence            32      245558777753

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>KOG0196|consensus

Probab=99.89  E-value=2.6e-24  Score=178.04  Aligned_cols=144  Identities=13%  Similarity=0.167  Sum_probs=120.8

Q ss_pred             chHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Q psy320            3 TNYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLN   81 (202)
Q Consensus         3 ~~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~   81 (202)
                      +..|+.|+.++-++ +||  ||++|-|+..    ..+-..+|+||| +|+|+.+++.+. +.|..-+...+++.|+.||+
T Consensus       674 rrdFL~EAsIMGQF-dHP--NIIrLEGVVT----ks~PvMIiTEyMENGsLDsFLR~~D-GqftviQLVgMLrGIAsGMk  745 (996)
T KOG0196|consen  674 RRDFLSEASIMGQF-DHP--NIIRLEGVVT----KSKPVMIITEYMENGSLDSFLRQND-GQFTVIQLVGMLRGIASGMK  745 (996)
T ss_pred             HhhhhhhhhhcccC-CCC--cEEEEEEEEe----cCceeEEEhhhhhCCcHHHHHhhcC-CceEeehHHHHHHHHHHHhH
Confidence            45677888888888 666  9999999998    566788999999 999999999887 45999999999999999999


Q ss_pred             HHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC--CCCC--CCccchhhHHHHhhhhccCCCCCCCcc
Q psy320           82 HLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ--QSSS--KTKSKIFCEILEQCRLNQDFRLDPRVD  157 (202)
Q Consensus        82 ~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~--~~~~--~~~~~~ape~~~~~~~~~~~~~~~~~D  157 (202)
                      ||.+ +|+|||||...|||++++..  +|++|||+++........  ....  -...|.|||.+.+..      ++.++|
T Consensus       746 YLsd-m~YVHRDLAARNILVNsnLv--CKVsDFGLSRvledd~~~~ytt~GGKIPiRWTAPEAIa~RK------FTsASD  816 (996)
T KOG0196|consen  746 YLSD-MNYVHRDLAARNILVNSNLV--CKVSDFGLSRVLEDDPEAAYTTLGGKIPIRWTAPEAIAYRK------FTSASD  816 (996)
T ss_pred             HHhh-cCchhhhhhhhheeeccceE--EEeccccceeecccCCCccccccCCccceeecChhHhhhcc------cCchhh
Confidence            9999 59999999999999999876  999999999977543311  1222  224799999999554      889999


Q ss_pred             hhhHHH
Q psy320          158 PTSIKM  163 (202)
Q Consensus       158 iwsl~~  163 (202)
                      +||+|+
T Consensus       817 VWSyGI  822 (996)
T KOG0196|consen  817 VWSYGI  822 (996)
T ss_pred             ccccce
Confidence            999975

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.89  E-value=1.6e-22  Score=160.71  Aligned_cols=155  Identities=19%  Similarity=0.218  Sum_probs=119.6

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecC--CceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGI--NGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~--~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ..+|+++++.+ +||  ||++++++|.....  .....|+|+||+..+|.+...    ..+++..+..++.|++.||.||
T Consensus        61 ~~~e~~~l~~l-~h~--niv~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~----~~~~~~~~~~~~~qi~~aL~~L  133 (342)
T cd07879          61 AYRELTLLKHM-QHE--NVIGLLDVFTSAVSGDEFQDFYLVMPYMQTDLQKIMG----HPLSEDKVQYLVYQMLCGLKYI  133 (342)
T ss_pred             HHHHHHHHHhc-CCC--CccchhheecccccCCCCceEEEEecccccCHHHHHc----CCCCHHHHHHHHHHHHHHHHHH
Confidence            45788888887 555  99999999875321  234679999999778876642    2489999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |+. |++||||+|+||+++.++.  ++|+|||.++....  ......++..|++||.+..     ...++.++|+||+|+
T Consensus       134 H~~-~i~H~dlkp~NIll~~~~~--~kL~dfg~~~~~~~--~~~~~~~~~~y~aPE~~~~-----~~~~~~~~Dv~slGv  203 (342)
T cd07879         134 HSA-GIIHRDLKPGNLAVNEDCE--LKILDFGLARHADA--EMTGYVVTRWYRAPEVILN-----WMHYNQTVDIWSVGC  203 (342)
T ss_pred             HHC-CcccCCCCHHHEEECCCCC--EEEeeCCCCcCCCC--CCCCceeeecccChhhhcC-----ccccCchHHHHHHHH
Confidence            996 9999999999999998776  99999999876532  1223456778999999863     123677999999987


Q ss_pred             HHHHHHHHHHHHhcCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~  183 (202)
                      ..+      .+..|..+|..
T Consensus       204 il~------el~~g~~pf~~  217 (342)
T cd07879         204 IMA------EMLTGKTLFKG  217 (342)
T ss_pred             HHH------HHHhCCCCCCC
Confidence            332      45557777754

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>KOG2052|consensus

Probab=99.89  E-value=1.2e-22  Score=159.20  Aligned_cols=151  Identities=17%  Similarity=0.223  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHh-cCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            7 TNLIKTLIEIQ-KHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         7 ~~e~~~l~~l~-~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      .+|.++-+... +  |+||+.+.+.-.-+..+-.++|||++|- .|||++++.+..   +....+..++..+++||.+||
T Consensus       251 frEtEIYqTvmLR--HENILgFIaaD~~~~gs~TQLwLvTdYHe~GSL~DyL~r~t---v~~~~ml~LalS~AsGLaHLH  325 (513)
T KOG2052|consen  251 FRETEIYQTVMLR--HENILGFIAADNKDNGSWTQLWLVTDYHEHGSLYDYLNRNT---VTTEGMLKLALSIASGLAHLH  325 (513)
T ss_pred             hhHHHHHHHHHhc--cchhhhhhhccccCCCceEEEEEeeecccCCcHHHHHhhcc---CCHHHHHHHHHHHhhhHHHHH
Confidence            45666666542 4  4599999888654333446999999999 999999999865   999999999999999999999


Q ss_pred             hh-------CCccccCCCCCceeeecCCcceeEEeecccccccccccC-----CCCCCCCccchhhHHHHhhhhccCCCC
Q psy320           85 TK-------HNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD-----QQSSSKTKSKIFCEILEQCRLNQDFRL  152 (202)
Q Consensus        85 ~~-------~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~-----~~~~~~~~~~~ape~~~~~~~~~~~~~  152 (202)
                      -+       ..|.|||||+.|||+.+++.  +.|+|+|+|........     +....||..|||||++.-..-...+.-
T Consensus       326 ~eI~GTqgKPaIAHRDlKSKNILVKkn~~--C~IADLGLAv~h~~~t~~idi~~N~rVGTKRYMAPEvLdetin~~~Fes  403 (513)
T KOG2052|consen  326 MEIVGTQGKPAIAHRDLKSKNILVKKNGT--CCIADLGLAVRHDSDTDTIDIPPNPRVGTKRYMAPEVLDETINMKHFES  403 (513)
T ss_pred             HHHhcCCCCchhhccccccccEEEccCCc--EEEeeceeeEEecccCCcccCCCCCccceeeccChHHhhhhcChhhhhh
Confidence            53       35999999999999999887  99999999998765321     224689999999999974331111222


Q ss_pred             CCCcchhhHHHH
Q psy320          153 DPRVDPTSIKMY  164 (202)
Q Consensus       153 ~~~~Diwsl~~~  164 (202)
                      -..+||||+|+.
T Consensus       404 yk~ADIYafgLV  415 (513)
T KOG2052|consen  404 YKRADIYAFGLV  415 (513)
T ss_pred             hhHHHHHHHHHH
Confidence            247999999753

>KOG0670|consensus

Probab=99.89  E-value=6.1e-24  Score=169.34  Aligned_cols=146  Identities=18%  Similarity=0.243  Sum_probs=121.0

Q ss_pred             HHHHHHHHHHHHhcCC---CccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCC-CCCCHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHP---SDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKF-QPAPLVVAKIIVNQILEGL   80 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~---h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~-~~~~~~~~~~~~~qi~~~l   80 (202)
                      .-+.|+++|++|..-.   --|+++++-.|.    ...++|||||.+..+|.+++++.+. -++....+..++.|++.||
T Consensus       474 tGl~EleiLkKL~~AD~Edk~Hclrl~r~F~----hknHLClVFE~LslNLRevLKKyG~nvGL~ikaVRsYaqQLflAL  549 (752)
T KOG0670|consen  474 TGLKELEILKKLNDADPEDKFHCLRLFRHFK----HKNHLCLVFEPLSLNLREVLKKYGRNVGLHIKAVRSYAQQLFLAL  549 (752)
T ss_pred             hhhHHHHHHHHhhccCchhhhHHHHHHHHhh----hcceeEEEehhhhchHHHHHHHhCcccceeehHHHHHHHHHHHHH
Confidence            4467999999996432   237999999998    5789999999999999999999873 3588899999999999999


Q ss_pred             HHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           81 NHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        81 ~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      ..|-. |||+|.||||+|||++...+ .+||||||.|...... +..+...+..|.|||++.+      .+|+-..|+||
T Consensus       550 klLK~-c~vlHaDIKPDNiLVNE~k~-iLKLCDfGSA~~~~en-eitPYLVSRFYRaPEIiLG------~~yd~~iD~WS  620 (752)
T KOG0670|consen  550 KLLKK-CGVLHADIKPDNILVNESKN-ILKLCDFGSASFASEN-EITPYLVSRFYRAPEIILG------LPYDYPIDTWS  620 (752)
T ss_pred             HHHHh-cCeeecccCccceEeccCcc-eeeeccCccccccccc-cccHHHHHHhccCcceeec------CcccCCcccee
Confidence            99999 89999999999999998765 6899999999876422 2223334456999999994      44888999999


Q ss_pred             HHH
Q psy320          161 IKM  163 (202)
Q Consensus       161 l~~  163 (202)
                      +|+
T Consensus       621 vgc  623 (752)
T KOG0670|consen  621 VGC  623 (752)
T ss_pred             ece
Confidence            974

>KOG0668|consensus

Probab=99.89  E-value=5.2e-23  Score=149.30  Aligned_cols=158  Identities=15%  Similarity=0.144  Sum_probs=124.5

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .-++|+++|+-++.+|  ||+.+++...+.  ..+.+.+++||. +.+...+...     ++...++.++.+++.||.|+
T Consensus        78 KIkREikIL~nL~gg~--NIi~L~DiV~Dp--~SktpaLiFE~v~n~Dfk~ly~t-----l~d~dIryY~~elLkALdyC  148 (338)
T KOG0668|consen   78 KIKREIKILQNLRGGP--NIIKLLDIVKDP--ESKTPSLIFEYVNNTDFKQLYPT-----LTDYDIRYYIYELLKALDYC  148 (338)
T ss_pred             HHHHHHHHHHhccCCC--CeeehhhhhcCc--cccCchhHhhhhccccHHHHhhh-----hchhhHHHHHHHHHHHHhHH
Confidence            3468999999997777  999999998742  355788999999 7777665533     77889999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |+. ||+|||+||.|++++...+ .++|+|+|+|.+.-+..+......+..|-.||++.--     .-|+-..|+||+|+
T Consensus       149 HS~-GImHRDVKPhNvmIdh~~r-kLrlIDWGLAEFYHp~~eYnVRVASRyfKGPELLVdy-----~~YDYSLD~WS~Gc  221 (338)
T KOG0668|consen  149 HSM-GIMHRDVKPHNVMIDHELR-KLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDY-----QMYDYSLDMWSLGC  221 (338)
T ss_pred             Hhc-CcccccCCcceeeechhhc-eeeeeecchHhhcCCCceeeeeeehhhcCCchheeec-----hhccccHHHHHHHH
Confidence            996 9999999999999997654 5999999999998655555555667788899998622     23566899999985


Q ss_pred             HHHHHHHHHHHHhcCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~  183 (202)
                           ++...+...+|-|..
T Consensus       222 -----mlA~miFrkepFFhG  236 (338)
T KOG0668|consen  222 -----MLASMIFRKEPFFHG  236 (338)
T ss_pred             -----HHHHHHhccCcccCC
Confidence                 344455555555543

>KOG0199|consensus

Probab=99.88  E-value=7.6e-23  Score=167.95  Aligned_cols=148  Identities=14%  Similarity=0.158  Sum_probs=122.9

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ..+.+|+.++.++ +|+  |++++||+..     +.-.-+|||.+ .|||.+.+++.....|.......++.||+.||.|
T Consensus       156 ddflrEas~M~~L-~H~--hliRLyGvVl-----~qp~mMV~ELaplGSLldrLrka~~~~llv~~Lcdya~QiA~aM~Y  227 (1039)
T KOG0199|consen  156 DDFLREASHMLKL-QHP--HLIRLYGVVL-----DQPAMMVFELAPLGSLLDRLRKAKKAILLVSRLCDYAMQIAKAMQY  227 (1039)
T ss_pred             HHHHHHHHHHHhc-cCc--ceeEEeeeec-----cchhhHHhhhcccchHHHHHhhccccceeHHHHHHHHHHHHHHHHH
Confidence            3578899999988 455  9999999987     35677999999 9999999988555679999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC----CCCCCccchhhHHHHhhhhccCCCCCCCcch
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ----SSSKTKSKIFCEILEQCRLNQDFRLDPRVDP  158 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~----~~~~~~~~~ape~~~~~~~~~~~~~~~~~Di  158 (202)
                      |.++ ++|||||...|+++-....  |||+|||+.+.........    ...-...|.|||.+...      .++-++|+
T Consensus       228 Lesk-rlvHRDLAARNlllasprt--VKI~DFGLmRaLg~ned~Yvm~p~rkvPfAWCaPEsLrh~------kFShaSDv  298 (1039)
T KOG0199|consen  228 LESK-RLVHRDLAARNLLLASPRT--VKICDFGLMRALGENEDMYVMAPQRKVPFAWCAPESLRHR------KFSHASDV  298 (1039)
T ss_pred             Hhhh-hhhhhhhhhhhheecccce--eeeecccceeccCCCCcceEecCCCcCcccccCHhHhccc------cccccchh
Confidence            9998 9999999999999987655  9999999999875432222    12333468999999944      47889999


Q ss_pred             hhH--HHHHHHH
Q psy320          159 TSI--KMYTTFC  168 (202)
Q Consensus       159 wsl--~~~~~~~  168 (202)
                      |++  .+|+||+
T Consensus       299 WmyGVTiWEMFt  310 (1039)
T KOG0199|consen  299 WMYGVTIWEMFT  310 (1039)
T ss_pred             hhhhhhHHhhhc
Confidence            999  5799988

>KOG0200|consensus

Probab=99.88  E-value=3.3e-22  Score=169.17  Aligned_cols=145  Identities=17%  Similarity=0.192  Sum_probs=119.5

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC------CC--------CCCHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK------FQ--------PAPLVV   68 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~------~~--------~~~~~~   68 (202)
                      .....|++++..+.+|+  ||+.+++++.    .+...++|+||+ .|+|.++++...      ..        .++...
T Consensus       346 ~~~~~El~~m~~~g~H~--niv~llG~~t----~~~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~d  419 (609)
T KOG0200|consen  346 KDLMSELNVLKELGKHP--NIVNLLGACT----QDGPLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKD  419 (609)
T ss_pred             HHHHHHHHHHHHhcCCc--chhhheeeec----cCCceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHH
Confidence            45567899999997677  9999999999    456899999999 999999998654      01        288899


Q ss_pred             HHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC--CCC--CCccchhhHHHHhh
Q psy320           69 AKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ--SSS--KTKSKIFCEILEQC  144 (202)
Q Consensus        69 ~~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~--~~~--~~~~~~ape~~~~~  144 (202)
                      ...++.||+.|++||+++ .++||||-..|||+..+..  +|++|||+|+.........  ...  -...|+|||.+.. 
T Consensus       420 Llsfa~QIa~GMe~L~~~-~~vHRDLAaRNVLi~~~~~--~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmApEsl~~-  495 (609)
T KOG0200|consen  420 LLSFAYQIANGMEYLASV-PCVHRDLAARNVLITKNKV--IKIADFGLARDHYNKDYYRTKSSAGTLPVKWMAPESLFD-  495 (609)
T ss_pred             HHHHHHHHHHHHHHHhhC-CccchhhhhhhEEecCCCE--EEEccccceeccCCCCceEecCCCCccceeecCHHHhcc-
Confidence            999999999999999997 9999999999999998866  9999999999765433332  112  2345999999994 


Q ss_pred             hhccCCCCCCCcchhhHHH
Q psy320          145 RLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus       145 ~~~~~~~~~~~~Diwsl~~  163 (202)
                           ..|+.++|+||+|+
T Consensus       496 -----~~ft~kSDVWSfGI  509 (609)
T KOG0200|consen  496 -----RVFTSKSDVWSFGI  509 (609)
T ss_pred             -----CcccccchhhHHHH
Confidence                 34888999999976

>KOG1345|consensus

Probab=99.87  E-value=4.3e-23  Score=152.95  Aligned_cols=152  Identities=17%  Similarity=0.234  Sum_probs=118.9

Q ss_pred             Cccceeeeee-eEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCc
Q psy320           21 SDKLMKLLDH-FQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPES   98 (202)
Q Consensus        21 h~~Iv~l~~~-~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~n   98 (202)
                      |.||+.-+++ |+    +.+.+++++||+ .|+|.+-+...   ++.+...+.++.|+++|+.|+|++ ++||||||.+|
T Consensus        80 H~hIi~tY~vaFq----t~d~YvF~qE~aP~gdL~snv~~~---GigE~~~K~v~~ql~SAi~fMHsk-nlVHRdlK~eN  151 (378)
T KOG1345|consen   80 HQHIIDTYEVAFQ----TSDAYVFVQEFAPRGDLRSNVEAA---GIGEANTKKVFAQLLSAIEFMHSK-NLVHRDLKAEN  151 (378)
T ss_pred             chhhhHHHHHHhh----cCceEEEeeccCccchhhhhcCcc---cccHHHHHHHHHHHHHHHHHhhcc-chhhcccccce
Confidence            6699998887 66    556999999999 99998766553   499999999999999999999998 99999999999


Q ss_pred             eeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHhcC
Q psy320           99 IFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLNH  178 (202)
Q Consensus        99 il~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~~~  178 (202)
                      ||+-..+-.++||||||.++....  ..........|.+||...-. .......++..|+|.+|+      ++-.|+.|+
T Consensus       152 iLif~~df~rvKlcDFG~t~k~g~--tV~~~~~~~~y~~pe~~~~~-~ne~~~~~ps~D~WqfGI------i~f~cltG~  222 (378)
T KOG1345|consen  152 ILIFDADFYRVKLCDFGLTRKVGT--TVKYLEYVNNYHAPELCDTV-VNEKLVVNPSTDIWQFGI------IFFYCLTGK  222 (378)
T ss_pred             EEEecCCccEEEeeecccccccCc--eehhhhhhcccCCcHHHhhc-cccceEecccccchheee------eeeeeecCC
Confidence            999876656799999999887642  22222334457788887644 233445578999999998      555888899


Q ss_pred             CCCCCCCCCCC
Q psy320          179 QDFRPDPRVDP  189 (202)
Q Consensus       179 ~~~~~~~~~~~  189 (202)
                      +||......++
T Consensus       223 ~PWQka~~~d~  233 (378)
T KOG1345|consen  223 FPWQKASIMDK  233 (378)
T ss_pred             CcchhhhccCc
Confidence            99875444443

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.87  E-value=1.8e-22  Score=176.00  Aligned_cols=134  Identities=11%  Similarity=0.065  Sum_probs=101.8

Q ss_pred             ccceeeeeeeEEecC---CceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCc
Q psy320           22 DKLMKLLDHFQVTGI---NGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPES   98 (202)
Q Consensus        22 ~~Iv~l~~~~~~~~~---~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~n   98 (202)
                      +||++++++|...+.   ....+++++|+++++|.+++... .+.+++..++.++.||+.||.|||++ ||+||||||+|
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~L~~~l~~~-~~~~~~~~~~~i~~qi~~al~~lH~~-gIvHrDlKP~N  110 (793)
T PLN00181         33 DYVRSLLGSHKEGNLDGLDDDSIVRALECEDVSLRQWLDNP-DRSVDAFECFHVFRQIVEIVNAAHSQ-GIVVHNVRPSC  110 (793)
T ss_pred             HHHHHhhcccCCccccccccchhhhhhccCCccHHHHHhcc-cccccHHHHHHHHHHHHHHHHHHHhC-CeeeccCCchh
Confidence            499999999854332   23567888999999999999653 24599999999999999999999996 99999999999


Q ss_pred             eeeecCC-----------------cceeEEeeccccccccccc------------CC-----CCCCCCccchhhHHHHhh
Q psy320           99 IFFKADH-----------------VYIMTLINIQQATTHQECH------------DQ-----QSSSKTKSKIFCEILEQC  144 (202)
Q Consensus        99 il~~~~~-----------------~~~~~l~Dfg~a~~~~~~~------------~~-----~~~~~~~~~~ape~~~~~  144 (202)
                      ||++..+                 ...+|++|||+++......            .+     ....+|+.|+|||.+...
T Consensus       111 iLl~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~  190 (793)
T PLN00181        111 FVMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILAMEMSWYTSPEEDNGS  190 (793)
T ss_pred             EEEcccCcEEEeeccccCcccccccCcccccccccccccccccccchhhhhccccCCCcccccccCCCcceEChhhhccC
Confidence            9996422                 2237777888776431100            00     013578889999998743


Q ss_pred             hhccCCCCCCCcchhhHHH
Q psy320          145 RLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus       145 ~~~~~~~~~~~~Diwsl~~  163 (202)
                            .|+.++||||+|+
T Consensus       191 ------~~~~~sDVwSlGv  203 (793)
T PLN00181        191 ------SSNCASDVYRLGV  203 (793)
T ss_pred             ------CCCchhhhhhHHH
Confidence                  3788999999975

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.86  E-value=4.8e-21  Score=143.91  Aligned_cols=156  Identities=21%  Similarity=0.249  Sum_probs=125.5

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ....+|++.++++ +|+  ||+++.+.+.    .....++++|++ +++|.+++.....  ++...+..++.+++.++.+
T Consensus        32 ~~~~~e~~~~~~l-~~~--~i~~~~~~~~----~~~~~~l~~e~~~~~~L~~~~~~~~~--~~~~~~~~~~~~l~~~l~~  102 (244)
T smart00220       32 ERILREISILKKL-KHP--NIVRLYDVFE----DEDKLYLVMEYCDGGDLFDLLKKRGR--LSEDEARFYARQILSALEY  102 (244)
T ss_pred             HHHHHHHHHHHhC-CCC--cHHHHHhhee----eCCEEEEEEeCCCCCCHHHHHHhccC--CCHHHHHHHHHHHHHHHHH
Confidence            3456788888888 555  9999999998    456899999999 6699999876532  8999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      ||+. +++|+||+|.||+++.++.  ++++|||.+.............++..|++||....      ..++.++|+||+|
T Consensus       103 lh~~-~i~h~~i~~~ni~~~~~~~--~~l~d~~~~~~~~~~~~~~~~~~~~~~~~pE~~~~------~~~~~~~Di~slG  173 (244)
T smart00220      103 LHSN-GIIHRDLKPENILLDEDGH--VKLADFGLARQLDPGGLLTTFVGTPEYMAPEVLLG------KGYGKAVDVWSLG  173 (244)
T ss_pred             HHHc-CeecCCcCHHHeEECCCCc--EEEccccceeeeccccccccccCCcCCCCHHHHcc------CCCCchhhHHHHH
Confidence            9995 9999999999999998866  99999999988764433345567888999999872      3367799999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +..+      .+..|..++..
T Consensus       174 ~~l~------~l~~~~~p~~~  188 (244)
T smart00220      174 VILY------ELLTGKPPFPG  188 (244)
T ss_pred             HHHH------HHHhCCCCCCC
Confidence            6322      44446666543

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.86  E-value=1.9e-21  Score=173.07  Aligned_cols=146  Identities=13%  Similarity=0.144  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH-
Q psy320            7 TNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH-   84 (202)
Q Consensus         7 ~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh-   84 (202)
                      .+|++.++++ +|  |||++++++|.    +....++||||+ +++|.++++.     +++.....++.|++.|+.|+| 
T Consensus       731 ~~~~~~l~~l-~H--pnIv~~~~~~~----~~~~~~lv~Ey~~~g~L~~~l~~-----l~~~~~~~i~~~ia~~L~yLH~  798 (968)
T PLN00113        731 SSEIADMGKL-QH--PNIVKLIGLCR----SEKGAYLIHEYIEGKNLSEVLRN-----LSWERRRKIAIGIAKALRFLHC  798 (968)
T ss_pred             HHHHHHHhhC-CC--CCcceEEEEEE----cCCCCEEEEeCCCCCcHHHHHhc-----CCHHHHHHHHHHHHHHHHHhcc
Confidence            4567777777 45  59999999998    456789999999 9999999853     788999999999999999999 


Q ss_pred             --hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           85 --TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        85 --~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                        +. +++|||+||+||+++.+..  .++. ++.+....   ......++..|+|||.+..      ..++.++|+||+|
T Consensus       799 ~~~~-~iiH~dlkp~Nil~~~~~~--~~~~-~~~~~~~~---~~~~~~~t~~y~aPE~~~~------~~~~~~sDv~S~G  865 (968)
T PLN00113        799 RCSP-AVVVGNLSPEKIIIDGKDE--PHLR-LSLPGLLC---TDTKCFISSAYVAPETRET------KDITEKSDIYGFG  865 (968)
T ss_pred             CCCC-CeecCCCCHHhEEECCCCc--eEEE-eccccccc---cCCCccccccccCcccccC------CCCCcccchhhHH
Confidence              53 9999999999999987765  4443 55443321   1112357789999998873      3478899999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +..+      .+..|..++.+
T Consensus       866 vvl~------el~tg~~p~~~  880 (968)
T PLN00113        866 LILI------ELLTGKSPADA  880 (968)
T ss_pred             HHHH------HHHhCCCCCCc
Confidence            7332      45557766643

>KOG1035|consensus

Probab=99.86  E-value=1.4e-21  Score=168.30  Aligned_cols=137  Identities=21%  Similarity=0.287  Sum_probs=104.5

Q ss_pred             eEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccc
Q psy320           39 THVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQA  117 (202)
Q Consensus        39 ~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a  117 (202)
                      ..+|+-|||| ..+|.+++.++-.. -....++++++||+.||.|+|+. |++||||||.|||++.++.  |||+|||+|
T Consensus       669 ~~LYIQMEyCE~~ll~~iI~~N~~~-~~~d~~wrLFreIlEGLaYIH~~-giIHRDLKP~NIFLd~~~~--VKIGDFGLA  744 (1351)
T KOG1035|consen  669 LILYIQMEYCEKTLLRDIIRRNHFN-SQRDEAWRLFREILEGLAYIHDQ-GIIHRDLKPRNIFLDSRNS--VKIGDFGLA  744 (1351)
T ss_pred             eEEEEEHhhhhhhHHHHHHHhcccc-hhhHHHHHHHHHHHHHHHHHHhC-ceeeccCCcceeEEcCCCC--eeecccccc
Confidence            5789999999 66666666554311 14788999999999999999996 9999999999999998877  999999999


Q ss_pred             cccc---c----------------ccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH--HHHHH--------
Q psy320          118 TTHQ---E----------------CHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM--YTTFC--------  168 (202)
Q Consensus       118 ~~~~---~----------------~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~--~~~~~--------  168 (202)
                      ....   .                .+......||--|.|||++....   ..+|+.|+|+||||+  ++|+.        
T Consensus       745 t~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEll~~~~---~~~Yn~KiDmYSLGIVlFEM~yPF~TsMER  821 (1351)
T KOG1035|consen  745 TDLKENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAPELLSDTS---SNKYNSKIDMYSLGIVLFEMLYPFGTSMER  821 (1351)
T ss_pred             hhhhhhhhhHhhccCccccccCCCCcccccccceeeeecHHHhcccc---cccccchhhhHHHHHHHHHHhccCCchHHH
Confidence            8721   0                01122458999999999998554   246899999999965  45554        


Q ss_pred             -HHHHHHHhcCCCCC
Q psy320          169 -EILEQCRLNHQDFR  182 (202)
Q Consensus       169 -~~~~~~~~~~~~~~  182 (202)
                       .++..++.|..|++
T Consensus       822 a~iL~~LR~g~iP~~  836 (1351)
T KOG1035|consen  822 ASILTNLRKGSIPEP  836 (1351)
T ss_pred             HHHHHhcccCCCCCC
Confidence             55555555555555

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.86  E-value=4.7e-20  Score=135.28  Aligned_cols=166  Identities=20%  Similarity=0.267  Sum_probs=134.3

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ..+.+|++.++.+ +++  +|+++++++.    .....++++|++ +++|.+++.... ..++...+..++.+++.++.+
T Consensus        36 ~~~~~e~~~~~~l-~~~--~i~~~~~~~~----~~~~~~~~~e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~  107 (215)
T cd00180          36 EELLREIEILKKL-NHP--NIVKLYGVFE----DENHLYLVMEYCEGGSLKDLLKENE-GKLSEDEILRILLQILEGLEY  107 (215)
T ss_pred             HHHHHHHHHHHhc-CCC--CeeeEeeeee----cCCeEEEEEecCCCCcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHH
Confidence            3467788888888 455  9999999998    457899999999 699999987652 248999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeec-CCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           83 LHTKHNLVHTSIKPESIFFKA-DHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~-~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      +|+. |++|+||+|.||+++. ++.  ++++|||.+....... ......+...|.+||.....     ..++.+.|+|+
T Consensus       108 lh~~-~~~H~dl~~~ni~~~~~~~~--~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~-----~~~~~~~D~~~  179 (215)
T cd00180         108 LHSN-GIIHRDLKPENILLDSDNGK--VKLADFGLSKLLTSDKSLLKTIVGTPAYMAPEVLLGK-----GYYSEKSDIWS  179 (215)
T ss_pred             HHhC-CeeccCCCHhhEEEeCCCCc--EEEecCCceEEccCCcchhhcccCCCCccChhHhccc-----CCCCchhhhHH
Confidence            9996 9999999999999998 555  9999999998765332 12235577789999998732     13567899999


Q ss_pred             HHHH----HHHHHHHHHHHhcCCCCCCCC
Q psy320          161 IKMY----TTFCEILEQCRLNHQDFRPDP  185 (202)
Q Consensus       161 l~~~----~~~~~~~~~~~~~~~~~~~~~  185 (202)
                      +|+.    .-+.+++..|+..++..||+.
T Consensus       180 lg~~~~~l~~~~~~l~~~l~~~p~~R~~~  208 (215)
T cd00180         180 LGVILYELPELKDLIRKMLQKDPEKRPSA  208 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCcccCcCH
Confidence            9865    345688888988888888764

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG1167|consensus

Probab=99.84  E-value=6.2e-21  Score=148.49  Aligned_cols=159  Identities=19%  Similarity=0.255  Sum_probs=124.0

Q ss_pred             CchHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Q psy320            2 HTNYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGL   80 (202)
Q Consensus         2 ~~~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l   80 (202)
                      ++..-.+|++.|..+..+.  ||+++.+++.    .+++.++|+||+ -.+..++...     ++...++.+++.++.||
T Consensus        77 ~p~ri~~El~~L~~~gG~~--ni~~~~~~~r----nnd~v~ivlp~~~H~~f~~l~~~-----l~~~~i~~Yl~~ll~Al  145 (418)
T KOG1167|consen   77 SPSRILNELEMLYRLGGSD--NIIKLNGCFR----NNDQVAIVLPYFEHDRFRDLYRS-----LSLAEIRWYLRNLLKAL  145 (418)
T ss_pred             CchHHHHHHHHHHHhccch--hhhcchhhhc----cCCeeEEEecccCccCHHHHHhc-----CCHHHHHHHHHHHHHHh
Confidence            3455678999999997777  9999999999    678999999999 6777777644     77899999999999999


Q ss_pred             HHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccc-------c------CC---------------------
Q psy320           81 NHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQEC-------H------DQ---------------------  126 (202)
Q Consensus        81 ~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~-------~------~~---------------------  126 (202)
                      .++|.+ ||+|||+||+|+|++.... +-.|+|||+|......       +      .+                     
T Consensus       146 ~~~h~~-GIvHRDiKpsNFL~n~~t~-rg~LvDFgLA~~~d~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~p~g~~  223 (418)
T KOG1167|consen  146 AHLHKN-GIVHRDIKPSNFLYNRRTQ-RGVLVDFGLAQRYDGYQQTEHSRSYSGRHATPAMGKDVHCQSVATASKPAGYY  223 (418)
T ss_pred             hhhhcc-CccccCCCccccccccccC-CceEEechhHHHHHhhhhhhhhhhhhcccCCccccCcccccccccccCCCCce
Confidence            999997 9999999999999987653 5899999998821100       0      00                     


Q ss_pred             C-----------CCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCCC
Q psy320          127 Q-----------SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       127 ~-----------~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      .           ...||++|.|||++..++     .-++++|+||.|+      ++-.++.+..||--.
T Consensus       224 ~~~~~~r~~~~anrAGT~GfRaPEvL~k~~-----~QttaiDiws~GV------I~Lslls~~~PFf~a  281 (418)
T KOG1167|consen  224 RRCNDGRPSERANRAGTPGFRAPEVLFRCP-----RQTTAIDIWSAGV------ILLSLLSRRYPFFKA  281 (418)
T ss_pred             eccCCCccceecccCCCCCCCchHHHhhcc-----CcCCccceeeccc------eeehhhccccccccC
Confidence            0           117999999999999765     2466999999986      333555555555433

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.84  E-value=2.1e-20  Score=156.91  Aligned_cols=124  Identities=19%  Similarity=0.214  Sum_probs=90.8

Q ss_pred             CceEEEEEEccc-cccHHHHHHHcCCC------------------CCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCC
Q psy320           37 NGTHVCTVTEIM-AECLCNYMIRQKFQ------------------PAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPE   97 (202)
Q Consensus        37 ~~~~~~lv~e~~-~~sL~~~~~~~~~~------------------~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~   97 (202)
                      .+...++|+||+ +++|.+++......                  ......+..++.|++.||.|||++ +|+||||||+
T Consensus       206 ~~~~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~~-gIiHRDLKP~  284 (566)
T PLN03225        206 KEDEYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHST-GIVHRDVKPQ  284 (566)
T ss_pred             cCCceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHHC-CEEeCcCCHH
Confidence            456899999999 89999988653210                  012345678999999999999996 9999999999


Q ss_pred             ceeeecC-CcceeEEeeccccccccccc--CCCCCCCCccchhhHHHHhhhhccC----------------CCCCCCcch
Q psy320           98 SIFFKAD-HVYIMTLINIQQATTHQECH--DQQSSSKTKSKIFCEILEQCRLNQD----------------FRLDPRVDP  158 (202)
Q Consensus        98 nil~~~~-~~~~~~l~Dfg~a~~~~~~~--~~~~~~~~~~~~ape~~~~~~~~~~----------------~~~~~~~Di  158 (202)
                      |||++.+ +.  +||+|||+|+......  ......+++.|+|||.+......+.                ..++.++|+
T Consensus       285 NILl~~~~~~--~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~~~~~k~DV  362 (566)
T PLN03225        285 NIIFSEGSGS--FKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDI  362 (566)
T ss_pred             HEEEeCCCCc--EEEEeCCCccccccccccCCcccccCCCccChHHhhccCCCCCCccccccccccchhccccCCCCccc
Confidence            9999864 44  9999999998653322  2224578899999997753321111                123446799


Q ss_pred             hhHHH
Q psy320          159 TSIKM  163 (202)
Q Consensus       159 wsl~~  163 (202)
                      ||+|+
T Consensus       363 wSlGv  367 (566)
T PLN03225        363 YSAGL  367 (566)
T ss_pred             HHHHH
Confidence            99975

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.84  E-value=1.9e-20  Score=160.30  Aligned_cols=142  Identities=13%  Similarity=0.083  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+..+..+ +||  ||+++++++.    ...+.|+||||+ +++|.+++....  .+++..++.++.|++.||.||
T Consensus        50 ~~~~E~~~l~~l-~hp--~Iv~~~~~~~----~~~~~~lVmEy~~g~~L~~li~~~~--~l~~~~~~~i~~qil~aL~yL  120 (669)
T cd05610          50 QVQAERDALALS-KSP--FIVHLYYSLQ----SANNVYLVMEYLIGGDVKSLLHIYG--YFDEEMAVKYISEVALALDYL  120 (669)
T ss_pred             HHHHHHHHHHhc-CCC--CcCeEEEEEE----ECCEEEEEEeCCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHH
Confidence            345677777766 455  9999999988    466999999999 999999997653  489999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |.. +|+||||||+|||++.++.  ++|+|||+++...... ......+++.|.+||.....     .+.....++|++|
T Consensus       121 H~~-gIiHrDLKP~NILl~~~g~--vkL~DFGls~~~~~~~~~~~~~~~t~~~~~pe~~~~~-----~~~~~~s~~~s~g  192 (669)
T cd05610         121 HRH-GIIHRDLKPDNMLISNEGH--IKLTDFGLSKVTLNRELNMMDILTTPSMAKPKNDYSR-----TPGQVLSLISSLG  192 (669)
T ss_pred             HhC-CEEeCCccHHHEEEcCCCC--EEEEeCCCCccccCCcccccccccCccccCccccccC-----CCCceeeeeeecC
Confidence            995 9999999999999988776  9999999998764322 22245788899999876522     1122356777776


Q ss_pred             H
Q psy320          163 M  163 (202)
Q Consensus       163 ~  163 (202)
                      .
T Consensus       193 ~  193 (669)
T cd05610         193 F  193 (669)
T ss_pred             c
Confidence            4

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.84  E-value=6.2e-20  Score=151.29  Aligned_cols=133  Identities=19%  Similarity=0.174  Sum_probs=98.7

Q ss_pred             HHHHHHHHHhcCC--CccceeeeeeeEEecC----CceEEEEEEccc-cccHHHHHHHcC--------------------
Q psy320            8 NLIKTLIEIQKHP--SDKLMKLLDHFQVTGI----NGTHVCTVTEIM-AECLCNYMIRQK--------------------   60 (202)
Q Consensus         8 ~e~~~l~~l~~~~--h~~Iv~l~~~~~~~~~----~~~~~~lv~e~~-~~sL~~~~~~~~--------------------   60 (202)
                      .|+..+.++++++  +.+++++.++|.....    .....++|+||+ +++|.+++....                    
T Consensus       221 vE~~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~  300 (507)
T PLN03224        221 VEAYMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDN  300 (507)
T ss_pred             HHHHHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhh
Confidence            4666677775443  4456788888764321    234789999999 999999886421                    


Q ss_pred             --CCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC--CCCCCccch
Q psy320           61 --FQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ--SSSKTKSKI  136 (202)
Q Consensus        61 --~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~--~~~~~~~~~  136 (202)
                        ...++...++.++.|++.+|.|+|+. +++||||||+||+++.++.  ++|+|||.+..........  ....++.|+
T Consensus       301 ~~~~~~~~~~~~~i~~ql~~aL~~lH~~-~ivHrDLKp~NILl~~~~~--~kL~DFGla~~~~~~~~~~~~~g~~tp~Y~  377 (507)
T PLN03224        301 MPQDKRDINVIKGVMRQVLTGLRKLHRI-GIVHRDIKPENLLVTVDGQ--VKIIDFGAAVDMCTGINFNPLYGMLDPRYS  377 (507)
T ss_pred             cccccCCHHHHHHHHHHHHHHHHHHHHC-CeecCCCchHhEEECCCCc--EEEEeCcCccccccCCccCccccCCCccee
Confidence              11245677889999999999999996 9999999999999998776  9999999997654322111  234578999


Q ss_pred             hhHHHHh
Q psy320          137 FCEILEQ  143 (202)
Q Consensus       137 ape~~~~  143 (202)
                      +||.+..
T Consensus       378 aPE~l~~  384 (507)
T PLN03224        378 PPEELVM  384 (507)
T ss_pred             ChhhhcC
Confidence            9999864

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.84  E-value=1.2e-19  Score=135.12  Aligned_cols=158  Identities=23%  Similarity=0.259  Sum_probs=125.0

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +...+|++.++++ +|+  |++++++.+.    .....++++|++ +++|.+++..... .++...+..++.+++.++.+
T Consensus        42 ~~~~~e~~~~~~~-~~~--~i~~~~~~~~----~~~~~~~v~e~~~~~~L~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~  113 (225)
T smart00221       42 EEFLREIRILKKL-KHP--NIVKLYGVFE----DPEPLYLVMEYCEGGDLFDYLRKKGG-KLSEEEARFYLRQILEALEY  113 (225)
T ss_pred             HHHHHHHHHHHhC-CCC--Chhhheeeee----cCCceEEEEeccCCCCHHHHHHhccc-CCCHHHHHHHHHHHHHHHHH
Confidence            3455678888888 455  9999999988    456899999999 6799999877532 17899999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc--CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH--DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~--~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      +|+. +++|+|++|.||+++.++.  ++++|||.+.......  ......+...|++||... .    ...++.++|+|+
T Consensus       114 lh~~-~i~h~di~~~ni~v~~~~~--~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~~pe~~~-~----~~~~~~~~Dv~~  185 (225)
T smart00221      114 LHSL-GIVHRDLKPENILLGMDGL--VKLADFGLARFIHRDLAALLKTVKGTPFYLAPEVLL-G----GKGYGEAVDIWS  185 (225)
T ss_pred             HHhC-CeecCCCCHHHEEEcCCCC--EEEeeCceeeEecCcccccccceeccCCcCCHhHhc-C----CCCCCchhhHHH
Confidence            9995 9999999999999998765  9999999998875432  223456777899999985 1    344666999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCC
Q psy320          161 IKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       161 l~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +|+.      +..+..|..+|..
T Consensus       186 lG~~------~~~l~~g~~pf~~  202 (225)
T smart00221      186 LGVI------LYELLWGPEPFSG  202 (225)
T ss_pred             HHHH------HHHHHHCCCCccc
Confidence            9863      3345558888844

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG0576|consensus

Probab=99.83  E-value=1.8e-21  Score=158.98  Aligned_cols=134  Identities=13%  Similarity=0.155  Sum_probs=115.9

Q ss_pred             cCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCC
Q psy320           18 KHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKP   96 (202)
Q Consensus        18 ~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p   96 (202)
                      +..||||+.+++.+.    .....|+.|||| +|+|.+...-.  +.+++.++...+++.+.+++|||+. |=+|||||-
T Consensus        68 dc~h~nivay~gsyl----r~dklwicMEycgggslQdiy~~T--gplselqiayvcRetl~gl~ylhs~-gk~hRdiKG  140 (829)
T KOG0576|consen   68 DCRHPNIVAYFGSYL----RRDKLWICMEYCGGGSLQDIYHVT--GPLSELQIAYVCRETLQGLKYLHSQ-GKIHRDIKG  140 (829)
T ss_pred             cCCCcChHHHHhhhh----hhcCcEEEEEecCCCcccceeeec--ccchhHHHHHHHhhhhccchhhhcC-Ccccccccc
Confidence            444679999999998    677999999999 89998876544  5699999999999999999999996 999999999


Q ss_pred             CceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           97 ESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        97 ~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      .||+++..++  +|++|||.+..++..- ....+.||++|+|||+.....   .-.|...+|+|++|+
T Consensus       141 anilltd~gD--vklaDfgvsaqitati~KrksfiGtpywmapEvaaver---kggynqlcdiwa~gi  203 (829)
T KOG0576|consen  141 ANILLTDEGD--VKLADFGVSAQITATIAKRKSFIGTPYWMAPEVAAVER---KGGYNQLCDIWALGI  203 (829)
T ss_pred             cceeecccCc--eeecccCchhhhhhhhhhhhcccCCccccchhHHHHHh---ccccccccccccccc
Confidence            9999999888  9999999998876543 334689999999999988554   566888999999975

>KOG1025|consensus

Probab=99.82  E-value=2.1e-20  Score=156.02  Aligned_cols=146  Identities=16%  Similarity=0.210  Sum_probs=118.7

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+-.+..+ +||  |++++++++.     .+.+-||++|+ .|+|.++.+.+. ..+.....+.|..||+.||.||
T Consensus       744 e~LdeAl~masl-dHp--nl~RLLgvc~-----~s~~qlvtq~mP~G~LlDyvr~hr-~~igsq~lLnw~~QIAkgM~YL  814 (1177)
T KOG1025|consen  744 ELLDEALRMASL-DHP--NLLRLLGVCM-----LSTLQLVTQLMPLGCLLDYVREHR-DNIGSQDLLNWCYQIAKGMKYL  814 (1177)
T ss_pred             HHHHHHHHHhcC-CCc--hHHHHhhhcc-----cchHHHHHHhcccchHHHHHHHhh-ccccHHHHHHHHHHHHHHHHHH
Confidence            445666666666 555  9999999998     33578999999 999999998754 5688899999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCC---CCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSS---SKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~---~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      |.+ ++|||||-..|+|+.....  +|+.|||+++...........   .-...|+|-|.+.      .+.|+.++|+||
T Consensus       815 e~q-rlVHrdLaaRNVLVksP~h--vkitdfgla~ll~~d~~ey~~~~gK~pikwmale~i~------~~~~thqSDVWs  885 (1177)
T KOG1025|consen  815 EEQ-RLVHRDLAARNVLVKSPNH--VKITDFGLAKLLAPDEKEYSAPGGKVPIKWMALESIR------IRKYTHQSDVWS  885 (1177)
T ss_pred             Hhc-chhhhhhhhhheeecCCCe--EEEEecchhhccCcccccccccccccCcHHHHHHHhh------ccCCCchhhhhh
Confidence            996 9999999999999998776  999999999988765544432   2334689999888      445888999999


Q ss_pred             HHH--HHHHH
Q psy320          161 IKM--YTTFC  168 (202)
Q Consensus       161 l~~--~~~~~  168 (202)
                      +|+  |++++
T Consensus       886 fGVtiWElmT  895 (1177)
T KOG1025|consen  886 FGVTIWELMT  895 (1177)
T ss_pred             hhhhHHHHHh
Confidence            964  54444

>KOG1164|consensus

Probab=99.79  E-value=2.7e-18  Score=135.48  Aligned_cols=163  Identities=18%  Similarity=0.144  Sum_probs=124.2

Q ss_pred             HHHHHHHHHHHHhcCC-CccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHP-SDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~-h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ....|..++..+...+ ..++..+.+.+.   ..+.+.++||+.+|.+|.++....+.++++..++..++.|++.+|+++
T Consensus        62 ~l~~E~~vl~~l~~~~~~~~~~~~~~~G~---~~~~~~~iVM~l~G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~~l  138 (322)
T KOG1164|consen   62 VLKIEIQVLKKLEKKNGPSHFPKLLDHGR---STEDFNFIVMSLLGPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALEDL  138 (322)
T ss_pred             cchhHHHHHHHHhhhcCCCCCCEEEEecc---CCCceeEEEEeccCccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHHHH
Confidence            3456888888886321 248888888884   156799999999999999999877767899999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCC-c--ceeEEeeccccc--cccc-ccC--------CCCCCCCccchhhHHHHhhhhccC
Q psy320           84 HTKHNLVHTSIKPESIFFKADH-V--YIMTLINIQQAT--THQE-CHD--------QQSSSKTKSKIFCEILEQCRLNQD  149 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~-~--~~~~l~Dfg~a~--~~~~-~~~--------~~~~~~~~~~~ape~~~~~~~~~~  149 (202)
                      |+. |++||||||+|++++... .  ..+.+.|||+|+  .+.. .+.        .....||..|.++....+..    
T Consensus       139 H~~-G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~~H~~~e----  213 (322)
T KOG1164|consen  139 HSK-GFIHRDIKPENFVVGQSSRSEVRTLYLLDFGLARRFKYVGDSGGNLRPPRPQKGLFRGTLRYASINVHLGIE----  213 (322)
T ss_pred             Hhc-CcccCCcCHHHeeecCCCCcccceEEEEecCCCccccccCCCCcccccCCCCccCCCCccccccHHHhCCCc----
Confidence            995 999999999999999764 1  249999999999  3221 111        11245999999999887444    


Q ss_pred             CCCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCC
Q psy320          150 FRLDPRVDPTSIKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       150 ~~~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                        .+.+.|+||+..     .++ .+..|..||+.
T Consensus       214 --~~r~DDles~~Y-----~l~-el~~g~LPW~~  239 (322)
T KOG1164|consen  214 --QGRRDDLESLFY-----MLL-ELLKGSLPWEA  239 (322)
T ss_pred             --cCCchhhhhHHH-----HHH-HHhcCCCCCcc
Confidence              677899999654     223 34446666643

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.78  E-value=8.1e-19  Score=139.24  Aligned_cols=133  Identities=16%  Similarity=0.091  Sum_probs=95.6

Q ss_pred             hHHHHHHHHHHHHhcCCCcccee-eeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMK-LLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLN   81 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~-l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~   81 (202)
                      ..+.+|+++|+++ +|+  |++. ++++        ...|+||||+ |++|...   ..   ..   ...++.|++.+|.
T Consensus        66 ~~~~~E~~iL~~L-~h~--~iv~~l~~~--------~~~~LVmE~~~G~~L~~~---~~---~~---~~~~~~~i~~aL~  125 (365)
T PRK09188         66 HLAAREIRALKTV-RGI--GVVPQLLAT--------GKDGLVRGWTEGVPLHLA---RP---HG---DPAWFRSAHRALR  125 (365)
T ss_pred             HHHHHHHHHHHhc-cCC--CCCcEEEEc--------CCcEEEEEccCCCCHHHh---Cc---cc---hHHHHHHHHHHHH
Confidence            3467899999999 455  8774 4432        1479999999 8888622   11   11   1467889999999


Q ss_pred             HHHhhCCccccCC-CCCceeeecCCcceeEEeecccccccccccCCC---------CCCCCccchhhHHHHhhhhccCCC
Q psy320           82 HLHTKHNLVHTSI-KPESIFFKADHVYIMTLINIQQATTHQECHDQQ---------SSSKTKSKIFCEILEQCRLNQDFR  151 (202)
Q Consensus        82 ~lh~~~~ivH~dl-~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~---------~~~~~~~~~ape~~~~~~~~~~~~  151 (202)
                      |+|+. ||+|||| ||+|||++.++.  ++|+|||+|+.....+...         ...++..|.+||.+..........
T Consensus       126 ~lH~~-gIiHrDL~KP~NILv~~~~~--ikLiDFGlA~~~~~~~~~~~~~~~~d~~~~~~~~~~~~pe~~~~~~~~~~~~  202 (365)
T PRK09188        126 DLHRA-GITHNDLAKPQNWLMGPDGE--AAVIDFQLASVFRRRGALYRIAAYEDLRHLLKHKRTYAPDALTPRERKILAR  202 (365)
T ss_pred             HHHHC-CCeeCCCCCcceEEEcCCCC--EEEEECccceecccCcchhhhhhhhhhhhhhccCccCCcccCChhhhccccc
Confidence            99995 9999999 999999987766  9999999999775433221         235667788999987655433333


Q ss_pred             CCCCcchh
Q psy320          152 LDPRVDPT  159 (202)
Q Consensus       152 ~~~~~Diw  159 (202)
                      .+...|-|
T Consensus       203 ~~~~~dgW  210 (365)
T PRK09188        203 KSLPSRIW  210 (365)
T ss_pred             cccccCcE
Confidence            44456666

>KOG1163|consensus

Probab=99.76  E-value=2.7e-18  Score=125.77  Aligned_cols=145  Identities=13%  Similarity=0.120  Sum_probs=114.3

Q ss_pred             HHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhC
Q psy320            8 NLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKH   87 (202)
Q Consensus         8 ~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~   87 (202)
                      -|.++-..++...  .|+.+..++.    ++.+-.+||+.+|.||+++..--. ++|+..+++-.+.||+.-++|+|.+ 
T Consensus        59 yEskvY~iL~~g~--GiP~i~~y~~----e~~ynvlVMdLLGPsLEdLfnfC~-R~ftmkTvLMLaDQml~RiEyvH~r-  130 (341)
T KOG1163|consen   59 YESKVYRILQGGV--GIPHIRHYGT----EKDYNVLVMDLLGPSLEDLFNFCS-RRFTMKTVLMLADQMLSRIEYVHLR-  130 (341)
T ss_pred             HHHHHHHHhccCC--CCchhhhhcc----ccccceeeeeccCccHHHHHHHHh-hhhhHHhHHHHHHHHHHHHHHHHhh-
Confidence            4666666775444  7888888887    577999999999999999886433 5699999999999999999999997 


Q ss_pred             CccccCCCCCceeeecCCc-ceeEEeecccccccccccCC--------CCCCCCccchhhHHHHhhhhccCCCCCCCcch
Q psy320           88 NLVHTSIKPESIFFKADHV-YIMTLINIQQATTHQECHDQ--------QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDP  158 (202)
Q Consensus        88 ~ivH~dl~p~nil~~~~~~-~~~~l~Dfg~a~~~~~~~~~--------~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Di  158 (202)
                      +++||||||+|+|++.+.. .++.++|||+|+.+-...+.        ....||..|.+-....+..      -+.+.|+
T Consensus       131 ~fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaKky~d~~t~~HIpyre~r~ltGTaRYASinAh~g~e------qSRRDDm  204 (341)
T KOG1163|consen  131 NFIHRDIKPDNFLMGLGRHCNKLYLIDFGLAKKYRDIRTRQHIPYREDRNLTGTARYASINAHLGIE------QSRRDDM  204 (341)
T ss_pred             ccccccCCccceeeccccccceEEEEeccchhhhccccccccCccccCCccceeeeehhhhhhhhhh------hhhhhhh
Confidence            9999999999999997643 24999999999987653322        2457888888876665433      3457899


Q ss_pred             hhHHHHHH
Q psy320          159 TSIKMYTT  166 (202)
Q Consensus       159 wsl~~~~~  166 (202)
                      -|+|...|
T Consensus       205 eSvgYvLm  212 (341)
T KOG1163|consen  205 ESVGYVLM  212 (341)
T ss_pred             hhhcceee
Confidence            99987555

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.75  E-value=1.2e-17  Score=120.48  Aligned_cols=105  Identities=15%  Similarity=0.120  Sum_probs=83.6

Q ss_pred             ccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCC
Q psy320           50 ECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSS  129 (202)
Q Consensus        50 ~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~  129 (202)
                      |||.+++...+ +++++..+..++.|++.||.|||+. +      ||+||+++.++.  +++  ||.+......    ..
T Consensus         1 GsL~~~l~~~~-~~l~~~~~~~i~~qi~~~L~~lH~~-~------kp~Nil~~~~~~--~~~--fG~~~~~~~~----~~   64 (176)
T smart00750        1 VSLADILEVRG-RPLNEEEIWAVCLQCLRALRELHRQ-A------KSGNILLTWDGL--LKL--DGSVAFKTPE----QS   64 (176)
T ss_pred             CcHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHHHhc-C------CcccEeEcCccc--eee--ccceEeeccc----cC
Confidence            68999987653 4599999999999999999999996 7      999999988776  787  9998775432    23


Q ss_pred             CCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCCCC
Q psy320          130 SKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       130 ~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      .+++.|+|||.+..      ..++.++||||+|+.      +..+..|.++|.
T Consensus        65 ~g~~~y~aPE~~~~------~~~~~~~DiwSlG~i------l~elltg~~p~~  105 (176)
T smart00750       65 RVDPYFMAPEVIQG------QSYTEKADIYSLGIT------LYEALDYELPYN  105 (176)
T ss_pred             CCcccccChHHhcC------CCCcchhhHHHHHHH------HHHHHhCCCCcc
Confidence            57899999999984      347789999999863      224555666654

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>PRK10345 hypothetical protein; Provisional

Probab=99.74  E-value=2.5e-17  Score=121.76  Aligned_cols=109  Identities=12%  Similarity=0.090  Sum_probs=82.2

Q ss_pred             hHHHHHHHHHHHHhcC---CCccceeeeeeeEEecCCceEEEEEEccc---cccHHHHHHHcCCCCCCHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKH---PSDKLMKLLDHFQVTGINGTHVCTVTEIM---AECLCNYMIRQKFQPAPLVVAKIIVNQIL   77 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~---~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~---~~sL~~~~~~~~~~~~~~~~~~~~~~qi~   77 (202)
                      ....+|+++++.+. |   +||||++++++++.+...+.-..+|+||.   +++|.+++.+.   .+++.  ..++.|++
T Consensus        41 ~~~~rEi~~l~~L~-~~~~~h~nIvr~yg~~et~~g~g~v~~~I~e~~G~~~~tL~~~l~~~---~~~e~--~~~~~~~L  114 (210)
T PRK10345         41 KEIRRELKYYAHLS-RRLIDWSGIPRYYGTVETDCGTGYVYDVIADFDGKPSITLTEFAEQC---RYEED--VAQLRQLL  114 (210)
T ss_pred             HHHHHHHHHHHHhh-ccCCCCcccceeeEEEEeCCCCeEEEEEEecCCCCcchhHHHHHHcc---cccHh--HHHHHHHH
Confidence            34678999999994 3   47799999999986432233345899995   58999999653   36666  35678888


Q ss_pred             HHH-HHHHhhCCccccCCCCCceeeecCC--cceeEEeecccccc
Q psy320           78 EGL-NHLHTKHNLVHTSIKPESIFFKADH--VYIMTLINIQQATT  119 (202)
Q Consensus        78 ~~l-~~lh~~~~ivH~dl~p~nil~~~~~--~~~~~l~Dfg~a~~  119 (202)
                      .++ .|||+. +|+||||||+|||++..+  ...++|+|++.+..
T Consensus       115 ~~l~~yLh~~-~IvhrDlKp~NILl~~~~~~~~~~~LiDg~G~~~  158 (210)
T PRK10345        115 KKLKRYLLDN-RIVTMELKPQNILCQRISESEVIPVVCDNIGEST  158 (210)
T ss_pred             HHHHHHHHHC-CEeecCCCHHHEEEeccCCCCCcEEEEECCCCcc
Confidence            777 899996 999999999999998532  23599999544433

>KOG4158|consensus

Probab=99.74  E-value=2.5e-17  Score=128.51  Aligned_cols=139  Identities=14%  Similarity=0.187  Sum_probs=106.3

Q ss_pred             CccceeeeeeeEEec-----------------------CCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHH
Q psy320           21 SDKLMKLLDHFQVTG-----------------------INGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQIL   77 (202)
Q Consensus        21 h~~Iv~l~~~~~~~~-----------------------~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~   77 (202)
                      |||||++.++|...-                       .++...|+||..+..+|..++....   .+.....-++.|++
T Consensus       275 HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~g~~~tlylvMkrY~~tLr~yl~~~~---~s~r~~~~~laQlL  351 (598)
T KOG4158|consen  275 HPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGAGEPKTLYLVMKRYRQTLREYLWTRH---RSYRTGRVILAQLL  351 (598)
T ss_pred             CCCEEeehhhhhhhhccCCchhhhCcccccceecccccCCCceEEEehhcchhhHHHHHhcCC---CchHHHHHHHHHHH
Confidence            779999999985321                       1357899999999999999997654   77788888999999


Q ss_pred             HHHHHHHhhCCccccCCCCCceeeecCCcc--eeEEeecccccccccccCCC-------CCCCCccchhhHHHHhhhhcc
Q psy320           78 EGLNHLHTKHNLVHTSIKPESIFFKADHVY--IMTLINIQQATTHQECHDQQ-------SSSKTKSKIFCEILEQCRLNQ  148 (202)
Q Consensus        78 ~~l~~lh~~~~ivH~dl~p~nil~~~~~~~--~~~l~Dfg~a~~~~~~~~~~-------~~~~~~~~~ape~~~~~~~~~  148 (202)
                      .|+.|||+ +||.|||+|++|||+..+++.  .+.++|||.+-.-...+.+.       ...|.-..+|||+....+...
T Consensus       352 Eav~hL~~-hgvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~hGlqlpy~S~~Vd~GGNa~lmAPEi~ta~PGp~  430 (598)
T KOG4158|consen  352 EAVTHLHK-HGVAHRDLKSDNILLELDDDEIPQLVVADFGCCLADDNHGLQLPYESDEVDLGGNAKLMAPEIATAVPGPN  430 (598)
T ss_pred             HHHHHHHH-ccchhhcccccceEEEecCCCCcEEEEcccceeeeccccccccccccccccCCCcceecchhhhhcCCCCc
Confidence            99999999 599999999999999877553  48999999876544333222       235666789999998665221


Q ss_pred             CCCCCCCcchhhHHH
Q psy320          149 DFRLDPRVDPTSIKM  163 (202)
Q Consensus       149 ~~~~~~~~Diwsl~~  163 (202)
                      ..--..++|.|+.|-
T Consensus       431 avvny~kAD~WA~Ga  445 (598)
T KOG4158|consen  431 AVVNYEKADTWAAGA  445 (598)
T ss_pred             eeeccchhhhhhhhh
Confidence            111123899999964

>KOG1165|consensus

Probab=99.71  E-value=6.8e-17  Score=123.30  Aligned_cols=157  Identities=13%  Similarity=0.128  Sum_probs=128.0

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      ...|.+.-+.|...+  +|...+-+..    .+.+-.||+|.+|.||+++...-+ ++|+..++..++.||+.-++++|+
T Consensus        70 LrdEYr~YKlL~g~~--GIP~vYYFGq----eG~~NiLVidLLGPSLEDLFD~Cg-R~FSvKTV~miA~Qmi~rie~vH~  142 (449)
T KOG1165|consen   70 LRDEYRTYKLLGGTE--GIPQVYYFGQ----EGKYNILVIDLLGPSLEDLFDLCG-RRFSVKTVAMIAKQMITRIEYVHE  142 (449)
T ss_pred             HHHHHHHHHHHcCCC--CCCceeeecc----ccchhhhhhhhhCcCHHHHHHHhc-CcccHHhHHHHHHHHHHHHHHHHh
Confidence            456888888887666  9999888877    688999999999999999998766 679999999999999999999999


Q ss_pred             hCCccccCCCCCceeeecCCc---ceeEEeecccccccccccCCC--------CCCCCccchhhHHHHhhhhccCCCCCC
Q psy320           86 KHNLVHTSIKPESIFFKADHV---YIMTLINIQQATTHQECHDQQ--------SSSKTKSKIFCEILEQCRLNQDFRLDP  154 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~~---~~~~l~Dfg~a~~~~~~~~~~--------~~~~~~~~~ape~~~~~~~~~~~~~~~  154 (202)
                      + .+|.|||||+|+|++..+.   ..+.++|||.|+.+..+.+..        ...||..||+-....+.+      -+.
T Consensus       143 k-~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~YrDp~TkqHIPYrE~KSLsGTARYMSINTHlGrE------QSR  215 (449)
T KOG1165|consen  143 K-DLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKEYRDPKTKQHIPYREHKSLSGTARYMSINTHLGRE------QSR  215 (449)
T ss_pred             c-ceeecccCccceeecCCCCCCCceEEEEeccchhhhcCccccccCccccccccccceeeeEeeccccch------hhh
Confidence            7 9999999999999987543   248999999999876654332        458999999987777444      456


Q ss_pred             CcchhhHHHHHHHHHHHHHHHhcCCCCC
Q psy320          155 RVDPTSIKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       155 ~~Diwsl~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +.|+=|+|-.-|      ..++|..||-
T Consensus       216 RDDLEaLGHvFm------YFLRGsLPWQ  237 (449)
T KOG1165|consen  216 RDDLEALGHVFM------YFLRGSLPWQ  237 (449)
T ss_pred             hhhHHHhhhhhh------hhccCCCccc
Confidence            889999986333      5666777764

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.70  E-value=6e-16  Score=120.32  Aligned_cols=162  Identities=23%  Similarity=0.260  Sum_probs=122.7

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKF-QPAPLVVAKIIVNQILEGLN   81 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~-~~~~~~~~~~~~~qi~~~l~   81 (202)
                      ..+.+|+..+..+..++  +|+++.+.+.    .....+++++++ ++++.+++..... ..++......+..|++.++.
T Consensus        42 ~~~~~e~~~~~~~~~~~--~i~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  115 (384)
T COG0515          42 ERFLREIQILASLNHPP--NIVKLYDFFQ----DEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALE  115 (384)
T ss_pred             HHHHHHHHHHHHccCCc--ceeeEEEEEe----cCCEEEEEEecCCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHH
Confidence            34567777777775333  7999999996    344589999999 8999877765431 14899999999999999999


Q ss_pred             HHHhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-------CCCCCCCCccchhhHHHHhhhhccCCCCCC
Q psy320           82 HLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-------DQQSSSKTKSKIFCEILEQCRLNQDFRLDP  154 (202)
Q Consensus        82 ~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-------~~~~~~~~~~~~ape~~~~~~~~~~~~~~~  154 (202)
                      ++|.. +++|||+||+||+++..+. .++++|||.+.......       ......++..|++||......   ...+..
T Consensus       116 ~~H~~-~~~hrd~kp~nil~~~~~~-~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~t~~~~~pe~~~~~~---~~~~~~  190 (384)
T COG0515         116 YLHSK-GIIHRDIKPENILLDRDGR-VVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLS---LAYASS  190 (384)
T ss_pred             HHHhC-CeeccCCCHHHeeecCCCC-eEEEeccCcceecCCCCccccccccccccccccccCCHHHhcCCC---CCCCCc
Confidence            99996 9999999999999998762 39999999998654432       224568999999999998421   023566


Q ss_pred             CcchhhHHHHHHHHHHHHHHHhcCCCCC
Q psy320          155 RVDPTSIKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       155 ~~Diwsl~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      ..|+||+|+...      ....+..++.
T Consensus       191 ~~D~~s~g~~~~------~~~~~~~p~~  212 (384)
T COG0515         191 SSDIWSLGITLY------ELLTGLPPFE  212 (384)
T ss_pred             hHhHHHHHHHHH------HHHhCCCCCC
Confidence            899999984222      3555665543

>KOG0590|consensus

Probab=99.69  E-value=7.7e-18  Score=141.62  Aligned_cols=146  Identities=17%  Similarity=0.222  Sum_probs=114.7

Q ss_pred             CccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCcee
Q psy320           21 SDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIF  100 (202)
Q Consensus        21 h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil  100 (202)
                      |+|++..+..+..    .....-+|||+..+|+.++.+.+  ++....+.-++.|++.|++|+|+ +|+.|||+|++|++
T Consensus       380 h~~~~e~l~~~~~----~~~~~~~mE~~~~Dlf~~~~~~~--~~~~~e~~c~fKqL~~Gv~y~h~-~GiahrdlK~enll  452 (601)
T KOG0590|consen  380 HPNIIETLDIVQE----IDGILQSMEYCPYDLFSLVMSNG--KLTPLEADCFFKQLLRGVKYLHS-MGLAHRDLKLENLL  452 (601)
T ss_pred             CCchhhhHHHHhh----cccchhhhhcccHHHHHHHhccc--ccchhhhhHHHHHHHHHHHHHHh-cCceeccCccccEE
Confidence            6698888777763    33333349999339999998763  48889999999999999999999 59999999999999


Q ss_pred             eecCCcceeEEeecccccccccccCC-----CCCCCCccchhhHHHHhhhhccCCCCCC-CcchhhHHHHHHHHHHHHHH
Q psy320          101 FKADHVYIMTLINIQQATTHQECHDQ-----QSSSKTKSKIFCEILEQCRLNQDFRLDP-RVDPTSIKMYTTFCEILEQC  174 (202)
Q Consensus       101 ~~~~~~~~~~l~Dfg~a~~~~~~~~~-----~~~~~~~~~~ape~~~~~~~~~~~~~~~-~~Diwsl~~~~~~~~~~~~~  174 (202)
                      +...+.  +|++|||.+..+.-+.+.     ...+|...|+|||.+....      |++ .+|+||+|+.      +--+
T Consensus       453 ~~~~g~--lki~Dfg~~~vf~~~~e~~~~~~~g~~gS~pY~apE~~~~~~------ydpr~vDiwS~~ii------~~~m  518 (601)
T KOG0590|consen  453 VTENGI--LKIIDFGAASVFRYPWEKNIHESSGIVGSDPYLAPEVLTGKE------YDPRAVDVWSCGII------YICM  518 (601)
T ss_pred             EecCCc--eEEeecCcceeeccCcchhhhhhcCcccCCcCcCcccccccc------cCcchhhhhhccce------EEEE
Confidence            999886  999999999987655444     2458899999999999655      766 7999999762      2244


Q ss_pred             HhcCCCCCCCCCC
Q psy320          175 RLNHQDFRPDPRV  187 (202)
Q Consensus       175 ~~~~~~~~~~~~~  187 (202)
                      ..|+.+|+.....
T Consensus       519 ~~~~~~Wk~a~~~  531 (601)
T KOG0590|consen  519 ILGRFPWKVAKKS  531 (601)
T ss_pred             ecCCCcccccccc
Confidence            5567777654433

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.69  E-value=1.5e-16  Score=116.32  Aligned_cols=99  Identities=13%  Similarity=0.214  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH-H
Q psy320            7 TNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL-H   84 (202)
Q Consensus         7 ~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l-h   84 (202)
                      .+|++.+.++. ++  ++........    .  ..++||||+ ++++.......  ++++...+..++.|++.+|.++ |
T Consensus        67 ~~E~~~l~~l~-~~--~v~~p~~~~~----~--~~~iVmE~i~g~~l~~~~~~~--~~~~~~~~~~i~~qi~~~L~~l~H  135 (190)
T cd05147          67 EKEMRNLKRLV-TA--GIPCPEPILL----K--SHVLVMEFIGDDGWAAPRLKD--APLSESKARELYLQVIQIMRILYQ  135 (190)
T ss_pred             HHHHHHHHHHH-HC--CCCCCcEEEe----c--CCEEEEEEeCCCCCcchhhhc--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            45889999994 43  3322111111    1  237999999 55555443332  4589999999999999999999 6


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeeccccccc
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTH  120 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~  120 (202)
                      + .|++||||||+||+++. +.  ++|+|||+|...
T Consensus       136 ~-~giiHrDlkP~NIli~~-~~--v~LiDFG~a~~~  167 (190)
T cd05147         136 D-CRLVHADLSEYNLLYHD-GK--LYIIDVSQSVEH  167 (190)
T ss_pred             h-CCcccCCCCHHHEEEEC-Cc--EEEEEccccccC
Confidence            8 59999999999999983 44  999999998764

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>KOG1024|consensus

Probab=99.68  E-value=9.3e-16  Score=119.41  Aligned_cols=131  Identities=11%  Similarity=0.113  Sum_probs=103.9

Q ss_pred             CccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHc------CCCCCCHHHHHHHHHHHHHHHHHHHhhCCccccC
Q psy320           21 SDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQ------KFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTS   93 (202)
Q Consensus        21 h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~------~~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~d   93 (202)
                      |||+.++.+++.+   .....+..+.++ .++|..++..-      ..+.+.-.+...++.|+..|+.|||.. |++|.|
T Consensus       346 H~nll~V~~V~ie---~~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~~-~ViHkD  421 (563)
T KOG1024|consen  346 HPNLLSVLGVSIE---DYATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHNH-GVIHKD  421 (563)
T ss_pred             CCCccceeEEEee---ccCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHhc-Ccccch
Confidence            6799999999887   455777888888 79999998721      123366677889999999999999995 999999


Q ss_pred             CCCCceeeecCCcceeEEeecccccccccccCCC---CCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           94 IKPESIFFKADHVYIMTLINIQQATTHQECHDQQ---SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        94 l~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~---~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |...|++++...+  +||+|-.+++..-+.....   ..-....|+++|.+....      |+.++|+||+|+
T Consensus       422 iAaRNCvIdd~Lq--VkltDsaLSRDLFP~DYhcLGDnEnRPvkWMslEal~n~~------yssasDvWsfGV  486 (563)
T KOG1024|consen  422 IAARNCVIDDQLQ--VKLTDSALSRDLFPGDYHCLGDNENRPVKWMSLEALQNSH------YSSASDVWSFGV  486 (563)
T ss_pred             hhhhcceehhhee--EEeccchhccccCcccccccCCCCCCcccccCHHHHhhhh------hcchhhhHHHHH
Confidence            9999999987755  9999999998764322111   123455799999999555      888999999975

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.67  E-value=2.1e-16  Score=117.57  Aligned_cols=126  Identities=12%  Similarity=0.132  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCC----ceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGIN----GTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGL   80 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~----~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l   80 (202)
                      +.+|++.+.++ .|+  +|....+++......    ....++||||+ |.+|.++..      +++.    ...+++.++
T Consensus        82 ~e~Ea~~l~rL-~~~--GI~~~~d~~~~~~~~~~~~~~~~~lvmEyi~G~tL~~~~~------~~~~----~~~~i~~~l  148 (232)
T PRK10359         82 YENLIVQTDRV-RSE--GLASLNDFYLLAERKTLRYAHTYIMLIEYIEGVELNDMPE------ISED----VKAKIKASI  148 (232)
T ss_pred             HHHHHHHHHHH-HHC--CCCcceEeeeecccccccccCCeEEEEEEECCccHHHhhh------ccHH----HHHHHHHHH
Confidence            57888889999 455  999998887753211    23689999999 789977631      3332    356899999


Q ss_pred             HHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhH-HHHhhhhccCCCCCCCcchh
Q psy320           81 NHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCE-ILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        81 ~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape-~~~~~~~~~~~~~~~~~Diw  159 (202)
                      ..+|+. |++|+|++|+||+++.++   ++++|||.+.......            |.+ ...      .+.|+.++|+|
T Consensus       149 ~~lH~~-gi~H~Dikp~Nili~~~g---i~liDfg~~~~~~e~~------------a~d~~vl------er~y~~~~di~  206 (232)
T PRK10359        149 ESLHQH-GMVSGDPHKGNFIVSKNG---LRIIDLSGKRCTAQRK------------AKDRIDL------ERHYGIKNEIK  206 (232)
T ss_pred             HHHHHc-CCccCCCChHHEEEeCCC---EEEEECCCcccccchh------------hHHHHHH------HhHhccccccc
Confidence            999996 999999999999998765   9999999876542110            111 222      12356789999


Q ss_pred             hHHHHHH
Q psy320          160 SIKMYTT  166 (202)
Q Consensus       160 sl~~~~~  166 (202)
                      |+|++..
T Consensus       207 ~lg~~~~  213 (232)
T PRK10359        207 DLGYYLL  213 (232)
T ss_pred             ceeEeeh
Confidence            9986543

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.66  E-value=6.9e-16  Score=112.88  Aligned_cols=100  Identities=16%  Similarity=0.186  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            7 TNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         7 ~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      .+|.+.+.++. ++  +|.....+..    .  ..|+||||+ ++++.......  .+++...+..++.|++.++.++|+
T Consensus        67 ~~E~~~l~~l~-~~--~i~~p~~~~~----~--~~~lVmE~~~g~~~~~~~l~~--~~~~~~~~~~i~~~l~~~l~~lH~  135 (190)
T cd05145          67 EKEFRNLKRLY-EA--GVPVPEPILL----K--KNVLVMEFIGDDGSPAPRLKD--VPLEEEEAEELYEQVVEQMRRLYQ  135 (190)
T ss_pred             HHHHHHHHHHH-hC--CCCCceEEEe----c--CCEEEEEEecCCCchhhhhhh--ccCCHHHHHHHHHHHHHHHHHHHH
Confidence            46788888884 44  5533333322    1  248999999 55443332222  348889999999999999999999


Q ss_pred             -hCCccccCCCCCceeeecCCcceeEEeecccccccc
Q psy320           86 -KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQ  121 (202)
Q Consensus        86 -~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~  121 (202)
                       . |++||||||+||+++ ++.  ++|+|||++....
T Consensus       136 ~~-givHrDlkP~NIll~-~~~--~~liDFG~a~~~~  168 (190)
T cd05145         136 EA-GLVHGDLSEYNILYH-DGK--PYIIDVSQAVELD  168 (190)
T ss_pred             hC-CEecCCCChhhEEEE-CCC--EEEEEcccceecC
Confidence             7 999999999999998 555  9999999998764

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.66  E-value=9.2e-16  Score=112.21  Aligned_cols=95  Identities=16%  Similarity=0.133  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+++|+++..++  +|++++++.        ..+++|+|+ |.+|.+....        . ...++.|++.+|.++
T Consensus        47 l~~rE~~iL~~L~~~~--~vP~ll~~~--------~~~lvmeyI~G~~L~~~~~~--------~-~~~~~~qi~~~L~~l  107 (218)
T PRK12274         47 LARREALALRQLDGLP--RTPRLLHWD--------GRHLDRSYLAGAAMYQRPPR--------G-DLAYFRAARRLLQQL  107 (218)
T ss_pred             HHHHHHHHHHhcCCCC--CCCEEEEEc--------CEEEEEeeecCccHHhhhhh--------h-hHHHHHHHHHHHHHH
Confidence            4678999999995444  888888762        358999999 8888654311        1 134678999999999


Q ss_pred             HhhCCccccCC-CCCceeeecCCcceeEEeecccccccc
Q psy320           84 HTKHNLVHTSI-KPESIFFKADHVYIMTLINIQQATTHQ  121 (202)
Q Consensus        84 h~~~~ivH~dl-~p~nil~~~~~~~~~~l~Dfg~a~~~~  121 (202)
                      |+. ||+|||| ||+|||++.++.  ++|+|||+|....
T Consensus       108 H~~-GIvHrDL~kp~NILv~~~g~--i~LIDFG~A~~~~  143 (218)
T PRK12274        108 HRC-GVAHNDLAKEANWLVQEDGS--PAVIDFQLAVRGN  143 (218)
T ss_pred             HHC-cCccCCCCCcceEEEcCCCC--EEEEECCCceecC
Confidence            995 9999999 799999987776  9999999998654

>KOG0603|consensus

Probab=99.61  E-value=4.7e-16  Score=127.04  Aligned_cols=135  Identities=15%  Similarity=0.118  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            7 TNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         7 ~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      +.|..++..++.+|  ++++++..|+    .....++++++. +++|...+....  .+.+...+.+...++.++.++|+
T Consensus        44 ~~er~il~~~~~~~--f~v~lhyafq----t~~kl~l~ld~~rgg~lft~l~~~~--~f~~~~~~~~~aelaLald~lh~  115 (612)
T KOG0603|consen   44 KQERIILAFVHNTP--FLVKLHYAFQ----TDGKLYLILDFLRGGDLFTRLSKEV--MFDELDVAFYLAELALALDHLHK  115 (612)
T ss_pred             ccHHHHHhhccCCC--ceeeeeeeec----cccchhHhhhhcccchhhhccccCC--chHHHHHHHHHHHHHHHHhhcch
Confidence            34666777775566  9999999999    567999999999 889988776654  48889999999999999999999


Q ss_pred             hCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           86 KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      . ++++||+|++||+++.+|.  +++.|||.++.......   .+|+..|+|||+..+        ...++|.||+|.
T Consensus       116 l-~iiyrd~k~enilld~~Gh--i~~tdfglske~v~~~~---~cgt~eymApEI~~g--------h~~a~D~ws~gv  179 (612)
T KOG0603|consen  116 L-GIAYRDYKLENVLLLLEGH--IKLTDFGLSKEAVKEKI---ACGTYEYRAPEIING--------HLSAADWWSFGV  179 (612)
T ss_pred             h-HHHHhcccccceeecccCc--cccCCchhhhHhHhhhh---cccchhhhhhHhhhc--------cCCcccchhhhh
Confidence            5 9999999999999999998  99999999998753322   289999999999981        456899999975

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.59  E-value=2e-14  Score=108.70  Aligned_cols=106  Identities=12%  Similarity=0.095  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-c-ccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-A-ECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~-~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      .+.+|++.+.++ .+++..++..+++....+......++|||++ + .+|.+++...   .+++..    +.+++.++.+
T Consensus        86 r~~rE~~ll~~L-~~~gi~vP~pl~~~~~~~~~~~~~~lV~e~l~G~~~L~~~l~~~---~l~~~~----~~~i~~~l~~  157 (239)
T PRK01723         86 RAFAEFRLLAQL-YEAGLPVPRPIAARVVRHGLFYRADILIERIEGARDLVALLQEA---PLSEEQ----WQAIGQLIAR  157 (239)
T ss_pred             HHHHHHHHHHHH-HhCCCCCceeEeeeeeecCcceeeeEEEEecCCCCCHHHHHhcC---CCCHHH----HHHHHHHHHH
Confidence            456799999999 4554446777777554321222456999999 5 6898887542   356543    5689999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccc
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQ  121 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~  121 (202)
                      +|+. ||+|+||||+|||++.++.  ++|+|||.+....
T Consensus       158 lH~~-GI~HrDlkp~NILv~~~~~--v~LIDfg~~~~~~  193 (239)
T PRK01723        158 FHDA-GVYHADLNAHNILLDPDGK--FWLIDFDRGELRT  193 (239)
T ss_pred             HHHC-CCCCCCCCchhEEEcCCCC--EEEEECCCcccCC
Confidence            9995 9999999999999987765  9999999987753

>smart00090 RIO RIO-like kinase

Probab=99.52  E-value=4.6e-14  Score=106.53  Aligned_cols=101  Identities=17%  Similarity=0.204  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|++.+.++. +.+..+++.+++.        ..++||||+ +.+|.......  ..+....+..++.|++.++.++|
T Consensus        97 ~~~E~~~L~~L~-~~~i~~p~~~~~~--------~~~lV~E~~~g~~L~~~~~~~--~~~~~~~~~~i~~qi~~~l~~LH  165 (237)
T smart00090       97 AEKEFRNLQRLY-EAGVPVPKPIAWR--------RNVLVMEFIGGDGLPAPRLKD--VEPEEEEEFELYDDILEEMRKLY  165 (237)
T ss_pred             HHHHHHHHHHHH-hcCCCCCeeeEec--------CceEEEEEecCCccccccccc--CCcchHHHHHHHHHHHHHHHHHH
Confidence            357899999995 3222344444321        247999999 66666544222  23666778899999999999999


Q ss_pred             hhCC-ccccCCCCCceeeecCCcceeEEeecccccccc
Q psy320           85 TKHN-LVHTSIKPESIFFKADHVYIMTLINIQQATTHQ  121 (202)
Q Consensus        85 ~~~~-ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~  121 (202)
                      +. | ++|+||||+||+++ ++.  ++++|||.+....
T Consensus       166 ~~-g~iiH~Dikp~NIli~-~~~--i~LiDFg~a~~~~  199 (237)
T smart00090      166 KE-GELVHGDLSEYNILVH-DGK--VVIIDVSQSVELD  199 (237)
T ss_pred             hc-CCEEeCCCChhhEEEE-CCC--EEEEEChhhhccC
Confidence            96 9 99999999999998 555  9999999987653

>KOG1240|consensus

Probab=99.52  E-value=6.7e-15  Score=126.86  Aligned_cols=148  Identities=20%  Similarity=0.202  Sum_probs=111.3

Q ss_pred             CccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCcee
Q psy320           21 SDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIF  100 (202)
Q Consensus        21 h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil  100 (202)
                      +||++++.-+-.    ..+..|+|-+|...+|++.+..++.  +...+.+.++.|++.||..+|.. ||+|+|||.+|||
T Consensus        80 ~pn~lPfqk~~~----t~kAAylvRqyvkhnLyDRlSTRPF--L~~iEKkWiaFQLL~al~qcH~~-gVcHGDIKsENIL  152 (1431)
T KOG1240|consen   80 APNCLPFQKVLV----TDKAAYLVRQYVKHNLYDRLSTRPF--LVLIEKKWIAFQLLKALSQCHKL-GVCHGDIKSENIL  152 (1431)
T ss_pred             CCcccchHHHHH----hhHHHHHHHHHHhhhhhhhhccchH--HHHHHHHHHHHHHHHHHHHHHHc-CccccccccceEE
Confidence            449999988866    5667889999999999999877654  78888999999999999999995 9999999999999


Q ss_pred             eecCCcceeEEeecccccccccccCCC--------CCCCCccchhhHHHHhh----hhccCCC-CCCCcchhhHHHHHHH
Q psy320          101 FKADHVYIMTLINIQQATTHQECHDQQ--------SSSKTKSKIFCEILEQC----RLNQDFR-LDPRVDPTSIKMYTTF  167 (202)
Q Consensus       101 ~~~~~~~~~~l~Dfg~a~~~~~~~~~~--------~~~~~~~~~ape~~~~~----~~~~~~~-~~~~~Diwsl~~~~~~  167 (202)
                      +.+=+  .+.|+||..-+..--+....        .......|+|||-+-..    ...+..+ ..++.||+|+|+    
T Consensus       153 iTSWN--W~~LtDFAsFKPtYLPeDNPadf~fFFDTSrRRtCYiAPERFv~~~~~~~~~q~~~~L~paMDIFS~GC----  226 (1431)
T KOG1240|consen  153 ITSWN--WLYLTDFASFKPTYLPEDNPADFTFFFDTSRRRTCYIAPERFVSALGKTSVGQDAPLLTPAMDIFSAGC----  226 (1431)
T ss_pred             Eeeec--hhhhhcccccCCccCCCCCcccceEEEecCCceeeecChHhhhccccccccCCcccccChhhhhhhhhH----
Confidence            98754  48999998765432111111        11344579999998642    2222223 567899999984    


Q ss_pred             HHHHHHHHhcCCCCC
Q psy320          168 CEILEQCRLNHQDFR  182 (202)
Q Consensus       168 ~~~~~~~~~~~~~~~  182 (202)
                       .+++....|.|.|.
T Consensus       227 -ViaELf~Eg~PlF~  240 (1431)
T KOG1240|consen  227 -VIAELFLEGRPLFT  240 (1431)
T ss_pred             -HHHHHHhcCCCccc
Confidence             56677777777774

>KOG1033|consensus

Probab=99.51  E-value=1e-14  Score=117.20  Aligned_cols=113  Identities=19%  Similarity=0.267  Sum_probs=95.3

Q ss_pred             EEEEEEccc-cccHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccc
Q psy320           40 HVCTVTEIM-AECLCNYMIRQK-FQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQA  117 (202)
Q Consensus        40 ~~~lv~e~~-~~sL~~~~~~~~-~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a  117 (202)
                      ++|+.|++| ..+|.+++.+.. ...-+...++.++.|+..++.|   + +.+|+|+||.||++..+..  +||.|||+.
T Consensus       330 ~lyI~Mn~c~~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~y---k-~~ihrdlkp~nif~~~d~q--~kIgDFgl~  403 (516)
T KOG1033|consen  330 YLYIQMNLCEKETLEDWLRRRRTGEERSLSLMLDIFKQIAPAVEY---K-GLIHRDLKPSNIFFSDDDQ--LKIGDFGLV  403 (516)
T ss_pred             chhhhhhhhhhhhHHHHhhCCCcccccchhHHHHHHHhhccchhh---c-cchhhhccccccccccchh--hhhhhhhhe
Confidence            689999999 899999997433 3457778899999999999999   7 9999999999999988775  999999998


Q ss_pred             ccccccc-------CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHH
Q psy320          118 TTHQECH-------DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus       118 ~~~~~~~-------~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~  164 (202)
                      .......       ......+|.+|++||.+.+..      |+.++||||||+.
T Consensus       404 ts~~~~~~~~~~~a~~t~~~gt~~YmsPEQi~g~~------y~~kvdIyaLGli  451 (516)
T KOG1033|consen  404 TSQDKDETVAPAAASHTQQVGTLLYMSPEQIRGQQ------YSEKVDIYALGLI  451 (516)
T ss_pred             eecccCCcccchhhhhhhcccccccCCHHHHhhhh------hhhhcchhhHHHH
Confidence            8765433       222468999999999999655      8899999999763

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.50  E-value=1.2e-13  Score=116.10  Aligned_cols=96  Identities=15%  Similarity=0.146  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|++.++.+ +++  +++....++.    .....++||||+ +++|.+++.          ....++.+++.++.++
T Consensus       382 ~~~~E~~~l~~l-~~~--~i~~p~~~~~----~~~~~~lv~E~~~g~~L~~~l~----------~~~~~~~~i~~~L~~l  444 (535)
T PRK09605        382 RTRAEARLLSEA-RRA--GVPTPVIYDV----DPEEKTIVMEYIGGKDLKDVLE----------GNPELVRKVGEIVAKL  444 (535)
T ss_pred             HHHHHHHHHHhh-ccc--CCCeeEEEEE----eCCCCEEEEEecCCCcHHHHHH----------HHHHHHHHHHHHHHHH
Confidence            356788888888 454  7777665555    234578999999 999988774          3456889999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccc
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQ  121 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~  121 (202)
                      |+. |++|||+||+||+++ ++.  ++++|||.++...
T Consensus       445 H~~-giiHrDlkp~NILl~-~~~--~~liDFGla~~~~  478 (535)
T PRK09605        445 HKA-GIVHGDLTTSNFIVR-DDR--LYLIDFGLGKYSD  478 (535)
T ss_pred             HhC-CCccCCCChHHEEEE-CCc--EEEEeCcccccCC
Confidence            995 999999999999993 444  9999999998753

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.50  E-value=2e-13  Score=101.31  Aligned_cols=98  Identities=12%  Similarity=0.154  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|++.+..+. ++  +|.....++.    .....++||||+ |++|.+++....     . ....++.+++.+|.++|
T Consensus        46 ~~~E~~~l~~l~-~~--~i~~p~~~~~----~~~~~~lv~e~~~G~~L~~~~~~~~-----~-~~~~i~~~i~~~l~~lH  112 (211)
T PRK14879         46 TRREARIMSRAR-KA--GVNVPAVYFV----DPENFIIVMEYIEGEPLKDLINSNG-----M-EELELSREIGRLVGKLH  112 (211)
T ss_pred             HHHHHHHHHHHH-HC--CCCCCeEEEE----eCCCCEEEEEEeCCcCHHHHHHhcc-----H-HHHHHHHHHHHHHHHHH
Confidence            456888888884 44  6655555554    234678999999 899999886532     2 77889999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeeccccccc
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTH  120 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~  120 (202)
                      +. |++|+|++|.||+++ ++.  ++++|||.+...
T Consensus       113 ~~-~i~H~Dl~p~Nil~~-~~~--~~liDf~~a~~~  144 (211)
T PRK14879        113 SA-GIIHGDLTTSNMILS-GGK--IYLIDFGLAEFS  144 (211)
T ss_pred             hC-CcccCCCCcccEEEE-CCC--EEEEECCcccCC
Confidence            95 999999999999998 444  899999998764

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.46  E-value=3.4e-13  Score=99.16  Aligned_cols=95  Identities=16%  Similarity=0.184  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|++.+..+. +++.+++.++...      ....++||||+ |++|.+++....   .      .++.+++.+|.++|
T Consensus        44 ~~~E~~~l~~l~-~~~i~~p~~~~~~------~~~~~lv~e~~~g~~l~~~~~~~~---~------~~~~~i~~~l~~lH  107 (199)
T TIGR03724        44 TRNEARLLSRAR-KAGVNTPVVYDVD------PDNKTIVMEYIEGKPLKDVIEEGN---D------ELLREIGRLVGKLH  107 (199)
T ss_pred             HHHHHHHHHHHH-HCCCCCCEEEEEE------CCCCEEEEEEECCccHHHHHhhcH---H------HHHHHHHHHHHHHH
Confidence            346888888884 4322344443332      33568999999 999988765421   1      78899999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeeccccccc
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTH  120 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~  120 (202)
                      +. |++|+|++|.||+++ ++.  ++++|||.+...
T Consensus       108 ~~-gi~H~Dl~~~Nil~~-~~~--~~liDfg~a~~~  139 (199)
T TIGR03724       108 KA-GIVHGDLTTSNIIVR-DDK--LYLIDFGLGKYS  139 (199)
T ss_pred             HC-CeecCCCCcceEEEE-CCc--EEEEECCCCcCC
Confidence            96 999999999999998 554  999999998774

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>KOG1166|consensus

Probab=99.41  E-value=9e-13  Score=114.47  Aligned_cols=133  Identities=15%  Similarity=0.161  Sum_probs=103.9

Q ss_pred             cceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceee
Q psy320           23 KLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFF  101 (202)
Q Consensus        23 ~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~  101 (202)
                      .|..+..+..    -.+.-++|++|. .|||.+++...  +.+++..++++..||+..+..||. ++|||+||||+|+|+
T Consensus       755 ~~~~~~~a~~----~~~~S~lv~ey~~~Gtlld~~N~~--~~m~e~lv~~~~~qml~ive~lH~-~~IIHgDiKPDNfll  827 (974)
T KOG1166|consen  755 SIMHISSAHV----FQNASVLVSEYSPYGTLLDLINTN--KVMDEYLVMFFSCQMLRIVEHLHA-MGIIHGDIKPDNFLL  827 (974)
T ss_pred             chHHHHHHHc----cCCcceeeeeccccccHHHhhccC--CCCCchhhhHHHHHHHHHHHHHHh-cceecccCCcceeEe
Confidence            5666665555    234567999999 99999999733  569999999999999999999999 699999999999999


Q ss_pred             ecCC-----cceeEEeecccccccccccCCC---CCCCCccchhhHHHHhhhhccCCCCCCCcchhhH--HHHHHHH
Q psy320          102 KADH-----VYIMTLINIQQATTHQECHDQQ---SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI--KMYTTFC  168 (202)
Q Consensus       102 ~~~~-----~~~~~l~Dfg~a~~~~~~~~~~---~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl--~~~~~~~  168 (202)
                      ....     ..-++|+|||.|.-+.......   ..++|-.+-++|...+.+      .+-.+|.+.+  .++.|+.
T Consensus       828 ~~~~~~~~~~~~l~lIDfG~siDm~lfp~~~~F~~~~~td~f~C~EM~~grp------WtYq~DyfGlAa~~h~mLF  898 (974)
T KOG1166|consen  828 RREICADSDSKGLYLIDFGRSIDMKLFPDGTKFKAVWHTDLFDCIEMREGRP------WTYQIDYFGLAATVHVMLF  898 (974)
T ss_pred             ecccCCCCcccceEEEecccceeeeEcCCCcEEeeeeccccchhHHHhcCCC------CchhhhhHHHHHHHHHHHH
Confidence            7532     2238999999998765433332   457888888999998544      5558999988  5666654

>KOG0195|consensus

Probab=99.41  E-value=3.4e-13  Score=101.00  Aligned_cols=166  Identities=12%  Similarity=0.148  Sum_probs=117.0

Q ss_pred             HHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            7 TNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         7 ~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      ..|.-.|+.+ +  ||||+.+++.|.    +..++.++..|| .+||+++++...+--.+-.++..++..++.|+.|||+
T Consensus       235 neefp~lrif-s--hpnilpvlgacn----sppnlv~isq~mp~gslynvlhe~t~vvvd~sqav~faldiargmaflhs  307 (448)
T KOG0195|consen  235 NEEFPALRIF-S--HPNILPVLGACN----SPPNLVIISQYMPFGSLYNVLHEQTSVVVDHSQAVRFALDIARGMAFLHS  307 (448)
T ss_pred             hhhCcceeee-c--CCchhhhhhhcc----CCCCceEeeeeccchHHHHHHhcCccEEEecchHHHHHHHHHhhHHHHhh
Confidence            3444444445 3  559999999999    678999999999 9999999987764446678899999999999999999


Q ss_pred             hCCccc-cCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH-
Q psy320           86 KHNLVH-TSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM-  163 (202)
Q Consensus        86 ~~~ivH-~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~-  163 (202)
                      .-.++- --+.+..++++.+...++..+|--.+  ++   + ....-.+.|++||.+...+...+   -.++|+||+.+ 
T Consensus       308 lep~ipr~~lns~hvmidedltarismad~kfs--fq---e-~gr~y~pawmspealqrkped~n---~raadmwsfail  378 (448)
T KOG0195|consen  308 LEPMIPRFYLNSKHVMIDEDLTARISMADTKFS--FQ---E-VGRAYSPAWMSPEALQRKPEDLN---IRAADMWSFAIL  378 (448)
T ss_pred             cchhhhhhhcccceEEecchhhhheecccceee--ee---c-cccccCcccCCHHHHhcCchhcc---hhhhhHHHHHHH
Confidence            323443 47888889998886644444443222  11   1 12345678999999986552111   12799999954 


Q ss_pred             -HHHHH-----------------------------------HHHHHHHhcCCCCCCCCCCC
Q psy320          164 -YTTFC-----------------------------------EILEQCRLNHQDFRPDPRVD  188 (202)
Q Consensus       164 -~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~  188 (202)
                       |++.+                                   .++..|..-+|--||..+..
T Consensus       379 lwel~trevpfadlspmecgmkialeglrv~ippgis~hm~klm~icmnedpgkrpkfdmi  439 (448)
T KOG0195|consen  379 LWELNTREVPFADLSPMECGMKIALEGLRVHIPPGISRHMNKLMNICMNEDPGKRPKFDMI  439 (448)
T ss_pred             HHHhhccccccccCCchhhhhhhhhccccccCCCCccHHHHHHHHHHhcCCCCcCCCccee
Confidence             33322                                   77778887777777776654

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.39  E-value=1.4e-12  Score=95.99  Aligned_cols=96  Identities=16%  Similarity=0.199  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+..+..+. ++...++..++.        ...++||||+ +++|.+....        .....++.+++.++.++|
T Consensus        80 ~~~E~~~l~~l~-~~~i~v~~~~~~--------~~~~lv~e~~~g~~L~~~~~~--------~~~~~~~~~i~~~l~~lh  142 (198)
T cd05144          80 AQKEFAALKALY-EEGFPVPKPIDW--------NRHAVVMEYIDGVELYRVRVL--------EDPEEVLDEILEEIVKAY  142 (198)
T ss_pred             HHHHHHHHHHHH-HcCCCCCceeec--------CCceEEEEEeCCcchhhcccc--------ccHHHHHHHHHHHHHHHH
Confidence            456777788874 321234444332        1348999999 8888654321        345678889999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccc
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQ  121 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~  121 (202)
                      +. |++|+||+|+||+++.++.  ++|+|||.+....
T Consensus       143 ~~-gi~H~Dl~p~Nill~~~~~--~~liDfg~~~~~~  176 (198)
T cd05144         143 KH-GIIHGDLSEFNILVDDDEK--IYIIDWPQMVSTD  176 (198)
T ss_pred             HC-CCCcCCCCcccEEEcCCCc--EEEEECCccccCC
Confidence            95 9999999999999987766  9999999986653

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=99.36  E-value=4.1e-12  Score=92.68  Aligned_cols=103  Identities=15%  Similarity=0.166  Sum_probs=74.7

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccc-cHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAE-CLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~-sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ..+.+|++.|+++.+. +.+++..+++ .       .-++||||+++ .+..-..+.  ..++......+..+++.+|..
T Consensus        71 ~wa~kE~r~L~rl~~~-Gv~vP~pi~~-~-------~~~lvME~Ig~~~~~~~~Lkd--~~~~~~~~~~i~~~i~~~l~~  139 (197)
T cd05146          71 MWAEKEMHNLKRMQKA-GIPCPEVVVL-K-------KHVLVMSFIGDDQVPAPKLKD--AKLNDEEMKNAYYQVLSMMKQ  139 (197)
T ss_pred             HHHHHHHHHHHHHHHc-CCCCCeEEEe-c-------CCEEEEEEcCCCCccchhhhc--cccCHHHHHHHHHHHHHHHHH
Confidence            3456899999999765 3356666654 2       46799999954 232111111  125556677888999999999


Q ss_pred             H-HhhCCccccCCCCCceeeecCCcceeEEeecccccccc
Q psy320           83 L-HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQ  121 (202)
Q Consensus        83 l-h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~  121 (202)
                      + |+ +|++|+||++.||++.. +.  +.++|||+|....
T Consensus       140 l~H~-~glVHGDLs~~NIL~~~-~~--v~iIDF~qav~~~  175 (197)
T cd05146         140 LYKE-CNLVHADLSEYNMLWHD-GK--VWFIDVSQSVEPT  175 (197)
T ss_pred             HHHh-CCeecCCCCHHHEEEEC-Cc--EEEEECCCceeCC
Confidence            8 77 69999999999999974 34  9999999988764

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.35  E-value=2e-12  Score=99.17  Aligned_cols=131  Identities=15%  Similarity=0.078  Sum_probs=82.3

Q ss_pred             EEEEEccccccHHHHHHH---cCCC--CCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecc
Q psy320           41 VCTVTEIMAECLCNYMIR---QKFQ--PAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQ  115 (202)
Q Consensus        41 ~~lv~e~~~~sL~~~~~~---~~~~--~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg  115 (202)
                      .+++|+-+.+||.+++..   ....  ++.......+..|++..+.+||+. |++|+||+|+|++++.+|.  +.|+||+
T Consensus       114 ~~~l~P~~~~dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh~~-GlVHgdi~~~nfll~~~G~--v~Lg~F~  190 (288)
T PF14531_consen  114 RFLLMPRAQGDLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLHSY-GLVHGDIKPENFLLDQDGG--VFLGDFS  190 (288)
T ss_dssp             EEEEEE--SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHT-TEEEST-SGGGEEE-TTS---EEE--GG
T ss_pred             hhhccchhhhcHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHhhc-ceEecccceeeEEEcCCCC--EEEcChH
Confidence            367888888888888653   2211  122233345558999999999996 9999999999999999887  9999998


Q ss_pred             cccccccccCCCCCCCCccchhhHHHHhhhh--ccCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCCCC
Q psy320          116 QATTHQECHDQQSSSKTKSKIFCEILEQCRL--NQDFRLDPRVDPTSIKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       116 ~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~--~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      ...........  ...+..|.+||.......  .....++.+.|.|++|+.      +.+++-++.||.
T Consensus       191 ~~~r~g~~~~~--~~~~~~~~PPe~~~~~~~~~~~~~~~t~~~DaW~LG~~------ly~lWC~~lPf~  251 (288)
T PF14531_consen  191 SLVRAGTRYRC--SEFPVAFTPPELESCAGQFGQNNAPYTFATDAWQLGIT------LYSLWCGRLPFG  251 (288)
T ss_dssp             GEEETTEEEEG--GGS-TTTS-HHHHHHHTSCHHSEEEE-HHHHHHHHHHH------HHHHHHSS-STC
T ss_pred             HHeecCceeec--cCCCcccCChhhhhhhcccCcccceeeeccCHHHHHHH------HHHHHHccCCCC
Confidence            88776432221  233456788887764310  123456778999999873      336666666665

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.31  E-value=1.3e-11  Score=86.09  Aligned_cols=100  Identities=18%  Similarity=0.177  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+..++.++.+ ..+++++++++.    .+...++++||+ +.++..+         +......++.+++.++..+
T Consensus        37 ~~~~e~~~~~~l~~~-~~~~p~~~~~~~----~~~~~~~v~e~~~g~~~~~~---------~~~~~~~~~~~~~~~l~~l  102 (155)
T cd05120          37 DREREVAILQLLARK-GLPVPKVLASGE----SDGWSYLLMEWIEGETLDEV---------SEEEKEDIAEQLAELLAKL  102 (155)
T ss_pred             HHHHHHHHHHHHHHc-CCCCCeEEEEcC----CCCccEEEEEecCCeecccC---------CHHHHHHHHHHHHHHHHHH
Confidence            467899999999655 347888887776    346799999999 6655432         4456677889999999999


Q ss_pred             Hhh--CCccccCCCCCceeeecCCcceeEEeeccccccc
Q psy320           84 HTK--HNLVHTSIKPESIFFKADHVYIMTLINIQQATTH  120 (202)
Q Consensus        84 h~~--~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~  120 (202)
                      |..  .+++|+|++|+||+++..+.  ++++|||.+...
T Consensus       103 h~~~~~~i~H~Dl~~~Nil~~~~~~--~~l~Df~~~~~~  139 (155)
T cd05120         103 HQLPLLVLCHGDLHPGNILVDDGKI--LGIIDWEYAGYG  139 (155)
T ss_pred             hCCCceEEEecCCCcceEEEECCcE--EEEEecccccCC
Confidence            983  16999999999999998555  999999998654

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>KOG0606|consensus

Probab=99.28  E-value=3.8e-12  Score=109.85  Aligned_cols=80  Identities=15%  Similarity=0.217  Sum_probs=65.0

Q ss_pred             HHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccc-------c---------CCCCCCCCccchhhH
Q psy320           76 ILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQEC-------H---------DQQSSSKTKSKIFCE  139 (202)
Q Consensus        76 i~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~-------~---------~~~~~~~~~~~~ape  139 (202)
                      ++.+++|+|.. ||+|||+||+|.++..=+.  +|++|||+++...-.       +         .....++|+.|+|||
T Consensus       152 mvla~Eylh~y-givhrdlkpdnllIT~mGh--iKlTDfgLsk~GLms~atnl~eg~I~k~t~Ef~dKqvcgTPeyiaPe  228 (1205)
T KOG0606|consen  152 MVLAVEYLHSY-GIVHRDLKPDNLLITSMGH--IKLTDFGLSKKGLMSLATNLKEGHIEKDTHEFQDKQVCGTPEYIAPE  228 (1205)
T ss_pred             hhHHhHhhccC-CeecCCCCCCcceeeeccc--ccccchhhhhhhhhhccchhhhcchHHHHHHhhhccccCCccccChh
Confidence            47889999996 9999999999999998777  999999998863210       0         001238999999999


Q ss_pred             HHHhhhhccCCCCCCCcchhhHHHH
Q psy320          140 ILEQCRLNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus       140 ~~~~~~~~~~~~~~~~~Diwsl~~~  164 (202)
                      +....      .|++++|+|++|+.
T Consensus       229 Vilrq------gygkpvdwwamGiI  247 (1205)
T KOG0606|consen  229 VILRQ------GYGKPVDWWAMGII  247 (1205)
T ss_pred             hhhhh------ccCCCccHHHHHHH
Confidence            99944      49999999999763

>KOG1023|consensus

Probab=99.25  E-value=4.4e-11  Score=97.57  Aligned_cols=160  Identities=17%  Similarity=0.224  Sum_probs=117.7

Q ss_pred             CccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhCCc-cccCCCCCc
Q psy320           21 SDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNL-VHTSIKPES   98 (202)
Q Consensus        21 h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~~i-vH~dl~p~n   98 (202)
                      |.|+.++.|.+.    ++...+.|.+|+ .|+|.+.+.... -.++.-....+.+.++.||.|+|.- .+ .|+.+++.|
T Consensus         6 h~n~~~f~g~~~----~~~~~~~i~~~c~rGsl~D~i~~~~-~~~d~~F~~s~~rdi~~Gl~ylh~s-~i~~hg~l~s~n   79 (484)
T KOG1023|consen    6 HDNLNKFIGASV----DGPEMIVIWEYCSRGSLLDILSNED-IKLDYFFILSFIRDISKGLAYLHNS-PIGYHGALKSSN   79 (484)
T ss_pred             hhhhhhheeeEe----cCCceEEEEeeecCccHHhHHhccc-cCccHHHHHHHHHHHHHHHHHHhcC-cceeeeeecccc
Confidence            559999999999    567999999999 999999998744 3477777788889999999999995 44 999999999


Q ss_pred             eeeecCCcceeEEeecccccccccc---cCCCCCCCCccchhhHHHHhhhhccC-CCCCCCcchhhHHH--HHHHH----
Q psy320           99 IFFKADHVYIMTLINIQQATTHQEC---HDQQSSSKTKSKIFCEILEQCRLNQD-FRLDPRVDPTSIKM--YTTFC----  168 (202)
Q Consensus        99 il~~~~~~~~~~l~Dfg~a~~~~~~---~~~~~~~~~~~~~ape~~~~~~~~~~-~~~~~~~Diwsl~~--~~~~~----  168 (202)
                      ++++..-  .+|++|||+.......   ...........|.|||.+........ ...+++.|+||+++  ++++.    
T Consensus        80 Clvd~~w--~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPellr~~~~~~~~~~~~~~gdiYs~~ii~~ei~~r~~~  157 (484)
T KOG1023|consen   80 CLVDSRW--VLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELLRGALSQSLESALTQKGDIYSFGIIMYEILFRSGP  157 (484)
T ss_pred             ceeeeeE--EEEechhhhcccccccccccccchhHHHHhccCHHHhcccccccccccccccCCeehHHHHHHHHHhccCc
Confidence            9998654  4999999998876421   11112234446899999986532111 12356899999965  33333    


Q ss_pred             -----------HHHHHHHh-cCCCCCCCCCCC
Q psy320          169 -----------EILEQCRL-NHQDFRPDPRVD  188 (202)
Q Consensus       169 -----------~~~~~~~~-~~~~~~~~~~~~  188 (202)
                                 +++..+.. +..++||+....
T Consensus       158 ~~~~~~~~~~~eii~~~~~~~~~~~rP~i~~~  189 (484)
T KOG1023|consen  158 FDLRNLVEDPDEIILRVKKGGSNPFRPSIELL  189 (484)
T ss_pred             cccccccCChHHHHHHHHhcCCCCcCcchhhh
Confidence                       46666665 677777776543

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.24  E-value=4.6e-11  Score=86.93  Aligned_cols=97  Identities=19%  Similarity=0.205  Sum_probs=65.7

Q ss_pred             HHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHH-HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            8 NLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLC-NYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         8 ~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~-~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      .|.+.+..+.+. +..+.+.++..        ..++||||+ ++++. ..+....   .. ..+..++.+++.++.++|.
T Consensus        66 ~e~~~l~~l~~~-~~~~~~~~~~~--------~~~lv~e~~~g~~~~~~~l~~~~---~~-~~~~~~~~~~~~~l~~lh~  132 (187)
T cd05119          66 KEFRNLKRLYEA-GVPVPKPIDLN--------RHVLVMEFIGGDGIPAPRLKDVR---LL-EDPEELYDQILELMRKLYR  132 (187)
T ss_pred             HHHHHHHHHHHc-CCCCCceEecC--------CCEEEEEEeCCCCccChhhhhhh---hc-ccHHHHHHHHHHHHHHHhh
Confidence            455556666322 12344443321        358999999 52221 1111110   11 5678899999999999999


Q ss_pred             -hCCccccCCCCCceeeecCCcceeEEeecccccccc
Q psy320           86 -KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQ  121 (202)
Q Consensus        86 -~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~  121 (202)
                       . |++|+||+|+||+++ ++.  ++++|||.+....
T Consensus       133 ~~-~ivH~Dl~p~Nili~-~~~--~~liDfg~a~~~~  165 (187)
T cd05119         133 EA-GLVHGDLSEYNILVD-DGK--VYIIDVPQAVEID  165 (187)
T ss_pred             cc-CcCcCCCChhhEEEE-CCc--EEEEECccccccc
Confidence             6 999999999999999 555  9999999997654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>KOG0590|consensus

Probab=99.20  E-value=2.2e-12  Score=108.98  Aligned_cols=131  Identities=15%  Similarity=0.147  Sum_probs=107.7

Q ss_pred             CccceeeeeeeEEecCCceEEEEEEccc-cccHHHHH-HHcCCCCCCHHHHHHHHHHHHHHHHHHH-hhCCccccCCCCC
Q psy320           21 SDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYM-IRQKFQPAPLVVAKIIVNQILEGLNHLH-TKHNLVHTSIKPE   97 (202)
Q Consensus        21 h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~-~~~~~~~~~~~~~~~~~~qi~~~l~~lh-~~~~ivH~dl~p~   97 (202)
                      |.|++.+++...    +....++.+++. ++++.+.+ .... ...+...+..++.|+..++.|+| . .++.|+|++|+
T Consensus        80 h~n~~~~~~~~~----~~~~~~~~~~~s~g~~~f~~i~~~~~-~~~~~~~~~~~~~ql~s~l~~~H~~-~~~~h~~ikP~  153 (601)
T KOG0590|consen   80 HSNTVHMIEPSS----SPRSYLLSLSYSDGGSLFSKISHPDS-TGTSSSSASRYLPQLNSGLSYLHPE-NGVTHRDIKPS  153 (601)
T ss_pred             cccccccCCccC----CCcccccccCcccccccccccccCCc-cCCCCcchhhhhhhhccCccccCcc-cccccCCCCCc
Confidence            559999999988    677999999999 89998877 3332 24788889999999999999999 7 59999999999


Q ss_pred             ceeeecCC-cceeEEeeccccccccc-ccCCC---CCCC-CccchhhHHHHhhhhccCCCCCCCcchhhHHHH
Q psy320           98 SIFFKADH-VYIMTLINIQQATTHQE-CHDQQ---SSSK-TKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus        98 nil~~~~~-~~~~~l~Dfg~a~~~~~-~~~~~---~~~~-~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~  164 (202)
                      |.+++..+ .  ++++|||+|..+.. .+...   ..++ ++.|.|||......     -..+..|+||+|+.
T Consensus       154 n~~l~~s~~~--l~~~df~~At~~~~~~g~~~~~~~~~g~s~~y~a~E~~~~~~-----~~~~~~d~~S~g~~  219 (601)
T KOG0590|consen  154 NSLLDESGSA--LKIADFGLATAYRNKNGAERSLKDRCGSSPPYGAPEHLSGKA-----YRGPSVDVWSLGIV  219 (601)
T ss_pred             cchhccCCCc--ccCCCchhhccccccCCcceeeecccCCCCCCCCcccccchh-----hcCCCccccccccc
Confidence            99999888 5  99999999998876 44333   3477 99999999998532     12558999999873

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=99.15  E-value=1.2e-09  Score=83.74  Aligned_cols=113  Identities=10%  Similarity=0.128  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEe-cCCceEEEEEEccc-c-ccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVT-GINGTHVCTVTEIM-A-ECLCNYMIRQKFQPAPLVVAKIIVNQILEGLN   81 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~-~~~~~~~~lv~e~~-~-~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~   81 (202)
                      .+.+|.+.+.++.... -..+....++... +.....-++|||++ + .+|.+++........+......++.+++..+.
T Consensus        74 ~a~rE~~~l~~L~~~G-IptP~pVa~~e~~~~~~~~~s~LVte~l~~~~sL~~~~~~~~~~~~~~~~~~~ll~~la~~i~  152 (268)
T PRK15123         74 GADREWRAIHRLHEVG-VDTMTGVAFGERGSNPATRTSFIITEDLAPTISLEDYCADWATNPPDPRLKRMLIKRVATMVR  152 (268)
T ss_pred             HHHHHHHHHHHHHHcC-CCCCCeeEEEEecCCCccceeEEEEeeCCCCccHHHHHHhhcccCCCHHHHHHHHHHHHHHHH
Confidence            4678999998886442 2333444444321 11134678999999 4 37999886432233566778899999999999


Q ss_pred             HHHhhCCccccCCCCCceeeec-----CCcceeEEeecccccc
Q psy320           82 HLHTKHNLVHTSIKPESIFFKA-----DHVYIMTLINIQQATT  119 (202)
Q Consensus        82 ~lh~~~~ivH~dl~p~nil~~~-----~~~~~~~l~Dfg~a~~  119 (202)
                      -||.. |++|+|+++.|||++.     ++...+.++||+.+..
T Consensus       153 ~LH~~-Gi~HgDL~~~NiLl~~~~~~~~~~~~~~LIDl~r~~~  194 (268)
T PRK15123        153 DMHAA-GINHRDCYICHFLLHLPFPGREEDLKLSVIDLHRAQI  194 (268)
T ss_pred             HHHHC-cCccCCCChhhEEEeccccCCCCCceEEEEECCcccc
Confidence            99995 9999999999999985     2334599999998864

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.12  E-value=5.1e-10  Score=79.81  Aligned_cols=98  Identities=12%  Similarity=0.150  Sum_probs=73.0

Q ss_pred             chHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Q psy320            3 TNYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLN   81 (202)
Q Consensus         3 ~~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~   81 (202)
                      +....+|++++.+++.. .-+++.++++..      ....++|||. |..|.+.+...     .    ..+++.+-.-+.
T Consensus        43 r~Rt~~Earil~~a~~~-GV~~P~v~dvD~------~~~~I~me~I~G~~lkd~l~~~-----~----~~~~r~vG~~vg  106 (204)
T COG3642          43 RERTRREARILAKAREA-GVPVPIVYDVDP------DNGLIVMEYIEGELLKDALEEA-----R----PDLLREVGRLVG  106 (204)
T ss_pred             HHHHHHHHHHHHHHHHc-CCCCCeEEEEcC------CCCEEEEEEeCChhHHHHHHhc-----c----hHHHHHHHHHHH
Confidence            34556899999998655 345666666643      4566999999 77777787654     1    234555566677


Q ss_pred             HHHhhCCccccCCCCCceeeecCCcceeEEeeccccccc
Q psy320           82 HLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTH  120 (202)
Q Consensus        82 ~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~  120 (202)
                      -||. .||+|+||.++||++..++   +.++|||++...
T Consensus       107 ~lH~-~givHGDLTtsNiIl~~~~---i~~IDfGLg~~s  141 (204)
T COG3642         107 KLHK-AGIVHGDLTTSNIILSGGR---IYFIDFGLGEFS  141 (204)
T ss_pred             HHHh-cCeecCCCccceEEEeCCc---EEEEECCccccc
Confidence            7999 4999999999999998754   899999998764

>KOG1266|consensus

Probab=99.09  E-value=1.3e-10  Score=89.40  Aligned_cols=169  Identities=18%  Similarity=0.203  Sum_probs=114.3

Q ss_pred             CccceeeeeeeEEecC-CceEEEEEEccc-cccHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHHHHhhCC--ccccCC
Q psy320           21 SDKLMKLLDHFQVTGI-NGTHVCTVTEIM-AECLCNYMIRQK--FQPAPLVVAKIIVNQILEGLNHLHTKHN--LVHTSI   94 (202)
Q Consensus        21 h~~Iv~l~~~~~~~~~-~~~~~~lv~e~~-~~sL~~~~~~~~--~~~~~~~~~~~~~~qi~~~l~~lh~~~~--ivH~dl   94 (202)
                      |.|+++++.++..... +.....+++||+ .+++.+++++..  ...++....++|+.||++||.|||+ |.  ++|+++
T Consensus       126 HsnlvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLhs-~~Ppiihgnl  204 (458)
T KOG1266|consen  126 HSNLVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLHS-CDPPIIHGNL  204 (458)
T ss_pred             HHHHHHHHHhhcccccccccceEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhc-cCCccccCCc
Confidence            5599999999986443 456788999999 999999998654  2347888899999999999999999 74  899999


Q ss_pred             CCCceeeecCCcceeEEeecccccccc-----cccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHHHHH-
Q psy320           95 KPESIFFKADHVYIMTLINIQQATTHQ-----ECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTTFC-  168 (202)
Q Consensus        95 ~p~nil~~~~~~~~~~l~Dfg~a~~~~-----~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~~~~-  168 (202)
                      .-+.|++..++-  +|+..-.-.....     ...+.....+.++|.+||.=.      ....+.++|||++|+-.+-. 
T Consensus       205 Tc~tifiq~ngL--Ikig~~ap~s~h~s~~~~~~~Ek~~~~~~~g~~a~~sg~------~tn~~~a~dIy~fgmcAlema  276 (458)
T KOG1266|consen  205 TCDTIFIQHNGL--IKIGSVAPDSTHPSVNSTREAEKSVNTSLPGFSAPESGT------TTNTTGASDIYKFGMCALEMA  276 (458)
T ss_pred             chhheeecCCce--EEecccCccccchhhhhhhHhhhhccccCCccccCCcCc------ccccccchhhhhhhHHHHHHH
Confidence            999999986553  6654321111110     011111234556677776533      12234589999998643322 


Q ss_pred             --------------------------------HHHHHHHhcCCCCCCCCCCCCCcccceeee
Q psy320          169 --------------------------------EILEQCRLNHQDFRPDPRVDPTSIKMYTVA  198 (202)
Q Consensus       169 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (202)
                                                      ..+..|..|.|.-||+.+.....+..+.|-
T Consensus       277 ilEiq~tnseS~~~~ee~ia~~i~~len~lqr~~i~kcl~~eP~~rp~ar~llfHpllfeVh  338 (458)
T KOG1266|consen  277 ILEIQSTNSESKVEVEENIANVIIGLENGLQRGSITKCLEGEPNGRPDARLLLFHPLLFEVH  338 (458)
T ss_pred             HheeccCCCcceeehhhhhhhheeeccCccccCcCcccccCCCCCCcchhhhhcCceeeecc
Confidence                                            455666667777777766665555555443

>KOG3087|consensus

Probab=99.08  E-value=1.4e-09  Score=77.54  Aligned_cols=110  Identities=12%  Similarity=0.156  Sum_probs=80.1

Q ss_pred             chHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccc--cHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Q psy320            3 TNYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAE--CLCNYMIRQKFQPAPLVVAKIIVNQILEGL   80 (202)
Q Consensus         3 ~~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~--sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l   80 (202)
                      +..-++|++.|.++..- ....+.++  |.    +...-+++|||..|  ++.+++...............+++.+-..+
T Consensus        54 r~Rt~~Ear~l~k~~~~-GI~~P~l~--~~----D~~~~~i~ME~~~g~~~vk~~i~~~~~~~~~d~~~~~~~~~iG~~i  126 (229)
T KOG3087|consen   54 RKRTKQEARLLAKCRAL-GIPAPRLI--FI----DTYGGQIYMEFIDGASTVKDFILSTMEDESEDEGLAELARRIGELI  126 (229)
T ss_pred             HHHHHHHHHHHHHHHHh-CCCCceEE--EE----ecCCCeEEEEeccchhHHHHHHHHHccCcccchhHHHHHHHHHHHH
Confidence            34556788888887533 22333332  22    23355699999955  889988876644344444578889999999


Q ss_pred             HHHHhhCCccccCCCCCceeeecCCcc-eeEEeeccccccc
Q psy320           81 NHLHTKHNLVHTSIKPESIFFKADHVY-IMTLINIQQATTH  120 (202)
Q Consensus        81 ~~lh~~~~ivH~dl~p~nil~~~~~~~-~~~l~Dfg~a~~~  120 (202)
                      .-||.. +++|+||..+||++..++.. .+.++|||++...
T Consensus       127 gklH~n-diiHGDLTTSNill~~~~~~~~~~lIdfgls~~s  166 (229)
T KOG3087|consen  127 GKLHDN-DIIHGDLTTSNILLRSDGNQITPILIDFGLSSVS  166 (229)
T ss_pred             HHhhhC-CeecccccccceEEecCCCcCceEEEeecchhcc
Confidence            999997 99999999999999987752 2589999998664

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=99.08  E-value=4.1e-09  Score=78.08  Aligned_cols=113  Identities=13%  Similarity=0.174  Sum_probs=86.2

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-c-ccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-A-ECLCNYMIRQKFQPAPLVVAKIIVNQILEGLN   81 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~-~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~   81 (202)
                      ..+.+|...+.++.+. +-.+++.+++..........-++|+|++ + .+|.+++.....  .+......++.+++..+.
T Consensus        56 ~ra~~E~~~~~~L~~~-Gi~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~~~~~--~~~~~~~~ll~~l~~~i~  132 (206)
T PF06293_consen   56 SRAKREWRNLQRLREA-GIPTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQQWEQ--LDPSQRRELLRALARLIA  132 (206)
T ss_pred             hHHHHHHHHHHHHHHc-CCCCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHHhhcc--cchhhHHHHHHHHHHHHH
Confidence            3567788888888654 3345666666654322235678999999 4 589999876432  566778889999999999


Q ss_pred             HHHhhCCccccCCCCCceeeecCC-cceeEEeeccccccc
Q psy320           82 HLHTKHNLVHTSIKPESIFFKADH-VYIMTLINIQQATTH  120 (202)
Q Consensus        82 ~lh~~~~ivH~dl~p~nil~~~~~-~~~~~l~Dfg~a~~~  120 (202)
                      -||.. ||+|+|+++.|||++.++ ...+.++||+-++..
T Consensus       133 ~lH~~-gi~H~Dl~~~NILv~~~~~~~~~~lIDld~~~~~  171 (206)
T PF06293_consen  133 KLHDA-GIYHGDLNPSNILVDPDDGQYRFYLIDLDRMRFR  171 (206)
T ss_pred             HHHHC-cCCCCCCCcccEEEeCCCCceeEEEEcchhceeC
Confidence            99995 999999999999999876 334999999987764

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=99.08  E-value=1.7e-10  Score=83.84  Aligned_cols=102  Identities=17%  Similarity=0.199  Sum_probs=65.2

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEcccc--ccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMA--ECLCNYMIRQKFQPAPLVVAKIIVNQILEGLN   81 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~--~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~   81 (202)
                      ..+.+|.+.|+++.+. +-++++.+++-        .-++||||++  |.....+....   ++......++.+++..+.
T Consensus        53 ~~~~~E~~~L~~l~~~-Gv~vP~p~~~~--------~~~ivME~I~~~G~~~~~l~~~~---~~~~~~~~~~~~il~~~~  120 (188)
T PF01163_consen   53 EWAKKEFRNLKRLYEA-GVPVPKPYDYN--------RNVIVMEYIGEDGVPLPRLKDVD---LSPEEPKELLEEILEEII  120 (188)
T ss_dssp             HHHHHHHHHHHHCCCT-T-SS--EEEEE--------TTEEEEE--EETTEEGGCHHHCG---GGGSTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHC-CccCCcEEEEe--------CCEEEEEecCCCccchhhHHhcc---ccchhHHHHHHHHHHHHH
Confidence            4567899999999654 23566666442        2469999995  43333333321   223456667788888666


Q ss_pred             HH-HhhCCccccCCCCCceeeecCCcceeEEeecccccccc
Q psy320           82 HL-HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQ  121 (202)
Q Consensus        82 ~l-h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~  121 (202)
                      .+ |. +|++|+|+++.||+++.+ .  +.++|||++....
T Consensus       121 ~~~~~-~givHGDLs~~NIlv~~~-~--~~iIDf~qav~~~  157 (188)
T PF01163_consen  121 KMLHK-AGIVHGDLSEYNILVDDG-K--VYIIDFGQAVDSS  157 (188)
T ss_dssp             HHHHC-TTEEESS-STTSEEEETT-C--EEE--GTTEEETT
T ss_pred             HHHHh-cCceecCCChhhEEeecc-e--EEEEecCcceecC
Confidence            64 57 699999999999999876 4  9999999987753

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>KOG1243|consensus

Probab=99.05  E-value=2.2e-09  Score=89.34  Aligned_cols=101  Identities=21%  Similarity=0.232  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      ..+.++.|+.+ +  ||||+++++.++.    ....|+|+|.+. .|..++++     +....+...+.||+.||.+||.
T Consensus        56 ~~~A~k~lKtl-R--HP~Il~yL~t~e~----~~~~ylvTErV~-Pl~~~lk~-----l~~~~v~~Gl~qIl~AL~FL~~  122 (690)
T KOG1243|consen   56 AKRAVKRLKTL-R--HPNILSYLDTTEE----EGTLYLVTERVR-PLETVLKE-----LGKEEVCLGLFQILAALSFLND  122 (690)
T ss_pred             HHHHHHHhhhc-c--Cchhhhhhhhhcc----cCceEEEeeccc-cHHHHHHH-----hHHHHHHHHHHHHHHHHHHHhc
Confidence            45667777777 3  5599999999994    559999999982 13334444     3356777888999999999997


Q ss_pred             hCCccccCCCCCceeeecCCcceeEEeecccccccc
Q psy320           86 KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQ  121 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~  121 (202)
                      +|+++|+++.-..++++.+|.  .||.+|..+....
T Consensus       123 d~~lvHgNv~~~SVfVn~~Ge--WkLggle~v~~~~  156 (690)
T KOG1243|consen  123 DCNLVHGNVCKDSVFVNESGE--WKLGGLELVSKAS  156 (690)
T ss_pred             cCCeeeccEeeeeEEEcCCCc--EEEeeeEEEeccc
Confidence            789999999999999999988  9999998886654

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=99.00  E-value=1.6e-09  Score=88.87  Aligned_cols=106  Identities=11%  Similarity=0.121  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHhcC-CCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHH-HHHH
Q psy320            6 ATNLIKTLIEIQKH-PSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILE-GLNH   82 (202)
Q Consensus         6 ~~~e~~~l~~l~~~-~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~-~l~~   82 (202)
                      +.+|++.+.++++. .+.+-+.+-.++..   .....++||||+ |.+|.++...... ...   ...++.+++. .+..
T Consensus       200 f~~Ea~n~~~~~~~~~~~~~v~vP~v~~~---~~~~~vLvmE~i~G~~L~~~~~~~~~-~~~---~~~ia~~~~~~~l~q  272 (437)
T TIGR01982       200 LRREAANASELGENFKNDPGVYVPEVYWD---RTSERVLTMEWIDGIPLSDIAALDEA-GLD---RKALAENLARSFLNQ  272 (437)
T ss_pred             HHHHHHHHHHHHHhcCCCCCEEeCCEehh---hcCCceEEEEeECCcccccHHHHHhc-CCC---HHHHHHHHHHHHHHH
Confidence            34566666666432 11122333333321   122468999999 8898887653221 122   2334555554 4677


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccc
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQ  121 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~  121 (202)
                      +|.. |++|+|++|.||+++.++.  ++++|||.+....
T Consensus       273 l~~~-g~~H~D~hPgNilv~~~g~--i~liDfG~~~~l~  308 (437)
T TIGR01982       273 VLRD-GFFHADLHPGNIFVLKDGK--IIALDFGIVGRLS  308 (437)
T ss_pred             HHhC-CceeCCCCcccEEECCCCc--EEEEeCCCeeECC
Confidence            8884 9999999999999988776  9999999998764

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>cd05151 ChoK Choline Kinase (ChoK)

Probab=98.98  E-value=1.3e-09  Score=77.88  Aligned_cols=93  Identities=17%  Similarity=0.108  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|++.++.+.+..  .+++++..+.    .  ..++||||+ |.++.+.    .   .   .....+.+++.++..||
T Consensus        39 ~~~E~~~l~~l~~~~--~~P~~~~~~~----~--~~~lv~e~i~G~~l~~~----~---~---~~~~~~~~l~~~l~~LH  100 (170)
T cd05151          39 RENEAENSKLAAEAG--IGPKLYYFDP----E--TGVLITEFIEGSELLTE----D---F---SDPENLEKIAKLLKKLH  100 (170)
T ss_pred             HHHHHHHHHHHHHhC--CCCceEEEeC----C--CCeEEEEecCCCccccc----c---c---cCHHHHHHHHHHHHHHh
Confidence            467899999986443  3455555432    1  247999999 7666432    0   1   11235678999999999


Q ss_pred             hhCC-----ccccCCCCCceeeecCCcceeEEeeccccccc
Q psy320           85 TKHN-----LVHTSIKPESIFFKADHVYIMTLINIQQATTH  120 (202)
Q Consensus        85 ~~~~-----ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~  120 (202)
                      +. +     ++|+|++|.||+++ ++.  ++++||+.+...
T Consensus       101 ~~-~~~~~~~~HgD~~~~Nil~~-~~~--~~liDf~~a~~~  137 (170)
T cd05151         101 SS-PLPDLVPCHNDLLPGNFLLD-DGR--LWLIDWEYAGMN  137 (170)
T ss_pred             CC-CCCCceeecCCCCcCcEEEE-CCe--EEEEecccccCC
Confidence            95 7     49999999999998 444  899999998653

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>PRK09902 hypothetical protein; Provisional

Probab=98.92  E-value=3.8e-08  Score=72.32  Aligned_cols=114  Identities=12%  Similarity=0.162  Sum_probs=87.0

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEE-ecCCceEEEEEEcccc--ccHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQV-TGINGTHVCTVTEIMA--ECLCNYMIRQKFQPAPLVVAKIIVNQILEGL   80 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~-~~~~~~~~~lv~e~~~--~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l   80 (202)
                      ..+.+|...|+++.+..- .+++.. ++.. ..+....-+||+|-++  .||.+++....-.+.+......+..+++..+
T Consensus        64 ptf~rE~~~L~~L~~~Gv-PVP~pv-f~~~~k~~~~~rA~LVTe~L~g~~~L~~~l~~~~~~~~~~~~k~~il~~va~~i  141 (216)
T PRK09902         64 PTIVREVAVIKELERAGV-IVPKIV-FGEAVKIEGEWRALLVTEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAF  141 (216)
T ss_pred             hHHHHHHHHHHHHHHcCC-CCCccc-eeeeeccCCceEEEEEEEeCCCCccHHHHHhcCCcCCcchHHHHHHHHHHHHHH
Confidence            457789999999976632 355555 3332 2223457789999884  8999988664433467777789999999999


Q ss_pred             HHHHhhCCccccCCCCCceeeecCCcceeEEeeccccccc
Q psy320           81 NHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTH  120 (202)
Q Consensus        81 ~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~  120 (202)
                      .-||+. |+.|+|+-+.||+++.++...+.++||.-++..
T Consensus       142 a~LH~~-Gv~Hgdly~khIll~~~g~~~v~lIDlEk~r~~  180 (216)
T PRK09902        142 KKMHSV-NRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRRR  180 (216)
T ss_pred             HHHHHC-CCcCCCCCHhheeecCCCCeeEEEEEhhccchh
Confidence            999995 999999999999998666556999999887654

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=98.85  E-value=8e-09  Score=86.19  Aligned_cols=74  Identities=12%  Similarity=0.138  Sum_probs=52.1

Q ss_pred             EEEEEEccc-cccHHHHHH--HcCC--CCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCC--cceeEEe
Q psy320           40 HVCTVTEIM-AECLCNYMI--RQKF--QPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADH--VYIMTLI  112 (202)
Q Consensus        40 ~~~lv~e~~-~~sL~~~~~--~~~~--~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~--~~~~~l~  112 (202)
                      ..++||||+ |+++.++..  ..+.  +.+.+..+..++.|++       . .|++|+|++|.||+++.++  ..+++++
T Consensus       235 ~~VLvmE~i~G~~l~d~~~l~~~g~d~~~la~~~v~~~~~Qif-------~-~GffHaDpHPGNIlv~~~g~~~~~i~ll  306 (537)
T PRK04750        235 ETVMVMERMYGIPVSDVAALRAAGTDMKLLAERGVEVFFTQVF-------R-DGFFHADMHPGNIFVSYDPPENPRYIAL  306 (537)
T ss_pred             CceEEEeeecCccHHhHHHHHhcCCCHHHHHHHHHHHHHHHHH-------h-CCeeeCCCChHHeEEecCCCCCCeEEEE
Confidence            678999999 889877532  2210  0233444445555544       4 4999999999999999876  1249999


Q ss_pred             ecccccccc
Q psy320          113 NIQQATTHQ  121 (202)
Q Consensus       113 Dfg~a~~~~  121 (202)
                      |||.+....
T Consensus       307 DFGivg~l~  315 (537)
T PRK04750        307 DFGIVGSLN  315 (537)
T ss_pred             ecceEEECC
Confidence            999988764

>KOG0601|consensus

Probab=98.84  E-value=2.7e-09  Score=87.57  Aligned_cols=142  Identities=18%  Similarity=0.160  Sum_probs=110.4

Q ss_pred             HHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHH----HHHHH
Q psy320            8 NLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILE----GLNHL   83 (202)
Q Consensus         8 ~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~----~l~~l   83 (202)
                      +|.....++..  |++.++.+..+.    +++..++-+|.++.+|.++...-. .-++...++..+.+...    |+.++
T Consensus       166 ~~~~s~~~i~~--~~~~v~~~~~~e----~~~~lfiqtE~~~~sl~~~~~~~~-~~~p~~~l~~~~~~~~~~~~~al~~~  238 (524)
T KOG0601|consen  166 REFLSHHKIDS--HENPVRDSPAWE----GSGILFIQTELCGESLQSYCHTPC-NFLPDNLLWNSLRDWLSRDVTALSHL  238 (524)
T ss_pred             chhhcccccCc--cccccccCcccc----cCCcceeeeccccchhHHhhhccc-ccCCchhhhhHHhhhhhccccccccc
Confidence            34443344433  559999888888    677999999999999988876433 44888999999999999    99999


Q ss_pred             HhhCCccccCCCCCceeeecC-CcceeEEeecccccccccccCCC------CCCCCccchhhHHHHhhhhccCCCCCCCc
Q psy320           84 HTKHNLVHTSIKPESIFFKAD-HVYIMTLINIQQATTHQECHDQQ------SSSKTKSKIFCEILEQCRLNQDFRLDPRV  156 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~-~~~~~~l~Dfg~a~~~~~~~~~~------~~~~~~~~~ape~~~~~~~~~~~~~~~~~  156 (202)
                      |.. +++|.|+||+||+...+ ..  .+++|||....+.......      ...+...|++||+....       ++...
T Consensus       239 hs~-~~~~~~~kp~~i~~~~~~~s--~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l-------~~~~~  308 (524)
T KOG0601|consen  239 HSN-NIVHDDLKPANIFTTSDWTS--CKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGL-------ATFAS  308 (524)
T ss_pred             CCC-cccccccchhheecccccce--eecCCcceeEEccCCccccceeeeecCCCCceEeChhhhccc-------cchHh
Confidence            995 99999999999999988 55  8999999988775533221      22567789999999832       46689


Q ss_pred             chhhHHHHHH
Q psy320          157 DPTSIKMYTT  166 (202)
Q Consensus       157 Diwsl~~~~~  166 (202)
                      |+++++...+
T Consensus       309 di~sl~ev~l  318 (524)
T KOG0601|consen  309 DIFSLGEVIL  318 (524)
T ss_pred             hhcchhhhhH
Confidence            9999976443

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=98.53  E-value=3.3e-07  Score=69.39  Aligned_cols=99  Identities=18%  Similarity=0.166  Sum_probs=73.7

Q ss_pred             chHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Q psy320            3 TNYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLN   81 (202)
Q Consensus         3 ~~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~   81 (202)
                      +..+.+|.+.|++|... .-.|++-+++-        ...+|||+. |..|....       +.......++..|+.-+.
T Consensus       153 Rl~A~rEf~~L~~L~~~-G~~VP~P~~~n--------RHaVvMe~ieG~eL~~~r-------~~~en~~~il~~il~~~~  216 (304)
T COG0478         153 RLAAEREFEALQRLYPE-GVKVPKPIAWN--------RHAVVMEYIEGVELYRLR-------LDVENPDEILDKILEEVR  216 (304)
T ss_pred             HHHHHHHHHHHHHhhhc-CCCCCCccccc--------cceeeeehcccceeeccc-------CcccCHHHHHHHHHHHHH
Confidence            56788999999999654 12455555543        567999999 65554332       234556667777777777


Q ss_pred             HHHhhCCccccCCCCCceeeecCCcceeEEeeccccccc
Q psy320           82 HLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTH  120 (202)
Q Consensus        82 ~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~  120 (202)
                      .+-. +|+||+|+++=||+++.++.  +.++||=++...
T Consensus       217 ~~~~-~GiVHGDlSefNIlV~~dg~--~~vIDwPQ~v~~  252 (304)
T COG0478         217 KAYR-RGIVHGDLSEFNILVTEDGD--IVVIDWPQAVPI  252 (304)
T ss_pred             HHHH-cCccccCCchheEEEecCCC--EEEEeCcccccC
Confidence            7777 59999999999999999887  999999887664

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=98.48  E-value=5.4e-07  Score=66.98  Aligned_cols=111  Identities=15%  Similarity=0.195  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|++.++.+++. +..+.+++.+....+ .....++||||+ |.++.+....   ..+++.....++.+++.++..|
T Consensus        41 ~~~~E~~~~~~l~~~-~~~vp~~~~~~~~~~-~~~~~~~v~e~i~G~~l~~~~~~---~~~~~~~~~~i~~~i~~~l~~l  115 (223)
T cd05154          41 DVAREYRVLRALAGT-GVPVPKVLALCEDPS-VLGTPFYVMERVDGRVLRDRLLR---PELSPEERRALARALADTLAAL  115 (223)
T ss_pred             cHHHHHHHHHHhhCC-CCCCCCEEEECCCCC-ccCCceEEEEEeCCEecCCCCCC---CCCCHHHHHHHHHHHHHHHHHH
Confidence            456789999999653 335666666655211 113568999999 7766554321   1245555555555666655555


Q ss_pred             Hh-------------------------------------------------------hCCccccCCCCCceeeecCCcce
Q psy320           84 HT-------------------------------------------------------KHNLVHTSIKPESIFFKADHVYI  108 (202)
Q Consensus        84 h~-------------------------------------------------------~~~ivH~dl~p~nil~~~~~~~~  108 (202)
                      |+                                                       ...++|+|+.|.||+++.+....
T Consensus       116 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~  195 (223)
T cd05154         116 HSVDPAAVGLGDLGRPGGYLERQVARWRRQYDASRTDEPPAMERLLRWLEAHLPADSRPGLVHGDYRLGNVLFHPDEPRV  195 (223)
T ss_pred             hCCChhhcCCcccCCCCchHHHHHHHHHHHHHhhcccccHHHHHHHHHHHhhCCCCCCcEEEECCCCcccEEEcCCCCcE
Confidence            52                                                       12468999999999998731223


Q ss_pred             eEEeeccccccc
Q psy320          109 MTLINIQQATTH  120 (202)
Q Consensus       109 ~~l~Dfg~a~~~  120 (202)
                      +.++||+.+...
T Consensus       196 ~~iID~e~~~~g  207 (223)
T cd05154         196 VAVLDWELATLG  207 (223)
T ss_pred             EEEEeccccccC
Confidence            799999987653

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>KOG3741|consensus

Probab=98.46  E-value=1.3e-06  Score=71.41  Aligned_cols=108  Identities=13%  Similarity=0.174  Sum_probs=85.2

Q ss_pred             HHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc--cccHHHHHHHcC-------------CCCCCHHHHHHHH
Q psy320            9 LIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM--AECLCNYMIRQK-------------FQPAPLVVAKIIV   73 (202)
Q Consensus         9 e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~--~~sL~~~~~~~~-------------~~~~~~~~~~~~~   73 (202)
                      -++.++++ .  |.|||++.++|....=....+++|++|+  .++|.++.-...             +.+.++...+.++
T Consensus       323 lve~wkkl-~--h~NvV~frevf~t~tF~D~SlvlvYDYyP~s~TL~d~~F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~  399 (655)
T KOG3741|consen  323 LVEAWKKL-C--HTNVVPFREVFLTYTFGDLSLVLVYDYYPSSPTLYDLYFANPPFTKRTNSFYPSQNLKAPEEVLWSYI  399 (655)
T ss_pred             HHHHHHHh-c--cCceeehhhhhhhhccCcceEEEEEecCCCCchHHHHHccCCccccccccccccCCCCchHHHHHHHH
Confidence            36667777 3  4499999999984433456999999999  678877653211             2458889999999


Q ss_pred             HHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeeccccccccc
Q psy320           74 NQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQE  122 (202)
Q Consensus        74 ~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~  122 (202)
                      .|+..||.++|+. |+.-+-|.|.+|++..+.+  +++...|+......
T Consensus       400 ~QLtaaL~sIHss-GLAck~L~~~kIlv~G~~R--IriS~C~i~Dvl~~  445 (655)
T KOG3741|consen  400 SQLTAALYSIHSS-GLACKTLDLKKILVTGKMR--IRISGCGIMDVLQE  445 (655)
T ss_pred             HHHHHHHHHHHhc-CceeecccHhHeEeeCcce--EEEecccceeeecC
Confidence            9999999999995 9999999999999987654  88888777665543

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=98.41  E-value=1.2e-06  Score=65.64  Aligned_cols=104  Identities=19%  Similarity=0.189  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ...+|.+-|+++..- +-.+++-+.+.        .-.||||++|.. ..--.+...-......+..+..+++..+.-|-
T Consensus       114 W~~kEf~NL~R~~eA-GVrvP~Pi~~~--------~nVLvMEfIg~~-g~pAP~LkDv~~e~~e~~~~~~~~v~~~~~l~  183 (268)
T COG1718         114 WARKEFRNLKRAYEA-GVRVPEPIAFR--------NNVLVMEFIGDD-GLPAPRLKDVPLELEEAEGLYEDVVEYMRRLY  183 (268)
T ss_pred             HHHHHHHHHHHHHHc-CCCCCCceeec--------CCeEEEEeccCC-CCCCCCcccCCcCchhHHHHHHHHHHHHHHHH
Confidence            345677777777432 23444444444        456999999543 10000000011333467788889999999888


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccc
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQ  121 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~  121 (202)
                      ..+++||+||+.-|||+. ++.  +.++|+|+|....
T Consensus       184 ~~a~LVHgDLSEyNiL~~-~~~--p~iID~~QaV~~~  217 (268)
T COG1718         184 KEAGLVHGDLSEYNILVH-DGE--PYIIDVSQAVTID  217 (268)
T ss_pred             HhcCcccccchhhheEEE-CCe--EEEEECccccccC
Confidence            878999999999999999 444  8999999998764

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=98.39  E-value=3.3e-06  Score=62.53  Aligned_cols=67  Identities=16%  Similarity=0.272  Sum_probs=50.6

Q ss_pred             eEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccc
Q psy320           39 THVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQA  117 (202)
Q Consensus        39 ~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a  117 (202)
                      ...+++|||+ |..|.++..      +++    ..+..+..++.-+|+ .|+.|+|..|.|+++..++   ++++|++..
T Consensus       116 ~~~~ll~EYIeG~~l~d~~~------i~e----~~~~ki~~~ikqlH~-~G~~HGD~hpgNFlv~~~~---i~iID~~~k  181 (229)
T PF06176_consen  116 SSYVLLMEYIEGVELNDIED------IDE----DLAEKIVEAIKQLHK-HGFYHGDPHPGNFLVSNNG---IRIIDTQGK  181 (229)
T ss_pred             eEEEEEEEEecCeecccchh------cCH----HHHHHHHHHHHHHHH-cCCccCCCCcCcEEEECCc---EEEEECccc
Confidence            4667999999 877765431      232    244567778999999 5999999999999998544   899999765


Q ss_pred             cc
Q psy320          118 TT  119 (202)
Q Consensus       118 ~~  119 (202)
                      +.
T Consensus       182 ~~  183 (229)
T PF06176_consen  182 RM  183 (229)
T ss_pred             cc
Confidence            43

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>KOG0601|consensus

Probab=98.33  E-value=3.1e-07  Score=75.71  Aligned_cols=141  Identities=16%  Similarity=0.091  Sum_probs=96.3

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      .+...|+..+..+..|.  +++.+...|.    .-+..|+-.||+ ++++...+...  ..+.+...+....|++.++.+
T Consensus       310 i~sl~ev~l~~~l~~~~--~~~g~~~~W~----~~r~~~ip~e~~~~~s~~l~~~~~--~~~d~~~~~~~~~q~~~~l~~  381 (524)
T KOG0601|consen  310 IFSLGEVILEAILGSHL--PSVGKNSSWS----QLRQGYIPLEFCEGGSSSLRSVTS--QMLDEDPRLRLTAQILTALNV  381 (524)
T ss_pred             hcchhhhhHhhHhhccc--ccCCCCCCcc----ccccccCchhhhcCcchhhhhHHH--HhcCcchhhhhHHHHHhcccc
Confidence            34456777777775555  8888777776    344667888999 76665554322  238888899999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccch--hhHHHHhhhhccCCCCCCCcchhh
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKI--FCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~--ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      +|++ .++|+|++|+||++..++ ...++.|||.+..+..  ..........+.  ++....      ...+..+.|++|
T Consensus       382 i~s~-~~~~~d~~psni~i~~~~-~~~~~~~~~~~t~~~~--~~~~~~~~~r~~p~~~~~~e------~~~~~~~~~~~s  451 (524)
T KOG0601|consen  382 IHSK-LFVHLDVKPSNILISNDG-FFSKLGDFGCWTRLAF--SSGVFHHIDRLYPIAEILLE------DYPHLSKADIFS  451 (524)
T ss_pred             ccch-hhhcccccccceeeccch-hhhhccccccccccce--ecccccccccccccchhhcc------cccccccccccc
Confidence            9996 999999999999998764 3479999999875321  111112222222  333333      233556888888


Q ss_pred             HH
Q psy320          161 IK  162 (202)
Q Consensus       161 l~  162 (202)
                      ++
T Consensus       452 l~  453 (524)
T KOG0601|consen  452 LG  453 (524)
T ss_pred             cc
Confidence            86

>KOG0606|consensus

Probab=98.26  E-value=5.6e-07  Score=78.79  Aligned_cols=127  Identities=16%  Similarity=0.109  Sum_probs=94.5

Q ss_pred             ccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCcee
Q psy320           22 DKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIF  100 (202)
Q Consensus        22 ~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil  100 (202)
                      |.++...-.|.    ...-.++|++|+ +++|...++..+  ..+..-++.+...++.+.++||.. .+.|+|++|.|++
T Consensus       864 P~v~~~~~s~~----~rsP~~L~~~~~~~~~~~Skl~~~~--~~saepaRs~i~~~vqs~e~L~s~-~r~h~~~~p~~~l  936 (1205)
T KOG0606|consen  864 PAVVRSFPSFP----CRSPLPLVGHYLNGGDLPSKLHNSG--CLSAEPARSPILERVQSLESLHSS-LRKHRDLKPDSLL  936 (1205)
T ss_pred             CceecccCCCC----CCCCcchhhHHhccCCchhhhhcCC--CcccccccchhHHHHhhhhccccc-hhhcccccccchh
Confidence            45554433333    456788999999 899999888775  367777888888899999999995 7999999999999


Q ss_pred             eecCCcceeEEeecccccccccc-------c-----C--------------------CCCCCCCccchhhHHHHhhhhcc
Q psy320          101 FKADHVYIMTLINIQQATTHQEC-------H-----D--------------------QQSSSKTKSKIFCEILEQCRLNQ  148 (202)
Q Consensus       101 ~~~~~~~~~~l~Dfg~a~~~~~~-------~-----~--------------------~~~~~~~~~~~ape~~~~~~~~~  148 (202)
                      ...++.  .+++||+........       +     .                    .....+|+.|.+||.+.+..   
T Consensus       937 ~~~~gh--~~l~~~~t~~~vg~~~p~~~~sg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~t~~~laPe~~lg~~--- 1011 (1205)
T KOG0606|consen  937 IAYDGH--RPLTDFGTLSKVGLIPPTTDLSGPSSSGTPRRLSRSERRPQLSADEARRKHAVVGTPDYLAPEILLGRR--- 1011 (1205)
T ss_pred             hcccCC--cccCccccccccccccCcCCcccccccCccccccccccccccccchhhccccccCCCcccCCccccccc---
Confidence            998887  888998743321110       0     0                    01226888999999999544   


Q ss_pred             CCCCCCCcchhhHHH
Q psy320          149 DFRLDPRVDPTSIKM  163 (202)
Q Consensus       149 ~~~~~~~~Diwsl~~  163 (202)
                         ....+|+|+.|.
T Consensus      1012 ---hgs~ad~~~~g~ 1023 (1205)
T KOG0606|consen 1012 ---HGSAADWWSSGV 1023 (1205)
T ss_pred             ---CCCcchhhhhhh
Confidence               566899999965

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=98.00  E-value=2.5e-05  Score=56.97  Aligned_cols=102  Identities=21%  Similarity=0.186  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHH---HHHcCCCCCCHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNY---MIRQKFQPAPLVVAKIIVNQILEGLN   81 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~---~~~~~~~~~~~~~~~~~~~qi~~~l~   81 (202)
                      ..+|.-+++.+...+  ++++++|+|-        ..+|+||. .+++...   +...  -..++.....++.+++..+.
T Consensus         6 ~~~E~lll~~l~~~~--~~pk~lG~CG--------~~~v~E~~~~~~~~~~~~~l~~~--~~~~w~~R~~iA~~lL~~l~   73 (188)
T PF12260_consen    6 QNNEPLLLQLLQGSE--PFPKLLGSCG--------RFYVVEYVGAGSLYGIYRPLSQF--LQSPWEQRAKIALQLLELLE   73 (188)
T ss_pred             hccHHHHHHHcCCCC--CCCCeeeECC--------CEEEEEeecCccccccccccccc--cccCHHHHHHHHHHHHHHHH
Confidence            456888889996655  9999999995        35688998 4555321   0011  12678899999999999999


Q ss_pred             HHHhhC--CccccCCCCCceeeecCCcceeEEeecccccccc
Q psy320           82 HLHTKH--NLVHTSIKPESIFFKADHVYIMTLINIQQATTHQ  121 (202)
Q Consensus        82 ~lh~~~--~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~  121 (202)
                      +++...  .+.-.|++++|+.++.+++  +|++|........
T Consensus        74 ~l~~~~~~~~~lcDv~~~nfgv~~~~~--lk~iDld~v~~~~  113 (188)
T PF12260_consen   74 ELDHGPLGFFYLCDVSPDNFGVNDDGR--LKLIDLDDVFVED  113 (188)
T ss_pred             HHhcCCCCcEEEeecchHHeEEeCCCc--EEEEechhcchhH
Confidence            998721  3666799999999998877  9999998876653

Proteins in this uncharacterised family are described as transmembrane proteins.

>KOG2137|consensus

Probab=97.84  E-value=7.6e-06  Score=69.01  Aligned_cols=83  Identities=20%  Similarity=0.243  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC----------CCCCCccchhhHHHH
Q psy320           73 VNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ----------SSSKTKSKIFCEILE  142 (202)
Q Consensus        73 ~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~----------~~~~~~~~~ape~~~  142 (202)
                      +.+++.|+.++|..+++||++|.|++|.++..+.  .|++.|+.+.....+.+..          .......|.|||.+.
T Consensus       105 l~~v~dgl~flh~sAk~VH~ni~p~~i~~na~~~--wkl~Gf~f~v~~~~~~~~p~~~yd~~lp~~~~~~~~f~apE~~~  182 (700)
T KOG2137|consen  105 LGNVADGLAFLHRSAKVVHGNIQPEAIVVNANGD--WKLAGFSFCVNANGPTEYPFSEYDPPLPLLLQPHLNFLAPEYLL  182 (700)
T ss_pred             hhcccchhhhhccCcceeecccchhheeeccCcc--eeeccchhhhccCCCCccccccCCCCCChhhccCcccccchhhc
Confidence            4556789999999889999999999999999887  9999999988765422211          113344689999998


Q ss_pred             hhhhccCCCCCCCcchhhHHH
Q psy320          143 QCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus       143 ~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      ..      ..++++|.+|+|+
T Consensus       183 ~~------~~~~~sd~fSlG~  197 (700)
T KOG2137|consen  183 GT------TNTPASDVFSLGV  197 (700)
T ss_pred             cc------cccccccceeeee
Confidence            43      2566899999975

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=97.84  E-value=6.2e-05  Score=62.92  Aligned_cols=76  Identities=11%  Similarity=0.141  Sum_probs=50.9

Q ss_pred             EEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeeccccc
Q psy320           40 HVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQAT  118 (202)
Q Consensus        40 ~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~  118 (202)
                      ...++|||+ |-.+.+...... .+.+...+.....++.  +..+-. .|+.|.|..|.||++..++.  +.+.|||...
T Consensus       240 ~~VLtmE~i~Gi~i~d~~~l~~-~g~d~k~ia~~~~~~f--~~q~~~-dgffHaDpHpGNi~v~~~g~--i~~lDfGi~g  313 (517)
T COG0661         240 RRVLTMEWIDGIKISDIAALKS-AGIDRKELAELLVRAF--LRQLLR-DGFFHADPHPGNILVRSDGR--IVLLDFGIVG  313 (517)
T ss_pred             CcEEEEEeeCCEecccHHHHHh-cCCCHHHHHHHHHHHH--HHHHHh-cCccccCCCccceEEecCCc--EEEEcCccee
Confidence            678999999 877777743222 2255333222221111  122223 49999999999999999977  9999999987


Q ss_pred             ccc
Q psy320          119 THQ  121 (202)
Q Consensus       119 ~~~  121 (202)
                      ...
T Consensus       314 ~l~  316 (517)
T COG0661         314 RLD  316 (517)
T ss_pred             cCC
Confidence            654

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=97.80  E-value=2.4e-05  Score=67.90  Aligned_cols=80  Identities=10%  Similarity=0.039  Sum_probs=51.1

Q ss_pred             cccCCCCCceeeecCCcceeEEeecccccccccccC---CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHHH
Q psy320           90 VHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD---QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTT  166 (202)
Q Consensus        90 vH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~~  166 (202)
                      -+++..|.+.++..... ..++.|||.++.......   .....||+.|+|||++..      ..++.++|+||+|+..+
T Consensus       499 ~~~~~~p~~~~~~~p~~-~~~~~~~~~~~~~~~g~~~~~~~~~vGT~~Y~APE~l~~------~~~~~~~DiwSlG~il~  571 (669)
T cd05610         499 PTQKPRPHGNLYQTPKQ-VKIGTPYRTPKSVRRGAAPVEGERILGTPDYLAPELLLG------KPHGPAVDWWALGVCLF  571 (669)
T ss_pred             CCCCCCCCCceeECCcc-ccccccCCCchhhhcccccccCCceeeCccccCHHHcCC------CCCCcHHHHHHHHHHHH
Confidence            44566666444433322 378899999877543222   123478999999999973      33788999999986322


Q ss_pred             HHHHHHHHHhcCCCCC
Q psy320          167 FCEILEQCRLNHQDFR  182 (202)
Q Consensus       167 ~~~~~~~~~~~~~~~~  182 (202)
                            .++.|.++|.
T Consensus       572 ------ElltG~~pf~  581 (669)
T cd05610         572 ------EFLTGIPPFN  581 (669)
T ss_pred             ------HHHHCCCCCC
Confidence                  3334666654

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=97.66  E-value=0.00052  Score=55.58  Aligned_cols=135  Identities=10%  Similarity=0.089  Sum_probs=93.1

Q ss_pred             eEEEEEEccc-c-ccHHHHHH----HcCCCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEe
Q psy320           39 THVCTVTEIM-A-ECLCNYMI----RQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLI  112 (202)
Q Consensus        39 ~~~~lv~e~~-~-~sL~~~~~----~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~  112 (202)
                      ...-+.|+.+ + ..+..+..    +........+.+...++.++.+..-||. .|.+=+|+.++|+|++.+..  +.|.
T Consensus        83 ~~iGflmP~v~g~~pI~~~y~p~tRRqs~P~~~w~fllrvaRnlA~aFA~lH~-~Gh~vGDVn~~~~lVsd~~~--V~LV  159 (637)
T COG4248          83 KVIGFLMPKVSGKEPIHMIYSPATRRQSYPHCAWDFLLRVARNLASAFATLHE-HGHVVGDVNQNSFLVSDDSK--VVLV  159 (637)
T ss_pred             ceeEEecccCCCccchhhhcCchhhcccCCccccHHHHHHHHHHHHHHHHHHh-cCCcccccCccceeeecCce--EEEE
Confidence            3477888887 3 33433332    1222346678899999999999999999 59999999999999998876  8888


Q ss_pred             ecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCCCC
Q psy320          113 NIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       113 Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      |-..-....+........+...|..||.-...++. +..-+...|.+.|+++     +|+.+.-|+.+|.
T Consensus       160 dsDsfqi~~ng~~~~cpVg~~eftPPElQ~~~sf~-g~~r~~~hD~FGLavL-----iF~lL~ggrHPys  223 (637)
T COG4248         160 DSDSFQINANGTLHLCPVGVSEFTPPELQTLPSFV-GFERTANHDNFGLAVL-----IFHLLFGGRHPYS  223 (637)
T ss_pred             cccceeeccCCceEecccCccccCCHHHhcccccc-ccCCCccccchhHHHH-----HHHHHhcCCCCCC
Confidence            86554433222222234677889999987744322 2233567899998753     6677776677775

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=97.63  E-value=0.0017  Score=47.82  Aligned_cols=97  Identities=11%  Similarity=0.159  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHh-cC--CCccceeeeeeeEEecCCceEEEEEEccc-------cccHHHHHHHcCCCCCCHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQ-KH--PSDKLMKLLDHFQVTGINGTHVCTVTEIM-------AECLCNYMIRQKFQPAPLVVAKIIVN   74 (202)
Q Consensus         5 ~~~~e~~~l~~l~-~~--~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-------~~sL~~~~~~~~~~~~~~~~~~~~~~   74 (202)
                      ...+|+.....++ ..  .+.+|.+++|+.+    +..-.-+|+|.+       ..+|.+++....   ++. .....  
T Consensus        57 ~~~~E~~~y~~l~~~~~~~~~~i~r~~G~ve----T~~G~Glv~e~I~d~dG~~s~TL~~~l~~~~---~~~-~~~~~--  126 (199)
T PF10707_consen   57 QNRRELRYYKQLSLRRGVDWSHIPRFYGFVE----TNLGLGLVVELIRDADGNISPTLEDYLKEGG---LTE-ELRQA--  126 (199)
T ss_pred             HHHHHHHHHHHHhhccCCcccccccEeEEEe----cCCceEEEEEEEECCCCCcCccHHHHHHcCC---ccH-HHHHH--
Confidence            3455666666665 22  2568999999998    455566777776       357888885532   555 33332  


Q ss_pred             HHHHHHHHHHhhCCccccCCCCCceeeecCCcc--eeEEee
Q psy320           75 QILEGLNHLHTKHNLVHTSIKPESIFFKADHVY--IMTLIN  113 (202)
Q Consensus        75 qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~--~~~l~D  113 (202)
                       +-.-..||-+. +|+.+|++|.||++......  .+.++|
T Consensus       127 -L~~f~~~l~~~-~Iv~~dl~~~NIv~~~~~~~~~~lvlID  165 (199)
T PF10707_consen  127 -LDEFKRYLLDH-HIVIRDLNPHNIVVQRRDSGEFRLVLID  165 (199)
T ss_pred             -HHHHHHHHHHc-CCeecCCCcccEEEEecCCCceEEEEEe
Confidence             33344577774 99999999999999876532  477777

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=97.62  E-value=0.0006  Score=51.66  Aligned_cols=31  Identities=10%  Similarity=0.132  Sum_probs=26.2

Q ss_pred             CccccCCCCCceeeecCCcceeEEeeccccccc
Q psy320           88 NLVHTSIKPESIFFKADHVYIMTLINIQQATTH  120 (202)
Q Consensus        88 ~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~  120 (202)
                      .++|+|+.|.||+++.++.  ..|+||+.+...
T Consensus       164 ~l~HgD~~~~Nil~~~~~~--~~iIDwe~a~~g  194 (244)
T cd05150         164 VVTHGDACLPNIIVDPGKF--SGFIDLGRLGVA  194 (244)
T ss_pred             EEECCCCCCccEEEeCCcE--EEEEEccccccc
Confidence            5899999999999987654  789999988654

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>KOG1235|consensus

Probab=97.40  E-value=0.0011  Score=55.67  Aligned_cols=77  Identities=8%  Similarity=0.039  Sum_probs=49.4

Q ss_pred             eEEEEEEccc-cccHHHH--HHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecC--CcceeEEee
Q psy320           39 THVCTVTEIM-AECLCNY--MIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKAD--HVYIMTLIN  113 (202)
Q Consensus        39 ~~~~lv~e~~-~~sL~~~--~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~--~~~~~~l~D  113 (202)
                      ...+|+|||+ |..+.++  +.+.   +++...+..-+.+...-  -+-. .|++|.|-.|.||++..+  +..++.+.|
T Consensus       275 t~RVLtME~~~G~~i~Dl~~i~~~---gi~~~~i~~~l~~~~~~--qIf~-~GffHaDPHPGNilv~~~~~~~~~ivllD  348 (538)
T KOG1235|consen  275 TKRVLTMEYVDGIKINDLDAIDKR---GISPHDILNKLVEAYLE--QIFK-TGFFHADPHPGNILVRPNPEGDEEIVLLD  348 (538)
T ss_pred             cceEEEEEecCCccCCCHHHHHHc---CCCHHHHHHHHHHHHHH--HHHh-cCCccCCCCCCcEEEecCCCCCccEEEEc
Confidence            3788999999 6544333  3333   36665443333222211  1123 399999999999999964  344699999


Q ss_pred             cccccccc
Q psy320          114 IQQATTHQ  121 (202)
Q Consensus       114 fg~a~~~~  121 (202)
                      ||+.....
T Consensus       349 hGl~~~is  356 (538)
T KOG1235|consen  349 HGLYAVIS  356 (538)
T ss_pred             cccccccc
Confidence            99987653

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=97.36  E-value=0.0033  Score=47.25  Aligned_cols=29  Identities=7%  Similarity=0.093  Sum_probs=24.7

Q ss_pred             CccccCCCCCceeeecCCcceeEEeecccccc
Q psy320           88 NLVHTSIKPESIFFKADHVYIMTLINIQQATT  119 (202)
Q Consensus        88 ~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~  119 (202)
                      .++|+|+.|.||+++.++   +.++||+.+..
T Consensus       154 ~~~HgD~~~~Nii~~~~~---~~iIDwe~a~~  182 (226)
T TIGR02172       154 TCLHGDFQIGNLITSGKG---TYWIDLGDFGY  182 (226)
T ss_pred             ceEecCCCCCcEEEcCCC---cEEEechhcCc
Confidence            478999999999998654   88999988754

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>PLN02876 acyl-CoA dehydrogenase

Probab=97.31  E-value=0.0012  Score=58.78  Aligned_cols=33  Identities=12%  Similarity=0.352  Sum_probs=26.0

Q ss_pred             CccccCCCCCceeeecCCcceeEEeeccccccc
Q psy320           88 NLVHTSIKPESIFFKADHVYIMTLINIQQATTH  120 (202)
Q Consensus        88 ~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~  120 (202)
                      .++|+|+++.|++++.++....-+.||+.+..-
T Consensus       226 ~LvHGD~~~~Nvl~~~~~~~v~aVLDWE~a~~G  258 (822)
T PLN02876        226 GIVHGDFRIDNLVFHPTEDRVIGILDWELSTLG  258 (822)
T ss_pred             ceEecCcccccEEEcCCCCeEEEEEeeeccccC
Confidence            499999999999998643323579999987753

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=97.14  E-value=0.0025  Score=48.02  Aligned_cols=31  Identities=10%  Similarity=0.253  Sum_probs=25.3

Q ss_pred             CccccCCCCCceeeecCCcceeEEeeccccccc
Q psy320           88 NLVHTSIKPESIFFKADHVYIMTLINIQQATTH  120 (202)
Q Consensus        88 ~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~  120 (202)
                      +++|+|+.+.|++++.+.  ...++||+.+...
T Consensus       165 ~l~HGD~~~~Nvlv~~~~--i~giIDw~~a~~g  195 (235)
T cd05155         165 VWFHGDLAPGNLLVQDGR--LSAVIDFGCLGVG  195 (235)
T ss_pred             eEEeCCCCCCcEEEECCC--EEEEEeCcccCcC
Confidence            589999999999998543  2579999987654

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>COG5072 ALK1 Serine/threonine kinase of the haspin family [Cell division and chromosome partitioning]

Probab=97.13  E-value=0.0017  Score=51.82  Aligned_cols=89  Identities=11%  Similarity=-0.015  Sum_probs=67.0

Q ss_pred             ceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeec
Q psy320           24 LMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKA  103 (202)
Q Consensus        24 Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~  103 (202)
                      ++.+...|.....++.+.|++|++-|+++.....      -..+++..++.+.+..+.-+..+..+-||++.-.||+++ 
T Consensus       284 ~~~~e~~~vv~~de~~y~yl~~kdhgt~is~ik~------~~~~e~lsff~s~~sil~~lekkf~fehrnlt~~niLId-  356 (488)
T COG5072         284 SVFLETLKVVSLDETLYLYLHFKDHGTPISIIKA------DRSEEELSFFWSCISILDILEKKFPFEHRNLTLDNILID-  356 (488)
T ss_pred             chhhhcceEEecCCceEEEEEEecCCceeeeeec------ccHHHHHHHHHHHHHHHhhhhhcCCcccccccccceeee-
Confidence            3444444444333677999999999888753221      345778888888888888888777899999999999999 


Q ss_pred             CCcceeEEeecccccccc
Q psy320          104 DHVYIMTLINIQQATTHQ  121 (202)
Q Consensus       104 ~~~~~~~l~Dfg~a~~~~  121 (202)
                      .|+  +.|+||.+++.-.
T Consensus       357 ~Gn--vtLIDfklsRl~~  372 (488)
T COG5072         357 EGN--VTLIDFKLSRLSY  372 (488)
T ss_pred             cCc--eEEEEeeeeeccc
Confidence            666  9999999998643

>KOG2270|consensus

Probab=97.12  E-value=0.0018  Score=51.87  Aligned_cols=103  Identities=14%  Similarity=0.224  Sum_probs=70.1

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccc-cHH-HHHHHcCCCCCCHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAE-CLC-NYMIRQKFQPAPLVVAKIIVNQILEGLN   81 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~-sL~-~~~~~~~~~~~~~~~~~~~~~qi~~~l~   81 (202)
                      -.+..|++-|.++..-   .|+ .-.-..     =+..+|||+++|. ... -.++.   -.++...+..+-.|++.-|.
T Consensus       211 ~WAEKE~RNLkRl~~a---GIP-~PePIl-----Lk~hVLVM~FlGrdgw~aPkLKd---~~ls~~ka~~~Y~~~v~~MR  278 (520)
T KOG2270|consen  211 TWAEKEMRNLKRLNNA---GIP-CPEPIL-----LKNHVLVMEFLGRDGWAAPKLKD---ASLSTSKARELYQQCVRIMR  278 (520)
T ss_pred             HHHHHHHHHHHHHHhc---CCC-CCCcee-----eecceEeeeeccCCCCcCccccc---ccCChHHHHHHHHHHHHHHH
Confidence            3566788888887422   111 111111     1245799999942 221 11111   22777788888899999999


Q ss_pred             HHHhhCCccccCCCCCceeeecCCcceeEEeecccccccc
Q psy320           82 HLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQ  121 (202)
Q Consensus        82 ~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~  121 (202)
                      -|.++|++||.||+-=|+|+..+.   +.++|.+++.-..
T Consensus       279 ~lY~~c~LVHADLSEfN~LyhdG~---lyiIDVSQSVE~D  315 (520)
T KOG2270|consen  279 RLYQKCRLVHADLSEFNLLYHDGK---LYIIDVSQSVEHD  315 (520)
T ss_pred             HHHHHhceeccchhhhhheEECCE---EEEEEccccccCC
Confidence            999889999999999999997543   8999999988654

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=96.98  E-value=0.012  Score=43.68  Aligned_cols=31  Identities=23%  Similarity=0.440  Sum_probs=20.7

Q ss_pred             CccccCCCCCceeee-cCCcceeEEeeccccccc
Q psy320           88 NLVHTSIKPESIFFK-ADHVYIMTLINIQQATTH  120 (202)
Q Consensus        88 ~ivH~dl~p~nil~~-~~~~~~~~l~Dfg~a~~~  120 (202)
                      .++|+|+.|.||+++ .++.  +.++||+.+...
T Consensus       167 ~~~HgD~~~~Nil~~~~~~~--i~iID~e~a~~~  198 (239)
T PF01636_consen  167 VLIHGDLHPGNILVDPSDGR--IGIIDFEDAGWG  198 (239)
T ss_dssp             EEE-SS-SGGGEEEESSTTE--EEE--GTT-EEE
T ss_pred             EEEEeccccccceeeeccce--eEEEecccceEC
Confidence            599999999999999 4443  589999887654

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>KOG0576|consensus

Probab=96.97  E-value=0.00028  Score=59.68  Aligned_cols=132  Identities=14%  Similarity=0.183  Sum_probs=88.5

Q ss_pred             HHHHHHHHhcCCCcc-ceeeeeeeEEecCCceEEEEEEccc-cc-cHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            9 LIKTLIEIQKHPSDK-LMKLLDHFQVTGINGTHVCTVTEIM-AE-CLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         9 e~~~l~~l~~~~h~~-Iv~l~~~~~~~~~~~~~~~lv~e~~-~~-sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      +++.|.++ ++|  | .+..++-+.    .+...+++++++ ++ +-...+.... ..+...+.....+.-+.+++++|+
T Consensus       283 ~~eLLdK~-n~P--~~~v~~~~d~~----~E~~~~i~~~i~s~~rs~~~~~~~se-~~~~~~~~~~~~r~et~~l~~l~~  354 (829)
T KOG0576|consen  283 AIELLDKV-NNP--NPVVRYLEDYD----GEDYLWIPMRICSTGRSSALEMTVSE-IALEQYQFAYPLRKETRPLAELHS  354 (829)
T ss_pred             HHHHHHHc-cCC--CCcccccccCC----cccccchhhhhhcCCccccccCChhh-Hhhhhhhhhhhhhhhccccccccc
Confidence            56777777 566  6 555555555    467899999999 33 2111110000 113334444555666778889998


Q ss_pred             hCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           86 KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      . .=+|+|    ||+.....   .+..||++....+.........+++.+++||+.....      ++...|.|+++
T Consensus       355 ~-~~~~~d----~~l~s~~~---~~~~~~~v~~~L~~~~~~~t~~~~~~~~~pev~~~~~------~~~~p~~~~~~  417 (829)
T KOG0576|consen  355 S-YKVHRD----NILGSEEE---VKLLDFAVPPQLTRTMKPRTAIGTPEPLAPEVIQENT------IDGCPDSGSLA  417 (829)
T ss_pred             c-cccCcc----cccccccc---cccccccCCcccCcccccccCCCCCCCCCchhhcccc------cccCCCccCCC
Confidence            4 568888    77765532   7999999988876555566778999999999888433      66788999985

>KOG2268|consensus

Probab=96.72  E-value=0.0027  Score=50.09  Aligned_cols=99  Identities=18%  Similarity=0.233  Sum_probs=67.5

Q ss_pred             CchHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Q psy320            2 HTNYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGL   80 (202)
Q Consensus         2 ~~~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l   80 (202)
                      +|-++.+|...++.|.++. --|++..++        ...|+|||.+ +..|.++.+-.     ..+.   +...+..-+
T Consensus       153 SRlaa~kEfafmkaL~e~g-fpVPkpiD~--------~RH~Vvmelv~g~Pl~~v~~v~-----d~~~---ly~~lm~~I  215 (465)
T KOG2268|consen  153 SRLAATKEFAFMKALYERG-FPVPKPIDH--------NRHCVVMELVDGYPLRQVRHVE-----DPPT---LYDDLMGLI  215 (465)
T ss_pred             HHHHHHHHHHHHHHHHHcC-CCCCCcccc--------cceeeHHHhhcccceeeeeecC-----ChHH---HHHHHHHHH
Confidence            4567888999999997764 123333333        3678999999 87776654322     1222   233344444


Q ss_pred             HHHHhhCCccccCCCCCceeeecCCcceeEEeeccccccc
Q psy320           81 NHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTH  120 (202)
Q Consensus        81 ~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~  120 (202)
                      --|-. .|++|+|..-=||++..++.  ++++||=+....
T Consensus       216 v~la~-~GlIHgDFNEFNimv~dd~~--i~vIDFPQmvS~  252 (465)
T KOG2268|consen  216 VRLAN-HGLIHGDFNEFNIMVKDDDK--IVVIDFPQMVST  252 (465)
T ss_pred             HHHHH-cCceecccchheeEEecCCC--EEEeechHhhcc
Confidence            45666 49999999999999998776  999999766543

>PF07387 Seadorna_VP7: Seadornavirus VP7; InterPro: IPR009973 This family consists of several Seadornavirus specific VP7 proteins of around 305 residues in length

Probab=96.06  E-value=0.038  Score=41.47  Aligned_cols=87  Identities=11%  Similarity=0.190  Sum_probs=56.5

Q ss_pred             chHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            3 TNYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         3 ~~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ...+.++.+++.++.     .|+++..-      ++..+-++.|+|..--              .....+...-+.+|..
T Consensus       102 ~~~y~nky~v~Armh-----GilrL~ND------n~~~yGvIlE~Cy~~~--------------i~~~N~i~agi~~L~~  156 (308)
T PF07387_consen  102 DALYFNKYRVFARMH-----GILRLKND------NNYKYGVILERCYKIK--------------INFSNFITAGIKDLMD  156 (308)
T ss_pred             hhhhhhhhhHHHHhh-----heeEeecC------CCceeEEEEeeccCcc--------------cchhHHHHHhHHHHHH
Confidence            344566777777773     67777621      4556668888883110              0011112222566778


Q ss_pred             HHhhC-CccccCCCCCceeeecCCcceeEEeeccc
Q psy320           83 LHTKH-NLVHTSIKPESIFFKADHVYIMTLINIQQ  116 (202)
Q Consensus        83 lh~~~-~ivH~dl~p~nil~~~~~~~~~~l~Dfg~  116 (202)
                      .|+.. +.+|+|..|+||+-++.+.  +||.|-+.
T Consensus       157 fH~~~~~~lHGD~np~NiM~D~~G~--lKlVDP~~  189 (308)
T PF07387_consen  157 FHSENQHCLHGDCNPDNIMCDKFGY--LKLVDPVC  189 (308)
T ss_pred             hhccCCCeecCCCChhheeecCCCC--EEecChhh
Confidence            88532 6899999999999999887  99999654

The function of this family is unknown.

>KOG2269|consensus

Probab=96.00  E-value=0.025  Score=44.85  Aligned_cols=101  Identities=16%  Similarity=0.217  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHhcCC--CccceeeeeeeEEecCCceEEEEEEcccc-ccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHP--SDKLMKLLDHFQVTGINGTHVCTVTEIMA-ECLCNYMIRQKFQPAPLVVAKIIVNQILEGLN   81 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~--h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~-~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~   81 (202)
                      .+.+|+.-|.++++|.  .|-+|.+.           ...|||.++| ..+..-..+.  -+++.+..+..-.|+..++.
T Consensus       331 WAEkEmhNL~RMq~~GlpcP~vV~lk-----------khvLVMsFiGd~~~aAPkLK~--v~l~d~E~~~aY~q~~~~M~  397 (531)
T KOG2269|consen  331 WAEKEMHNLSRMQKHGLPCPQVVKLK-----------KHVLVMSFIGDQGLAAPKLKN--VELTDDERRNAYDQVQSIMC  397 (531)
T ss_pred             HHHHHHHHHHHHHhcCCCCCceeeee-----------cceEEEEeecCCCCCCccccc--cccChHHHHHHHHHHHHHHH
Confidence            4566777777777663  45565552           4568998883 2221111111  23788888888899999999


Q ss_pred             HHHhhCCccccCCCCCceeeecCCcceeEEeecccccccc
Q psy320           82 HLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQ  121 (202)
Q Consensus        82 ~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~  121 (202)
                      -|..+|-+||-|++--|+|+..+ .  +.++|...+....
T Consensus       398 ~lY~Ec~LVHADlSEyN~Lw~~g-K--vw~IDVsQsvep~  434 (531)
T KOG2269|consen  398 RLYKECLLVHADLSEYNLLWTPG-K--VWVIDVSQSVEPS  434 (531)
T ss_pred             HHHHhhheeecchhhhhheecCC-c--eEEEechhccCCC
Confidence            98888999999999999999876 4  8999988876543

>KOG1035|consensus

Probab=95.99  E-value=0.0068  Score=54.87  Aligned_cols=147  Identities=17%  Similarity=0.159  Sum_probs=86.6

Q ss_pred             HHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhCC
Q psy320           10 IKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHN   88 (202)
Q Consensus        10 ~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~~   88 (202)
                      ...+..+ .  |+|++.++.|-.+.-..+-...+..+++ ..++...+...  +..+..+++.+..+.+.|+.++|+. .
T Consensus       233 ~~~l~k~-~--~~n~~~~~~~~le~~~~g~~~~v~~~~~s~~~~~~~~q~v--~~i~~~~~r~~~~~~~~GL~~~h~~-~  306 (1351)
T KOG1035|consen  233 LESLSKI-A--HDNLGGYFVYGLERLFRGIVLDVLQEICSKVELRSLLQSV--GSIPLETLRILHQKLLEGLAYLHSL-S  306 (1351)
T ss_pred             HHHHHhh-c--cccccceeEEeehhhcchHHHHHHHhhcCccchHHHHhhc--cccCHHHHHHHHHHHhhhHHHHHHh-c
Confidence            3444444 2  5599999998764221221222334566 67777776655  4489999999999999999999994 6


Q ss_pred             ccccCCCCC---ceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHH
Q psy320           89 LVHTSIKPE---SIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYT  165 (202)
Q Consensus        89 ivH~dl~p~---nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~  165 (202)
                      ..|.-+...   +--.+.++.....+.||+.++................+.++|......    .......|+|.+|...
T Consensus       307 l~~v~L~~s~~~~~~~~~e~~~~~sl~~~~ss~~l~d~~~~~~~~~~~~~~~~e~~~~~~----~~~~r~~dL~~lgll~  382 (1351)
T KOG1035|consen  307 LEHVVLSASSSKESTVDGEGVVAISLSDFDSSKPLPDNEKSFSDLLAEIRNADEDLKENT----AKKSRLTDLWCLGLLL  382 (1351)
T ss_pred             cceeEEecccccccccCccceeecchhhhcccccCCCcccchhhcCcccccccccccccc----chhhhhhHHHHHHHHH
Confidence            555544333   222222232123344888877765544444444455566777666332    1111246999987643


Q ss_pred             H
Q psy320          166 T  166 (202)
Q Consensus       166 ~  166 (202)
                      .
T Consensus       383 ~  383 (1351)
T KOG1035|consen  383 L  383 (1351)
T ss_pred             h
Confidence            3

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=95.73  E-value=0.13  Score=42.00  Aligned_cols=29  Identities=24%  Similarity=0.374  Sum_probs=24.7

Q ss_pred             CccccCCCCCceeeecCCcceeEEeecccccc
Q psy320           88 NLVHTSIKPESIFFKADHVYIMTLINIQQATT  119 (202)
Q Consensus        88 ~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~  119 (202)
                      .++|+|+.|.|||+..+.   ++++|+..+..
T Consensus       224 ~l~HgDl~~gni~~~~~~---~~viD~E~a~~  252 (401)
T PRK09550        224 ALLHGDLHTGSIFVTEEE---TKVIDPEFAFY  252 (401)
T ss_pred             ceeeccCCcccEEeeCCC---cEEEecccccc
Confidence            689999999999997653   89999987654

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=95.73  E-value=0.017  Score=43.33  Aligned_cols=31  Identities=13%  Similarity=0.318  Sum_probs=26.1

Q ss_pred             CccccCCCCCceeeec-CCcceeEEeeccccccc
Q psy320           88 NLVHTSIKPESIFFKA-DHVYIMTLINIQQATTH  120 (202)
Q Consensus        88 ~ivH~dl~p~nil~~~-~~~~~~~l~Dfg~a~~~  120 (202)
                      +++|+|+.+.||+++. ++.  +.++||..|...
T Consensus       171 ~l~H~Dl~~~Nil~~~~~~~--~~lIDwe~a~~~  202 (235)
T cd05157         171 VFCHNDLLSGNIIYNEEKNS--VKFIDYEYAGYN  202 (235)
T ss_pred             EEEcCCCCcCcEEEeCCCCC--EEEEEcccCCcC
Confidence            6899999999999997 344  999999887653

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes

Probab=95.61  E-value=0.027  Score=44.07  Aligned_cols=31  Identities=16%  Similarity=0.342  Sum_probs=26.5

Q ss_pred             CccccCCCCCceeeecC----CcceeEEeeccccccc
Q psy320           88 NLVHTSIKPESIFFKAD----HVYIMTLINIQQATTH  120 (202)
Q Consensus        88 ~ivH~dl~p~nil~~~~----~~~~~~l~Dfg~a~~~  120 (202)
                      +++|+|+.|.||+++.+    +.  +.++||..|...
T Consensus       180 ~lcH~Dl~~~Nil~~~~~~~~~~--i~lIDwEya~~~  214 (302)
T cd05156         180 VFCHNDLQEGNILLLNPSSETKK--LVLIDFEYASYN  214 (302)
T ss_pred             eEEecCCCcCeEEecCCCCCCCc--EEEEeeCCCCCC
Confidence            68999999999999874    54  899999988754

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer

>TIGR01767 MTRK 5-methylthioribose kinase

Probab=95.54  E-value=0.13  Score=41.39  Aligned_cols=29  Identities=24%  Similarity=0.360  Sum_probs=24.2

Q ss_pred             CccccCCCCCceeeecCCcceeEEeecccccc
Q psy320           88 NLVHTSIKPESIFFKADHVYIMTLINIQQATT  119 (202)
Q Consensus        88 ~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~  119 (202)
                      .++|+|+.+.||+++.++   ++++|+..+..
T Consensus       193 ~llHGDl~~gNi~~~~~~---~~~iD~e~~~~  221 (370)
T TIGR01767       193 TLLHGDLHSGSIFVSEHE---TKVIDPEFAFY  221 (370)
T ss_pred             eeeeccCCcccEEEcCCC---CEEEcCccccc
Confidence            589999999999997654   78999987654

This enzyme is involved in the methionine salvage pathway in certain bacteria.

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=95.36  E-value=0.14  Score=37.11  Aligned_cols=96  Identities=13%  Similarity=-0.006  Sum_probs=58.3

Q ss_pred             chHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Q psy320            3 TNYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLN   81 (202)
Q Consensus         3 ~~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~   81 (202)
                      +.....|+++|+.+....  .-.+++.+..        -++.|||+ |..|.+.-..     .....+.    .++.+ .
T Consensus        59 r~~l~kEakiLeil~g~~--~~p~vy~yg~--------~~i~me~i~G~~L~~~~~~-----~~rk~l~----~vlE~-a  118 (201)
T COG2112          59 RRNLEKEAKILEILAGEG--VTPEVYFYGE--------DFIRMEYIDGRPLGKLEIG-----GDRKHLL----RVLEK-A  118 (201)
T ss_pred             hhhHHHHHHHHHHhhhcC--CCceEEEech--------hhhhhhhhcCcchhhhhhc-----ccHHHHH----HHHHH-H
Confidence            445667999999996554  4455665544        23559999 6687654321     1222322    23333 3


Q ss_pred             HHHhhCCccccCCCC-CceeeecCCcceeEEeeccccccc
Q psy320           82 HLHTKHNLVHTSIKP-ESIFFKADHVYIMTLINIQQATTH  120 (202)
Q Consensus        82 ~lh~~~~ivH~dl~p-~nil~~~~~~~~~~l~Dfg~a~~~  120 (202)
                      |.-+..||-|..|+- ..+++..+.+  +.|+||..|+.-
T Consensus       119 ~~LD~~GI~H~El~~~~k~vlv~~~~--~~iIDFd~At~k  156 (201)
T COG2112         119 YKLDRLGIEHGELSRPWKNVLVNDRD--VYIIDFDSATFK  156 (201)
T ss_pred             HHHHHhccchhhhcCCceeEEecCCc--EEEEEccchhhc
Confidence            433436999998875 3444444444  999999998853

>PRK05231 homoserine kinase; Provisional

Probab=95.35  E-value=0.014  Score=46.08  Aligned_cols=30  Identities=17%  Similarity=0.449  Sum_probs=25.3

Q ss_pred             CccccCCCCCceeeecCCcceeEEeecccccc
Q psy320           88 NLVHTSIKPESIFFKADHVYIMTLINIQQATT  119 (202)
Q Consensus        88 ~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~  119 (202)
                      +++|+|+.|.||+++.+..  ..++||+.+..
T Consensus       188 ~liHgD~~~~Nil~~~~~~--~~iIDf~~~~~  217 (319)
T PRK05231        188 GVIHADLFRDNVLFEGDRL--SGFIDFYFACN  217 (319)
T ss_pred             ccCCCCCCCCcEEEECCce--EEEEecccccC
Confidence            8999999999999985432  58999998865

>TIGR00938 thrB_alt homoserine kinase, Neisseria type

Probab=95.25  E-value=0.041  Score=43.23  Aligned_cols=30  Identities=27%  Similarity=0.564  Sum_probs=26.1

Q ss_pred             CccccCCCCCceeeecCCcceeEEeecccccc
Q psy320           88 NLVHTSIKPESIFFKADHVYIMTLINIQQATT  119 (202)
Q Consensus        88 ~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~  119 (202)
                      +++|+|+.+.|++++.++.  ..++||+.+..
T Consensus       188 ~l~HgD~~~~Nvl~~~~~~--~~vIDfd~~~~  217 (307)
T TIGR00938       188 GVIHADLFPDNVLFDGDSV--KGVIDFYFACT  217 (307)
T ss_pred             ccCCCCCCcCcEEEECCce--EEEeecccccC
Confidence            8999999999999987653  68999999854

Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.

>COG0510 ycfN Thiamine kinase and related kinases [Coenzyme transport and metabolism]

Probab=95.23  E-value=0.042  Score=42.45  Aligned_cols=51  Identities=12%  Similarity=0.231  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHHhh-CCccccCCCCCceeeecCCcceeEEeecccccccc
Q psy320           69 AKIIVNQILEGLNHLHTK-HNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQ  121 (202)
Q Consensus        69 ~~~~~~qi~~~l~~lh~~-~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~  121 (202)
                      +...+..+-.++.-.+.. +-++|+|+.|+|++.+..+.  +.|+||.-|....
T Consensus       134 ~~~~~~~l~~~l~~~~~~~~v~cH~Dl~~~N~l~t~~~~--l~LIDWEyAg~~D  185 (269)
T COG0510         134 LRKKLKELRRALEEVPKDDLVPCHNDLNPGNLLLTDKGG--LFLIDWEYAGLND  185 (269)
T ss_pred             HHHHHHHHHHHhhhcCCCceeeecCCCCccceEEcCCCc--EEEEecccCCCcc
Confidence            333444444455555543 35899999999999988665  9999998876643

>PTZ00384 choline kinase; Provisional

Probab=95.02  E-value=0.091  Score=42.76  Aligned_cols=29  Identities=14%  Similarity=0.062  Sum_probs=24.1

Q ss_pred             CccccCCCCCceeeecCCcceeEEeecccccc
Q psy320           88 NLVHTSIKPESIFFKADHVYIMTLINIQQATT  119 (202)
Q Consensus        88 ~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~  119 (202)
                      .++|+|+.+.||+...+ .  +.++||.-|..
T Consensus       228 VfCHNDL~~gNIL~~~~-~--l~lID~EYA~~  256 (383)
T PTZ00384        228 LFCHNDLFFTNILDFNQ-G--IYFIDFDFAGF  256 (383)
T ss_pred             eeeeccCCcccEEecCC-C--EEEEEeccccC
Confidence            67999999999997543 3  99999988765

>PHA03111 Ser/Thr kinase; Provisional

Probab=95.02  E-value=0.031  Score=44.31  Aligned_cols=54  Identities=19%  Similarity=0.180  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHHHHh-h-C-CccccCCCCCceeeecCCc----------------ceeEEeeccccccc
Q psy320           67 VVAKIIVNQILEGLNHLHT-K-H-NLVHTSIKPESIFFKADHV----------------YIMTLINIQQATTH  120 (202)
Q Consensus        67 ~~~~~~~~qi~~~l~~lh~-~-~-~ivH~dl~p~nil~~~~~~----------------~~~~l~Dfg~a~~~  120 (202)
                      .-++.++.||+.-.-.... . | +++|.||||+|||+-....                .+++|.||..|+..
T Consensus       279 ~YikfifLQiaLLyikIYelp~c~nF~H~DLKPdNILiFds~~~i~I~~~~~~~vF~Epi~~~LnDFDfSqv~  351 (444)
T PHA03111        279 EYIKFIFLQIALLYIKIYELPCCDNFLHVDLKPDNILIFDSDEPISITLKDATYVFNEPIKACLNDFDFSQVA  351 (444)
T ss_pred             HHHHHHHHHHHHHHHhhhcCCCcceeeeccCCCCcEEEecCCCcEEEEECCeEEEeccchhhhhcccCHHHHc
Confidence            4577788887654423322 1 2 6999999999999876542                23667788777653

>TIGR02906 spore_CotS spore coat protein, CotS family

Probab=94.91  E-value=0.079  Score=41.51  Aligned_cols=29  Identities=17%  Similarity=0.306  Sum_probs=24.9

Q ss_pred             CccccCCCCCceeeecCCcceeEEeecccccc
Q psy320           88 NLVHTSIKPESIFFKADHVYIMTLINIQQATT  119 (202)
Q Consensus        88 ~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~  119 (202)
                      +++|+|+.+.||+++. +.  +.++||+.+..
T Consensus       188 ~liHgD~~~~Nil~~~-~~--i~lIDfd~~~~  216 (313)
T TIGR02906       188 GFCHQDYAYHNILLKD-NE--VYVIDFDYCTI  216 (313)
T ss_pred             ceEcCCCCcccEEEeC-Cc--EEEEECccccc
Confidence            7899999999999986 44  78999997654

Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=94.76  E-value=0.35  Score=35.76  Aligned_cols=89  Identities=16%  Similarity=0.188  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHhcCCCccc--eeeeeeeEEec--------------CCceEEEEEEccc-cccHHHHHHHcCCCCCCHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKL--MKLLDHFQVTG--------------INGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVV   68 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~I--v~l~~~~~~~~--------------~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~   68 (202)
                      +..|-+.-.+|++..+.+.  ++.+||..-+.              ......-+|.||. ...           .+... 
T Consensus       101 F~~ECRAfgRLke~~~e~~~Avkc~Gyl~L~~~~q~~~~~~~~~~~~~~~~~aIVKD~v~~~~-----------~~~~~-  168 (207)
T PF13095_consen  101 FNCECRAFGRLKEAGREGLWAVKCHGYLLLTEDQQFEQLRQRGSDHRPLPIRAIVKDFVPDDP-----------PLQIR-  168 (207)
T ss_pred             HHHHHHhhHHHHhccccCceEEEeeEEEEEchHHHHHHhhcccccCCCCccEEEEEeecCCcc-----------ccchh-
Confidence            3445555556654444466  88999986432              1122445788877 222           02222 


Q ss_pred             HHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccc
Q psy320           69 AKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQA  117 (202)
Q Consensus        69 ~~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a  117 (202)
                         -+.+|+.-+..+|. +||+-+|+++.|..     .  -+|+|||.+
T Consensus       169 ---~~~~~~~dl~~~~k-~gI~~~Dv~~~ny~-----~--G~lvDfs~~  206 (207)
T PF13095_consen  169 ---DIPQMLRDLKILHK-LGIVPRDVKPRNYR-----G--GKLVDFSSS  206 (207)
T ss_pred             ---HHHHHHHHHHHHHH-CCeeeccCcccccc-----C--CEEEecccC
Confidence               35677888889999 69999999999985     1  589999864

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=94.73  E-value=0.023  Score=44.25  Aligned_cols=31  Identities=19%  Similarity=0.448  Sum_probs=26.3

Q ss_pred             CccccCCCCCceeeecCCcceeEEeeccccccc
Q psy320           88 NLVHTSIKPESIFFKADHVYIMTLINIQQATTH  120 (202)
Q Consensus        88 ~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~  120 (202)
                      +++|+|+.|.|++++.++.  +.++||+.+...
T Consensus       176 ~l~HgD~~~~Nil~~~~~~--~~iIDfe~a~~g  206 (296)
T cd05153         176 GVIHADLFRDNVLFDGDEL--SGVIDFYFACTD  206 (296)
T ss_pred             cCCccCcCcccEEEeCCce--EEEeehhhhcCc
Confidence            7999999999999987653  689999887653

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2

Probab=94.67  E-value=0.034  Score=41.12  Aligned_cols=31  Identities=23%  Similarity=0.435  Sum_probs=20.4

Q ss_pred             CccccCCCCCceee-ecCCcceeEEeeccccccc
Q psy320           88 NLVHTSIKPESIFF-KADHVYIMTLINIQQATTH  120 (202)
Q Consensus        88 ~ivH~dl~p~nil~-~~~~~~~~~l~Dfg~a~~~  120 (202)
                      .++|+|+.|.||++ ..++.  ++++||..|...
T Consensus       144 v~cHnDl~~~Nil~~~~~~~--~~lIDfEya~~n  175 (211)
T PF01633_consen  144 VFCHNDLNPGNILINNKDGE--VKLIDFEYAGYN  175 (211)
T ss_dssp             EEE-S--SGGGEEETSSSSC--EEE--GTT-EEE
T ss_pred             eEeeccCccccEEeccCCCe--EEEecHHHHhhc
Confidence            58999999999999 55555  999999888653

7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....

>PF05445 Pox_ser-thr_kin: Poxvirus serine/threonine protein kinase; InterPro: IPR008790 This family of proteins contain poxvirus serine/threonine protein kinases, which are essential for phosphorylation of virion proteins during virion assembly

Probab=94.47  E-value=0.043  Score=43.71  Aligned_cols=79  Identities=14%  Similarity=0.050  Sum_probs=45.0

Q ss_pred             EEEEccccccHHHHHHHcC-CCCCC--HHHHHHHHHHHHHHHH---HHHhhCCccccCCCCCceeeecCCc---------
Q psy320           42 CTVTEIMAECLCNYMIRQK-FQPAP--LVVAKIIVNQILEGLN---HLHTKHNLVHTSIKPESIFFKADHV---------  106 (202)
Q Consensus        42 ~lv~e~~~~sL~~~~~~~~-~~~~~--~~~~~~~~~qi~~~l~---~lh~~~~ivH~dl~p~nil~~~~~~---------  106 (202)
                      .+|++.+.+|-.++-.+.. .-++.  ..-++.++.||+.-.-   .+-...+++|.||||+|||+-....         
T Consensus       247 IIIfPLA~~Sadkv~~~~~~e~GF~s~~~YvkfifLQiaLLyikIYelp~c~nF~H~DLKPdNILiFds~~~i~I~~~~~  326 (434)
T PF05445_consen  247 IIIFPLARCSADKVTESNAAELGFKSNVEYVKFIFLQIALLYIKIYELPCCTNFLHVDLKPDNILIFDSKEPIRIKFGNR  326 (434)
T ss_pred             EEEEehhhcchhhcCHHHHHhcCchhHHHHHHHHHHHHHHHHeeeecCCCcceeeecccCcCcEEEecCCCceEEEECCe
Confidence            4778777444333222111 01122  2446667777654321   1222126999999999999876433         


Q ss_pred             -------ceeEEeeccccccc
Q psy320          107 -------YIMTLINIQQATTH  120 (202)
Q Consensus       107 -------~~~~l~Dfg~a~~~  120 (202)
                             .+++|.||..|+..
T Consensus       327 ~~vF~Epi~~~LnDFDfSqv~  347 (434)
T PF05445_consen  327 NYVFKEPIRCCLNDFDFSQVA  347 (434)
T ss_pred             EEEecccceeeecccCHHHhc
Confidence                   34678888887754

; GO: 0004672 protein kinase activity, 0005524 ATP binding

>PRK10271 thiK thiamine kinase; Provisional

Probab=94.26  E-value=0.044  Score=39.87  Aligned_cols=31  Identities=16%  Similarity=0.275  Sum_probs=25.7

Q ss_pred             CccccCCCCCceeeecCCcceeEEeecccccccc
Q psy320           88 NLVHTSIKPESIFFKADHVYIMTLINIQQATTHQ  121 (202)
Q Consensus        88 ~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~  121 (202)
                      ..+|+|+.|.|++++.++   ++++||+.|....
T Consensus        78 ~p~H~D~~~~N~~~~~~~---~~lIDwe~a~~gD  108 (188)
T PRK10271         78 APLHMDVHAGNLVHSASG---LRLIDWEYAGDGD  108 (188)
T ss_pred             eeecCCCCCccEEEECCC---EEEEeCCcccCCC
Confidence            469999999999987654   8899999987654

>smart00587 CHK ZnF_C4 abd HLH domain containing kinases domain

Probab=94.01  E-value=0.051  Score=39.86  Aligned_cols=33  Identities=27%  Similarity=0.278  Sum_probs=26.6

Q ss_pred             CccccCCCCCceeeecCCcc---eeEEeeccccccc
Q psy320           88 NLVHTSIKPESIFFKADHVY---IMTLINIQQATTH  120 (202)
Q Consensus        88 ~ivH~dl~p~nil~~~~~~~---~~~l~Dfg~a~~~  120 (202)
                      .++|+|+.+.|+++..++.+   .+.++||..+...
T Consensus       121 vl~HgD~~~~N~~~~~~~~~~~~~~~liDfq~~~~g  156 (196)
T smart00587      121 VLNHGDLWANNIMFKYDDEGKPEDVALIDFQLSHYG  156 (196)
T ss_pred             EEeeCCCCccceeeccCCCCCccceEEEecccCCcC
Confidence            68999999999999865421   4899999987664

subfamily of choline kinases

>TIGR02721 ycfN_thiK thiamine kinase

Probab=93.97  E-value=0.044  Score=41.82  Aligned_cols=31  Identities=13%  Similarity=0.269  Sum_probs=26.1

Q ss_pred             CccccCCCCCceeeecCCcceeEEeecccccccc
Q psy320           88 NLVHTSIKPESIFFKADHVYIMTLINIQQATTHQ  121 (202)
Q Consensus        88 ~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~  121 (202)
                      .++|+|+.|.||+++.++   +.++||+.|....
T Consensus       147 ~l~H~Dl~~~Nil~~~~~---~~lIDwE~a~~gd  177 (256)
T TIGR02721       147 APLHMDVHAYNLVVTPQG---LKLIDWEYASDGD  177 (256)
T ss_pred             eeecCCCCcCcEEEeCCC---CEEEeccccCcCC
Confidence            589999999999998754   7899999887643

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>KOG1826|consensus

Probab=93.74  E-value=0.055  Score=51.12  Aligned_cols=132  Identities=9%  Similarity=-0.077  Sum_probs=86.5

Q ss_pred             CccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCH-HHHHHHHHHH-HHHHHHHHhhC----CccccC
Q psy320           21 SDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPL-VVAKIIVNQI-LEGLNHLHTKH----NLVHTS   93 (202)
Q Consensus        21 h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~-~~~~~~~~qi-~~~l~~lh~~~----~ivH~d   93 (202)
                      |+++.....-...  .+....+.+++|+ +|.+.+.+.+...+.-+. .......+++ +.+....|+.-    -.+|++
T Consensus      1288 h~~~~~~p~rI~p--s~s~ee~~r~~~~~~g~~f~iIikg~ee~~~ld~~~v~~~~kvsvl~~~~~ls~tnlg~T~v~~~ 1365 (2724)
T KOG1826|consen 1288 HYLTEVDPLRIPP--SESTEEYIRSLYVEFGKLFSIIIKGLEESPDLDRSPVHLRHKVSVLNRNVILSLTNLGNTNVSKS 1365 (2724)
T ss_pred             ceeeecccccCCC--CCChHHHHHHHHHHHhHHHHHHHhccccCCcchhchHHHHHHHHHhccchhhhcccCCccchhhh
Confidence            3355544333321  1344667888999 999999998765332221 2234444555 66666666521    268999


Q ss_pred             CCCCceeeecCCcceeEEeecccccccccccCCC-CCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           94 IKPESIFFKADHVYIMTLINIQQATTHQECHDQQ-SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        94 l~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~-~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      +++.|.++...-+  +++.++|+.+...+..... ...+++.|+.+++.-...      ++.++|+|+.+
T Consensus      1366 Lkf~lpmIVtny~--v~~gk~gLdKIknp~~sf~Gl~l~sp~~v~qli~N~ik------~t~rsdilr~s 1427 (2724)
T KOG1826|consen 1366 LKFTLPMIVTNYN--VKLGKGGLDKIKNPVLSFFGLELCSPIYVLQLIKNEIK------FTKRSDILRRS 1427 (2724)
T ss_pred             hhhhccceecCCc--ccccccccccccCchHhhhhhhhCCHHHHHHHHHHHHh------hhhHHHHHHHH
Confidence            9999999987666  9999999998433222222 346777888988877555      67679999853

>PLN02236 choline kinase

Probab=93.36  E-value=0.14  Score=41.09  Aligned_cols=32  Identities=16%  Similarity=0.354  Sum_probs=26.2

Q ss_pred             CccccCCCCCceeeecCCcceeEEeeccccccc
Q psy320           88 NLVHTSIKPESIFFKADHVYIMTLINIQQATTH  120 (202)
Q Consensus        88 ~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~  120 (202)
                      .++|+|+++.||+++.++. .+.++||..|...
T Consensus       201 ~~cH~Dl~~~Nil~~~~~~-~~~lID~Eya~~~  232 (344)
T PLN02236        201 GFCHNDLQYGNIMIDEETR-AITIIDYEYASYN  232 (344)
T ss_pred             eEEeCCCCcCcEEEeCCCC-cEEEEeehhcccc
Confidence            5899999999999986432 4999999888754

>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2')

Probab=93.19  E-value=0.08  Score=41.07  Aligned_cols=33  Identities=27%  Similarity=0.440  Sum_probs=26.6

Q ss_pred             CccccCCCCCceeeecCCcceeEEeecccccccc
Q psy320           88 NLVHTSIKPESIFFKADHVYIMTLINIQQATTHQ  121 (202)
Q Consensus        88 ~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~  121 (202)
                      .++|+|++|.||+++.++. ...++||+.+....
T Consensus       186 ~lvHGD~~~~Nilv~~~~~-~~gviDWe~a~iGD  218 (276)
T cd05152         186 VLVHGDLHPGHILIDEDAR-VTGLIDWTEAKVGD  218 (276)
T ss_pred             eeEeCCCCCCcEEEeCCCC-EEEEECcHhcccCC
Confidence            5899999999999986433 35799999987654

MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported

>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]

Probab=92.89  E-value=0.18  Score=40.19  Aligned_cols=30  Identities=20%  Similarity=0.564  Sum_probs=26.2

Q ss_pred             ccccCCCCCceeeecCCcceeEEeecccccc
Q psy320           89 LVHTSIKPESIFFKADHVYIMTLINIQQATT  119 (202)
Q Consensus        89 ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~  119 (202)
                      ++|+|+.|.||+++.+.. ...++||+.+..
T Consensus       199 iIH~D~~~~NVl~d~~~~-~~g~iDFdDa~~  228 (331)
T COG2334         199 IIHGDLHPDNVLFDDDTD-VSGFIDFDDAGY  228 (331)
T ss_pred             eeecCCCccceeEcCCCC-eeeEEEcccccc
Confidence            999999999999998763 378999999865

>PRK06148 hypothetical protein; Provisional

Probab=92.58  E-value=0.19  Score=46.14  Aligned_cols=33  Identities=21%  Similarity=0.301  Sum_probs=26.6

Q ss_pred             CccccCCCCCceeeecCCccee-EEeeccccccc
Q psy320           88 NLVHTSIKPESIFFKADHVYIM-TLINIQQATTH  120 (202)
Q Consensus        88 ~ivH~dl~p~nil~~~~~~~~~-~l~Dfg~a~~~  120 (202)
                      +++|+|+.+.||+++.++..++ -|+|||.+...
T Consensus       204 ~vIHgDln~~NiLv~~~~~~~isGiIDFgDa~~~  237 (1013)
T PRK06148        204 QVIHNDANDYNILVDADDGERISGLIDFGDAVHA  237 (1013)
T ss_pred             ceECCCCCcccEEEcCCCCcceEEEEECcccccc
Confidence            7999999999999997752234 59999998753

>PLN02421 phosphotransferase, alcohol group as acceptor/kinase

Probab=92.40  E-value=0.11  Score=41.41  Aligned_cols=30  Identities=10%  Similarity=0.325  Sum_probs=25.4

Q ss_pred             ccccCCCCCceeeecC-CcceeEEeeccccccc
Q psy320           89 LVHTSIKPESIFFKAD-HVYIMTLINIQQATTH  120 (202)
Q Consensus        89 ivH~dl~p~nil~~~~-~~~~~~l~Dfg~a~~~  120 (202)
                      ++|+|+.+.||+++.+ +.  ++++||..|...
T Consensus       184 ~CHnDl~~~NiL~~~~~~~--l~lID~EYag~n  214 (330)
T PLN02421        184 FAHNDLLSGNLMLNEDEGK--LYFIDFEYGSYS  214 (330)
T ss_pred             EEECCCCcccEEEeCCCCc--EEEEcccccCCC
Confidence            7999999999999754 44  999999888654

>KOG1236|consensus

Probab=92.40  E-value=0.51  Score=38.86  Aligned_cols=63  Identities=13%  Similarity=0.269  Sum_probs=48.9

Q ss_pred             EEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCC
Q psy320           40 HVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADH  105 (202)
Q Consensus        40 ~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~  105 (202)
                      ...++-+|. |.++..+++..+   .+++..+.++.-.+.|+.-+--..+++|.|+.|.||++....
T Consensus       319 ~~vl~E~~~~Gl~v~~~v~~~~---~pe~l~kkva~lg~~AllkMl~vDNFvHaDlHPGNVlirf~~  382 (565)
T KOG1236|consen  319 DLVLVETYERGLSVLRFVKWKS---QPEALVKKVAKLGVNALLKMLIVDNFVHADLHPGNVLIRFNK  382 (565)
T ss_pred             cceeeeeccccccHHhhhhccc---ChHHHHHHHHHHHHHHHHHHHHhhcceecccCCCcEEEEecC
Confidence            455666777 889988887654   677788888888888877655534899999999999997654

>PF02958 EcKinase: Ecdysteroid kinase; InterPro: IPR004119 This family includes proteins of unknown function

Probab=91.77  E-value=0.096  Score=40.79  Aligned_cols=32  Identities=31%  Similarity=0.314  Sum_probs=26.4

Q ss_pred             ccccCCCCCceeeecCCcc---eeEEeeccccccc
Q psy320           89 LVHTSIKPESIFFKADHVY---IMTLINIQQATTH  120 (202)
Q Consensus        89 ivH~dl~p~nil~~~~~~~---~~~l~Dfg~a~~~  120 (202)
                      ++|+|+++.|||+..++.+   .+++.||..++..
T Consensus       217 l~HGD~w~nNilf~~~~~g~~~~~~liDfQ~~~~g  251 (294)
T PF02958_consen  217 LCHGDFWTNNILFKYDDDGKPIDVVLIDFQLARYG  251 (294)
T ss_pred             EEcCccCHHhEeEccccccccccceeeccccccCC
Confidence            8999999999999876442   5899999887654

All known members of this group are proteins from drosophila and Caenorhabditis elegans.

>TIGR02904 spore_ysxE spore coat protein YsxE

Probab=91.69  E-value=0.11  Score=40.98  Aligned_cols=31  Identities=19%  Similarity=0.283  Sum_probs=27.0

Q ss_pred             CccccCCCCCceeeecCCcceeEEeeccccccc
Q psy320           88 NLVHTSIKPESIFFKADHVYIMTLINIQQATTH  120 (202)
Q Consensus        88 ~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~  120 (202)
                      +++|+|+.+.|++++.++.  +.++||..+..-
T Consensus       197 ~lcHgD~~~~Nvl~~~~~~--~~iIDfd~~~~d  227 (309)
T TIGR02904       197 VLVHGKLSLSHFLYDETRG--GYFINFEKASFA  227 (309)
T ss_pred             eeeCCCCcHHhEEEcCCCC--EEEEEhhhcccC
Confidence            6999999999999987766  899999887653

Members of this family are homologs of the Bacillus subtilis spore coat protein CotS. Members of this family, designated YsxE, are found only in the family Bacillaceae, from among the endospore-forming members of the Firmicutes branch of the Bacteria. As a rule, the ysxE gene is found immediately downstream of spoVID, a gene necessary for spore coat assembly. The protein has been shown to be part of the spore coat.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	202
1wbp_A	397	Srpk1 Bound To 9mer Docking Motif Peptide Length =		4e-18
3beg_A	381	Crystal Structure Of Sr Protein Kinase 1 Complexed		4e-18
2x7g_A	389	Structure Of Human Serine-Arginine-Rich Protein-Spe		4e-17
1q8y_A	373	The Structure Of The Yeast Sr Protein Kinase, Sky1p		9e-12
1how_A	373	The X-Ray Crystal Structure Of Sky1p, An Sr Protein		9e-12
3hzt_A	467	Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme4		5e-05
3dxn_A	287	Crystal Structure Of The Calcium-dependent Kinase F		8e-05
2exe_A	357	Crystal Structure Of The Phosphorylated Clk3 Length		2e-04
2wu6_A	381	Crystal Structure Of The Human Clk3 In Complex With		2e-04
2eu9_A	355	Crystal Structure Of Clk3 Length = 355		2e-04
3lij_A	494	Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820)		4e-04
3q5i_A	504	Crystal Structure Of Pbanka_031420 Length = 504		8e-04

>pdb|1WBP|A Chain A, Srpk1 Bound To 9mer Docking Motif Peptide Length = 397

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 78/138 (56%), Gaps = 7/138 (5%)
Query: 2   HTNYATNLIKTLIEIQ-KHPSDK----LMKLLDHFQVTGINGTHVCTVTEIMAECLCNYM 56
           +T  A + I+ L  ++   P+D     +++LLD F+++G+NGTH+C V E++   L  ++
Sbjct: 76  YTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHICMVFEVLGHHLLKWI 135
Query: 57  IRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQ 116
           I+  +Q  PL   K I+ Q+L+GL++LHTK  ++HT IKPE+I    +  YI  L    +
Sbjct: 136 IKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLSVNEQYIRRL--AAE 193
Query: 117 ATTHQECHDQQSSSKTKS 134
           AT  Q       S    S
Sbjct: 194 ATEWQRSGAPPPSGSAVS 211

>pdb|3BEG|A Chain A, Crystal Structure Of Sr Protein Kinase 1 Complexed To Its Substrate AsfSF2 Length = 381

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 42/111 (37%), Positives = 66/111 (59%), Gaps = 2/111 (1%)
Query: 24  LMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL 83
           +++LLD F+++G+NGTH+C V E++   L  ++I+  +Q  PL   K I+ Q+L+GL++L
Sbjct: 87  VVQLLDDFKISGVNGTHICMVFEVLGHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYL 146
Query: 84  HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKS 134
           HTK  ++HT IKPE+I    +  YI  L    +AT  Q       S    S
Sbjct: 147 HTKCRIIHTDIKPENILLSVNEQYIRRL--AAEATEWQRSGAPPPSGSAVS 195

>pdb|2X7G|A Chain A, Structure Of Human Serine-Arginine-Rich Protein-Specific Kinase 2 (Srpk2) Bound To Purvalanol B Length = 389

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 67/113 (59%), Gaps = 2/113 (1%)
Query: 22  DKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLN 81
           D +++L+D F+++G+NG HVC V E++   L  ++I+  +Q  P+   K I+ Q+L+GL+
Sbjct: 95  DMVVQLIDDFKISGMNGIHVCMVFEVLGHHLLKWIIKSNYQGLPVRCVKSIIRQVLQGLD 154
Query: 82  HLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKS 134
           +LH+K  ++HT IKPE+I    D  Y+  +    +AT  Q+      S    S
Sbjct: 155 YLHSKCKIIHTDIKPENILMCVDDAYVRRM--AAEATEWQKAGAPPPSGSAVS 205

>pdb|1Q8Y|A Chain A, The Structure Of The Yeast Sr Protein Kinase, Sky1p, With Bound Adp Length = 373

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 51/82 (62%)
Query: 21  SDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGL 80
           ++ ++KLLDHF   G NG HV  V E++ E L   + + + +  PL+  K I  Q+L GL
Sbjct: 85  ANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGL 144
Query: 81  NHLHTKHNLVHTSIKPESIFFK 102
           +++H +  ++HT IKPE++  +
Sbjct: 145 DYMHRRCGIIHTDIKPENVLME 166

>pdb|1HOW|A Chain A, The X-Ray Crystal Structure Of Sky1p, An Sr Protein Kinase In Yeast Length = 373

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 51/82 (62%)
Query: 21  SDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGL 80
           ++ ++KLLDHF   G NG HV  V E++ E L   + + + +  PL+  K I  Q+L GL
Sbjct: 85  ANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGL 144
Query: 81  NHLHTKHNLVHTSIKPESIFFK 102
           +++H +  ++HT IKPE++  +
Sbjct: 145 DYMHRRCGIIHTDIKPENVLME 166

>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme49_105860 Length = 467

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 12/87 (13%)
Query: 19  HPSDKLMKLLDHFQVTGINGTHVCTVTEIM--AECLCNYMIRQKFQPAPLVVAKIIVNQI 76
           HP+  +MKL + F+    +  +   V E+    E     ++RQKF     V A +I+ Q+
Sbjct: 63  HPN--IMKLYEFFE----DKRNYYLVMEVYRGGELFDEIILRQKFSE---VDAAVIMKQV 113
Query: 77  LEGLNHLHTKHNLVHTSIKPESIFFKA 103
           L G  +LH KHN+VH  +KPE++  ++
Sbjct: 114 LSGTTYLH-KHNIVHRDLKPENLLLES 139

>pdb|3DXN|A Chain A, Crystal Structure Of The Calcium-dependent Kinase From Toxoplasma Gondii, 541.m00134, Kinase Domain Length = 287

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 12/87 (13%)
Query: 19  HPSDKLMKLLDHFQVTGINGTHVCTVTEIM--AECLCNYMIRQKFQPAPLVVAKIIVNQI 76
           HP+  +MKL + F+    +  +   V E+    E     ++RQKF     V A +I+ Q+
Sbjct: 80  HPN--IMKLYEFFE----DKRNYYLVMEVYRGGELFDEIILRQKFSE---VDAAVIMKQV 130
Query: 77  LEGLNHLHTKHNLVHTSIKPESIFFKA 103
           L G  +LH KHN+VH  +KPE++  ++
Sbjct: 131 LSGTTYLH-KHNIVHRDLKPENLLLES 156

>pdb|2EXE|A Chain A, Crystal Structure Of The Phosphorylated Clk3 Length = 357

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 8   NLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLV 67
           N++K + E  K      + + D F   G    H+C   E++ +    ++    FQP PL 
Sbjct: 77  NVLKKIKEKDKENKFLCVLMSDWFNFHG----HMCIAFELLGKNTFEFLKENNFQPYPLP 132
Query: 68  VAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFF 101
             + +  Q+   L  LH ++ L HT +KPE+I F
Sbjct: 133 HVRHMAYQLCHALRFLH-ENQLTHTDLKPENILF 165

>pdb|2WU6|A Chain A, Crystal Structure Of The Human Clk3 In Complex With Dki Length = 381

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 8   NLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLV 67
           N++K + E  K      + + D F   G    H+C   E++ +    ++    FQP PL 
Sbjct: 100 NVLKKIKEKDKENKFLCVLMSDWFNFHG----HMCIAFELLGKNTFEFLKENNFQPYPLP 155
Query: 68  VAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFF 101
             + +  Q+   L  LH ++ L HT +KPE+I F
Sbjct: 156 HVRHMAYQLCHALRFLH-ENQLTHTDLKPENILF 188

>pdb|2EU9|A Chain A, Crystal Structure Of Clk3 Length = 355

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 8   NLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLV 67
           N++K + E  K      + + D F   G    H+C   E++ +    ++    FQP PL 
Sbjct: 68  NVLKKIKEKDKENKFLCVLMSDWFNFHG----HMCIAFELLGKNTFEFLKENNFQPYPLP 123
Query: 68  VAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFF 101
             + +  Q+   L  LH ++ L HT +KPE+I F
Sbjct: 124 HVRHMAYQLCHALRFLH-ENQLTHTDLKPENILF 156

>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In Complex With Ca2+ And Amppnp Length = 494

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 12/94 (12%)
Query: 12  TLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM--AECLCNYMIRQKFQPAPLVVA 69
            ++++  HP+  +MKL D F+    +  +   V E     E     + R KF     V A
Sbjct: 88  AVLKLLDHPN--IMKLYDFFE----DKRNYYLVMECYKGGELFDEIIHRMKFNE---VDA 138
Query: 70  KIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKA 103
            +I+ Q+L G+ +LH KHN+VH  +KPE++  ++
Sbjct: 139 AVIIKQVLSGVTYLH-KHNIVHRDLKPENLLLES 171

>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420 Length = 504

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 16/106 (15%)
Query: 12  TLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM--AECLCNYMIRQKFQPAPLVVA 69
           +L++   HP+  ++KL D F+    +  +   VTE     E     + R KF       A
Sbjct: 98  SLLKSLDHPN--IIKLFDVFE----DKKYFYLVTEFYEGGELFEQIINRHKFDECD---A 148
Query: 70  KIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQ 115
             I+ QIL G+ +LH KHN+VH  IKPE+I  +  +    +L+NI+
Sbjct: 149 ANIMKQILSGICYLH-KHNIVHRDIKPENILLENKN----SLLNIK 189

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	202
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	2e-22
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	4e-19
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	3e-14
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	5e-12
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	1e-11
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	4e-11
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	7e-11
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	9e-08
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	2e-07
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	2e-07
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	3e-07
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	3e-07
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	4e-07
2dyl_A	318	Dual specificity mitogen-activated protein kinase	1e-06
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	2e-06
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	2e-06
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	5e-06
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	6e-06
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	6e-06
3fme_A	290	Dual specificity mitogen-activated protein kinase;	6e-06
3an0_A	340	Dual specificity mitogen-activated protein kinase;	8e-06
3aln_A	327	Dual specificity mitogen-activated protein kinase;	1e-05
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	1e-05
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	1e-05
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	2e-05
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	4e-05
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	5e-05
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	5e-05
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	6e-05
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	7e-05
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	7e-05
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	7e-05
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	8e-05
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	9e-05
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	9e-05
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	1e-04
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	1e-04
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	1e-04
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	1e-04
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	2e-04
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	2e-04
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	2e-04
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	3e-04
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	3e-04
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	4e-04
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	4e-04
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	5e-04
2a19_B	284	Interferon-induced, double-stranded RNA-activated	5e-04
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	5e-04
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	5e-04
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	6e-04
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	7e-04
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	7e-04
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	7e-04
3bhy_A	283	Death-associated protein kinase 3; death associate	7e-04
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	8e-04
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	8e-04
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	9e-04

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* Length = 397

 Score = 92.7 bits (230), Expect = 2e-22
 Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 2/139 (1%)

Query: 17  QKHP-SDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQ 75
              P  + +++LLD F+++G+NGTH+C V E++   L  ++I+  +Q  PL   K I+ Q
Sbjct: 95  PNDPNREMVVQLLDDFKISGVNGTHICMVFEVLGHHLLKWIIKSNYQGLPLPCVKKIIQQ 154

Query: 76  ILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSK 135
           +L+GL++LHTK  ++HT IKPE+I    +  YI   +  +     +      S S   + 
Sbjct: 155 VLQGLDYLHTKCRIIHTDIKPENILLSVNEQYIRR-LAAEATEWQRSGAPPPSGSAVSTA 213

Query: 136 IFCEILEQCRLNQDFRLDP 154
                       +    + 
Sbjct: 214 PATAGNFLVNPLEPKNAEK 232

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A Length = 373

 Score = 82.8 bits (205), Expect = 4e-19
 Identities = 30/77 (38%), Positives = 47/77 (61%)

Query: 26  KLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT 85
           KLLDHF   G NG HV  V E++ E L   + + + +  PL+  K I  Q+L GL+++H 
Sbjct: 90  KLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHR 149

Query: 86  KHNLVHTSIKPESIFFK 102
           +  ++HT IKPE++  +
Sbjct: 150 RCGIIHTDIKPENVLME 166

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} Length = 360

 Score = 69.3 bits (170), Expect = 3e-14
 Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 7/126 (5%)

Query: 10  IKTLIEIQKHPSDK--LMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLV 67
              L +IQ    +   ++K    F        H+C + E +   L   + R  +    + 
Sbjct: 82  ADILKKIQNDDINNNNIVKYHGKFMYYD----HMCLIFEPLGPSLYEIITRNNYNGFHIE 137

Query: 68  VAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ 127
             K+   +IL+ LN+L  K +L HT +KPE+I     +     +   +     +    + 
Sbjct: 138 DIKLYCIEILKALNYLR-KMSLTHTDLKPENILLDDPYFEKSLITVRRVTDGKKIQIYRT 196

Query: 128 SSSKTK 133
            S+  K
Sbjct: 197 KSTGIK 202

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* Length = 429

 Score = 62.8 bits (153), Expect = 5e-12
 Identities = 24/95 (25%), Positives = 50/95 (52%), Gaps = 5/95 (5%)

Query: 8   NLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLV 67
            +++ L +  K  +  ++ +L++F        H+C   E+++  L   + + KFQ   L 
Sbjct: 145 RILEHLRKQDKDNTMNVIHMLENFTFRN----HICMTFELLSMNLYELIKKNKFQGFSLP 200

Query: 68  VAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFK 102
           + +   + IL+ L+ LH K+ ++H  +KPE+I  K
Sbjct: 201 LVRKFAHSILQCLDALH-KNRIIHCDLKPENILLK 234

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* Length = 355

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 8/93 (8%)

Query: 10  IKTLIEIQKH-PSDK--LMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPL 66
           I  L +I++    +K   + + D F   G    H+C   E++ +    ++    FQP PL
Sbjct: 67  INVLKKIKEKDKENKFLCVLMSDWFNFHG----HMCIAFELLGKNTFEFLKENNFQPYPL 122

Query: 67  VVAKIIVNQILEGLNHLHTKHNLVHTSIKPESI 99
              + +  Q+   L  LH ++ L HT +KPE+I
Sbjct: 123 PHVRHMAYQLCHALRFLH-ENQLTHTDLKPENI 154

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* Length = 382

 Score = 60.1 bits (146), Expect = 4e-11
 Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 8/97 (8%)

Query: 10  IKTLIEIQKH-PSDK--LMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPL 66
           ++ L  + KH    K  ++ L  HF        H+C V E+++  L + +    F+   L
Sbjct: 101 VRLLELMNKHDTEMKYYIVHLKRHFMFRN----HLCLVFEMLSYNLYDLLRNTNFRGVSL 156

Query: 67  VVAKIIVNQILEGLNHLHT-KHNLVHTSIKPESIFFK 102
            + +    Q+   L  L T + +++H  +KPE+I   
Sbjct: 157 NLTRKFAQQMCTALLFLATPELSIIHCDLKPENILLC 193

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A* Length = 339

 Score = 59.2 bits (144), Expect = 7e-11
 Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 8/96 (8%)

Query: 10  IKTLIEIQKH-PSDK--LMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPL 66
           I+ L  +    P+     +++L+ F+  G    H+C V E++     +++    F P  L
Sbjct: 62  IQVLEHLNTTDPNSTFRCVQMLEWFEHHG----HICIVFELLGLSTYDFIKENGFLPFRL 117

Query: 67  VVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFK 102
              + +  QI + +N LH  + L HT +KPE+I F 
Sbjct: 118 DHIRKMAYQICKSVNFLH-SNKLTHTDLKPENILFV 152

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 50.0 bits (120), Expect = 9e-08
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 12/92 (13%)

Query: 14  IEIQK---HPSDKLMKLLDHFQVTGINGTHVCTVTEIMAEC-LCNYMIRQKFQPAPLVVA 69
           I         SDK+++L D+         ++  V E      L +++  +K +       
Sbjct: 77  IAYLNKLQQHSDKIIRLYDYEI----TDQYIYMVME-CGNIDLNSWL--KKKKSIDPWER 129

Query: 70  KIIVNQILEGLNHLHTKHNLVHTSIKPESIFF 101
           K     +LE ++ +H +H +VH+ +KP +   
Sbjct: 130 KSYWKNMLEAVHTIH-QHGIVHSDLKPANFLI 160

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 12/92 (13%)

Query: 14  IEIQK---HPSDKLMKLLDHFQVTGINGTHVCTVTEIMAEC-LCNYMIRQKFQPAPLVVA 69
           I         SDK+++L D+         ++  V E      L +++  +K +       
Sbjct: 58  IAYLNKLQQHSDKIIRLYDYEI----TDQYIYMVME-CGNIDLNSWL--KKKKSIDPWER 110

Query: 70  KIIVNQILEGLNHLHTKHNLVHTSIKPESIFF 101
           K     +LE ++ +H +H +VH+ +KP +   
Sbjct: 111 KSYWKNMLEAVHTIH-QHGIVHSDLKPANFLI 141

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 8/93 (8%)

Query: 10  IKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVA 69
           ++ L E  +HP+  +++     +    +        E+ A  L  Y+ ++ F    L   
Sbjct: 68  VQLLRESDEHPN--VIRYFCTEK----DRQFQYIAIELCAATLQEYVEQKDFAHLGLEPI 121

Query: 70  KIIVNQILEGLNHLHTKHNLVHTSIKPESIFFK 102
            ++  Q   GL HLH   N+VH  +KP +I   
Sbjct: 122 TLLQ-QTTSGLAHLH-SLNIVHRDLKPHNILIS 152

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 49.0 bits (117), Expect = 3e-07
 Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 12/98 (12%)

Query: 10  IKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVV- 68
           IK L E   HP+  +++              +    E+    L + +  +      L + 
Sbjct: 59  IKLLTESDDHPN--VIRYYCSET----TDRFLYIALELCNLNLQDLVESKNVSDENLKLQ 112

Query: 69  ----AKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFK 102
                  ++ QI  G+ HLH    ++H  +KP++I   
Sbjct: 113 KEYNPISLLRQIASGVAHLH-SLKIIHRDLKPQNILVS 149

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 48.5 bits (115), Expect = 3e-07
 Identities = 13/102 (12%), Positives = 32/102 (31%), Gaps = 11/102 (10%)

Query: 13  LIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYM-----IRQKFQPAPLV 67
            + +Q  P     +L        +   +   +    +  L         +        ++
Sbjct: 139 AVAVQSQP--PFAQLSPGQDDYAV--ANYLLLMPAASVDLELLFSTLDFVYVFRGDEGIL 194

Query: 68  VAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKAD-HVYI 108
              I+  Q++    +L     LVH    P+++F   D  + +
Sbjct: 195 ALHILTAQLIRLAANLQ-SKGLVHGHFTPDNLFIMPDGRLML 235

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 48.3 bits (115), Expect = 4e-07
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 12/92 (13%)

Query: 14  IEIQK---HPSDKLMKLLDHFQVTGINGTHVCTVTEIMAEC-LCNYMIRQKFQPAPLVVA 69
           I         SDK+++L D+         ++  V E      L +++  +K +       
Sbjct: 105 IAYLNKLQQHSDKIIRLYDYEI----TDQYIYMVME-CGNIDLNSWL--KKKKSIDPWER 157

Query: 70  KIIVNQILEGLNHLHTKHNLVHTSIKPESIFF 101
           K     +LE ++ +H +H +VH+ +KP +   
Sbjct: 158 KSYWKNMLEAVHTIH-QHGIVHSDLKPANFLI 188

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 24  LMKLLDHFQVTG-----INGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILE 78
           ++K  D   +       I  T V    E+M  C    + ++   P P  +   +   I++
Sbjct: 77  VLKSHDCPYIVQCFGTFITNTDVFIAMELMGTCAEK-LKKRMQGPIPERILGKMTVAIVK 135

Query: 79  GLNHLHTKHNLVHTSIKPESI 99
            L +L  KH ++H  +KP +I
Sbjct: 136 ALYYLKEKHGVIHRDVKPSNI 156

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 6/85 (7%)

Query: 18  KHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAE-CLCNYMIRQKFQPAPLVVAKIIVNQI 76
           +HP+  +++  D ++ T      +  VTE+M    L  Y   ++F+   + V +    QI
Sbjct: 83  QHPN--IVRFYDSWESTVKGKKCIVLVTELMTSGTLKTY--LKRFKVMKIKVLRSWCRQI 138

Query: 77  LEGLNHLHTKHNLV-HTSIKPESIF 100
           L+GL  LHT+   + H  +K ++IF
Sbjct: 139 LKGLQFLHTRTPPIIHRDLKCDNIF 163

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 8/98 (8%)

Query: 10  IKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVA 69
           + +  ++ +HP    ++L   ++     G  +   TE+    L  +         P    
Sbjct: 107 VGSHEKVGQHPC--CVRLEQAWE----EGGILYLQTELCGPSLQQHCEAWG-ASLPEAQV 159

Query: 70  KIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVY 107
              +   L  L HLH    LVH  +KP +IF       
Sbjct: 160 WGYLRDTLLALAHLH-SQGLVHLDVKPANIFLGPRGRC 196

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 17/97 (17%)

Query: 15  EIQ-----KHPSDKLMKLLDHFQVTGINGTHVCTVTEIMA--ECLCNYMIRQKFQPAPL- 66
           E       KHP   +++LL+ +     +   +  V E M   + LC  ++++        
Sbjct: 76  EASICHMLKHPH--IVELLETYS----SDGMLYMVFEFMDGAD-LCFEIVKRADAGFVYS 128

Query: 67  -VVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFK 102
             VA   + QILE L + H  +N++H  +KP  +   
Sbjct: 129 EAVASHYMRQILEALRYCH-DNNIIHRDVKPHCVLLA 164

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 45.2 bits (107), Expect = 6e-06
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 62  QPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIM 109
           Q  P+  A   + +IL  L++LH    LV+  +KPE+I    + + ++
Sbjct: 177 QKLPVAEAIAYLLEILPALSYLH-SIGLVYNDLKPENIMLTEEQLKLI 223

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 44.7 bits (106), Expect = 6e-06
 Identities = 17/110 (15%), Positives = 38/110 (34%), Gaps = 15/110 (13%)

Query: 8   NLIKTLIEIQK---HPSDKLMKLLDHFQVTGINGTHVCTVTEIMAEC----LCNYMIRQK 60
              +   ++ +   HP+  +++L+ +             +           L N + R K
Sbjct: 71  EEAQREADMHRLFNHPN--ILRLVAYCLRERGAKHEAWLLLP---FFKRGTLWNEIERLK 125

Query: 61  FQPAPLVVAKI--IVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYI 108
            +   L   +I  ++  I  GL  +H      H  +KP +I    +   +
Sbjct: 126 DKGNFLTEDQILWLLLGICRGLEAIH-AKGYAHRDLKPTNILLGDEGQPV 174

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 44.6 bits (106), Expect = 6e-06
 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 9/81 (11%)

Query: 24  LMKLLDHFQVTG-----INGTHVCTVTEIMAECLCNYMIRQKFQPAPL---VVAKIIVNQ 75
            M+ +D                V    E+M   L  +  +   +   +   ++ KI V  
Sbjct: 59  SMRTVDCPFTVTFYGALFREGDVWICMELMDTSLDKFYKQVIDKGQTIPEDILGKIAV-S 117

Query: 76  ILEGLNHLHTKHNLVHTSIKP 96
           I++ L HLH+K +++H  +KP
Sbjct: 118 IVKALEHLHSKLSVIHRDVKP 138

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 10/82 (12%)

Query: 24  LMKLLDHFQVTG-----INGTHVCTVTEIMAECLCN-YMIRQKFQPAPL---VVAKIIVN 74
           +M+  D   +                 E+M+      Y          +   ++ KI + 
Sbjct: 74  VMRSSDCPYIVQFYGALFREGDCWICMELMSTSFDKFYKYVYSVLDDVIPEEILGKITL- 132

Query: 75  QILEGLNHLHTKHNLVHTSIKP 96
             ++ LNHL     ++H  IKP
Sbjct: 133 ATVKALNHLKENLKIIHRDIKP 154

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 9/89 (10%)

Query: 24  LMKLLDHFQVTG-----INGTHVCTVTEIMAECLCNYMIRQKFQPAPLV---VAKIIVNQ 75
              L  H  V           H+    E          I + ++          K ++ Q
Sbjct: 64  HAVLGQHSHVVRYFSAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQ 123

Query: 76  ILEGLNHLHTKHNLVHTSIKPESIFFKAD 104
           +  GL ++H   +LVH  IKP +IF    
Sbjct: 124 VGRGLRYIH-SMSLVHMDIKPSNIFISRT 151

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 14/101 (13%)

Query: 8   NLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAEC--LCNYMIRQKFQPAP 65
            ++  +    KHP+  +++  + F         +  V +   E   L   +  QK     
Sbjct: 75  AVLANM----KHPN--IVQYRESF----EENGSLYIVMD-YCEGGDLFKRINAQKGVLFQ 123

Query: 66  LVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHV 106
                    QI   L H+H    ++H  IK ++IF   D  
Sbjct: 124 EDQILDWFVQICLALKHVH-DRKILHRDIKSQNIFLTKDGT 163

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 16/94 (17%)

Query: 15  EIQ-----KHPSDKLMKLLDHFQVTGINGTHVCTVTEIMA--ECLCNYMIRQKFQPAPLV 67
           EIQ     +HP   L+ L D F+    +   +  + E M+  E L   +  +  + +   
Sbjct: 204 EIQTMSVLRHP--TLVNLHDAFE----DDNEMVMIYEFMSGGE-LFEKVADEHNKMSEDE 256

Query: 68  VAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFF 101
             + +  Q+ +GL H+H ++N VH  +KPE+I F
Sbjct: 257 AVEYM-RQVCKGLCHMH-ENNYVHLDLKPENIMF 288

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 42.2 bits (100), Expect = 4e-05
 Identities = 21/94 (22%), Positives = 46/94 (48%), Gaps = 10/94 (10%)

Query: 10  IKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMA--ECLCNYMIRQKFQPAPLV 67
           I  L   +  P  +++ L + ++    N + +  + E  A  E + +  + +  +     
Sbjct: 79  IAVLELAKSCP--RVINLHEVYE----NTSEIILILEYAAGGE-IFSLCLPELAEMVSEN 131

Query: 68  VAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFF 101
               ++ QILEG+ +LH ++N+VH  +KP++I  
Sbjct: 132 DVIRLIKQILEGVYYLH-QNNIVHLDLKPQNILL 164

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 16/94 (17%)

Query: 15  EIQ-----KHPSDKLMKLLDHFQVTGINGTHVCTVTEIMA--ECLCNYMIRQKFQPAPLV 67
           EI       HP  KL+ L D F+    +   +  + E ++  E L + +  + ++ +   
Sbjct: 98  EISIMNQLHHP--KLINLHDAFE----DKYEMVLILEFLSGGE-LFDRIAAEDYKMSEAE 150

Query: 68  VAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFF 101
           V   +  Q  EGL H+H +H++VH  IKPE+I  
Sbjct: 151 VINYM-RQACEGLKHMH-EHSIVHLDIKPENIMC 182

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 42.0 bits (98), Expect = 5e-05
 Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 63  PAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKAD-HVYIM 109
                    +  Q++  L  LH  + LVHT ++P  I       V++ 
Sbjct: 207 SLVHHARLQLTLQVIRLLASLH-HYGLVHTYLRPVDIVLDQRGGVFLT 253

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 41.9 bits (98), Expect = 6e-05
 Identities = 15/102 (14%), Positives = 35/102 (34%), Gaps = 11/102 (10%)

Query: 13  LIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYM-----IRQKFQPAPLV 67
           L++  +    K++++    +   +       +   M   L  +           +     
Sbjct: 151 LVKDPQKK--KMIRVRLDERDMWV--LSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHH 206

Query: 68  VAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKAD-HVYI 108
               +  Q++  L  LH  + LVHT ++P  I       V++
Sbjct: 207 ARLQLTLQVIRLLASLH-HYGLVHTYLRPVDIVLDQRGGVFL 247

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 41.6 bits (98), Expect = 7e-05
 Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 16/94 (17%)

Query: 15  EIQ-----KHPSDKLMKLLDHFQVTGINGTHVCTVTEIMA--ECLCNYMIRQKFQPAPLV 67
           EI       H    L++L D F+    +   +  V E +   E L + +I + +    L 
Sbjct: 136 EISVMNQLDHA--NLIQLYDAFE----SKNDIVLVMEYVDGGE-LFDRIIDESYNLTELD 188

Query: 68  VAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFF 101
               +  QI EG+ H+H +  ++H  +KPE+I  
Sbjct: 189 TILFM-KQICEGIRHMH-QMYILHLDLKPENILC 220

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 41.6 bits (98), Expect = 7e-05
 Identities = 16/90 (17%), Positives = 40/90 (44%), Gaps = 14/90 (15%)

Query: 23  KLMKLLDHFQVTGI-----------NGTHVCTVTEIMAECLCNYM--IRQKFQPAPLVVA 69
           ++M+ LDH  +  +           +  ++  V + + E +        +  Q  P++  
Sbjct: 99  QIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYV 158

Query: 70  KIIVNQILEGLNHLHTKHNLVHTSIKPESI 99
           K+ + Q+   L ++H+   + H  IKP+++
Sbjct: 159 KLYMYQLFRSLAYIHS-FGICHRDIKPQNL 187

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 22/96 (22%), Positives = 45/96 (46%), Gaps = 19/96 (19%)

Query: 15  EIQ-----KHPSDKLMKLLDHFQVTGINGTHVCTVTEIMA--ECLCNYMI-RQKFQPAPL 66
           E +     +HP+  +++L D  Q      +    V +++   E L   ++ R+ +  A  
Sbjct: 78  EARICRKLQHPN--IVRLHDSIQ----EESFHYLVFDLVTGGE-LFEDIVAREFYSEA-- 128

Query: 67  VVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFK 102
             A   + QILE + + H  + +VH ++KPE++   
Sbjct: 129 -DASHCIQQILESIAYCH-SNGIVHRNLKPENLLLA 162

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 41.4 bits (98), Expect = 8e-05
 Identities = 22/96 (22%), Positives = 45/96 (46%), Gaps = 19/96 (19%)

Query: 15  EIQ-----KHPSDKLMKLLDHFQVTGINGTHVCTVTEIMA--ECLCNYMI-RQKFQPAPL 66
           E +     +HP+  +++L D  Q      +    V +++   E L   ++ R+ +  A  
Sbjct: 55  EARICRKLQHPN--IVRLHDSIQ----EESFHYLVFDLVTGGE-LFEDIVAREFYSEA-- 105

Query: 67  VVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFK 102
             A   + QILE + + H  + +VH ++KPE++   
Sbjct: 106 -DASHCIQQILESIAYCH-SNGIVHRNLKPENLLLA 139

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 41.2 bits (97), Expect = 9e-05
 Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 52  LCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADH 105
           L + +  +          ++   QILE L+++H    ++H  +KP +IF     
Sbjct: 102 LYDLIHSENLNQQRDEYWRLFR-QILEALSYIH-SQGIIHRDLKPMNIFIDESR 153

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 41.1 bits (97), Expect = 9e-05
 Identities = 18/95 (18%), Positives = 41/95 (43%), Gaps = 6/95 (6%)

Query: 10  IKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMA--ECLCNYMIRQKFQPAPLV 67
           ++      + P   +++++D ++        +  V E +   E L + +  +  Q     
Sbjct: 61  VELHWRASQCPH--IVRIVDVYENLYAGRKCLLIVMECLDGGE-LFSRIQDRGDQAFTER 117

Query: 68  VAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFK 102
            A  I+  I E + +LH   N+ H  +KPE++ + 
Sbjct: 118 EASEIMKSIGEAIQYLH-SINIAHRDVKPENLLYT 151

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 18/95 (18%), Positives = 41/95 (43%), Gaps = 6/95 (6%)

Query: 10  IKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMA--ECLCNYMIRQKFQPAPLV 67
           ++      + P   +++++D ++        +  V E +   E L + +  +  Q     
Sbjct: 105 VELHWRASQCPH--IVRIVDVYENLYAGRKCLLIVMECLDGGE-LFSRIQDRGDQAFTER 161

Query: 68  VAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFK 102
            A  I+  I E + +LH   N+ H  +KPE++ + 
Sbjct: 162 EASEIMKSIGEAIQYLH-SINIAHRDVKPENLLYT 195

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 19/94 (20%), Positives = 41/94 (43%), Gaps = 16/94 (17%)

Query: 15  EIQ-----KHPSDKLMKLLDHFQVTGINGTHVCTVTEIMA--ECLCNYMIRQKFQPAPLV 67
           EI      +H    ++ L + F+    +   +  + E ++  + +   +    F+     
Sbjct: 51  EISILNIARHR--NILHLHESFE----SMEELVMIFEFISGLD-IFERINTSAFELNERE 103

Query: 68  VAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFF 101
           +   + +Q+ E L  LH  HN+ H  I+PE+I +
Sbjct: 104 IVSYV-HQVCEALQFLH-SHNIGHFDIRPENIIY 135

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 69  AKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKAD 104
              I+ QI   L++LH    + H  IKPE+  F  +
Sbjct: 170 ISNIMRQIFSALHYLH-NQGICHRDIKPENFLFSTN 204

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 13/102 (12%), Positives = 28/102 (27%), Gaps = 11/102 (10%)

Query: 5   YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAEC----LCNYMIRQK 60
           Y    +   ++         MK                 V E+ +        N      
Sbjct: 112 YIGTQLMERLKPSMQHM--FMKFYSAHL----FQNGSVLVGELYSYGTLLNAINLYKNTP 165

Query: 61  FQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFK 102
            +  P  +      ++L  +  +H    ++H  IKP++    
Sbjct: 166 EKVMPQGLVISFAMRMLYMIEQVH-DCEIIHGDIKPDNFILG 206

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 16/100 (16%)

Query: 10  IKTLIEIQK---HPSDKLMKLLDHFQVTGINGTHVCTVTEIMAE-------CLCNYMIRQ 59
            K  ++I     +     +           N   V  + E M              + + 
Sbjct: 90  FKNELQIITDIKNEY--CLTCEGIIT----NYDEVYIIYEYMENDSILKFDEYFFVLDKN 143

Query: 60  KFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESI 99
                P+ V K I+  +L   +++H + N+ H  +KP +I
Sbjct: 144 YTCFIPIQVIKCIIKSVLNSFSYIHNEKNICHRDVKPSNI 183

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 6/95 (6%)

Query: 10  IKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMA--ECLCNYMIRQKFQPAPLV 67
           +    +    P   ++ +LD ++        +  + E M   E L + +  +  Q     
Sbjct: 72  VDHHWQASGGPH--IVCILDVYENMHHGKRCLLIIMECMEGGE-LFSRIQERGDQAFTER 128

Query: 68  VAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFK 102
            A  I+  I   +  LH  HN+ H  +KPE++ + 
Sbjct: 129 EAAEIMRDIGTAIQFLH-SHNIAHRDVKPENLLYT 162

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 14/98 (14%)

Query: 10  IKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMA--ECLCNYMI-RQKFQPAPL 66
           +  L ++  HP+  +++L D ++      T    V ++M   E L +Y+  +        
Sbjct: 74  VDILRKVSGHPN--IIQLKDTYE----TNTFFFLVFDLMKKGE-LFDYLTEKVTLSEK-- 124

Query: 67  VVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKAD 104
              + I+  +LE +  LH K N+VH  +KPE+I    D
Sbjct: 125 -ETRKIMRALLEVICALH-KLNIVHRDLKPENILLDDD 160

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 14/90 (15%)

Query: 23  KLMKLLDHFQVTGI-----------NGTHVCTVTEIMAECLCNYM--IRQKFQPAPLVVA 69
           ++M+++ H  V  +           +   +  V E + E +        +  Q  P+++ 
Sbjct: 84  QIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNLVLEYVPETVYRASRHYAKLKQTMPMLLI 143

Query: 70  KIIVNQILEGLNHLHTKHNLVHTSIKPESI 99
           K+ + Q+L  L ++H+   + H  IKP+++
Sbjct: 144 KLYMYQLLRSLAYIHS-IGICHRDIKPQNL 172

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 39.5 bits (93), Expect = 3e-04
 Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 17/94 (18%)

Query: 15  EIQ-----KHPSDKLMKLLDHFQVTGINGTHVCTVTEIMA--ECLCNYMIRQKFQPAPLV 67
           E+       H    ++ L D ++    N T V  + E+++  E L +++ +++       
Sbjct: 65  EVSILRQVLHH--NVITLHDVYE----NRTDVVLILELVSGGE-LFDFLAQKESLSEE-- 115

Query: 68  VAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFF 101
            A   + QIL+G+N+LH    + H  +KPE+I  
Sbjct: 116 EATSFIKQILDGVNYLH-TKKIAHFDLKPENIML 148

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 19/96 (19%)

Query: 15  EIQ-----KHPSDKLMKLLDHFQVTGINGTHVCTVTEIMA--ECLCNYMI-RQKFQPAPL 66
           E +     KHP+  +++L D          H   + +++   E L   ++ R+ +  A  
Sbjct: 60  EARICRLLKHPN--IVRLHDSIS----EEGHHYLIFDLVTGGE-LFEDIVAREYYSEA-- 110

Query: 67  VVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFK 102
             A   + QILE + H H +  +VH ++KPE++   
Sbjct: 111 -DASHCIQQILEAVLHCH-QMGVVHRNLKPENLLLA 144

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 9/34 (26%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 69  AKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFK 102
            K+   Q+L  + +LH ++ ++H  +KPE++   
Sbjct: 241 CKLYFYQMLLAVQYLH-ENGIIHRDLKPENVLLS 273

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 22/98 (22%), Positives = 47/98 (47%), Gaps = 14/98 (14%)

Query: 10  IKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMA--ECLCNYMI-RQKFQPAPL 66
              L ++  HP   ++ L+D ++    + + +  V ++M   E L +Y+  +        
Sbjct: 150 THILRQVAGHPH--IITLIDSYE----SSSFMFLVFDLMRKGE-LFDYLTEKVALSEK-- 200

Query: 67  VVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKAD 104
              + I+  +LE ++ LH  +N+VH  +KPE+I    +
Sbjct: 201 -ETRSIMRSLLEAVSFLH-ANNIVHRDLKPENILLDDN 236

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 13/72 (18%), Positives = 32/72 (44%), Gaps = 4/72 (5%)

Query: 37  NGTHVCTVTEIMAEC--LCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSI 94
               +    E   +   L  ++ +++ +    V+A  +  QI +G++++H    L++  +
Sbjct: 91  KTKCLFIQME-FCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIH-SKKLINRDL 148

Query: 95  KPESIFFKADHV 106
           KP +IF      
Sbjct: 149 KPSNIFLVDTKQ 160

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 13/94 (13%)

Query: 23  KLMKLLDHFQVTG-----INGTHVCTVTEIMAEC--LCNYMIRQKFQPAPL---VVAKII 72
            L+K L+H  V       I    +  V E+ A+   L   +   K Q   +    V K  
Sbjct: 84  DLLKQLNHPNVIKYYASFIEDNELNIVLEL-ADAGDLSRMIKHFKKQKRLIPERTVWKYF 142

Query: 73  VNQILEGLNHLHTKHNLVHTSIKPESIFFKADHV 106
           V Q+   L H+H    ++H  IKP ++F  A  V
Sbjct: 143 V-QLCSALEHMH-SRRVMHRDIKPANVFITATGV 174

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 39.0 bits (91), Expect = 5e-04
 Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 12/92 (13%)

Query: 14  IEIQK---HPSDKLMKLLDHFQVTGINGTHVCTVTEIMA--ECLCNYMI-RQKFQPAPLV 67
            E+ K   H +  ++KL    + T     H   + E       L   +         P  
Sbjct: 58  FEVLKKLNHKN--IVKLFAIEEET--TTRHKVLIMEFCPCGS-LYTVLEEPSNAYGLPES 112

Query: 68  VAKIIVNQILEGLNHLHTKHNLVHTSIKPESI 99
              I++  ++ G+NHL  ++ +VH +IKP +I
Sbjct: 113 EFLIVLRDVVGGMNHLR-ENGIVHRNIKPGNI 143

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 69  AKIIVNQILEGLNHLHTKHNLVHTSIKPESIFF 101
           A   + QIL+G+N+LH    + H  +KPE+I  
Sbjct: 117 ATSFIKQILDGVNYLH-TKKIAHFDLKPENIML 148

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 38.8 bits (91), Expect = 7e-04
 Identities = 9/37 (24%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 69  AKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADH 105
            K+   Q+L  + +LH ++ ++H  +KPE++   +  
Sbjct: 116 CKLYFYQMLLAVQYLH-ENGIIHRDLKPENVLLSSQE 151

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 38.7 bits (90), Expect = 7e-04
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 58  RQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHV 106
           R   +     V   I  QI E +  LH    L+H  +KP +IFF  D V
Sbjct: 155 RCSLEDREHGVCLHIFIQIAEAVEFLH-SKGLMHRDLKPSNIFFTMDDV 202

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 38.4 bits (90), Expect = 7e-04
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 4/48 (8%)

Query: 63  PAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFF-KADHVYIM 109
             P  VA  IV QI   L+  H      H  +KPE+I     D  Y++
Sbjct: 132 APPRAVA--IVRQIGSALDAAH-AAGATHRDVKPENILVSADDFAYLV 176

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 38.3 bits (90), Expect = 7e-04
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 69  AKIIVNQILEGLNHLHTKHNLVHTSIKPESIFF 101
           A   + QIL+G+++LH    + H  +KPE+I  
Sbjct: 110 ATQFLKQILDGVHYLH-SKRIAHFDLKPENIML 141

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 38.5 bits (90), Expect = 8e-04
 Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 1/34 (2%)

Query: 69  AKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFK 102
           A  I+ QIL G+ +LH KHN+VH  IKPE+I  +
Sbjct: 148 AANIMKQILSGICYLH-KHNIVHRDIKPENILLE 180

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 69  AKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFK 102
           A   + QIL G+ +LH    + H  +KPE+I   
Sbjct: 116 ATEFLKQILNGVYYLH-SLQIAHFDLKPENIMLL 148

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 38.5 bits (90), Expect = 9e-04
 Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 1/34 (2%)

Query: 69  AKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFK 102
           A  I+ Q+L G+ ++H K+ +VH  +KPE++  +
Sbjct: 128 AARIIRQVLSGITYMH-KNKIVHRDLKPENLLLE 160

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	202
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.98
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	99.97
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	99.97
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.97
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.97
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.97
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.97
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.97
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	99.97
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	99.97
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.97
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.97
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.97
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.97
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.97
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.97
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.97
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.97
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.97
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.97
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.97
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.97
3niz_A	311	Rhodanese family protein; structural genomics, str	99.97
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.97
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.97
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.97
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.97
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.97
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.97
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.97
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.97
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.97
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.97
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.97
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.97
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.97
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.97
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.97
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.97
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.97
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.97
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.97
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.97
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.97
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.97
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.97
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.97
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.97
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.97
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.97
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.97
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.97
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.97
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.96
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.96
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.96
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.96
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.96
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.96
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.96
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.96
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.96
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.96
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.96
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.96
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.96
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.96
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.96
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.96
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.96
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.96
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.96
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.96
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.96
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.96
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.96
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.96
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.96
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.96
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.96
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.96
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.96
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.96
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.96
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.96
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.96
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.96
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.96
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.96
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.96
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.96
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.96
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.96
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.96
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.96
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.96
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.96
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.96
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.96
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.96
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.96
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.96
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.96
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.96
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.96
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.96
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.96
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.96
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.96
3bhy_A	283	Death-associated protein kinase 3; death associate	99.96
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.96
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.96
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.96
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.96
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.96
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.96
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.96
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.96
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.96
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.96
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.96
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.96
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.96
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.96
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.96
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.96
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.96
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.96
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.96
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.96
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.96
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.96
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.96
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.96
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.96
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.96
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.96
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.96
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.96
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.96
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.96
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.96
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.96
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.96
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.96
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.96
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.96
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.96
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.96
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.95
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.95
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.95
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.95
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.95
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.95
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.95
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.95
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.95
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.95
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.95
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.95
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.95
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.95
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.95
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.95
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.95
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.95
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.95
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.95
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.95
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.95
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.95
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.95
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.95
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.95
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.95
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.95
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.95
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.95
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.95
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.95
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.95
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.95
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.95
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.95
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.95
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.95
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.95
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.95
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.95
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.95
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.95
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.95
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.95
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.95
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.95
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.95
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.95
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.95
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.95
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.95
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.95
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.95
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.95
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.95
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.95
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.95
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.95
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.95
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.95
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.95
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.95
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.94
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.94
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.94
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.94
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.94
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.94
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.94
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.94
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.94
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.94
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.94
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.94
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.94
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.94
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.93
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.93
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.93
3uqc_A	286	Probable conserved transmembrane protein; structur	99.9
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.9
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.89
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.74
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.61
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.33
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	99.06
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	98.8
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	98.76
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	98.34
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	98.22
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	98.12
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	98.09
3ats_A	357	Putative uncharacterized protein; hypothetical pro	97.58
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	97.44
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	96.43
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	96.34
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	96.18
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	95.04
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	94.33
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	93.77
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	93.73
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	93.04
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	92.73
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	92.27
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	91.79
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	91.63
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	91.15
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	90.4
3g15_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	89.13
3mes_A	424	Choline kinase; malaria, structural genomics, stru	85.65
2yle_A	229	Protein spire homolog 1; actin-binding protein, ac	81.63
4ann_A	215	ESSB; membrane protein, membrane secretion, ESS ty	81.58

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=2.8e-40  Score=256.40  Aligned_cols=142  Identities=19%  Similarity=0.245  Sum_probs=123.8

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +...+|+++|+++ +||  ||++++++|+    +...+|+||||+ ||+|.+++.+.+  ++++..++.++.|++.||.|
T Consensus        77 ~~~~~E~~il~~l-~Hp--nIv~l~~~~~----~~~~~yivmEy~~gG~L~~~i~~~~--~l~e~~~~~~~~qi~~al~y  147 (311)
T 4aw0_A           77 PYVTRERDVMSRL-DHP--FFVKLYFTFQ----DDEKLYFGLSYAKNGELLKYIRKIG--SFDETCTRFYTAEIVSALEY  147 (311)
T ss_dssp             HHHHHHHHHHTTC-CCT--TBCCEEEEEE----CSSEEEEEECCCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CCCeEEEEEE----eCCEEEEEEecCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHH
Confidence            3467899998888 555  9999999999    677999999999 999999998874  59999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC---CCCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD---QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      ||++ ||+||||||+|||++.++.  +||+|||+|+.......   ....+||+.|+|||++...      .|+.++|+|
T Consensus       148 lH~~-~IiHRDlKPeNILl~~~g~--vKl~DFGla~~~~~~~~~~~~~~~~GTp~YmAPEvl~~~------~y~~~~DiW  218 (311)
T 4aw0_A          148 LHGK-GIIHRDLKPENILLNEDMH--IQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEK------SACKSSDLW  218 (311)
T ss_dssp             HHHT-TEECSCCSGGGEEECTTSC--EEECCCTTCEECCTTTTCCCBCCCCSCGGGCCHHHHHHS------CBCHHHHHH
T ss_pred             HHHC-CCccCCCCHHHeEEcCCCC--EEEEEcCCceecCCCCCcccccCcccCcccCCHHHHcCC------CCCcHHHHH
Confidence            9996 9999999999999998887  99999999998753322   2246899999999999854      388899999


Q ss_pred             hHHH
Q psy320          160 SIKM  163 (202)
Q Consensus       160 sl~~  163 (202)
                      |+|+
T Consensus       219 SlGv  222 (311)
T 4aw0_A          219 ALGC  222 (311)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9976

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=1e-39  Score=256.68  Aligned_cols=155  Identities=15%  Similarity=0.232  Sum_probs=131.7

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +...+|+++|+.+ +||  |||+++++|.    ++..+|+||||+ +|+|.+++.+.   ++++..++.++.|++.||.|
T Consensus       116 ~~~~~Ei~il~~l-~Hp--nIV~l~~~~~----~~~~~~ivmEy~~gg~L~~~l~~~---~l~e~~~~~~~~qi~~aL~y  185 (346)
T 4fih_A          116 ELLFNEVVIMRDY-QHE--NVVEMYNSYL----VGDELWVVMEFLEGGALTDIVTHT---RMNEEQIAAVCLAVLQALSV  185 (346)
T ss_dssp             GGGHHHHHHHHHC-CCT--TBCCEEEEEE----ETTEEEEEECCCTTEEHHHHHHHS---CCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CCCcEEEEEE----ECCEEEEEEeCCCCCcHHHHHHcC---CCCHHHHHHHHHHHHHHHHH
Confidence            4567899999999 565  9999999999    466999999999 99999998763   49999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC-CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD-QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~-~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      ||++ ||+||||||+|||++.++.  +||+|||+|+....... ....+||+.|+|||++..      ..|+.++||||+
T Consensus       186 lH~~-~IiHRDlKp~NILl~~~g~--vKl~DFGla~~~~~~~~~~~~~~GTp~YmAPEvl~~------~~y~~~~DiWSl  256 (346)
T 4fih_A          186 LHAQ-GVIHRDIKSDSILLTHDGR--VKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISR------LPYGPEVDIWSL  256 (346)
T ss_dssp             HHHT-TEECCCCSGGGEEECTTCC--EEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTT------CCBCTHHHHHHH
T ss_pred             HHHC-CcccccCCHHHEEECCCCC--EEEecCcCceecCCCCCcccccccCcCcCCHHHHCC------CCCCcHHHHHHH
Confidence            9996 9999999999999998887  99999999998754433 335789999999999873      448899999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCC
Q psy320          162 KMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      |+.      +..++.|.+||..
T Consensus       257 Gvi------lyeml~G~~PF~~  272 (346)
T 4fih_A          257 GIM------VIEMVDGEPPYFN  272 (346)
T ss_dssp             HHH------HHHHHHSSCTTTT
T ss_pred             HHH------HHHHHHCCCCCCC
Confidence            873      3355557777753

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=4e-40  Score=259.40  Aligned_cols=157  Identities=18%  Similarity=0.179  Sum_probs=130.7

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +.+.+|+++++++ +||  |||+++++|.    +...+|+||||+ ||+|.+++.......+++..++.++.|++.||.|
T Consensus        68 ~~~~~E~~il~~l-~Hp--nIV~~~~~~~----~~~~~yiVmEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~y  140 (350)
T 4b9d_A           68 EESRREVAVLANM-KHP--NIVQYRESFE----ENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKH  140 (350)
T ss_dssp             HHHHHHHHHHHHC-CCT--TBCCEEEEEE----ETTEEEEEEECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHC-CCC--CCCcEEEEEE----ECCEEEEEEeCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence            3567899999999 565  9999999999    466999999999 9999999987665668999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC-CCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ-QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~-~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      ||++ ||+||||||+|||++.++.  +||+|||+|+........ ...+||+.|+|||++..      ..|+.++||||+
T Consensus       141 lH~~-~IiHRDlKp~NILl~~~g~--vKl~DFGla~~~~~~~~~~~~~~GT~~YmAPE~l~~------~~y~~~~DiwSl  211 (350)
T 4b9d_A          141 VHDR-KILHRDIKSQNIFLTKDGT--VQLGDFGIARVLNSTVELARACIGTPYYLSPEICEN------KPYNNKSDIWAL  211 (350)
T ss_dssp             HHHT-TCEETTCCGGGEEECTTCC--EEECSTTEESCCCHHHHHHHHHHSCCTTCCHHHHTT------CCCCHHHHHHHH
T ss_pred             HHHC-CeeeccCCHHHEEECCCCC--EEEcccccceeecCCcccccccCCCccccCHHHHCC------CCCCcHHHHHHH
Confidence            9996 9999999999999998887  999999999887543221 23579999999999984      448889999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCC
Q psy320          162 KMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      |+..+      .++.|.++|.
T Consensus       212 Gvily------emltG~~PF~  226 (350)
T 4b9d_A          212 GCVLY------ELCTLKHAFE  226 (350)
T ss_dssp             HHHHH------HHHHSSCSCC
T ss_pred             HHHHH------HHHHCCCCCC
Confidence            76322      4444555554

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=2.9e-39  Score=247.34  Aligned_cols=155  Identities=18%  Similarity=0.265  Sum_probs=120.7

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ....+|+++++++ +||  ||++++++|.    +....|+||||++|+|.+++.+.  +++++..++.++.|++.||.||
T Consensus        58 ~~~~~Ei~il~~l-~Hp--nIv~~~~~~~----~~~~~~ivmEy~~g~L~~~l~~~--~~l~e~~~~~~~~qi~~al~yl  128 (275)
T 3hyh_A           58 GRIEREISYLRLL-RHP--HIIKLYDVIK----SKDEIIMVIEYAGNELFDYIVQR--DKMSEQEARRFFQQIISAVEYC  128 (275)
T ss_dssp             HHHHHHHHHHHHC-CCT--TBCCEEEEEE----CSSEEEEEEECCCEEHHHHHHHS--CSCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHC-CCC--CCCeEEEEEE----ECCEEEEEEeCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHH
Confidence            3467899999999 565  9999999998    67799999999999999999876  4599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCC-CCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRL-DPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~-~~~~Diwsl~  162 (202)
                      |++ ||+||||||+|||++.++.  +||+|||+|+...........+||+.|+|||++..      ..| +.++|+||+|
T Consensus       129 H~~-~IiHRDiKP~NILl~~~~~--vkl~DFGla~~~~~~~~~~~~~GT~~Y~APE~~~~------~~y~~~~~DiwSlG  199 (275)
T 3hyh_A          129 HRH-KIVHRDLKPENLLLDEHLN--VKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVISG------KLYAGPEVDVWSCG  199 (275)
T ss_dssp             HHT-TCCCCCCCTTTEEECTTCC--EEECCSSCC---------------CTTSCHHHHSS------SSCCCTHHHHHHHH
T ss_pred             HHC-CcccccCChHHeEECCCCC--EEEeecCCCeecCCCCccCCeeECcccCChhhhcC------CCCCCChhhhHHHH
Confidence            996 9999999999999998877  99999999988765444456789999999999983      335 4689999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +.      +..++.|.+||.
T Consensus       200 vi------ly~lltg~~PF~  213 (275)
T 3hyh_A          200 VI------LYVMLCRRLPFD  213 (275)
T ss_dssp             HH------HHHHHHSSCSSC
T ss_pred             HH------HHHHHHCCCCCC
Confidence            63      224555666664

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=5.1e-39  Score=258.49  Aligned_cols=154  Identities=16%  Similarity=0.236  Sum_probs=131.1

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +...+|+++|+.+ +||  |||+++++|.    ++..+|+||||| ||+|.+++...   ++++..++.++.|++.||.|
T Consensus       193 ~~~~~Ei~il~~l-~Hp--nIV~l~~~~~----~~~~~~iVmEy~~gG~L~~~i~~~---~l~e~~~~~~~~qil~aL~y  262 (423)
T 4fie_A          193 ELLFNEVVIMRDY-QHE--NVVEMYNSYL----VGDELWVVMEFLEGGALTDIVTHT---RMNEEQIAAVCLAVLQALSV  262 (423)
T ss_dssp             GGHHHHHHHHHHC-CCT--TBCCEEEEEE----ETTEEEEEEECCTTEEHHHHHHHS---CCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CCCceEEEEE----ECCEEEEEEeCCCCCcHHHHHhcc---CCCHHHHHHHHHHHHHHHHH
Confidence            4567899999999 565  9999999999    466999999999 99999998753   49999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC-CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD-QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~-~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      ||++ ||+||||||+|||++.++.  +||+|||+|+....... ....+||+.|+|||++..      ..|+.++||||+
T Consensus       263 lH~~-~IiHRDiKp~NILl~~~g~--vKl~DFGla~~~~~~~~~~~~~~GTp~YmAPEvl~~------~~y~~~~DiWSl  333 (423)
T 4fie_A          263 LHAQ-GVIHRDIKSDSILLTHDGR--VKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISR------LPYGPEVDIWSL  333 (423)
T ss_dssp             HHHT-TEECCCCSTTTEEECTTCC--EEECCCTTCEECCSSCCCBCCCEECTTTCCHHHHTT------CCBCTHHHHHHH
T ss_pred             HHHC-CeecccCCHHHEEEcCCCC--EEEecCccceECCCCCccccccccCcCcCCHHHHCC------CCCCcHHHHHHH
Confidence            9996 9999999999999998887  99999999998754433 235689999999999974      448999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCC
Q psy320          162 KMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      |+.      +..++.|.++|.
T Consensus       334 Gvi------lyeml~G~~PF~  348 (423)
T 4fie_A          334 GIM------VIEMVDGEPPYF  348 (423)
T ss_dssp             HHH------HHHHHHSSCTTT
T ss_pred             HHH------HHHHHHCCCCCC
Confidence            873      225555777764

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=1.1e-38  Score=245.90  Aligned_cols=156  Identities=22%  Similarity=0.322  Sum_probs=129.3

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+++++++ +||  |||+++++|.........+|+||||+ +|+|.+++.+..  .+++..++.++.|++.||.||
T Consensus        71 ~~~~E~~il~~l-~Hp--nIV~~~~~~~~~~~~~~~~~lvmEy~~gg~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~yl  145 (290)
T 3fpq_A           71 RFKEEAEMLKGL-QHP--NIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRFK--VMKIKVLRSWCRQILKGLQFL  145 (290)
T ss_dssp             HHHHHHHHHHTC-CCT--TBCCEEEEEEEEETTEEEEEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCC--CCCcEEEEEeeccCCCcEEEEEEeCCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHH
Confidence            467899999988 555  99999999986544567899999999 999999998764  599999999999999999999


Q ss_pred             HhhCC--ccccCCCCCceeeec-CCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           84 HTKHN--LVHTSIKPESIFFKA-DHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        84 h~~~~--ivH~dl~p~nil~~~-~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      |++ |  |+||||||+|||++. ++.  +||+|||+|+.... ......+||+.|+|||++.       ..|+.++||||
T Consensus       146 H~~-~~~IiHRDlKp~NILl~~~~g~--vKl~DFGla~~~~~-~~~~~~~GTp~YmAPE~~~-------~~y~~~~DiwS  214 (290)
T 3fpq_A          146 HTR-TPPIIHRDLKCDNIFITGPTGS--VKIGDLGLATLKRA-SFAKAVIGTPEFMAPEMYE-------EKYDESVDVYA  214 (290)
T ss_dssp             HTS-SSCCCCCCCCGGGEEESSTTSC--EEECCTTGGGGCCT-TSBEESCSSCCCCCGGGGG-------TCCCTHHHHHH
T ss_pred             HHC-CCCEEecccChhheeEECCCCC--EEEEeCcCCEeCCC-CccCCcccCccccCHHHcC-------CCCCcHHHHHH
Confidence            996 8  999999999999975 555  99999999986432 2233568999999999875       23889999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCC
Q psy320          161 IKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       161 l~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +|+.      +..++.|.+||.
T Consensus       215 lGvi------lyelltg~~Pf~  230 (290)
T 3fpq_A          215 FGMC------MLEMATSEYPYS  230 (290)
T ss_dssp             HHHH------HHHHHHSSCTTT
T ss_pred             HHHH------HHHHHHCCCCCC
Confidence            9873      335556888875

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=1.8e-39  Score=251.63  Aligned_cols=154  Identities=16%  Similarity=0.203  Sum_probs=121.9

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++++ +||  ||++++++|.    +...+|+||||+ ||+|.+++.+.+  ++++..++.++.|++.||.||
T Consensus        72 ~~~~E~~il~~l-~Hp--nIv~l~~~~~----~~~~~~ivmEy~~gg~L~~~l~~~~--~l~e~~~~~~~~qi~~aL~yl  142 (304)
T 3ubd_A           72 RTKMERDILVEV-NHP--FIVKLHYAFQ----TEGKLYLILDFLRGGDLFTRLSKEV--MFTEEDVKFYLAELALALDHL  142 (304)
T ss_dssp             ------CCCCCC-CCT--TEECEEEEEE----ETTEEEEEECCCTTCEEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHC-CCC--CCCeEEEEEE----ECCEEEEEEEcCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHH
Confidence            345688777777 455  9999999999    466999999999 999999998874  599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |++ ||+||||||+|||++.++.  +||+|||+|+...... .....+||+.|+|||++..      ..|+.++|+||+|
T Consensus       143 H~~-~IiHRDlKp~NILl~~~g~--vKl~DFGla~~~~~~~~~~~~~~GT~~YmAPE~~~~------~~y~~~~DiwSlG  213 (304)
T 3ubd_A          143 HSL-GIIYRDLKPENILLDEEGH--IKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNR------RGHTQSADWWSFG  213 (304)
T ss_dssp             HHT-TCCCSSCCGGGEEECTTSC--EEEESSEEEEC-----CCCCSCCCCGGGCCHHHHHT------SCCCTHHHHHHHH
T ss_pred             HHC-CCcCCCCCHHHeEEcCCCC--EEecccccceeccCCCccccccccCcccCCHHHhcc------CCCCCCCcccchH
Confidence            996 9999999999999998887  9999999998764433 2335689999999999984      4488999999997


Q ss_pred             HHHHHHHHHHHHHhcCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +..+      .++.|.+||.
T Consensus       214 vily------emltG~~PF~  227 (304)
T 3ubd_A          214 VLMF------EMLTGTLPFQ  227 (304)
T ss_dssp             HHHH------HHHHSSCSSC
T ss_pred             HHHH------HHHhCCCCCC
Confidence            6322      4444555554

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=7.5e-39  Score=251.05  Aligned_cols=155  Identities=18%  Similarity=0.205  Sum_probs=128.1

Q ss_pred             HHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            7 TNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         7 ~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      .+|+++++.+ +||  |||+++++|.    ++..+|+||||+ ||+|.+++.+.+  ++++..++.++.|++.||.|||+
T Consensus        98 ~~E~~il~~l-~Hp--nIV~l~~~~~----~~~~~~ivmEy~~gg~L~~~l~~~~--~l~e~~~~~~~~qi~~aL~ylH~  168 (336)
T 4g3f_A           98 VEELVACAGL-SSP--RIVPLYGAVR----EGPWVNIFMELLEGGSLGQLIKQMG--CLPEDRALYYLGQALEGLEYLHT  168 (336)
T ss_dssp             THHHHTTTTC-CCT--TBCCEEEEEE----ETTEEEEEECCCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhC-CCC--CCCcEEEEEE----ECCEEEEEEeccCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence            4688888888 455  9999999999    466999999999 999999998774  59999999999999999999999


Q ss_pred             hCCccccCCCCCceeeecCCcceeEEeecccccccccccCC------CCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           86 KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ------QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~------~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      + ||+||||||+|||++.++. .+||+|||+|+.....+..      ...+||+.|+|||++..      ..|+.++|||
T Consensus       169 ~-~IiHRDlKp~NILl~~~g~-~vKl~DFGla~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~------~~y~~~~Diw  240 (336)
T 4g3f_A          169 R-RILHGDVKADNVLLSSDGS-RAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMG------KPCDAKVDIW  240 (336)
T ss_dssp             T-TEECSCCCGGGEEECTTSC-CEEECCCTTCEEC------------CCCCCCGGGCCHHHHTT------CCCCTHHHHH
T ss_pred             C-CceecccCHHHEEEeCCCC-EEEEeeCCCCeEccCCCcccceecCCccccCccccCHHHHCC------CCCCcHHHHH
Confidence            6 9999999999999998762 3999999999977543221      13479999999999984      4488999999


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCCCC
Q psy320          160 SIKMYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       160 sl~~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      |+|+.      +..++.|.+||...
T Consensus       241 SlGvi------lyemltG~~Pf~~~  259 (336)
T 4g3f_A          241 SSCCM------MLHMLNGCHPWTQY  259 (336)
T ss_dssp             HHHHH------HHHHHHSSCSSTTT
T ss_pred             HHHHH------HHHHHHCcCCCCCC
Confidence            99873      33666688888643

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=2.6e-38  Score=245.55  Aligned_cols=158  Identities=15%  Similarity=0.190  Sum_probs=123.4

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +.+.+|+++++++ +||  |||++++++.     ...+|+||||+ +|||.+++.... +++++..+..++.|++.||.|
T Consensus        77 ~~f~~E~~il~~l-~Hp--NIV~l~g~~~-----~~~~~iVmEy~~gGsL~~~l~~~~-~~l~~~~~~~i~~qia~gL~y  147 (307)
T 3omv_A           77 QAFRNEVAVLRKT-RHV--NILLFMGYMT-----KDNLAIVTQWCEGSSLYKHLHVQE-TKFQMFQLIDIARQTAQGMDY  147 (307)
T ss_dssp             HHHHHHHHHHTTC-CCT--TBCCEEEEEC-----SSSCEEEEECCSSCBHHHHHHTSC-CCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CEeeEEEEEE-----CCeEEEEEEcCCCCCHHHHHhhcC-CCCCHHHHHHHHHHHHHHHHH
Confidence            3467889888888 455  9999999875     23579999999 999999997653 469999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc---CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH---DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~---~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      ||++ +|+||||||+|||++.++.  +||+|||+|+......   .....+||+.|+|||++....   ..+|+.++|||
T Consensus       148 LH~~-~IiHRDlKp~NILl~~~~~--~Ki~DFGla~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~---~~~y~~ksDVw  221 (307)
T 3omv_A          148 LHAK-NIIHRDMKSNNIFLHEGLT--VKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQD---NNPFSFQSDVY  221 (307)
T ss_dssp             HHHT-TCBCSCCCSSSEEEETTEE--EEECCCSSCBC------------CCCCTTSCCHHHHHCCS---SCCCCHHHHHH
T ss_pred             HHHC-CccCCccCHHHEEECCCCc--EEEeeccCceecccCCcceeecccccCCCccCHHHhhccC---CCCCCcHHHhH
Confidence            9996 9999999999999998876  9999999998764322   122458999999999997432   34578899999


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCC
Q psy320          160 SIKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       160 sl~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      |+|+..+      .+..|.+||.
T Consensus       222 S~Gvvl~------Elltg~~Pf~  238 (307)
T 3omv_A          222 SYGIVLY------ELMTGELPYS  238 (307)
T ss_dssp             HHHHHHH------HHHHSSCTTT
T ss_pred             hHHHHHH------HHHHCCCCCC
Confidence            9976322      3334555553

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=3.6e-38  Score=244.41  Aligned_cols=144  Identities=13%  Similarity=0.105  Sum_probs=122.1

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC-----------CCCCCHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK-----------FQPAPLVVAKI   71 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~-----------~~~~~~~~~~~   71 (202)
                      +.+.+|+++++++ +||  |||+++++|.    ++...|+||||+ +|||.+++....           ...+++..+..
T Consensus        60 ~~f~~E~~il~~l-~Hp--nIV~l~g~~~----~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~  132 (299)
T 4asz_A           60 KDFHREAELLTNL-QHE--HIVKFYGVCV----EGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLH  132 (299)
T ss_dssp             HHHHHHHHHHTTC-CCT--TBCCEEEEEC----SSSSEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CCccEEEEEe----eCCEEEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHH
Confidence            3467899998888 455  9999999998    567899999999 999999997642           34699999999


Q ss_pred             HHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC---CCCCCCccchhhHHHHhhhhcc
Q psy320           72 IVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ---QSSSKTKSKIFCEILEQCRLNQ  148 (202)
Q Consensus        72 ~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~---~~~~~~~~~~ape~~~~~~~~~  148 (202)
                      ++.|++.||.|||++ +|+||||||+|||++.++.  +||+|||+|+........   ....+|+.|+|||.+...    
T Consensus       133 i~~qia~gl~yLH~~-~iiHRDlKp~NILl~~~~~--~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~----  205 (299)
T 4asz_A          133 IAQQIAAGMVYLASQ-HFVHRDLATRNCLVGENLL--VKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYR----  205 (299)
T ss_dssp             HHHHHHHHHHHHHHT-TCCCSCCSGGGEEECGGGC--EEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHC----
T ss_pred             HHHHHHHHHHHHHhC-CcccCccCHhhEEECCCCc--EEECCcccceecCCCCceeecCceecChhhcCHHHHcCC----
Confidence            999999999999996 9999999999999998876  999999999876433221   234689999999999844    


Q ss_pred             CCCCCCCcchhhHHH
Q psy320          149 DFRLDPRVDPTSIKM  163 (202)
Q Consensus       149 ~~~~~~~~Diwsl~~  163 (202)
                        .|+.++|+||+|+
T Consensus       206 --~~~~k~DVwS~Gv  218 (299)
T 4asz_A          206 --KFTTESDVWSLGV  218 (299)
T ss_dssp             --CCCHHHHHHHHHH
T ss_pred             --CCCchhhHHHHHH
Confidence              4889999999975

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=2.3e-37  Score=240.76  Aligned_cols=145  Identities=11%  Similarity=0.078  Sum_probs=123.0

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC--------------CCCCCHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK--------------FQPAPLVV   68 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~--------------~~~~~~~~   68 (202)
                      +.+.+|+.+++++ +||  |||+++|+|.    +....|+||||+ +|||.+++....              ...+++..
T Consensus        74 ~~f~~E~~il~~l-~Hp--NIV~l~g~~~----~~~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~  146 (308)
T 4gt4_A           74 EEFRHEAMLRARL-QHP--NVVCLLGVVT----KDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPD  146 (308)
T ss_dssp             HHHHHHHHHHHHC-CCT--TBCCEEEEEC----SSSSCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CCCCcceEEE----ECCEEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHH
Confidence            4577899999999 555  9999999998    566899999999 999999996532              23589999


Q ss_pred             HHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC---CCCCCCCccchhhHHHHhhh
Q psy320           69 AKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD---QQSSSKTKSKIFCEILEQCR  145 (202)
Q Consensus        69 ~~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~ape~~~~~~  145 (202)
                      +..++.|++.||.|||++ +|+||||||+|||++.++.  +||+|||+|+.......   .....+|+.|+|||.+....
T Consensus       147 ~~~i~~qia~gl~yLH~~-~iiHRDLK~~NILl~~~~~--~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~  223 (308)
T 4gt4_A          147 FVHLVAQIAAGMEYLSSH-HVVHKDLATRNVLVYDKLN--VKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGK  223 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEECGGGC--EEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHhC-CCCCCCccccceEECCCCC--EEECCcccceeccCCCceeEecccccCCcccCHHHHhCCC
Confidence            999999999999999996 9999999999999998876  99999999987654322   22457899999999998544


Q ss_pred             hccCCCCCCCcchhhHHHH
Q psy320          146 LNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus       146 ~~~~~~~~~~~Diwsl~~~  164 (202)
                            |+.++||||+|+.
T Consensus       224 ------~s~ksDVwSfGvv  236 (308)
T 4gt4_A          224 ------FSIDSDIWSYGVV  236 (308)
T ss_dssp             ------CCHHHHHHHHHHH
T ss_pred             ------CCccchhhhHHHH
Confidence                  8889999999753

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=2.9e-37  Score=242.31  Aligned_cols=144  Identities=13%  Similarity=0.098  Sum_probs=115.6

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC-------------CCCCCHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK-------------FQPAPLVVA   69 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~-------------~~~~~~~~~   69 (202)
                      +.+.+|+++++++ +||  |||+++++|.    ++...|+||||+ +|+|.+++....             .+++++..+
T Consensus        88 ~~f~~E~~il~~l-~Hp--nIV~l~g~~~----~~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~  160 (329)
T 4aoj_A           88 QDFQREAELLTML-QHQ--HIVRFFGVCT----EGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQL  160 (329)
T ss_dssp             HHHHHHHHHHTTC-CCT--TBCCEEEEEC----SSSSEEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CCCcEEEEEE----ECCEEEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHH
Confidence            3567899999888 555  9999999998    567899999999 999999997642             245999999


Q ss_pred             HHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC---CCCCCCccchhhHHHHhhhh
Q psy320           70 KIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ---QSSSKTKSKIFCEILEQCRL  146 (202)
Q Consensus        70 ~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~---~~~~~~~~~~ape~~~~~~~  146 (202)
                      ..++.|++.||.|||++ +|+||||||+|||++.++.  +||+|||+|+........   ....+|+.|+|||++..   
T Consensus       161 ~~i~~qia~gl~yLH~~-~iiHRDLKp~NILl~~~~~--~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~---  234 (329)
T 4aoj_A          161 LAVASQVAAGMVYLAGL-HFVHRDLATRNCLVGQGLV--VKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILY---  234 (329)
T ss_dssp             HHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEEETTTE--EEECCCC----------------CCCCGGGCCHHHHTT---
T ss_pred             HHHHHHHHHHHHHHhcC-CeecccccHhhEEECCCCc--EEEcccccceeccCCCcceecCcccccccccChhhhcC---
Confidence            99999999999999996 9999999999999998876  999999999876433221   23578999999999984   


Q ss_pred             ccCCCCCCCcchhhHHH
Q psy320          147 NQDFRLDPRVDPTSIKM  163 (202)
Q Consensus       147 ~~~~~~~~~~Diwsl~~  163 (202)
                         ..|+.++|+||+|+
T Consensus       235 ---~~~~~~sDvwS~Gv  248 (329)
T 4aoj_A          235 ---RKFTTESDVWSFGV  248 (329)
T ss_dssp             ---CCCCHHHHHHHHHH
T ss_pred             ---CCCCccccccchHH
Confidence               44888999999975

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=4.5e-37  Score=238.42  Aligned_cols=148  Identities=21%  Similarity=0.295  Sum_probs=113.9

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecC--------CceEEEEEEccc-cccHHHHHHHcCC-CCCCHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGI--------NGTHVCTVTEIM-AECLCNYMIRQKF-QPAPLVVAKIIV   73 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~--------~~~~~~lv~e~~-~~sL~~~~~~~~~-~~~~~~~~~~~~   73 (202)
                      +.+.+|+++++++ +||  |||+++++|...+.        ...++|+||||+ +++|.+++..... ...+...++.++
T Consensus        48 ~~~~~E~~il~~l-~Hp--nIV~~~~~~~~~~~~~~~~~~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~  124 (299)
T 4g31_A           48 EKVMREVKALAKL-EHP--GIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIF  124 (299)
T ss_dssp             HHHHHHHHHHTTC-CCT--TBCCEEEEEEEEC----------CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CCCeEEEEEEecCccccccccCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHH
Confidence            3456789888888 555  99999999986432        234689999999 9999999976542 224567789999


Q ss_pred             HHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC-------------CCCCCCccchhhHH
Q psy320           74 NQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ-------------QSSSKTKSKIFCEI  140 (202)
Q Consensus        74 ~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~-------------~~~~~~~~~~ape~  140 (202)
                      .|++.||.|||++ ||+||||||+|||++.++.  +||+|||+|+........             ...+||+.|+|||+
T Consensus       125 ~qi~~al~ylH~~-~IiHRDlKp~NILl~~~~~--vKl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~  201 (299)
T 4g31_A          125 LQIAEAVEFLHSK-GLMHRDLKPSNIFFTMDDV--VKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQ  201 (299)
T ss_dssp             HHHHHHHHHHHHT-TCCCCCCCGGGEEECTTCC--EEECCCCCC--------------------------CCCTTSCHHH
T ss_pred             HHHHHHHHHHHHC-cCccccCcHHHeEECCCCc--EEEccCccceecCCCccccccccccccccccCCcccCccccCHHH
Confidence            9999999999996 9999999999999998887  999999999876542211             12479999999999


Q ss_pred             HHhhhhccCCCCCCCcchhhHHH
Q psy320          141 LEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus       141 ~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      +..      ..|+.++||||+|+
T Consensus       202 ~~~------~~y~~~~DiwSlGv  218 (299)
T 4g31_A          202 IHG------NSYSHKVDIFSLGL  218 (299)
T ss_dssp             HTT------CCCCTHHHHHHHHH
T ss_pred             HcC------CCCCCHHHHHHHHH
Confidence            984      44889999999965

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=3.5e-36  Score=252.66  Aligned_cols=158  Identities=17%  Similarity=0.206  Sum_probs=132.6

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|..++..++...|||||+++++|+    +..++|+||||+ ||+|.+++.+.+  ++++..++.++.||+.||.|||
T Consensus       236 ~~~E~~~l~ll~~~~HP~IV~l~~~f~----~~~~lylVmEy~~GGdL~~~l~~~~--~l~E~~a~~y~~qIl~aL~yLH  309 (689)
T 3v5w_A          236 ALNERIMLSLVSTGDCPFIVCMSYAFH----TPDKLSFILDLMNGGDLHYHLSQHG--VFSEADMRFYAAEIILGLEHMH  309 (689)
T ss_dssp             HHHHHHHHHHHSSSCCTTBCCEEEEEE----CSSEEEEEECCCCSCBHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCCCCEeEEEEEEE----ECCEEEEEEecCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHH
Confidence            345666666665445779999999999    678999999999 999999998874  5999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~  164 (202)
                      ++ ||+||||||+|||++.++.  +||+|||+|+..... .....+||+.|+|||++..     +..|+.++|+||+|+.
T Consensus       310 ~~-gIiHRDLKPeNILld~~G~--vKL~DFGlA~~~~~~-~~~t~~GTp~YmAPEvl~~-----~~~y~~~vDiWSLGvi  380 (689)
T 3v5w_A          310 NR-FVVYRDLKPANILLDEHGH--VRISDLGLACDFSKK-KPHASVGTHGYMAPEVLQK-----GVAYDSSADWFSLGCM  380 (689)
T ss_dssp             TT-TEECCCCSGGGEEECTTSC--EEECCCTTCEECSSC-CCCSCCSCGGGCCHHHHST-----TCCCCTHHHHHHHHHH
T ss_pred             HC-CccccCCchHHeEEeCCCC--EEecccceeeecCCC-CCCCccCCcCccCHHHHhC-----CCCCCcHHHHHHHHHH
Confidence            96 9999999999999999887  999999999876532 3345789999999999962     2348889999999973


Q ss_pred             HHHHHHHHHHHhcCCCCCCC
Q psy320          165 TTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~  184 (202)
                            +..|+.|.+||...
T Consensus       381 ------lYEmLtG~~PF~~~  394 (689)
T 3v5w_A          381 ------LFKLLRGHSPFRQH  394 (689)
T ss_dssp             ------HHHHHHSSCTTCGG
T ss_pred             ------HHHHHhCCCCCCCC
Confidence                  33667798888643

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=2.8e-36  Score=238.57  Aligned_cols=159  Identities=16%  Similarity=0.156  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC--------------CCCCCHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK--------------FQPAPLVVA   69 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~--------------~~~~~~~~~   69 (202)
                      .+.+|+++|.++. | |||||+++++|..   .+..+|+||||| +|+|.++++...              ...+++..+
T Consensus       113 ~~~~E~~il~~l~-h-hpnIV~l~g~~~~---~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~  187 (353)
T 4ase_A          113 ALMSELKILIHIG-H-HLNVVNLLGACTK---PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHL  187 (353)
T ss_dssp             HHHHHHHHHHHHC-C-CTTBCCEEEEECC---TTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHH
T ss_pred             HHHHHHHHHHHcC-C-CCcEEEEEEEEEe---cCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHH
Confidence            4678999999994 4 3499999999873   345789999999 999999997532              234889999


Q ss_pred             HHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC---CCCCCCccchhhHHHHhhhh
Q psy320           70 KIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ---QSSSKTKSKIFCEILEQCRL  146 (202)
Q Consensus        70 ~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~---~~~~~~~~~~ape~~~~~~~  146 (202)
                      ..++.|++.||.|||++ +|+||||||+|||++.++.  +||+|||+|+........   ....+|+.|+|||++...  
T Consensus       188 ~~~~~qia~gl~yLH~~-~iiHRDLK~~NILl~~~~~--vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~--  262 (353)
T 4ase_A          188 ICYSFQVAKGMEFLASR-KCIHRDLAARNILLSEKNV--VKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDR--  262 (353)
T ss_dssp             HHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEECGGGC--EEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHC--
T ss_pred             HHHHHHHHHHHHhHhhC-CeecCccCccceeeCCCCC--EEECcchhhhhcccCCCceeeccccccccccCHHHHhcC--
Confidence            99999999999999996 9999999999999998876  999999999876433221   234688999999999844  


Q ss_pred             ccCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCCCC
Q psy320          147 NQDFRLDPRVDPTSIKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       147 ~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~  182 (202)
                          .|+.++||||+|+..+     +.+..|.+||.
T Consensus       263 ----~y~~ksDVwS~Gv~l~-----El~t~G~~Pf~  289 (353)
T 4ase_A          263 ----VYTIQSDVWSFGVLLW-----EIFSLGASPYP  289 (353)
T ss_dssp             ----CCCHHHHHHHHHHHHH-----HHTTTSCCSST
T ss_pred             ----CCCCcccEeehHHHHH-----HHHhCCCCCCC
Confidence                4889999999986322     22223666664

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=1e-35  Score=238.84  Aligned_cols=161  Identities=18%  Similarity=0.212  Sum_probs=129.9

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecC--CceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGI--NGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~--~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ...+|+++|+.+ +||  |||++++++.....  +..++|+||||++|+|.+++.+.  +++++..++.++.|++.||.|
T Consensus        99 ~~~~Ei~il~~l-~Hp--nIv~l~~~~~~~~~~~~~~~~~ivmE~~~g~L~~~i~~~--~~l~~~~~~~~~~qil~al~y  173 (398)
T 4b99_A           99 RTLRELKILKHF-KHD--NIIAIKDILRPTVPYGEFKSVYVVLDLMESDLHQIIHSS--QPLTLEHVRYFLYQLLRGLKY  173 (398)
T ss_dssp             HHHHHHHHHHHC-CCT--TBCCEEEECCCSSCTTTCCCEEEEEECCSEEHHHHHTSS--SCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc-CCC--CcceEeeeeecccccccCCEEEEEEeCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHH
Confidence            456799999999 555  99999999874321  34689999999988999999765  469999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-----CCCCCCCCccchhhHHHHhhhhccCCCCCCCcc
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-----DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVD  157 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-----~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~D  157 (202)
                      ||++ ||+||||||+|||++.++.  +|++|||+|+......     .....+||+.|+|||++...     ..|+.++|
T Consensus       174 lH~~-~iiHRDlKP~NIl~~~~~~--~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~-----~~~~~~~D  245 (398)
T 4b99_A          174 MHSA-QVIHRDLKPSNLLVNENCE--LKIGDFGMARGLCTSPAEHQYFMTEYVATRWYRAPELMLSL-----HEYTQAID  245 (398)
T ss_dssp             HHHT-TCBCCCCCGGGEEECTTCC--EEECCCTTCBCC-------CCCCCSSCCCCTTCCHHHHTTC-----SCCCTHHH
T ss_pred             HHHC-cCcCCCcCccccccCCCCC--EEEeecceeeecccCccccccccccceeChHhcCHHHhcCC-----CCCCChhh
Confidence            9996 9999999999999998877  9999999998764321     12246899999999998732     23678999


Q ss_pred             hhhHHHHHHHHHHHHHHHhcCCCCCCC
Q psy320          158 PTSIKMYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       158 iwsl~~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      |||+|+      ++..++.|.++|...
T Consensus       246 iWSlG~------il~ell~G~~pF~g~  266 (398)
T 4b99_A          246 LWSVGC------IFGEMLARRQLFPGK  266 (398)
T ss_dssp             HHHHHH------HHHHHHHTSCSSCCS
T ss_pred             eehhHH------HHHHHHHCCCCCCCC
Confidence            999997      333666688888643

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=1.5e-35  Score=235.44  Aligned_cols=157  Identities=14%  Similarity=0.203  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++|+.+.+||  ||++++++|.    +..+.|+||||+ +++|.+++.     ++++..++.++.|++.||.||
T Consensus        65 ~~~~E~~~l~~~~~h~--nIv~l~~~~~----~~~~~~lvmE~~~g~~L~~~~~-----~l~~~~~~~~~~qll~al~yl  133 (361)
T 4f9c_A           65 RIAAELQCLTVAGGQD--NVMGVKYCFR----KNDHVVIAMPYLEHESFLDILN-----SLSFQEVREYMLNLFKALKRI  133 (361)
T ss_dssp             HHHHHHHHHHHTCSBT--TBCCCSEEEE----ETTEEEEEEECCCCCCHHHHHT-----TCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCC--CCceEEEEEE----ECCEEEEEEeCCCcccHHHHHc-----CCCHHHHHHHHHHHHHHHHHH
Confidence            4567888888886566  9999999999    467999999999 899999883     399999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-----------------------------CCCCCCCCcc
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-----------------------------DQQSSSKTKS  134 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-----------------------------~~~~~~~~~~  134 (202)
                      |++ ||+||||||+|||++.+.. .+||+|||+|+......                             .....+||+.
T Consensus       134 H~~-gIiHRDiKPeNiLl~~~~~-~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~  211 (361)
T 4f9c_A          134 HQF-GIVHRDVKPSNFLYNRRLK-KYALVDFGLAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPG  211 (361)
T ss_dssp             HHT-TEECSCCSGGGEEEETTTT-EEEECCCTTCEECTTCSCGGGGGC--------------------------CCCCGG
T ss_pred             HHC-CeEeCcCCHHHeEEeCCCC-eEEECcCCCCcccCCccccccccccccccccccccccccccccccccccccccCcc
Confidence            996 9999999999999987631 49999999997543211                             0113479999


Q ss_pred             chhhHHHHhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy320          135 KIFCEILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLNHQDFRPDP  185 (202)
Q Consensus       135 ~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~~~~  185 (202)
                      |+|||++.+.     ..|+.++|+||+|+      ++..++.|.+||.+..
T Consensus       212 Y~APE~l~~~-----~~y~~~~DiWSlG~------il~ell~G~~Pf~~~~  251 (361)
T 4f9c_A          212 FRAPEVLTKC-----PNQTTAIDMWSAGV------IFLSLLSGRYPFYKAS  251 (361)
T ss_dssp             GCCHHHHTTC-----SCCCTHHHHHHHHH------HHHHHHHTCSSSSCCS
T ss_pred             ccCHHHHcCC-----CCCCCccchhhhHH------HHHHHHHCCCCCCCCC
Confidence            9999999732     34778999999997      4446777998886543

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=2.8e-35  Score=229.00  Aligned_cols=139  Identities=17%  Similarity=0.240  Sum_probs=111.7

Q ss_pred             CccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhh-------CCcccc
Q psy320           21 SDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTK-------HNLVHT   92 (202)
Q Consensus        21 h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~-------~~ivH~   92 (202)
                      ||||+++++++...+.....+|+||||+ +|||.++++..   ++++..+..++.|++.||.|||++       .+|+||
T Consensus        56 HpNIv~l~g~~~~~~~~~~~~~lV~Ey~~~gsL~~~l~~~---~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHR  132 (303)
T 3hmm_A           56 HENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHR  132 (303)
T ss_dssp             CTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECS
T ss_pred             CCCCCcEEEEEEecCCCceEEEEEecCCCCCcHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeec
Confidence            6699999999997654556899999999 99999999874   399999999999999999999973       289999


Q ss_pred             CCCCCceeeecCCcceeEEeecccccccccccCC-----CCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHH
Q psy320           93 SIKPESIFFKADHVYIMTLINIQQATTHQECHDQ-----QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus        93 dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~-----~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~  164 (202)
                      ||||+|||++.++.  +||+|||+|+........     ....||+.|+|||++..........++.++||||+|+.
T Consensus       133 DlKp~NILl~~~~~--~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvv  207 (303)
T 3hmm_A          133 DLKSKNILVKKNGT--CCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLV  207 (303)
T ss_dssp             CCCGGGEEECTTSC--EEECCCTTCEEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCcccEEECCCCC--EEEEeCCCCccccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHH
Confidence            99999999998877  999999999876543221     13479999999999974321112235678999999873

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=6.8e-35  Score=244.02  Aligned_cols=158  Identities=21%  Similarity=0.266  Sum_probs=130.2

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +...+|+++|+.+ +||  ||++++++|.    +...+|+||||+ ||+|.+++.... +++++..++.++.|++.||.|
T Consensus       199 ~~~~~Ei~il~~l-~hp--nIv~l~~~~~----~~~~~~iv~E~~~gg~L~~~i~~~~-~~l~e~~~~~~~~qi~~al~y  270 (573)
T 3uto_A          199 ETVRKEIQTMSVL-RHP--TLVNLHDAFE----DDNEMVMIYEFMSGGELFEKVADEH-NKMSEDEAVEYMRQVCKGLCH  270 (573)
T ss_dssp             HHHHHHHHHHHHT-CCT--TBCCEEEEEE----CSSEEEEEEECCCCCBHHHHHTCTT-SCEEHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CCCeEEEEEE----ECCEEEEEEeecCCCcHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHH
Confidence            3456899999999 555  9999999999    677999999999 999999986433 469999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      ||++ ||+||||||+|||++.+....+||+|||+|+...........+||+.|+|||++.+      ..|+.++||||+|
T Consensus       271 lH~~-~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~~~~~~~~GT~~y~APEv~~~------~~y~~~~DiWSlG  343 (573)
T 3uto_A          271 MHEN-NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEG------KPVGYYTDMWSVG  343 (573)
T ss_dssp             HHHT-TEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTTSEEEEECSSGGGCCHHHHTT------CCBCHHHHHHHHH
T ss_pred             HHHC-CeeeccCChhhccccCCCCCCEEEeeccceeEccCCCceeeeEECccccCHHHhCC------CCCCcHHHHHHHH
Confidence            9996 99999999999999876434599999999998764443445689999999999984      4488899999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +..      ..++.|.++|.
T Consensus       344 vil------yeml~G~~Pf~  357 (573)
T 3uto_A          344 VLS------YILLSGLSPFG  357 (573)
T ss_dssp             HHH------HHHHHSCCSSC
T ss_pred             HHH------HHHHHCCCCCC
Confidence            632      24444666654

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=8.3e-32  Score=213.59  Aligned_cols=155  Identities=18%  Similarity=0.198  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++.+.+||  ||++++++|.    .....|+||||+ +++|.+++.+..  .+++..++.++.|++.||.||
T Consensus        69 ~~~~E~~il~~~~~hp--~Iv~l~~~~~----~~~~~~lv~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~L  140 (353)
T 3txo_A           69 CTMTEKRILSLARNHP--FLTQLFCCFQ----TPDRLFFVMEFVNGGDLMFHIQKSR--RFDEARARFYAAEIISALMFL  140 (353)
T ss_dssp             HHHHHHHHHHHTTTCT--TBCCEEEEEE----CSSEEEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCC--ceeeEEEEEE----eCCEEEEEEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHH
Confidence            3456788888775566  9999999998    677999999999 899999998764  499999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |++ ||+||||||+|||++.++.  +||+|||+|+...... .....+||+.|+|||++....      ++.++|+||+|
T Consensus       141 H~~-givHrDlkp~NILl~~~g~--ikL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~------~~~~~DiwslG  211 (353)
T 3txo_A          141 HDK-GIIYRDLKLDNVLLDHEGH--CKLADFGMCKEGICNGVTTATFCGTPDYIAPEILQEML------YGPAVDWWAMG  211 (353)
T ss_dssp             HHT-TCBCCCCCGGGEEECTTSC--EEECCCTTCBCSCC---------CCGGGCCHHHHHHHH------CTTHHHHHHHH
T ss_pred             HHC-CCcccCCCHHHEEECCCCC--EEEccccceeecccCCccccccCCCcCeEChhhcCCCC------cCCccCCCcch
Confidence            996 9999999999999998887  9999999998644322 233568999999999998665      78899999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +..+      .++.|.++|.
T Consensus       212 ~il~------ell~G~~Pf~  225 (353)
T 3txo_A          212 VLLY------EMLCGHAPFE  225 (353)
T ss_dssp             HHHH------HHHHSSCSSC
T ss_pred             HHHH------HHHhCCCCCC
Confidence            6322      4444666664

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.98  E-value=1.6e-31  Score=214.77  Aligned_cols=156  Identities=19%  Similarity=0.196  Sum_probs=131.6

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|..++.++.+||  ||++++++|.    +....|+||||+ +++|..++.+..  ++++..++.++.|++.||.||
T Consensus        98 ~~~~E~~il~~~~~hp--~Iv~l~~~~~----~~~~~~lV~E~~~gg~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~~L  169 (396)
T 4dc2_A           98 WVQTEKHVFEQASNHP--FLVGLHSCFQ----TESRLFFVIEYVNGGDLMFHMQRQR--KLPEEHARFYSAEISLALNYL  169 (396)
T ss_dssp             HHHHHHHHHHHHTTCT--TBCCEEEEEE----CSSEEEEEEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCC--CcCeeEEEEE----ECCEEEEEEEcCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHH
Confidence            3567888888876666  9999999999    677999999999 899999998764  599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccc-cCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQEC-HDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~-~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |++ ||+||||||+|||++.++.  +||+|||+|+..... ......+||+.|+|||++..      ..++.++|+||+|
T Consensus       170 H~~-givHrDLKp~NILl~~~g~--ikL~DFGla~~~~~~~~~~~~~~gt~~Y~aPE~l~~------~~~~~~~DiwslG  240 (396)
T 4dc2_A          170 HER-GIIYRDLKLDNVLLDSEGH--IKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRG------EDYGFSVDWWALG  240 (396)
T ss_dssp             HHT-TCBCCCCCGGGEEECTTSC--EEECCCTTCBCCCCTTCCBCCCCBCGGGCCHHHHTT------CCBCTHHHHHHHH
T ss_pred             HHC-CEEeccCCHHHEEECCCCC--EEEeecceeeecccCCCccccccCCcccCCchhhcC------CCCChHHHHHHHH
Confidence            996 9999999999999998887  999999999864332 23335689999999999984      3478899999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +.      +..++.|.++|..
T Consensus       241 vl------lyell~G~~Pf~~  255 (396)
T 4dc2_A          241 VL------MFEMMAGRSPFDI  255 (396)
T ss_dssp             HH------HHHHHHSSCSSTT
T ss_pred             HH------HHHHHhCCCCCcc
Confidence            73      3356668888853

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=99.97  E-value=2.2e-31  Score=209.23  Aligned_cols=154  Identities=16%  Similarity=0.233  Sum_probs=128.1

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++.+ +||  ||+++++++.    .....|+||||+ +++|.+++....  ++++..+..++.|++.||.||
T Consensus        60 ~~~~E~~~l~~l-~hp--nIv~l~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~al~~l  130 (328)
T 3fe3_A           60 KLFREVRIMKIL-NHP--NIVKLFEVIE----TEKTLYLIMEYASGGEVFDYLVAHG--RMKEKEARSKFRQIVSAVQYC  130 (328)
T ss_dssp             HHHHHHHHHHHC-CCT--TBCCEEEEEE----CSSEEEEEECCCTTCBHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCC--CEeeEEEEEE----ECCEEEEEEECCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHH
Confidence            345788888888 455  9999999998    677999999999 999999998764  499999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCC-CCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLD-PRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~-~~~Diwsl~  162 (202)
                      |+. |++||||||+||+++.++.  +||+|||++............++++.|+|||.+....      ++ +++|+||+|
T Consensus       131 H~~-~ivHrDlkp~NIll~~~~~--~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~------~~~~~~DiwslG  201 (328)
T 3fe3_A          131 HQK-RIVHRDLKAENLLLDADMN--IKIADFGFSNEFTVGGKLDAFCGAPPYAAPELFQGKK------YDGPEVDVWSLG  201 (328)
T ss_dssp             HHT-TCCCSCCCGGGEEECTTSC--EEECSTTCCGGGSSSCGGGTTSSSGGGCCHHHHHTCC------CCSHHHHHHHHH
T ss_pred             HHC-CEeccCCCHHHEEEcCCCC--EEEeeccCceecCCCCccccccCCcceeCcccccCCC------cCCchhhhhhhH
Confidence            996 9999999999999998877  9999999998776544445678999999999998432      44 589999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +..+      .+..|.++|.
T Consensus       202 ~il~------ell~g~~pf~  215 (328)
T 3fe3_A          202 VILY------TLVSGSLPFD  215 (328)
T ss_dssp             HHHH------HHHHSSCSSC
T ss_pred             HHHH------HHHhCCCCCC
Confidence            6322      4444666664

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=99.97  E-value=3.7e-31  Score=211.89  Aligned_cols=158  Identities=14%  Similarity=0.201  Sum_probs=132.0

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++.+ +||  ||++++++|.    +....|+||||+ +++|.+++...  +.+++..++.++.|++.||.||
T Consensus        61 ~~~~E~~il~~l-~hp--~Iv~l~~~~~----~~~~~~lv~e~~~gg~L~~~l~~~--~~l~~~~~~~~~~qi~~aL~~L  131 (384)
T 4fr4_A           61 NVFKELQIMQGL-EHP--FLVNLWYSFQ----DEEDMFMVVDLLLGGDLRYHLQQN--VHFKEETVKLFICELVMALDYL  131 (384)
T ss_dssp             HHHHHHHHHHTC-CCT--TBCCEEEEEE----CSSEEEEEECCCTTEEHHHHHHTT--CCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCC--CCCcEEEEEE----eCCEEEEEEecCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHH
Confidence            445788888877 455  9999999999    577999999999 99999999765  4599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |+. ||+||||||+|||++.++.  ++|+|||+++...........+||+.|+|||++....   ...++.++|+||+|+
T Consensus       132 H~~-givHrDlkp~NIll~~~g~--vkL~DFG~a~~~~~~~~~~~~~gt~~Y~aPE~~~~~~---~~~~~~~~DiwSlG~  205 (384)
T 4fr4_A          132 QNQ-RIIHRDMKPDNILLDEHGH--VHITDFNIAAMLPRETQITTMAGTKPYMAPEMFSSRK---GAGYSFAVDWWSLGV  205 (384)
T ss_dssp             HHT-TEECCCCSGGGEEECTTSC--EEECCCTTCEECCTTCCBCCCCSCGGGCCGGGTCCCS---SCCBCTTHHHHHHHH
T ss_pred             HHC-CceeccCcHHHeEECCCCC--EEEeccceeeeccCCCceeccCCCccccCCeeeccCC---CCCCCccceeechHH
Confidence            996 9999999999999998887  9999999998775444445678999999999986321   344778999999997


Q ss_pred             HHHHHHHHHHHHhcCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~  183 (202)
                      .      +..++.|.++|..
T Consensus       206 i------l~elltG~~Pf~~  219 (384)
T 4fr4_A          206 T------AYELLRGRRPYHI  219 (384)
T ss_dssp             H------HHHHHHSSCSSCC
T ss_pred             H------HHHHHhCCCCCCC
Confidence            3      3355668888864

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.97  E-value=8.1e-31  Score=203.92  Aligned_cols=164  Identities=20%  Similarity=0.172  Sum_probs=134.1

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecC-CceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGI-NGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~-~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ....+|++++++++...||||++++++|..... .....++||||++++|.+++.......+++..++.++.|++.||.|
T Consensus        56 ~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~  135 (308)
T 3g33_A           56 ISTVREVALLRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDF  135 (308)
T ss_dssp             HHHHHHHHHHHHHHHHCCTTBCCEEEEEEECCSSSEEEEEEEEECCCCBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhhcCCCCeEEeeeeeeccCCCCceeEEEEehhhhcCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHH
Confidence            356688888888865345599999999986432 2347899999998899999988765669999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      ||++ |++||||||+||+++.++.  +||+|||.++............+|+.|+|||.+..      ..++.++|+||+|
T Consensus       136 lH~~-~ivH~Dlkp~Nil~~~~~~--~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~DiwslG  206 (308)
T 3g33_A          136 LHAN-CIVHRDLKPENILVTSGGT--VKLADFGLARIYSYQMALTPVVVTLWYRAPEVLLQ------STYATPVDMWSVG  206 (308)
T ss_dssp             HHHT-TCCCSCCCTTTEEECTTSC--EEECSCSCTTTSTTCCCSGGGGCCCSSCCHHHHHT------SCCCSTHHHHHHH
T ss_pred             HHHC-CcccCCCCHHHEEEcCCCC--EEEeeCccccccCCCcccCCccccccccCchHHcC------CCCCchHHHHHHH
Confidence            9996 9999999999999988877  99999999987654444445678999999999984      3378899999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +..      ..+..|.++|.
T Consensus       207 ~il------~~l~~g~~pf~  220 (308)
T 3g33_A          207 CIF------AEMFRRKPLFC  220 (308)
T ss_dssp             HHH------HHTTTSSCSCC
T ss_pred             HHH------HHHHhCCCCCC
Confidence            733      35556777664

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.97  E-value=9e-31  Score=207.06  Aligned_cols=155  Identities=19%  Similarity=0.184  Sum_probs=129.2

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+.+++++.+||  ||++++++|.    .....|+||||+ +++|.+++.+..  .+++..++.++.|++.||.|||
T Consensus        56 ~~~E~~~l~~~~~hp--~iv~l~~~~~----~~~~~~lv~e~~~gg~L~~~l~~~~--~l~~~~~~~~~~qi~~aL~~LH  127 (345)
T 3a8x_A           56 VQTEKHVFEQASNHP--FLVGLHSCFQ----TESRLFFVIEYVNGGDLMFHMQRQR--KLPEEHARFYSAEISLALNYLH  127 (345)
T ss_dssp             HHHHHHHHHHTTTCT--TBCCEEEEEE----CSSEEEEEECCCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCC--ccCeEEEEEE----eCCEEEEEEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHH
Confidence            456777777775555  9999999998    577999999999 899999998764  4999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      ++ ||+||||||+|||++.++.  +||+|||+++...... .....++|+.|+|||++..      ..++.++|+||+|+
T Consensus       128 ~~-~ivHrDlkp~NIll~~~g~--~kL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~DiwslG~  198 (345)
T 3a8x_A          128 ER-GIIYRDLKLDNVLLDSEGH--IKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRG------EDYGFSVDWWALGV  198 (345)
T ss_dssp             HT-TCBCCCCCGGGEEECTTSC--EEECCGGGCBCSCCTTCCBCCCCSCGGGCCHHHHTT------CCBCTHHHHHHHHH
T ss_pred             HC-CceecCCCHHHEEECCCCC--EEEEeccccccccCCCCcccccCCCccccCccccCC------CCCChHHhHHHHHH
Confidence            96 9999999999999998877  9999999998643322 2335689999999999984      34788999999987


Q ss_pred             HHHHHHHHHHHHhcCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~  183 (202)
                      .      +..+..|.++|..
T Consensus       199 i------l~ell~g~~pf~~  212 (345)
T 3a8x_A          199 L------MFEMMAGRSPFDI  212 (345)
T ss_dssp             H------HHHHHHSSCTTTT
T ss_pred             H------HHHHHhCCCCcCC
Confidence            3      3355568888853

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.97  E-value=1e-30  Score=206.69  Aligned_cols=154  Identities=19%  Similarity=0.199  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|.+++..+.+||  ||++++++|.    +....|+||||+ +++|.+++.+..  .+++..++.++.|++.||.|||
T Consensus        64 ~~~E~~il~~~~~hp--~iv~l~~~~~----~~~~~~lv~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH  135 (345)
T 1xjd_A           64 TMVEKRVLSLAWEHP--FLTHMFCTFQ----TKENLFFVMEYLNGGDLMYHIQSCH--KFDLSRATFYAAEIILGLQFLH  135 (345)
T ss_dssp             HHHHHHHHHHHTTCT--TBCCEEEEEE----CSSEEEEEEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCC--CCCcEEEEEE----eCCEEEEEEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHH
Confidence            456777777765555  9999999998    677999999999 999999998763  4999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccc-cCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQEC-HDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~-~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      ++ |++||||||+|||++.++.  +||+|||+++..... ......+||+.|+|||++..      ..++.++|+||+|+
T Consensus       136 ~~-~ivHrDlkp~NIll~~~g~--vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~DiwslG~  206 (345)
T 1xjd_A          136 SK-GIVYRDLKLDNILLDKDGH--IKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLG------QKYNHSVDWWSFGV  206 (345)
T ss_dssp             HT-TCBCCCCCGGGEEECTTSC--EEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTT------CCBCTHHHHHHHHH
T ss_pred             HC-CeEeCCCChhhEEECCCCC--EEEeEChhhhhcccCCCcccCCCCCcccCChhhhcC------CCCCChhhhHHHHH
Confidence            96 9999999999999998887  999999999865322 22335689999999999984      34788999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~  182 (202)
                      ..+      .+..|.++|.
T Consensus       207 il~------ell~g~~Pf~  219 (345)
T 1xjd_A          207 LLY------EMLIGQSPFH  219 (345)
T ss_dssp             HHH------HHHHSSCSSC
T ss_pred             HHH------HHhcCCCCCC
Confidence            322      4444666664

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.97  E-value=4.2e-31  Score=213.23  Aligned_cols=158  Identities=16%  Similarity=0.212  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+.+++.+ +||  ||++++++|.    +....|+||||+ +++|.+++...   ++++..++.++.|++.||.||
T Consensus       115 ~~~~E~~il~~l-~hp--~Iv~l~~~~~----~~~~~~lV~E~~~gg~L~~~l~~~---~~~e~~~~~~~~qi~~aL~~L  184 (410)
T 3v8s_A          115 FFWEERDIMAFA-NSP--WVVQLFYAFQ----DDRYLYMVMEYMPGGDLVNLMSNY---DVPEKWARFYTAEVVLALDAI  184 (410)
T ss_dssp             THHHHHHHHHHC-CCT--TBCCEEEEEE----CSSEEEEEECCCTTEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCC--CCCeEEEEEE----ECCEEEEEEeCCCCCcHHHHHHcC---CCCHHHHHHHHHHHHHHHHHH
Confidence            356788888887 555  9999999999    677999999999 99999998764   499999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC--CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD--QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~--~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      |+. ||+||||||+|||++.++.  +||+|||+|+.......  ....+||+.|+|||++....  ....++.++|+||+
T Consensus       185 H~~-givHrDLKp~NILl~~~g~--ikL~DFG~a~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~--~~~~~~~~~DiwSl  259 (410)
T 3v8s_A          185 HSM-GFIHRDVKPDNMLLDKSGH--LKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQG--GDGYYGRECDWWSV  259 (410)
T ss_dssp             HHT-TEECCCCSGGGEEECTTSC--EEECCCTTCEECCTTSEEECCSCCSCGGGCCHHHHHTTT--TTCEEETHHHHHHH
T ss_pred             HHC-CeEeccCCHHHeeECCCCC--EEEeccceeEeeccCCcccccCCcCCccccCHHHhhccC--CCcCCCCcceEecc
Confidence            996 9999999999999998887  99999999987654332  23568999999999998432  11125679999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCC
Q psy320          162 KMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      |+..      ..++.|.++|..
T Consensus       260 Gvil------yell~G~~Pf~~  275 (410)
T 3v8s_A          260 GVFL------YEMLVGDTPFYA  275 (410)
T ss_dssp             HHHH------HHHHHSSCTTCC
T ss_pred             hHHH------HHHHhCCCCCCC
Confidence            8733      255557777754

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.97  E-value=6.6e-31  Score=211.67  Aligned_cols=166  Identities=17%  Similarity=0.187  Sum_probs=126.4

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+.++.++.+||  ||++++++|.....+....|+||||+ +++|.+++.......+++..++.++.|++.||.||
T Consensus       100 ~~~~E~~~~~~~~~hp--~iv~l~~~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~L  177 (400)
T 1nxk_A          100 KARREVELHWRASQCP--HIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYL  177 (400)
T ss_dssp             HHHHHHHHHHHHTTST--TBCCEEEEEEEEETTEEEEEEEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhcCCC--CcceEeEEEeecccCCcEEEEEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            4567888887775666  99999999985443467899999999 89999999876545699999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCC-cceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADH-VYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~-~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |+. ||+||||||+|||++.++ ...+||+|||+++...........++|+.|+|||++.      ...++.++|+||+|
T Consensus       178 H~~-~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~------~~~~~~~~DiwslG  250 (400)
T 1nxk_A          178 HSI-NIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLG------PEKYDKSCDMWSLG  250 (400)
T ss_dssp             HHT-TEECCCCCGGGEEESSSSTTCCEEECCCTTCEECC-----------CTTCCGGGSC------CCCSSSHHHHHHHH
T ss_pred             HHC-CccccCcCcceEEEecCCCCccEEEEecccccccCCCCccccCCCCCCccCHhhcC------CCCCCCcccHHHHH
Confidence            995 999999999999998732 2349999999998765444444567899999999986      34478899999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFRPDP  185 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~  185 (202)
                      +.      +..+..|.++|....
T Consensus       251 ~i------l~ell~g~~pf~~~~  267 (400)
T 1nxk_A          251 VI------MYILLCGYPPFYSNH  267 (400)
T ss_dssp             HH------HHHHHHSSCSCCCCT
T ss_pred             HH------HHHHHhCCCCCCCCc
Confidence            73      335566888886543

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=99.97  E-value=8.2e-31  Score=206.67  Aligned_cols=154  Identities=18%  Similarity=0.161  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++.+ +  ||||++++++|.    .....|+||||+ +++|.+++.+..  .+++..++.++.|++.||.||
T Consensus        51 ~~~~E~~~l~~l-~--hp~iv~l~~~~~----~~~~~~lv~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~L  121 (337)
T 1o6l_A           51 HTVTESRVLQNT-R--HPFLTALKYAFQ----THDRLCFVMEYANGGELFFHLSRER--VFTEERARFYGAEIVSALEYL  121 (337)
T ss_dssp             HHHHHHHHHHSC-C--CTTBCCEEEEEE----CSSEEEEEEECCTTCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-C--CCcCcceEEEEE----eCCEEEEEEeCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHH
Confidence            345677777766 4  459999999999    577999999999 899999998763  599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |++ ||+||||||+|||++.++.  +||+|||+++.....+ .....+||+.|+|||++..      ..++.++|+||+|
T Consensus       122 H~~-~ivHrDlkp~NIll~~~g~--vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~DiwslG  192 (337)
T 1o6l_A          122 HSR-DVVYRDIKLENLMLDKDGH--IKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLED------NDYGRAVDWWGLG  192 (337)
T ss_dssp             HHT-TCBCCCCCGGGEEECTTSC--EEECCCTTCBCSCCTTCCBCCCEECGGGCCGGGGSS------SCBCTTHHHHHHH
T ss_pred             HHC-CeecCcCCHHHEEECCCCC--EEEeeccchhhcccCCCcccccccChhhCChhhhcC------CCCCchhhcccch
Confidence            996 9999999999999998887  9999999998643322 2335679999999999873      4478899999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +..+      .+..|.++|.
T Consensus       193 ~il~------ell~g~~Pf~  206 (337)
T 1o6l_A          193 VVMY------EMMCGRLPFY  206 (337)
T ss_dssp             HHHH------HHHHSSCSSC
T ss_pred             hHHH------HHhcCCCCCC
Confidence            6322      4444666664

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=99.97  E-value=1.5e-30  Score=201.77  Aligned_cols=142  Identities=19%  Similarity=0.279  Sum_probs=121.3

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +...+|+.+++.+ +||  ||++++++|.    .+...|+||||+ +++|.+++...   .+++..+..++.|++.||.|
T Consensus        62 ~~~~~E~~~l~~l-~hp--~iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~~---~~~~~~~~~~~~qi~~~l~~  131 (297)
T 3fxz_A           62 ELIINEILVMREN-KNP--NIVNYLDSYL----VGDELWVVMEYLAGGSLTDVVTET---CMDEGQIAAVCRECLQALEF  131 (297)
T ss_dssp             HHHHHHHHHHHHC-CCT--TBCCEEEEEE----ETTEEEEEEECCTTCBHHHHHHHS---CCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC-CCC--CCCeEeEEEE----ECCEEEEEEECCCCCCHHHHHhhc---CCCHHHHHHHHHHHHHHHHH
Confidence            3456788888887 555  9999999998    466899999999 99999999775   39999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC-CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD-QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~-~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      ||++ |++||||||+|||++.++.  +||+|||.+........ .....+++.|+|||.+..      ..++.++|+||+
T Consensus       132 lH~~-~i~H~Dlkp~Nil~~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~Diwsl  202 (297)
T 3fxz_A          132 LHSN-QVIHRDIKSDNILLGMDGS--VKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTR------KAYGPKVDIWSL  202 (297)
T ss_dssp             HHHT-TEECCCCSGGGEEECTTCC--EEECCCTTCEECCSTTCCBCCCCSCGGGCCHHHHHC------SCBCTHHHHHHH
T ss_pred             HHhC-CceeCCCCHHHEEECCCCC--EEEeeCCCceecCCcccccCCccCCcCccChhhhcC------CCCCcHHHHHHH
Confidence            9996 9999999999999998877  99999999987654332 234579999999999983      347889999999


Q ss_pred             HHH
Q psy320          162 KMY  164 (202)
Q Consensus       162 ~~~  164 (202)
                      |+.
T Consensus       203 G~i  205 (297)
T 3fxz_A          203 GIM  205 (297)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            863

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.97  E-value=5.2e-31  Score=209.60  Aligned_cols=158  Identities=23%  Similarity=0.305  Sum_probs=129.9

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ....+|+.+++.+ +||  ||++++++|.    +....|+||||+ +++|.+++...  +.+++..+..++.|++.||.|
T Consensus        60 ~~~~~E~~il~~l-~hp--nIv~l~~~~~----~~~~~~lv~e~~~gg~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~~  130 (361)
T 2yab_A           60 EEIEREVSILRQV-LHP--NIITLHDVYE----NRTDVVLILELVSGGELFDFLAQK--ESLSEEEATSFIKQILDGVNY  130 (361)
T ss_dssp             HHHHHHHHHHTTC-CCT--TBCCEEEEEE----CSSEEEEEEECCCSCBHHHHHTTC--SCCBHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCc--CCCcEEEEEE----eCCEEEEEEEcCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHH
Confidence            3456788888888 455  9999999998    677999999999 99999999664  459999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCc--ceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHV--YIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~--~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      ||+. |++||||||+|||++.++.  ..+||+|||++.............||+.|+|||++..      ..++.++|+||
T Consensus       131 LH~~-givHrDlkp~NIll~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~Diws  203 (361)
T 2yab_A          131 LHTK-KIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNY------EPLGLEADMWS  203 (361)
T ss_dssp             HHHT-TEECCCCSGGGEEESCTTSSSCCEEECCCSSCEECCTTCCCCCCCSCGGGCCHHHHTT------CCCCTHHHHHH
T ss_pred             HHHC-CcccCCCCHHHEEEeCCCCCccCEEEEecCCceEcCCCCccccCCCCccEECchHHcC------CCCCccccHHH
Confidence            9996 9999999999999987651  1499999999988765444445689999999999873      34788999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCC
Q psy320          161 IKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       161 l~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +|+..+      .++.|.++|..
T Consensus       204 lGvil~------~ll~g~~Pf~~  220 (361)
T 2yab_A          204 IGVITY------ILLSGASPFLG  220 (361)
T ss_dssp             HHHHHH------HHHHSCCSSCC
T ss_pred             HHHHHH------HHHhCCCCCCC
Confidence            986322      45557776653

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.97  E-value=8.9e-31  Score=207.67  Aligned_cols=154  Identities=15%  Similarity=0.089  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|.+++..+.+  ||||++++++|.    .....|+||||+ +++|.+++.+..  .+++..++.++.|++.||.|||
T Consensus        67 ~~~E~~~l~~~~~--hp~iv~l~~~~~----~~~~~~lv~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH  138 (353)
T 2i0e_A           67 TMVEKRVLALPGK--PPFLTQLHSCFQ----TMDRLYFVMEYVNGGDLMYHIQQVG--RFKEPHAVFYAAEIAIGLFFLQ  138 (353)
T ss_dssp             HHHHHHHHTCTTC--CTTBCCEEEEEE----CSSEEEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCC--CCEEeeEEEEEE----cCCEEEEEEeCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHH
Confidence            3456666655544  459999999998    577999999999 899999998764  4999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      +. ||+||||||+|||++.++.  +||+|||+++...... .....+||+.|+|||++..      ..++.++|+||+|+
T Consensus       139 ~~-givHrDlkp~NIll~~~g~--vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~DiwslG~  209 (353)
T 2i0e_A          139 SK-GIIYRDLKLDNVMLDSEGH--IKIADFGMCKENIWDGVTTKTFCGTPDYIAPEIIAY------QPYGKSVDWWAFGV  209 (353)
T ss_dssp             HT-TCBCCCCCGGGEEECTTSC--EEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTT------CCBSTHHHHHHHHH
T ss_pred             HC-CEEeccCCHHHEEEcCCCc--EEEEeCCcccccccCCcccccccCCccccChhhhcC------CCcCCcccccchHH
Confidence            96 9999999999999998887  9999999998643322 2335689999999999973      34788999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~  182 (202)
                      ..+      .+..|.++|.
T Consensus       210 il~------ell~G~~Pf~  222 (353)
T 2i0e_A          210 LLY------EMLAGQAPFE  222 (353)
T ss_dssp             HHH------HHHHSSCSSC
T ss_pred             HHH------HHHcCCCCCC
Confidence            322      4444666654

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.97  E-value=8.1e-31  Score=213.08  Aligned_cols=160  Identities=17%  Similarity=0.191  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+.++..+ +||  ||++++++|.    +....|+||||+ +++|.+++.+.. +.+++..++.++.|++.||.|||
T Consensus       121 ~~~E~~il~~~-~hp--~Iv~l~~~~~----~~~~~~lV~Ey~~gg~L~~~l~~~~-~~l~e~~~~~~~~qi~~aL~~LH  192 (437)
T 4aw2_A          121 FREERDVLVNG-DSK--WITTLHYAFQ----DDNNLYLVMDYYVGGDLLTLLSKFE-DRLPEEMARFYLAEMVIAIDSVH  192 (437)
T ss_dssp             HHHHHHHHHHS-CTT--TBCCEEEEEE----CSSEEEEEECCCTTCBHHHHHHTTT-TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCC--CEEEEEEEEe----eCCEEEEEEecCCCCcHHHHHHHcc-CCCCHHHHHHHHHHHHHHHHHHH
Confidence            56788888777 455  9999999999    677999999999 999999997643 45999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC--CCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ--QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~--~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      +. ||+||||||+|||++.++.  +||+|||+|+........  ...+||+.|+|||++..... ....++.++|+||+|
T Consensus       193 ~~-giiHrDLKp~NILl~~~g~--vkL~DFGla~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~-~~~~~~~~~DvwSlG  268 (437)
T 4aw2_A          193 QL-HYVHRDIKPDNILMDMNGH--IRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEG-GKGRYGPECDWWSLG  268 (437)
T ss_dssp             HT-TEECCCCSGGGEEECTTSC--EEECCCTTCEECCTTSCEECCSCCSCGGGCCHHHHHHHHT-SCCEECTHHHHHHHH
T ss_pred             hC-CeEecccCHHHeeEcCCCC--EEEcchhhhhhcccCCCcccccccCCcCeeChHHHhhccc-CCCCCCCcCeeHHHH
Confidence            96 9999999999999998887  999999999876543322  23589999999999974321 123478899999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +..+      .++.|.++|..
T Consensus       269 vil~------elltG~~Pf~~  283 (437)
T 4aw2_A          269 VCMY------EMLYGETPFYA  283 (437)
T ss_dssp             HHHH------HHHHSSCTTCC
T ss_pred             HHHH------HHHhCCCCCCC
Confidence            6322      44557777653

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.97  E-value=7.7e-31  Score=206.75  Aligned_cols=156  Identities=19%  Similarity=0.271  Sum_probs=130.9

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ...+|+++++.+ +||  ||+++++++.    .....++||||++++|.+++....  ++++..++.++.|++.||.|||
T Consensus        55 ~~~~E~~~l~~l-~hp--nIv~l~~~~~----~~~~~~lv~E~~~g~l~~~l~~~~--~l~~~~~~~i~~qi~~aL~~LH  125 (336)
T 3h4j_B           55 RVEREISYLKLL-RHP--HIIKLYDVIT----TPTDIVMVIEYAGGELFDYIVEKK--RMTEDEGRRFFQQIICAIEYCH  125 (336)
T ss_dssp             HHHHHHHHHTTC-CCT--TBCCEEEEEE----CSSEEEEEECCCCEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCC--CCCeEEEEEE----eCCEEEEEEECCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHH
Confidence            456788888877 455  9999999998    577899999999999999987764  5999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCC-CCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRL-DPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~-~~~~Diwsl~~  163 (202)
                      +. |++||||||+|||++.++.  +||+|||++............++++.|+|||.+....      + ++++|+||+|+
T Consensus       126 ~~-givH~Dlkp~NIll~~~~~--~kl~DFG~s~~~~~~~~~~~~~gt~~y~aPE~~~~~~------~~~~~~DiwslG~  196 (336)
T 3h4j_B          126 RH-KIVHRDLKPENLLLDDNLN--VKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVINGKL------YAGPEVDVWSCGI  196 (336)
T ss_dssp             HH-TCCCCCCSTTTEEECTTCC--EEECCSSCTBTTTTSBTTCCCTTSTTTSCGGGSCCSG------GGCHHHHHHHHHH
T ss_pred             HC-CeEecCCchhhEEEcCCCC--EEEEEeccceeccCCcccccccCCcCcCCHHHHcCCC------CCCCccchhHHHH
Confidence            97 9999999999999998877  9999999998876554445678999999999987332      3 56899999997


Q ss_pred             HHHHHHHHHHHHhcCCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      .      +..+..|..+|...
T Consensus       197 i------l~~ll~g~~Pf~~~  211 (336)
T 3h4j_B          197 V------LYVMLVGRLPFDDE  211 (336)
T ss_dssp             H------HHHHHHSSCSSBCS
T ss_pred             H------HHHHHhCCCCCCCc
Confidence            3      33566688888643

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.97  E-value=1.4e-30  Score=203.80  Aligned_cols=151  Identities=16%  Similarity=0.215  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+.+++.+ +  ||||++++++|.    +....|+||||+ +++|.+++.+.  +.+++..++.++.|++.||.|||
T Consensus        53 ~~~E~~~l~~l-~--hp~Iv~~~~~~~----~~~~~~lv~e~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~aL~~LH  123 (318)
T 1fot_A           53 TNDERLMLSIV-T--HPFIIRMWGTFQ----DAQQIFMIMDYIEGGELFSLLRKS--QRFPNPVAKFYAAEVCLALEYLH  123 (318)
T ss_dssp             HHHHHHHHHSC-C--BTTBCCEEEEEE----CSSEEEEEECCCCSCBHHHHHHHT--SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhC-C--CCCCceEeEEEE----eCCEEEEEEeCCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH
Confidence            44677777666 4  559999999998    677999999999 89999999876  35999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~  164 (202)
                      ++ |++||||||+|||++.++.  +||+|||+++....  .....++|+.|+|||++..      ..++.++|+||+|+.
T Consensus       124 ~~-~ivHrDlkp~NIll~~~g~--~kL~Dfg~a~~~~~--~~~~~~gt~~y~aPE~~~~------~~~~~~~DiwslG~i  192 (318)
T 1fot_A          124 SK-DIIYRDLKPENILLDKNGH--IKITDFGFAKYVPD--VTYTLCGTPDYIAPEVVST------KPYNKSIDWWSFGIL  192 (318)
T ss_dssp             TT-TEECCCCCGGGEEECTTSC--EEECCCSSCEECSS--CBCCCCSCTTTCCHHHHTT------CCBCTTHHHHHHHHH
T ss_pred             HC-CccccCCChheEEEcCCCC--EEEeecCcceecCC--ccccccCCccccCHhHhcC------CCCCcccchhhhHHH
Confidence            96 9999999999999998877  99999999987542  2335679999999999873      347889999999863


Q ss_pred             HHHHHHHHHHHhcCCCCC
Q psy320          165 TTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~  182 (202)
                      .+      .+..|.++|.
T Consensus       193 l~------ell~g~~pf~  204 (318)
T 1fot_A          193 IY------EMLAGYTPFY  204 (318)
T ss_dssp             HH------HHHHSSCTTC
T ss_pred             HH------HHHhCCCCCC
Confidence            22      4444655554

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.97  E-value=1.2e-30  Score=217.60  Aligned_cols=159  Identities=18%  Similarity=0.185  Sum_probs=134.1

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++.+ +||  ||++++++|.    +....|+||||+ +++|.+++.......+++..++.++.|++.||.||
T Consensus       230 ~~~~E~~iL~~l-~hp--~Iv~l~~~~~----~~~~l~lVmEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yL  302 (576)
T 2acx_A          230 MALNEKQILEKV-NSR--FVVSLAYAYE----TKDALCLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDL  302 (576)
T ss_dssp             HHHHHHHHHHHC-CCT--TBCCEEEEEE----CSSEEEEEECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc-CCC--CEeeEEEEEe----eCCEEEEEEEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            356788888888 555  9999999998    677999999999 99999999876555699999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |+. ||+||||||+|||++.++.  +||+|||+++............||+.|+|||++...      .++.++|+||+|+
T Consensus       303 H~~-gIvHrDLKPeNILld~~g~--vKL~DFGla~~~~~~~~~~~~~GT~~Y~APEvl~~~------~~~~~~DiwSLGv  373 (576)
T 2acx_A          303 HRE-RIVYRDLKPENILLDDHGH--IRISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVKNE------RYTFSPDWWALGC  373 (576)
T ss_dssp             HHT-TEECCCCCGGGEEECTTSC--EEECCCTTCEECCTTCCEECCCSCGGGCCHHHHTTC------EESSHHHHHHHHH
T ss_pred             HHC-CEeccCCchheEEEeCCCC--eEEEecccceecccCccccccCCCccccCHHHHcCC------CCCccchHHHHHH
Confidence            996 9999999999999998877  999999999877544333456899999999999843      3788999999997


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRPDP  185 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~  185 (202)
                      .      +..++.|.++|....
T Consensus       374 i------lyeLltG~~PF~~~~  389 (576)
T 2acx_A          374 L------LYEMIAGQSPFQQRK  389 (576)
T ss_dssp             H------HHHHHHSSCSSSCSS
T ss_pred             H------HHHHHhCCCCCcccc
Confidence            3      335666888887543

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.97  E-value=8.2e-31  Score=208.55  Aligned_cols=159  Identities=13%  Similarity=0.066  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHc---CCCCCCHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQ---KFQPAPLVVAKIIVNQILEGL   80 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~---~~~~~~~~~~~~~~~qi~~~l   80 (202)
                      .+.+|++++++++...|+||+.+++++.    .....|+||||+ +++|.+++...   ..+.+++..++.++.|++.||
T Consensus       110 ~~~~e~~~~~~l~~~~~~~iv~~~~~~~----~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L  185 (365)
T 3e7e_A          110 EFYIGTQLMERLKPSMQHMFMKFYSAHL----FQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMI  185 (365)
T ss_dssp             HHHHHHHHHHHSCGGGGGGBCCEEEEEE----CSSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhhhhhhhheeee----cCCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHH
Confidence            4567888888885444779999999998    567889999999 89999999753   235699999999999999999


Q ss_pred             HHHHhhCCccccCCCCCceeeec-----------CCcceeEEeecccccccccc---cCCCCCCCCccchhhHHHHhhhh
Q psy320           81 NHLHTKHNLVHTSIKPESIFFKA-----------DHVYIMTLINIQQATTHQEC---HDQQSSSKTKSKIFCEILEQCRL  146 (202)
Q Consensus        81 ~~lh~~~~ivH~dl~p~nil~~~-----------~~~~~~~l~Dfg~a~~~~~~---~~~~~~~~~~~~~ape~~~~~~~  146 (202)
                      .|||+. ||+||||||+|||++.           ++.  +||+|||+|+.....   .......||+.|+|||++..   
T Consensus       186 ~~lH~~-~ivHrDiKp~NIll~~~~~~~~~~~~~~~~--~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---  259 (365)
T 3e7e_A          186 EQVHDC-EIIHGDIKPDNFILGNGFLEQDDEDDLSAG--LALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSN---  259 (365)
T ss_dssp             HHHHTT-TEECCCCSGGGEEECGGGTCC------CTT--EEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTT---
T ss_pred             HHHhhC-CeecCCCCHHHEEecccccCccccccccCC--EEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcC---
Confidence            999995 9999999999999987           555  999999999765321   22234679999999999984   


Q ss_pred             ccCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCCCC
Q psy320          147 NQDFRLDPRVDPTSIKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       147 ~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~  182 (202)
                         ..++.++|+||+|+..      -.++.|..+|.
T Consensus       260 ---~~~~~~~DiwslG~il------~elltg~~pf~  286 (365)
T 3e7e_A          260 ---KPWNYQIDYFGVAATV------YCMLFGTYMKV  286 (365)
T ss_dssp             ---CCBSTHHHHHHHHHHH------HHHHHSSCCCE
T ss_pred             ---CCCCccccHHHHHHHH------HHHHhCCCccc
Confidence               3378899999998732      25555766654

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.97  E-value=2.2e-30  Score=206.12  Aligned_cols=156  Identities=17%  Similarity=0.205  Sum_probs=128.1

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++.+ +||  ||+++++++.    .....|+||||+ +++|.+.+...  +.+++..+..++.|++.||.||
T Consensus        74 ~~~~E~~il~~l-~hp--nIv~~~~~~~----~~~~~~lv~e~~~gg~L~~~l~~~--~~~~~~~~~~~~~qi~~al~~l  144 (362)
T 2bdw_A           74 KLEREARICRKL-QHP--NIVRLHDSIQ----EESFHYLVFDLVTGGELFEDIVAR--EFYSEADASHCIQQILESIAYC  144 (362)
T ss_dssp             HHHHHHHHHHHC-CCT--TBCCEEEEEE----CSSEEEEEECCCCSCBHHHHHTTC--SCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCC--CCCeEEEEEE----eCCEEEEEEecCCCCCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHH
Confidence            355789988888 555  9999999998    577999999999 89999988765  4599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCc-ceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHV-YIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~-~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |+. ||+||||||+|||++.++. ..+||+|||++.............+|+.|+|||++..      ..++.++|+||+|
T Consensus       145 H~~-~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~DiwslG  217 (362)
T 2bdw_A          145 HSN-GIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKK------DPYSKPVDIWACG  217 (362)
T ss_dssp             HHT-TCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCTTCCSCCCSCSCTTTCCHHHHTT------CCCCTHHHHHHHH
T ss_pred             HHC-CeEeccCchHHEEEecCCCCCCEEEeecCcceEecCCcccccCCCCccccCHHHHcc------CCCCchhhHHHHH
Confidence            996 9999999999999986542 3499999999988764444445689999999999873      3478899999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +..+      .+..|.++|.
T Consensus       218 ~il~------~ll~g~~Pf~  231 (362)
T 2bdw_A          218 VILY------ILLVGYPPFW  231 (362)
T ss_dssp             HHHH------HHHHSSCSSC
T ss_pred             HHHH------HHHHCCCCCC
Confidence            6322      4444666654

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.97  E-value=2.7e-30  Score=210.49  Aligned_cols=144  Identities=18%  Similarity=0.209  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++.+ +||  ||++++++|.    +....|+||||+ +++|.+.+....  .+++..+..++.|++.||.||
T Consensus        56 ~~~~E~~il~~l-~hp--nIv~l~~~~~----~~~~~~lv~E~~~gg~L~~~i~~~~--~~~e~~~~~i~~qil~aL~~l  126 (444)
T 3soa_A           56 KLEREARICRLL-KHP--NIVRLHDSIS----EEGHHYLIFDLVTGGELFEDIVARE--YYSEADASHCIQQILEAVLHC  126 (444)
T ss_dssp             HHHHHHHHHHHC-CBT--TBCCEEEEEE----CSSEEEEEECCCBCCBHHHHHHHCS--CCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCc--CCCeEEEEEE----ECCEEEEEEEeCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHH
Confidence            456789988888 555  9999999998    677999999999 899999998764  499999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCC-cceeEEeecccccccccccCC-CCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           84 HTKHNLVHTSIKPESIFFKADH-VYIMTLINIQQATTHQECHDQ-QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~-~~~~~l~Dfg~a~~~~~~~~~-~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      |++ ||+||||||+|||++.+. ...+||+|||++......... ....||+.|+|||++..      ..++.++|+||+
T Consensus       127 H~~-givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~~~~~~~~~~~gt~~Y~APE~l~~------~~~~~~~DIwSl  199 (444)
T 3soa_A          127 HQM-GVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAGTPGYLSPEVLRK------DPYGKPVDLWAC  199 (444)
T ss_dssp             HHT-TCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCCTTCCBCCCSCSCGGGCCHHHHTT------CCBCTHHHHHHH
T ss_pred             HHC-CccccCCCHHHEEEeccCCCCcEEEccCceeEEecCCCceeecccCCcccCCHHHhcC------CCCCCccccHHH
Confidence            996 999999999999998542 234999999999876543322 34689999999999874      347889999999


Q ss_pred             HHH
Q psy320          162 KMY  164 (202)
Q Consensus       162 ~~~  164 (202)
                      |+.
T Consensus       200 Gvi  202 (444)
T 3soa_A          200 GVI  202 (444)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            863

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.97  E-value=2.4e-30  Score=208.92  Aligned_cols=162  Identities=16%  Similarity=0.175  Sum_probs=130.8

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+.++..+ +||  ||++++++|.    +....|+||||+ +++|.+++.+.+ ..+++..++.++.|++.||.|||
T Consensus       108 ~~~E~~il~~~-~hp--~Iv~l~~~~~----~~~~~~lVmE~~~gg~L~~~l~~~~-~~l~~~~~~~~~~qi~~aL~~LH  179 (412)
T 2vd5_A          108 FREERDVLVNG-DRR--WITQLHFAFQ----DENYLYLVMEYYVGGDLLTLLSKFG-ERIPAEMARFYLAEIVMAIDSVH  179 (412)
T ss_dssp             HHHHHHHHHHS-CTT--TBCCEEEEEE----CSSEEEEEECCCCSCBHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc-CCC--CeeeEEEEEe----eCCEEEEEEcCCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHH
Confidence            45678888777 455  9999999999    677999999999 999999998754 35999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccC--CCCCCCCccchhhHHHHhhhhc-cCCCCCCCcchhhH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD--QQSSSKTKSKIFCEILEQCRLN-QDFRLDPRVDPTSI  161 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~--~~~~~~~~~~~ape~~~~~~~~-~~~~~~~~~Diwsl  161 (202)
                      +. ||+||||||+|||++.++.  +||+|||+++.......  ....+||+.|+|||++...... ....++.++|+||+
T Consensus       180 ~~-giiHrDLKp~NILld~~g~--vkL~DFGla~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSl  256 (412)
T 2vd5_A          180 RL-GYVHRDIKPDNILLDRCGH--IRLADFGSCLKLRADGTVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWAL  256 (412)
T ss_dssp             HT-TEECCCCSGGGEEECTTSC--EEECCCTTCEECCTTSCEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHH
T ss_pred             HC-CeeecccCHHHeeecCCCC--EEEeechhheeccCCCccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHH
Confidence            96 9999999999999998887  99999999987654332  2245899999999999853211 12347889999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCC
Q psy320          162 KMYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      |+.      +..+..|.++|...
T Consensus       257 Gvi------lyelltG~~Pf~~~  273 (412)
T 2vd5_A          257 GVF------AYEMFYGQTPFYAD  273 (412)
T ss_dssp             HHH------HHHHHHSSCTTCCS
T ss_pred             hHH------HHHHHhCCCCCCCC
Confidence            873      23555577777543

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.97  E-value=2.8e-30  Score=202.68  Aligned_cols=158  Identities=22%  Similarity=0.260  Sum_probs=130.5

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ....+|+++++.+ +||  ||++++++|.    .....++||||+ +++|.+++...  +.+++..+..++.|++.||.|
T Consensus        59 ~~~~~E~~~l~~l-~hp--~iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~al~~  129 (326)
T 2y0a_A           59 EDIEREVSILKEI-QHP--NVITLHEVYE----NKTDVILILELVAGGELFDFLAEK--ESLTEEEATEFLKQILNGVYY  129 (326)
T ss_dssp             HHHHHHHHHHHHC-CCT--TBCCEEEEEE----CSSEEEEEEECCCSCBHHHHHTTS--SCCBHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CCCcEEEEEE----eCCEEEEEEEcCCCCCHHHHHHhc--CCcCHHHHHHHHHHHHHHHHH
Confidence            4467899999998 455  9999999998    577999999999 89999998654  459999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCc--ceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHV--YIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~--~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      ||+. |++||||||+||+++.++.  ..+||+|||.++............+++.|+|||++..      ..++.++|+||
T Consensus       130 lH~~-~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~Diws  202 (326)
T 2y0a_A          130 LHSL-QIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNY------EPLGLEADMWS  202 (326)
T ss_dssp             HHHT-TEECCCCCGGGEEESCSSSSSCCEEECCCTTCEECCTTSCCCCCCSCTTTCCHHHHTT------CCCCTHHHHHH
T ss_pred             HHHC-CeEcCCCCHHHEEEecCCCCCCCEEEEECCCCeECCCCCccccccCCcCcCCceeecC------CCCCcHHHHHH
Confidence            9996 9999999999999987651  2399999999988754444445679999999999873      34788999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCC
Q psy320          161 IKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       161 l~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +|+..      ..+..|.++|..
T Consensus       203 lG~il------~~ll~g~~pf~~  219 (326)
T 2y0a_A          203 IGVIT------YILLSGASPFLG  219 (326)
T ss_dssp             HHHHH------HHHHHSCCSSCC
T ss_pred             HHHHH------HHHHHCcCCCCC
Confidence            98732      255557777753

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.97  E-value=3.6e-30  Score=200.80  Aligned_cols=159  Identities=21%  Similarity=0.232  Sum_probs=129.4

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ..+.+|+++++++ +||  ||+++++++.    ++...++||||+.++|.+++.... +++++..++.++.|++.||.||
T Consensus        64 ~~~~~E~~~l~~l-~hp--~iv~~~~~~~----~~~~~~lv~e~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~L  135 (311)
T 3niz_A           64 STAIREISLLKEL-HHP--NIVSLIDVIH----SERCLTLVFEFMEKDLKKVLDENK-TGLQDSQIKIYLYQLLRGVAHC  135 (311)
T ss_dssp             HHHHHHHHHHHHC-CCT--TBCCEEEEEC----CSSCEEEEEECCSEEHHHHHHTCT-TCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc-CCC--CEeeeeeEEc----cCCEEEEEEcCCCCCHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHH
Confidence            3456788888888 455  9999999998    567899999999889998887654 4599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |+. |++||||||+|||++.++.  +||+|||.++...... ......+++.|+|||.+..     ...++.++|+||+|
T Consensus       136 H~~-~ivH~Dikp~NIl~~~~~~--~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~-----~~~~~~~~DiwslG  207 (311)
T 3niz_A          136 HQH-RILHRDLKPQNLLINSDGA--LKLADFGLARAFGIPVRSYTHEVVTLWYRAPDVLMG-----SKKYSTSVDIWSIG  207 (311)
T ss_dssp             HHT-TEECCCCCGGGEEECTTCC--EEECCCTTCEETTSCCC---CCCCCCTTCCHHHHTT-----CCSCCTHHHHHHHH
T ss_pred             HHC-CcccCCCchHhEEECCCCC--EEEccCcCceecCCCcccccCCcccCCcCCHHHhcC-----CCCCCchHHhHHHH
Confidence            996 9999999999999998877  9999999998765332 2224578999999999873     23467899999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      +.      +-.+..|.++|...
T Consensus       208 ~i------l~~ll~g~~pf~~~  223 (311)
T 3niz_A          208 CI------FAEMITGKPLFPGV  223 (311)
T ss_dssp             HH------HHHHHHSSCSCCCS
T ss_pred             HH------HHHHHhCCCCCCCC
Confidence            73      33556688888643

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.97  E-value=2.2e-30  Score=201.64  Aligned_cols=143  Identities=15%  Similarity=0.228  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+++++++ +||  ||+++++++.    .+...++||||+ +++|.+++.... +.+++..+..++.|++.||.||
T Consensus        53 ~~~~E~~~l~~l-~hp--~iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~al~~l  124 (310)
T 3s95_A           53 TFLKEVKVMRCL-EHP--NVLKFIGVLY----KDKRLNFITEYIKGGTLRGIIKSMD-SQYPWSQRVSFAKDIASGMAYL  124 (310)
T ss_dssp             HHHHHHHHHTTC-CCT--TBCCEEEEEE----ETTEEEEEEECCTTCBHHHHHHHCC-TTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCc--CcccEEEEEe----cCCeeEEEEEecCCCcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHH
Confidence            456788888777 454  9999999999    466899999999 899999998744 4599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC---------------CCCCCccchhhHHHHhhhhcc
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ---------------SSSKTKSKIFCEILEQCRLNQ  148 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~---------------~~~~~~~~~ape~~~~~~~~~  148 (202)
                      |++ |++|+||||+||+++.++.  +||+|||.++.........               ...+|+.|+|||.+..     
T Consensus       125 H~~-~ivH~dlkp~Nil~~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----  196 (310)
T 3s95_A          125 HSM-NIIHRDLNSHNCLVRENKN--VVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMING-----  196 (310)
T ss_dssp             HHT-TEECSCCSTTSEEECTTSC--EEECCCTTCEECC--------------------CCCCSCGGGCCHHHHTT-----
T ss_pred             HhC-CccCCCCCcCeEEECCCCC--EEEeecccceecccccccccccccccccccccccccCCCcceeCHHHhcC-----
Confidence            996 9999999999999998877  9999999998764322211               3478999999999974     


Q ss_pred             CCCCCCCcchhhHHHH
Q psy320          149 DFRLDPRVDPTSIKMY  164 (202)
Q Consensus       149 ~~~~~~~~Diwsl~~~  164 (202)
                       ..++.++|+||+|+.
T Consensus       197 -~~~~~~~Di~slG~~  211 (310)
T 3s95_A          197 -RSYDEKVDVFSFGIV  211 (310)
T ss_dssp             -CCCCTHHHHHHHHHH
T ss_pred             -CCCCcHHHHHHHHHH
Confidence             347889999999863

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=8.8e-31  Score=205.20  Aligned_cols=158  Identities=16%  Similarity=0.164  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++.+ +||  ||++++++|.    +....++||||+ +++|.+++.... ..+++..+..++.|++.||.||
T Consensus        47 ~~~~E~~~l~~l-~hp--nIv~~~~~~~----~~~~~~lv~e~~~g~~L~~~l~~~~-~~~~~~~~~~i~~qi~~al~~l  118 (321)
T 1tki_A           47 LVKKEISILNIA-RHR--NILHLHESFE----SMEELVMIFEFISGLDIFERINTSA-FELNEREIVSYVHQVCEALQFL  118 (321)
T ss_dssp             HHHHHHHHHHHS-CCT--TBCCEEEEEE----ETTEEEEEECCCCCCBHHHHHTSSS-CCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCC--CCCeEeEEEe----cCCEEEEEEEeCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHH
Confidence            356789988888 555  9999999998    466899999999 889999986543 3599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |+. |++||||||+|||++.+....+||+|||.+.............+++.|+|||.+....      ++.++|+||+|+
T Consensus       119 H~~-givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~------~~~~~DiwslG~  191 (321)
T 1tki_A          119 HSH-NIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDV------VSTATDMWSLGT  191 (321)
T ss_dssp             HHT-TEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCEEEEEESCGGGSCHHHHTTCE------ECHHHHHHHHHH
T ss_pred             HHC-CCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCCCccccccCChhhcCcHHhcCCC------CCchhhHHHHHH
Confidence            996 9999999999999987433359999999998875433333457899999999997433      677999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~  183 (202)
                      ..+      .+..|.++|..
T Consensus       192 il~------~ll~g~~pf~~  205 (321)
T 1tki_A          192 LVY------VLLSGINPFLA  205 (321)
T ss_dssp             HHH------HHHHSSCTTCC
T ss_pred             HHH------HHHhCCCCCcC
Confidence            322      44456666643

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.97  E-value=2.7e-30  Score=204.66  Aligned_cols=140  Identities=17%  Similarity=0.173  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++.+ +  ||||++++++|.    +....|+||||+ +++|.+++.+..  .+++..++.++.|++.||.||
T Consensus        87 ~~~~E~~~l~~l-~--hp~iv~~~~~~~----~~~~~~lv~e~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~L  157 (350)
T 1rdq_E           87 HTLNEKRILQAV-N--FPFLVKLEFSFK----DNSNLYMVMEYVAGGEMFSHLRRIG--RFSEPHARFYAAQIVLTFEYL  157 (350)
T ss_dssp             HHHHHHHHHTTC-C--CTTBCCEEEEEE----CSSEEEEEEECCTTCBHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-C--CCCCCeEEEEEE----cCCEEEEEEcCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHH
Confidence            345677777666 4  459999999999    577999999999 999999998764  499999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |+. ||+||||||+|||++.++.  +||+|||.++....  .....+||+.|+|||++..      ..++.++|+||+|+
T Consensus       158 H~~-~ivHrDlkp~NIll~~~g~--~kL~DFg~a~~~~~--~~~~~~gt~~y~aPE~~~~------~~~~~~~DiwslG~  226 (350)
T 1rdq_E          158 HSL-DLIYRDLKPENLLIDQQGY--IQVTDFGFAKRVKG--RTWTLCGTPEALAPEIILS------KGYNKAVDWWALGV  226 (350)
T ss_dssp             HHT-TEECCCCSGGGEEECTTSC--EEECCCTTCEECSS--CBCCCEECGGGCCHHHHTT------CCBCTHHHHHHHHH
T ss_pred             HHC-CcccccCccceEEECCCCC--EEEcccccceeccC--CcccccCCccccCHHHhcC------CCCCCcCCEecccH
Confidence            996 9999999999999998877  99999999987642  2334679999999999973      34788999999986


Q ss_pred             H
Q psy320          164 Y  164 (202)
Q Consensus       164 ~  164 (202)
                      .
T Consensus       227 i  227 (350)
T 1rdq_E          227 L  227 (350)
T ss_dssp             H
T ss_pred             h
Confidence            3

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.97  E-value=3.3e-30  Score=199.50  Aligned_cols=155  Identities=19%  Similarity=0.244  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|++.++++ +  ||||+++++++.    .+...|+||||+ +++|.+++....  ++++..+..++.|++.||.||
T Consensus        57 ~~~~e~~~l~~l-~--hp~iv~~~~~~~----~~~~~~lv~e~~~g~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~l  127 (294)
T 4eqm_A           57 RFEREVHNSSQL-S--HQNIVSMIDVDE----EDDCYYLVMEYIEGPTLSEYIESHG--PLSVDTAINFTNQILDGIKHA  127 (294)
T ss_dssp             HHHHHHHHHTTC-C--BTTBCCEEEEEE----CSSEEEEEEECCCSCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-C--CCCCceEEEeee----eCCeEEEEEeCCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHH
Confidence            345677777666 3  559999999998    577999999999 889999998764  499999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC--CCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ--QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~--~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      |+. |++||||||+||+++.++.  ++|+|||.+.........  ....+++.|+|||.+..      ..++.++|+||+
T Consensus       128 H~~-~i~H~Dlkp~Nil~~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~Di~sl  198 (294)
T 4eqm_A          128 HDM-RIVHRDIKPQNILIDSNKT--LKIFDFGIAKALSETSLTQTNHVLGTVQYFSPEQAKG------EATDECTDIYSI  198 (294)
T ss_dssp             HHT-TCCCCCCCGGGEEECTTSC--EEECCCSSSTTC-------------CCSSCCHHHHHT------CCCCTTHHHHHH
T ss_pred             HHC-CcccCCCCHHHEEECCCCC--EEEEeCCCccccccccccccCccccCccccCHhHhcC------CCCCchHhHHHH
Confidence            996 9999999999999998877  999999999876543222  23468999999999984      336789999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCC
Q psy320          162 KMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      |+..      -.+..|..+|..
T Consensus       199 G~~l------~~ll~g~~pf~~  214 (294)
T 4eqm_A          199 GIVL------YEMLVGEPPFNG  214 (294)
T ss_dssp             HHHH------HHHHHSSCSSCS
T ss_pred             HHHH------HHHHhCCCCCCC
Confidence            8733      355568888754

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.97  E-value=6.2e-30  Score=212.48  Aligned_cols=159  Identities=21%  Similarity=0.229  Sum_probs=132.5

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK--FQPAPLVVAKIIVNQILEGLN   81 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~--~~~~~~~~~~~~~~qi~~~l~   81 (202)
                      ...+|+++++++ +||  ||++++++|.    .....|+||||+ +++|.+++....  ...+++..++.++.|++.||.
T Consensus       231 ~~~~E~~iL~~l-~hp--~Iv~l~~~~~----~~~~l~lVmE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~  303 (543)
T 3c4z_A          231 GAMVEKKILAKV-HSR--FIVSLAYAFE----TKTDLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLE  303 (543)
T ss_dssp             HHHHHHHHHHHC-CCT--TBCCEEEEEE----CSSEEEEEECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc-CCC--CEeeEEEEEe----eCCEEEEEEEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHH
Confidence            356788888888 455  9999999998    577999999999 899999987654  346999999999999999999


Q ss_pred             HHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC-CCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           82 HLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ-QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        82 ~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~-~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      |||+. ||+||||||+|||++.++.  +||+|||+++........ ...+||+.|+|||++..      ..++.++|+||
T Consensus       304 ~LH~~-gIvHrDLKP~NILl~~~g~--vkL~DFGla~~~~~~~~~~~~~~GT~~Y~APE~l~~------~~~~~~~DiwS  374 (543)
T 3c4z_A          304 HLHQR-NIIYRDLKPENVLLDDDGN--VRISDLGLAVELKAGQTKTKGYAGTPGFMAPELLLG------EEYDFSVDYFA  374 (543)
T ss_dssp             HHHHT-TEECCCCCGGGEEECTTSC--EEECCCTTCEECCTTCCCBCCCCSCTTTSCHHHHTT------CCBCTHHHHHH
T ss_pred             HHHHc-CCcccCCChHHEEEeCCCC--EEEeecceeeeccCCCcccccccCCccccChhhhcC------CCCChHHhcCc
Confidence            99996 9999999999999998887  999999999876543322 23589999999999984      34788999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCC
Q psy320          161 IKMYTTFCEILEQCRLNHQDFRPDP  185 (202)
Q Consensus       161 l~~~~~~~~~~~~~~~~~~~~~~~~  185 (202)
                      +|+.      +..++.|.++|....
T Consensus       375 lGvi------lyelltG~~PF~~~~  393 (543)
T 3c4z_A          375 LGVT------LYEMIAARGPFRARG  393 (543)
T ss_dssp             HHHH------HHHHHHSSCSSCCTT
T ss_pred             chHH------HHHHHhCCCCCCCCc
Confidence            9973      335666888887643

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.97  E-value=1.1e-29  Score=203.48  Aligned_cols=169  Identities=27%  Similarity=0.467  Sum_probs=137.4

Q ss_pred             hHHHHHHHHHHHHhc----CC-CccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQK----HP-SDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILE   78 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~----~~-h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~   78 (202)
                      ....+|+++++.++.    ++ |+||++++++|...+.++...|+||||++++|.+.+.....+++++..++.++.|++.
T Consensus        78 ~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~  157 (397)
T 1wak_A           78 ETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHICMVFEVLGHHLLKWIIKSNYQGLPLPCVKKIIQQVLQ  157 (397)
T ss_dssp             HHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEETTEEEEEEEECCCCCBHHHHHHHTTTSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecCCCCceEEEEEeccCccHHHHHHhcccCCCCHHHHHHHHHHHHH
Confidence            345689999999963    22 6799999999997776778999999999888888887765567999999999999999


Q ss_pred             HHHHHHhhCCccccCCCCCceeeecCCc-----------------------------------------------ceeEE
Q psy320           79 GLNHLHTKHNLVHTSIKPESIFFKADHV-----------------------------------------------YIMTL  111 (202)
Q Consensus        79 ~l~~lh~~~~ivH~dl~p~nil~~~~~~-----------------------------------------------~~~~l  111 (202)
                      ||.|||+++||+||||||+|||++.++.                                               ..++|
T Consensus       158 aL~~lH~~~givHrDikp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl  237 (397)
T 1wak_A          158 GLDYLHTKCRIIHTDIKPENILLSVNEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKI  237 (397)
T ss_dssp             HHHHHHHTTCEECCCCSGGGEEECCCHHHHHHHHHHHC---------------------CCTTSCCTTSGGGGGGCCEEE
T ss_pred             HHHHHHHhCCEecCCCCHHHeeEeccchhhhhhhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEe
Confidence            9999999449999999999999986641                                               24999


Q ss_pred             eecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCCCCC
Q psy320          112 INIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLNHQDFRPDPR  186 (202)
Q Consensus       112 ~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~~~~~  186 (202)
                      +|||.+.....  ......+|+.|+|||++...      .++.++|+||+|+.      +..+..|.++|.+...
T Consensus       238 ~DfG~a~~~~~--~~~~~~gt~~y~aPE~~~~~------~~~~~~DiwslG~i------l~elltg~~pf~~~~~  298 (397)
T 1wak_A          238 ADLGNACWVHK--HFTEDIQTRQYRSLEVLIGS------GYNTPADIWSTACM------AFELATGDYLFEPHSG  298 (397)
T ss_dssp             CCGGGCEETTB--CSCSCCSCGGGCCHHHHHTS------CCCTHHHHHHHHHH------HHHHHHSSCSCCCCCC
T ss_pred             ccccccccccc--cCccCCCCCcccCChhhcCC------CCCcHHHHHHHHHH------HHHHhhCCCCCCCCcc
Confidence            99999987643  23345789999999999843      37889999999973      3356669998876543

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.97  E-value=2.5e-30  Score=211.94  Aligned_cols=158  Identities=20%  Similarity=0.245  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEec--CCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTG--INGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~--~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ...+|+++++.+ +||  ||++++++|...+  ......|+||||++++|.+.+..    .+++..++.++.|++.||.|
T Consensus       107 ~~~~E~~~l~~l-~hp--nIv~l~~~~~~~~~~~~~~~~~lv~E~~~~~l~~~~~~----~l~~~~~~~~~~qil~aL~~  179 (464)
T 3ttj_A          107 RAYRELVLMKCV-NHK--NIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQM----ELDHERMSYLLYQMLCGIKH  179 (464)
T ss_dssp             HHHHHHHHHHHC-CCT--TBCCCSEEECSCCSTTTCCEEEEEEECCSEEHHHHHTS----CCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCC--CCCcEEEEEccCCccccCCeEEEEEeCCCCCHHHHHhh----cCCHHHHHHHHHHHHHHHHH
Confidence            455788888888 555  9999999997432  13468899999997778777743    39999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      ||+. ||+||||||+|||++.++.  +||+|||+|+............+|+.|+|||++..      ..|+.++|+||+|
T Consensus       180 lH~~-~iiHrDlkp~NIll~~~~~--~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~DiwSlG  250 (464)
T 3ttj_A          180 LHSA-GIIHRDLKPSNIVVKSDCT--LKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILG------MGYKENVDIWSVG  250 (464)
T ss_dssp             HHHT-TCCCCCCCGGGEEECTTSC--EEECCCCCC-----CCCC----CCCTTCCHHHHTT------CCCCTTHHHHHHH
T ss_pred             HHHC-CcccCCCChHhEEEeCCCC--EEEEEEEeeeecCCCcccCCCcccccccCHHHHcC------CCCCHHHHHHHHH
Confidence            9996 9999999999999998877  99999999988754444445689999999999984      3488899999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      +.      +..++.|.++|...
T Consensus       251 ~i------l~ell~g~~pF~g~  266 (464)
T 3ttj_A          251 CI------MGEMVRHKILFPGR  266 (464)
T ss_dssp             HH------HHHHHHSSCSSCCS
T ss_pred             HH------HHHHHhCCCCCCCC
Confidence            73      33556688888643

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.97  E-value=7.7e-30  Score=202.91  Aligned_cols=150  Identities=11%  Similarity=-0.007  Sum_probs=121.6

Q ss_pred             CCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCce
Q psy320           20 PSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESI   99 (202)
Q Consensus        20 ~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~ni   99 (202)
                      .|+||+++++++........+.|+||||++++|.+++.... +.+++..+..++.|++.||.|||+. ||+||||||+||
T Consensus       106 ~h~~iv~~~~~~~~~~~~~~~~~lv~e~~g~~L~~~~~~~~-~~l~~~~~~~i~~qi~~~l~~lH~~-~iiHrDlkp~Ni  183 (364)
T 3op5_A          106 KYLGVPKYWGSGLHDKNGKSYRFMIMDRFGSDLQKIYEANA-KRFSRKTVLQLSLRILDILEYIHEH-EYVHGDIKASNL  183 (364)
T ss_dssp             SCCCSCCEEEEEEEEETTEEEEEEEEECEEEEHHHHHHHTT-SCCCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGE
T ss_pred             cCCCCCeEEeeeeeccCCcceEEEEEeCCCCCHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHC-CeEEecCCHHHE
Confidence            36699999999987654557899999999999999997753 5699999999999999999999996 999999999999


Q ss_pred             eeecCCcceeEEeecccccccccccCC--------CCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHHHHHHHH
Q psy320          100 FFKADHVYIMTLINIQQATTHQECHDQ--------QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTTFCEIL  171 (202)
Q Consensus       100 l~~~~~~~~~~l~Dfg~a~~~~~~~~~--------~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~~~~~~~  171 (202)
                      |++.+....+||+|||+++........        ....+|+.|+|||.+...      .++.++|+||+|+..      
T Consensus       184 ll~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~~Di~slG~~l------  251 (364)
T 3op5_A          184 LLNYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGV------APSRRGDLEILGYCM------  251 (364)
T ss_dssp             EEESSCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTC------CCCHHHHHHHHHHHH------
T ss_pred             EEecCCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCC------CCCchhhHHHHHHHH------
Confidence            999333334999999999876543221        123599999999998733      378899999999733      


Q ss_pred             HHHHhcCCCCCC
Q psy320          172 EQCRLNHQDFRP  183 (202)
Q Consensus       172 ~~~~~~~~~~~~  183 (202)
                      -.+..|..+|..
T Consensus       252 ~el~~g~~Pf~~  263 (364)
T 3op5_A          252 IQWLTGHLPWED  263 (364)
T ss_dssp             HHHHHSCCTTGG
T ss_pred             HHHHhCCCCccc
Confidence            355558888864

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.97  E-value=5.8e-30  Score=205.23  Aligned_cols=160  Identities=17%  Similarity=0.190  Sum_probs=131.2

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++.+ +||  ||++++++|.    .+...|+||||+ +++|.+++.....+.+++..++.++.|++.||.||
T Consensus        72 ~~~~E~~~l~~l-~h~--niv~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~L  144 (389)
T 3gni_B           72 FLQGELHVSKLF-NHP--NIVPYRATFI----ADNELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYI  144 (389)
T ss_dssp             HHHHHHHHHHHC-CCT--TBCCEEEEEE----ETTEEEEEEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCC--CCCcEeEEEE----ECCEEEEEEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHH
Confidence            455688888888 455  9999999999    466899999999 89999999887556699999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc--------CCCCCCCCccchhhHHHHhhhhccCCCCCCC
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH--------DQQSSSKTKSKIFCEILEQCRLNQDFRLDPR  155 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~--------~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~  155 (202)
                      |+. ||+||||||+|||++.++.  ++|+|||.+......+        ......+++.|+|||++....    ..++.+
T Consensus       145 H~~-~ivHrDlkp~NIll~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~~~  217 (389)
T 3gni_B          145 HHM-GYVHRSVKASHILISVDGK--VYLSGLRSNLSMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNL----QGYDAK  217 (389)
T ss_dssp             HHT-TEECCCCSGGGEEECTTCC--EEECCGGGCEECEETTEECSCBCCCCTTCTTTGGGSCHHHHSTTS----SCBCTH
T ss_pred             HhC-CeecCCCCHHHEEEcCCCC--EEEcccccceeeccccccccccccccccccccccccCHHHHhccC----CCCCcH
Confidence            996 9999999999999998876  9999999987653322        112347888999999997421    347889


Q ss_pred             cchhhHHHHHHHHHHHHHHHhcCCCCCCC
Q psy320          156 VDPTSIKMYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       156 ~Diwsl~~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      +|+||+|+.      +..+..|.++|...
T Consensus       218 ~DiwslG~i------l~el~~g~~pf~~~  240 (389)
T 3gni_B          218 SDIYSVGIT------ACELANGHVPFKDM  240 (389)
T ss_dssp             HHHHHHHHH------HHHHHHSSCTTTTC
T ss_pred             hHHHHHHHH------HHHHHHCCCCCCCC
Confidence            999999973      33566688888653

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.97  E-value=6.1e-30  Score=203.44  Aligned_cols=158  Identities=15%  Similarity=0.172  Sum_probs=120.8

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ....+|+..++.+ +||  ||++++++|.    .+...|+||||+ +++|.+++....  ++++..++.++.|++.||.|
T Consensus        61 ~~~~~E~~~l~~l-~hp--niv~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~ql~~~L~~  131 (361)
T 3uc3_A           61 ENVQREIINHRSL-RHP--NIVRFKEVIL----TPTHLAIIMEYASGGELYERICNAG--RFSEDEARFFFQQLLSGVSY  131 (361)
T ss_dssp             HHHHHHHHHHHHC-CCT--TBCCEEEEEE----CSSEEEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CCCcEEEEEe----eCCEEEEEEEeCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHH
Confidence            4567889888888 455  9999999998    577999999999 999999997764  49999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCC-CcchhhH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDP-RVDPTSI  161 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~-~~Diwsl  161 (202)
                      ||+. |++||||||+||+++.++...+||+|||.++............+|+.|+|||.+...      .++. ++|+||+
T Consensus       132 LH~~-~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~~~Diwsl  204 (361)
T 3uc3_A          132 CHSM-QICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLRQ------EYDGKIADVWSC  204 (361)
T ss_dssp             HHHT-TCCSCCCCGGGEEECSSSSCCEEECCCCCC---------------CTTSCHHHHHCS------SCCHHHHHHHHH
T ss_pred             HHHC-CcccCCCCHHHEEEcCCCCceEEEeecCccccccccCCCCCCcCCCCcCChhhhcCC------CCCCCeeeeehh
Confidence            9996 999999999999998766556999999999865444444456799999999999733      3544 4899999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCC
Q psy320          162 KMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      |+..      ..+..|.++|..
T Consensus       205 G~il------~ell~g~~Pf~~  220 (361)
T 3uc3_A          205 GVTL------YVMLVGAYPFED  220 (361)
T ss_dssp             HHHH------HHHHHSSCSCC-
T ss_pred             HHHH------HHHHhCCCCCCC
Confidence            8733      355568777764

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.97  E-value=4.8e-30  Score=201.45  Aligned_cols=154  Identities=21%  Similarity=0.203  Sum_probs=121.0

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+++++.+ +||  ||++++++|.    .....|+||||+ +++|.+++....  .+++..+..++.|++.||.|||
T Consensus        68 ~~~E~~~l~~l-~hp--~iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~al~~lH  138 (327)
T 3a62_A           68 TKAERNILEEV-KHP--FIVDLIYAFQ----TGGKLYLILEYLSGGELFMQLEREG--IFMEDTACFYLAEISMALGHLH  138 (327)
T ss_dssp             ---HHHHHHHC-CCT--TBCCEEEEEE----CSSCEEEEEECCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCC--CccceeEEEE----cCCEEEEEEeCCCCCcHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHH
Confidence            45688888888 455  9999999998    567899999999 899999998764  4999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccC-CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD-QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~-~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      ++ |++||||||+|||++.++.  +||+|||.++....... .....+++.|+|||.+..      ..++.++|+||+|+
T Consensus       139 ~~-~ivH~Dlkp~Nill~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~DiwslG~  209 (327)
T 3a62_A          139 QK-GIIYRDLKPENIMLNHQGH--VKLTDFGLCKESIHDGTVTHTFCGTIEYMAPEILMR------SGHNRAVDWWSLGA  209 (327)
T ss_dssp             HT-TCCCCCCCTTTEEECTTSC--EEECCCSCC----------CTTSSCCTTSCHHHHTT------SCCCTHHHHHHHHH
T ss_pred             hC-CEEcccCCHHHeEECCCCc--EEEEeCCcccccccCCccccccCCCcCccCHhhCcC------CCCCCcccchhHHH
Confidence            96 9999999999999998877  99999999986543322 234578999999999973      33778999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~  183 (202)
                      ..+      .+..|.++|..
T Consensus       210 il~------el~~g~~pf~~  223 (327)
T 3a62_A          210 LMY------DMLTGAPPFTG  223 (327)
T ss_dssp             HHH------HHHHSSCSCCC
T ss_pred             HHH------HHHHCCCCCCC
Confidence            322      44446666643

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.97  E-value=8.8e-30  Score=198.56  Aligned_cols=139  Identities=17%  Similarity=0.187  Sum_probs=113.7

Q ss_pred             HHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhC
Q psy320            8 NLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKH   87 (202)
Q Consensus         8 ~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~   87 (202)
                      .|+..+..+.+|  +||++++++|.    .+...|+||||++++|.+++.... +.+++..++.++.|++.||.|||+. 
T Consensus       105 ~e~~~~~~~~~h--~~iv~l~~~~~----~~~~~~lv~e~~~~~L~~~~~~~~-~~l~~~~~~~i~~qi~~aL~~LH~~-  176 (311)
T 3p1a_A          105 AEVGSHEKVGQH--PCCVRLEQAWE----EGGILYLQTELCGPSLQQHCEAWG-ASLPEAQVWGYLRDTLLALAHLHSQ-  176 (311)
T ss_dssp             HHHHHHHHHCCC--TTBCCEEEEEE----ETTEEEEEEECCCCBHHHHHHHHC-SCCCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHhcCC--CcEEEEEEEEE----eCCEEEEEEeccCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC-
Confidence            344444444344  59999999998    466999999999999999987764 4699999999999999999999996 


Q ss_pred             CccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           88 NLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        88 ~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      ||+||||||+|||++.++.  +||+|||.+.............+|+.|+|||.+..       .++.++|+||+|+
T Consensus       177 ~ivH~Dikp~NIll~~~~~--~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~-------~~~~~~DiwslG~  243 (311)
T 3p1a_A          177 GLVHLDVKPANIFLGPRGR--CKLGDFGLLVELGTAGAGEVQEGDPRYMAPELLQG-------SYGTAADVFSLGL  243 (311)
T ss_dssp             TEECCCCSGGGEEECGGGC--EEECCCTTCEECC------CCCCCGGGCCGGGGGT-------CCSTHHHHHHHHH
T ss_pred             CEecCCCCHHHEEECCCCC--EEEccceeeeecccCCCCcccCCCccccCHhHhcC-------CCCchhhHHHHHH
Confidence            9999999999999988776  99999999987755444445679999999998762       3778999999975

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.97  E-value=6.7e-30  Score=204.88  Aligned_cols=159  Identities=19%  Similarity=0.206  Sum_probs=127.4

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ...+|+.+++.+.+||  ||++++++|...  +....|+||||++++|.+++...   .+++..+..++.|++.||.|||
T Consensus        54 ~~~~E~~~l~~l~~h~--niv~l~~~~~~~--~~~~~~lv~e~~~~~L~~~~~~~---~~~~~~~~~i~~qi~~~L~~LH  126 (388)
T 3oz6_A           54 RTFREIMILTELSGHE--NIVNLLNVLRAD--NDRDVYLVFDYMETDLHAVIRAN---ILEPVHKQYVVYQLIKVIKYLH  126 (388)
T ss_dssp             HHHHHHHHHHHTTTCT--TBCCEEEEEECT--TSSCEEEEEECCSEEHHHHHHHT---CCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCC--CCCeeeeEEecC--CCCEEEEEecccCcCHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHH
Confidence            3457888888885566  999999999742  34579999999988999999763   4999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeeccccccccccc----------------------CCCCCCCCccchhhHHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH----------------------DQQSSSKTKSKIFCEILE  142 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~----------------------~~~~~~~~~~~~ape~~~  142 (202)
                      +. ||+||||||+|||++.++.  +||+|||+|+......                      ......+|+.|+|||++.
T Consensus       127 ~~-~ivHrDlkp~NIll~~~~~--~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~  203 (388)
T 3oz6_A          127 SG-GLLHRDMKPSNILLNAECH--VKVADFGLSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILL  203 (388)
T ss_dssp             HT-TEECCCCCGGGEEECTTCC--EEECCCTTCEESSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHT
T ss_pred             hC-CEEeCCCCHHHeEEcCCCC--EEecCCcccccccccccccccccccccccccccccccccccCCcccCCcCCHHHhc
Confidence            96 9999999999999998877  9999999998653210                      111347999999999987


Q ss_pred             hhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCCC
Q psy320          143 QCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       143 ~~~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      .     ...++.++|+||+|+.      +..++.|.++|...
T Consensus       204 ~-----~~~~~~~~DiwSlG~i------l~ell~g~~pf~~~  234 (388)
T 3oz6_A          204 G-----STKYTKGIDMWSLGCI------LGEILCGKPIFPGS  234 (388)
T ss_dssp             T-----CCCCCTHHHHHHHHHH------HHHHHHSSCSCCCS
T ss_pred             C-----CCCCCChhhHHHHHHH------HHHHHhCCCCCCCC
Confidence            3     2347889999999973      33566688888654

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.97  E-value=3.9e-30  Score=201.83  Aligned_cols=160  Identities=20%  Similarity=0.291  Sum_probs=113.9

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ....+|+..++.+.+||  ||++++++|.    ++...|+||||+ +++|.+++...  +.+++..+..++.|++.||.|
T Consensus        50 ~~~~~e~~~l~~l~~h~--niv~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~  121 (325)
T 3kn6_A           50 ANTQKEITALKLCEGHP--NIVKLHEVFH----DQLHTFLVMELLNGGELFERIKKK--KHFSETEASYIMRKLVSAVSH  121 (325)
T ss_dssp             HHHHHHHHHHHHTTTCT--TBCCEEEEEE----CSSEEEEEECCCCSCBHHHHHHHC--SCCCHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhcCCC--CeeEEEEEEE----cCCEEEEEEEccCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHH
Confidence            34567888888886566  9999999998    677999999999 88999999876  459999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCC-cceeEEeecccccccccccC-CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           83 LHTKHNLVHTSIKPESIFFKADH-VYIMTLINIQQATTHQECHD-QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~-~~~~~l~Dfg~a~~~~~~~~-~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      ||+. |++||||||+|||++.++ ...++|+|||.++....... .....+++.|+|||.+..      ..++.++|+||
T Consensus       122 LH~~-~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~------~~~~~~~Diws  194 (325)
T 3kn6_A          122 MHDV-GVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPLKTPCFTLHYAAPELLNQ------NGYDESCDLWS  194 (325)
T ss_dssp             HHHT-TEECCCCCGGGEEEEC----CEEEECCCTTCEECCC----------------------------CCCCHHHHHHH
T ss_pred             HHHC-CCeecCCCHHHEEEecCCCcccEEEeccccceecCCCCCcccccCCCcCccCHHHhcC------CCCCCccchHH
Confidence            9996 999999999999998764 22499999999987643322 224568999999999873      34788999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCC
Q psy320          161 IKMYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       161 l~~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      +|+.      +-.+..|.++|...
T Consensus       195 lG~i------l~~ll~g~~pf~~~  212 (325)
T 3kn6_A          195 LGVI------LYTMLSGQVPFQSH  212 (325)
T ss_dssp             HHHH------HHHHHHSSCTTC--
T ss_pred             HHHH------HHHHHhCCCCCCCC
Confidence            9873      33555588887653

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.97  E-value=3.2e-29  Score=199.55  Aligned_cols=162  Identities=18%  Similarity=0.257  Sum_probs=133.5

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+.+++++.+||  ||+++++++.    .....|+||||+ +++|.+++....  .+++..+..++.|++.||.||
T Consensus       145 ~~~~E~~~l~~l~~hp--~iv~~~~~~~----~~~~~~lv~e~~~g~~L~~~l~~~~--~l~~~~~~~i~~qi~~~L~~L  216 (365)
T 2y7j_A          145 ATRRETHILRQVAGHP--HIITLIDSYE----SSSFMFLVFDLMRKGELFDYLTEKV--ALSEKETRSIMRSLLEAVSFL  216 (365)
T ss_dssp             HHHHHHHHHHHHTTCT--TBCCEEEEEE----BSSEEEEEECCCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCC--CEeEEEEEEe----eCCEEEEEEEeCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHH
Confidence            4567888888886566  9999999998    567999999999 889999998763  499999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |+. |++|+||||+||+++.++.  ++|+|||.+.............+++.|+|||.+..........++.++|+||+|+
T Consensus       217 H~~-gi~H~Dlkp~NIl~~~~~~--ikl~DfG~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~  293 (365)
T 2y7j_A          217 HAN-NIVHRDLKPENILLDDNMQ--IRLSDFGFSCHLEPGEKLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGV  293 (365)
T ss_dssp             HHT-TEECSCCSGGGEEECTTCC--EEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHH
T ss_pred             HhC-CeecCCCCHHHEEECCCCC--EEEEecCcccccCCCcccccCCCCCCccChhhccccccccCcCCCchhhHHhHHH
Confidence            996 9999999999999998876  9999999998776444444568999999999987553223345778999999987


Q ss_pred             HHHHHHHHHHHHhcCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~  183 (202)
                      ..      ..+..|.++|..
T Consensus       294 il------~ell~g~~pf~~  307 (365)
T 2y7j_A          294 IL------FTLLAGSPPFWH  307 (365)
T ss_dssp             HH------HHHHHSSCSSCC
T ss_pred             HH------HHHHHCCCCCCC
Confidence            33      355557777643

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.97  E-value=2.7e-30  Score=207.18  Aligned_cols=158  Identities=20%  Similarity=0.231  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++.+ +|  |||++++++|.    .....++||||+ +++|.+++.... ..+++..+..++.|++.||.||
T Consensus        94 ~~~~E~~il~~l-~h--pnIv~~~~~~~----~~~~~~lv~E~~~gg~L~~~l~~~~-~~l~~~~~~~i~~qi~~aL~~L  165 (387)
T 1kob_A           94 TVKNEISIMNQL-HH--PKLINLHDAFE----DKYEMVLILEFLSGGELFDRIAAED-YKMSEAEVINYMRQACEGLKHM  165 (387)
T ss_dssp             HHHHHHHHHTTC-CS--TTBCCEEEEEE----CSSEEEEEEECCCCCBHHHHTTCTT-CCBCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CC--cCCCeEEEEEE----eCCEEEEEEEcCCCCcHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHH
Confidence            355788888777 45  49999999998    577999999999 899999886543 4599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |+. |++||||||+|||++.++...+||+|||+++............+|+.|+|||++..      ..++.++|+||+|+
T Consensus       166 H~~-givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~DiwSlG~  238 (387)
T 1kob_A          166 HEH-SIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDR------EPVGFYTDMWAIGV  238 (387)
T ss_dssp             HHT-TEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSCEEEECSSGGGCCHHHHTT------CCBCHHHHHHHHHH
T ss_pred             HhC-CeeecccchHHeEEecCCCCceEEEecccceecCCCcceeeeccCCCccCchhccC------CCCCCcccEeeHhH
Confidence            996 99999999999999865444599999999988754333334579999999999873      33777999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~  183 (202)
                      ..+      .++.|.++|..
T Consensus       239 il~------elltg~~Pf~~  252 (387)
T 1kob_A          239 LGY------VLLSGLSPFAG  252 (387)
T ss_dssp             HHH------HHHHSCCSSCC
T ss_pred             HHH------HHHhCCCCCCC
Confidence            322      44446666643

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.97  E-value=1.5e-29  Score=200.77  Aligned_cols=161  Identities=23%  Similarity=0.267  Sum_probs=131.2

Q ss_pred             HHHHHHHHHHHHhcC--CCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKH--PSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~--~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ....|+.+++.++..  .||||++++++|.    .....|+||||++++|.+++.....+++++..++.++.|++.||.|
T Consensus        77 ~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~----~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~  152 (360)
T 3llt_A           77 SAKIEADILKKIQNDDINNNNIVKYHGKFM----YYDHMCLIFEPLGPSLYEIITRNNYNGFHIEDIKLYCIEILKALNY  152 (360)
T ss_dssp             HHHHHHHHHHHTCCCSTTGGGBCCEEEEEE----ETTEEEEEECCCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhcccCCCCCCeecccceee----ECCeeEEEEcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence            455688888888532  2679999999998    4568999999999999999988776679999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecC-----------------------CcceeEEeecccccccccccCCCCCCCCccchhhH
Q psy320           83 LHTKHNLVHTSIKPESIFFKAD-----------------------HVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCE  139 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~-----------------------~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape  139 (202)
                      ||+. ||+||||||+|||++.+                       ....+||+|||.+.....  ......+++.|+|||
T Consensus       153 LH~~-~ivHrDlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~--~~~~~~gt~~y~aPE  229 (360)
T 3llt_A          153 LRKM-SLTHTDLKPENILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSD--YHGSIINTRQYRAPE  229 (360)
T ss_dssp             HHHT-TEECSCCSGGGEEESCTTCCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTS--CCCSCCSCGGGCCHH
T ss_pred             HHHC-CeeeCCCCcccEEEccccccccccchhcccccccccccccCCCCEEEEeccCceecCC--CCcCccCcccccCcH
Confidence            9996 99999999999999751                       123499999999986542  223467899999999


Q ss_pred             HHHhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCCC
Q psy320          140 ILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       140 ~~~~~~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      ++..      ..++.++|+||+|+.      +-.+..|.++|...
T Consensus       230 ~~~~------~~~~~~~DiwslG~i------l~ell~g~~pf~~~  262 (360)
T 3llt_A          230 VILN------LGWDVSSDMWSFGCV------LAELYTGSLLFRTH  262 (360)
T ss_dssp             HHTT------CCCCTTHHHHHHHHH------HHHHHHSSCSCCCS
T ss_pred             HHcC------CCCCCccchHHHHHH------HHHHHHCCCCCCCC
Confidence            9984      347889999999973      33566688888653

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.97  E-value=8.9e-30  Score=216.91  Aligned_cols=154  Identities=15%  Similarity=0.086  Sum_probs=125.6

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|.+++..+.+|  |+|+.++++|.    +...+|+||||+ +++|.+++....  ++++..++.++.|++.||.|||
T Consensus       388 ~~~E~~~l~~~~~~--~~i~~l~~~~~----~~~~~~lV~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH  459 (674)
T 3pfq_A          388 TMVEKRVLALPGKP--PFLTQLHSCFQ----TMDRLYFVMEYVNGGDLMYHIQQVG--RFKEPHAVFYAAEIAIGLFFLQ  459 (674)
T ss_dssp             HHHHHHHHTCTTCC--TTBCCEEEECB----CSSEEEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCC--CeEEEEEEEEE----eCCEEEEEEeCcCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHH
Confidence            44566666666444  49999999998    677999999999 999999998764  5999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      ++ ||+||||||+|||++.++.  +||+|||+|+...... .....+||+.|+|||++..      ..|+.++|+||+|+
T Consensus       460 ~~-gIiHrDLKp~NILl~~~g~--ikL~DFGla~~~~~~~~~~~~~~GT~~Y~APE~l~~------~~~~~~~DvwSlGv  530 (674)
T 3pfq_A          460 SK-GIIYRDLKLDNVMLDSEGH--IKIADFGMCKENIWDGVTTKTFCGTPDYIAPEIIAY------QPYGKSVDWWAFGV  530 (674)
T ss_dssp             HT-SEECCCCCSTTEEECSSSC--EEECCCTTCEECCCTTCCBCCCCSCSSSCCHHHHTC------CCBSTHHHHHHHHH
T ss_pred             hC-CeEeccCChhhEEEcCCCc--EEEeecceeeccccCCcccccccCCCcccCHhhhcC------CCCCccceEechHH
Confidence            96 9999999999999998887  9999999998643322 3335689999999999973      44888999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~  182 (202)
                      ..+      .++.|.++|.
T Consensus       531 ily------elltG~~Pf~  543 (674)
T 3pfq_A          531 LLY------EMLAGQAPFE  543 (674)
T ss_dssp             HHH------HHHHSSCSSC
T ss_pred             HHH------HHHcCCCCCC
Confidence            322      3444655554

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.97  E-value=1.6e-29  Score=198.53  Aligned_cols=160  Identities=13%  Similarity=0.088  Sum_probs=132.0

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ...+|+++++++.+||  ||+++++++.    .+...++||||++++|.+++.... +.+++..+..++.|++.||.|||
T Consensus        50 ~~~~E~~~l~~l~~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~L~~~~~~~~-~~~~~~~~~~i~~qi~~~l~~LH  122 (330)
T 2izr_A           50 QLHLEYRFYKQLGSGD--GIPQVYYFGP----CGKYNAMVLELLGPSLEDLFDLCD-RTFSLKTVLMIAIQLISRMEYVH  122 (330)
T ss_dssp             CHHHHHHHHHHHCSCT--TSCCEEEEEE----ETTEEEEEEECCCCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCC--CCCEEEEEEe----cCCccEEEEEeCCCCHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHH
Confidence            4578999999996566  9999999998    466899999999999999998653 56999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCc---ceeEEeecccccccccccC--------CCCCCCCccchhhHHHHhhhhccCCCCC
Q psy320           85 TKHNLVHTSIKPESIFFKADHV---YIMTLINIQQATTHQECHD--------QQSSSKTKSKIFCEILEQCRLNQDFRLD  153 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~---~~~~l~Dfg~a~~~~~~~~--------~~~~~~~~~~~ape~~~~~~~~~~~~~~  153 (202)
                      +. |++||||||+|||++.++.   ..++|+|||+++.......        .....||+.|+|||.+..      ..++
T Consensus       123 ~~-~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~  195 (330)
T 2izr_A          123 SK-NLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLG------KEQS  195 (330)
T ss_dssp             HT-TEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTT------CCCC
T ss_pred             hC-CeeccCCCHHHeeeccCCCCCCceEEEEEcccceeeecCCCCccccccccCCcCCCccccChHHHcC------CCCC
Confidence            96 9999999999999987653   1299999999987644322        124579999999999884      3377


Q ss_pred             CCcchhhHHHHHHHHHHHHHHHhcCCCCCCC
Q psy320          154 PRVDPTSIKMYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       154 ~~~Diwsl~~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      .++|+||+|+.      +-.+..|..+|...
T Consensus       196 ~~~Di~slG~i------l~ell~g~~Pf~~~  220 (330)
T 2izr_A          196 RRDDLEALGHM------FMYFLRGSLPWQGL  220 (330)
T ss_dssp             HHHHHHHHHHH------HHHHHHSSCTTTTC
T ss_pred             chhHHHHHHHH------HHHHhcCCCCcccc
Confidence            89999999973      33555688888754

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.97  E-value=1.3e-29  Score=198.14  Aligned_cols=159  Identities=19%  Similarity=0.192  Sum_probs=128.1

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcC----CCCCCHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQK----FQPAPLVVAKIIVNQILEG   79 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~----~~~~~~~~~~~~~~qi~~~   79 (202)
                      ....+|+++++++ +||  ||+++++++.    .+...|+||||+.++|.+++....    .+.+++..++.++.|++.|
T Consensus        48 ~~~~~E~~~l~~l-~hp--~iv~~~~~~~----~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~a  120 (317)
T 2pmi_A           48 STAIREISLMKEL-KHE--NIVRLYDVIH----TENKLTLVFEFMDNDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQG  120 (317)
T ss_dssp             HHHHHHHHHHTTC-CBT--TBCCEEEEEC----CTTEEEEEEECCCCBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc-CCC--CcceEEEEEE----ECCeEEEEEEecCCCHHHHHHhccccccccCCCHHHHHHHHHHHHHH
Confidence            4566788888888 454  9999999998    567999999999889999987543    2358999999999999999


Q ss_pred             HHHHHhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcch
Q psy320           80 LNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDP  158 (202)
Q Consensus        80 l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Di  158 (202)
                      |.|||+. |++||||||+||+++.++.  +||+|||.++...... ......+++.|+|||.+..     ...++.++|+
T Consensus       121 L~~lH~~-~ivH~Dlkp~NIl~~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~-----~~~~~~~~Di  192 (317)
T 2pmi_A          121 LAFCHEN-KILHRDLKPQNLLINKRGQ--LKLGDFGLARAFGIPVNTFSSEVVTLWYRAPDVLMG-----SRTYSTSIDI  192 (317)
T ss_dssp             HHHHHHT-TEECCCCCGGGEEECTTCC--EEECCCSSCEETTSCCCCCCCCCSCCTTCCHHHHTT-----CCCCCTHHHH
T ss_pred             HHHHHHC-CeeeCCCChHHeEEcCCCC--EEECcCccceecCCCcccCCCCcccccccCchHhhC-----CCCCCcHHHH
Confidence            9999996 9999999999999998877  9999999998764332 2234578999999999873     2346789999


Q ss_pred             hhHHHHHHHHHHHHHHHhcCCCCCC
Q psy320          159 TSIKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       159 wsl~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      ||+|+..      ..+..|.++|..
T Consensus       193 wslG~il------~el~~g~~pf~~  211 (317)
T 2pmi_A          193 WSCGCIL------AEMITGKPLFPG  211 (317)
T ss_dssp             HHHHHHH------HHHHHSSCSCCC
T ss_pred             HHHHHHH------HHHHhCCCCCCC
Confidence            9998732      245557776643

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.97  E-value=1.3e-29  Score=202.22  Aligned_cols=158  Identities=12%  Similarity=0.127  Sum_probs=126.7

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC--------------CCCCCHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK--------------FQPAPLVVA   69 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~--------------~~~~~~~~~   69 (202)
                      ...+|+++++++.+||  ||++++++|.    .....|+||||+ +++|.+++....              ...++...+
T Consensus       132 ~~~~E~~~l~~l~~hp--nIv~~~~~~~----~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (370)
T 2psq_A          132 DLVSEMEMMKMIGKHK--NIINLLGACT----QDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDL  205 (370)
T ss_dssp             HHHHHHHHHHHSCCCT--TBCCEEEEEC----SSSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHH
T ss_pred             HHHHHHHHHHHhcCCC--CEeeEEEEEc----cCCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHH
Confidence            4567888888885555  9999999998    566899999999 889999998653              134889999


Q ss_pred             HHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC---CCCCCCCccchhhHHHHhhhh
Q psy320           70 KIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD---QQSSSKTKSKIFCEILEQCRL  146 (202)
Q Consensus        70 ~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~ape~~~~~~~  146 (202)
                      ..++.|++.||.|||++ |++||||||+|||++.++.  +||+|||.++.......   .....+++.|+|||.+..   
T Consensus       206 ~~i~~qi~~aL~~LH~~-~ivHrDlkp~NIll~~~~~--~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~---  279 (370)
T 2psq_A          206 VSCTYQLARGMEYLASQ-KCIHRDLAARNVLVTENNV--MKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFD---  279 (370)
T ss_dssp             HHHHHHHHHHHHHHHHT-TEECSCCCGGGEEECTTCC--EEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHT---
T ss_pred             HHHHHHHHHHHHHHHhC-CeeccccchhhEEECCCCC--EEEccccCCcccCcccceecccCCCcccceECHhHhcC---
Confidence            99999999999999996 9999999999999998877  99999999987643221   123456788999999973   


Q ss_pred             ccCCCCCCCcchhhHHHHHHHHHHHHHHHh-cCCCCCC
Q psy320          147 NQDFRLDPRVDPTSIKMYTTFCEILEQCRL-NHQDFRP  183 (202)
Q Consensus       147 ~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~-~~~~~~~  183 (202)
                         ..++.++|+||+|+..+      .+.. |.++|..
T Consensus       280 ---~~~~~~~DvwslG~il~------ellt~g~~p~~~  308 (370)
T 2psq_A          280 ---RVYTHQSDVWSFGVLMW------EIFTLGGSPYPG  308 (370)
T ss_dssp             ---CCCCHHHHHHHHHHHHH------HHHTTSCCSSTT
T ss_pred             ---CCCCcHHHHHHHHHHHH------HHHcCCCCCCCC
Confidence               34788999999986322      3333 6666653

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.97  E-value=4.1e-30  Score=200.35  Aligned_cols=158  Identities=15%  Similarity=0.166  Sum_probs=120.8

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      +.+|++.++++ +  ||||+++++++......+...|+||||+ +++|.+++....  .+++..+..++.|++.||.|||
T Consensus        59 ~~~E~~~l~~l-~--hp~iv~~~~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~lH  133 (311)
T 3ork_A           59 FRREAQNAAAL-N--HPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEG--PMTPKRAIEVIADACQALNFSH  133 (311)
T ss_dssp             HHHHHTTCCCC-C--CTTBCCEEEEEEEEETTEEEEEEEEECCCEEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcC-C--CCCcceEEEeeeccCCCCcccEEEEecCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHH
Confidence            34555555555 3  5599999999987665566789999999 899999998764  4999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC----CCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ----QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~----~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      ++ |++|+||||+||+++.++.  +||+|||.+.........    ....+++.|+|||.+..      ..++.++|+||
T Consensus       134 ~~-~ivH~dlkp~Nil~~~~~~--~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~Di~s  204 (311)
T 3ork_A          134 QN-GIIHRDVKPANIMISATNA--VKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARG------DSVDARSDVYS  204 (311)
T ss_dssp             HT-TCCCCCCCGGGEEEETTSC--EEECCCSCC------------------CCTTCCHHHHHT------CCCCHHHHHHH
T ss_pred             HC-CCCcCCCCHHHEEEcCCCC--EEEeeccCcccccccccccccccccCcCcccCCHHHhcC------CCCCchHhHHH
Confidence            96 9999999999999998877  999999999876543221    13468999999999984      34778999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCC
Q psy320          161 IKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       161 l~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +|+..      ..+..|..+|..
T Consensus       205 lG~~l------~~ll~g~~pf~~  221 (311)
T 3ork_A          205 LGCVL------YEVLTGEPPFTG  221 (311)
T ss_dssp             HHHHH------HHHHHSSCSCCC
T ss_pred             HHHHH------HHHHhCCCCCCC
Confidence            98733      355558777754

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.97  E-value=9e-30  Score=208.22  Aligned_cols=146  Identities=16%  Similarity=0.150  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEec-CCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTG-INGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~-~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++|+.+ +||  ||++++++|.... ......|+||||++++|.+++...  +.+++..++.++.|++.||.||
T Consensus        98 ~~~~E~~~l~~l-~h~--niv~l~~~~~~~~~~~~~~~~lv~e~~~~~L~~~~~~~--~~l~~~~~~~~~~qi~~aL~~L  172 (458)
T 3rp9_A           98 RILREIAILNRL-NHD--HVVKVLDIVIPKDVEKFDELYVVLEIADSDFKKLFRTP--VYLTELHIKTLLYNLLVGVKYV  172 (458)
T ss_dssp             HHHHHHHHHHHC-CCT--TBCCEEEECCCSCTTTCCCEEEEECCCSEEHHHHHHSS--CCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCC--CCCceEEEEecCCcccCceEEEEEeccccchhhhcccC--CCCCHHHHHHHHHHHHHHHHHH
Confidence            456789999988 555  9999999996432 234689999999999999998765  4599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC----------------------------CCCCCCCccc
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD----------------------------QQSSSKTKSK  135 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~----------------------------~~~~~~~~~~  135 (202)
                      |+. ||+||||||+|||++.++.  +||+|||+|+.......                            .....+|+.|
T Consensus       173 H~~-~iiHrDlKp~NILl~~~~~--~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y  249 (458)
T 3rp9_A          173 HSA-GILHRDLKPANCLVNQDCS--VKVCDFGLARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWY  249 (458)
T ss_dssp             HHT-TCBCCCCCGGGEEECTTCC--EEECCCTTCBCTTSCTTCCCCCC---------------------------CCCTT
T ss_pred             HhC-CcCCCCCChhhEEECCCCC--EeecccccchhccCccccccccccCccccccccccccccccccccccCCcccccc
Confidence            996 9999999999999998877  99999999987642211                            1134679999


Q ss_pred             hhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320          136 IFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus       136 ~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      +|||++..     ...|+.++|+||+|+
T Consensus       250 ~aPE~~~~-----~~~~~~~~DiwSlG~  272 (458)
T 3rp9_A          250 RAPELILL-----QENYTEAIDVWSIGC  272 (458)
T ss_dssp             CCHHHHTT-----CCCCCTHHHHHHHHH
T ss_pred             cChHHhhC-----CCCCCcHhHHHHHHH
Confidence            99998752     334788999999976

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.97  E-value=1.3e-29  Score=200.24  Aligned_cols=157  Identities=22%  Similarity=0.291  Sum_probs=128.0

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|++++.++.+||  ||++++++|.    ++...|+||||+ +++|.+.+.+.  +.+++..+..++.|++.||.|||
T Consensus        62 ~~~E~~~l~~~~~hp--~iv~~~~~~~----~~~~~~lv~E~~~gg~L~~~i~~~--~~~~~~~~~~~~~qi~~al~~lH  133 (342)
T 2qr7_A           62 PTEEIEILLRYGQHP--NIITLKDVYD----DGKYVYVVTELMKGGELLDKILRQ--KFFSEREASAVLFTITKTVEYLH  133 (342)
T ss_dssp             CHHHHHHHHHHTTST--TBCCEEEEEE----CSSEEEEEECCCCSCBHHHHHHTC--TTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhcCCC--CcCeEEEEEE----cCCEEEEEEeCCCCCcHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHH
Confidence            356888888886566  9999999998    677999999999 89999998765  45999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCC--cceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           85 TKHNLVHTSIKPESIFFKADH--VYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~--~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      ++ |++||||||+|||+..+.  ...+||+|||.++...... .....++|+.|+|||++....      ++.++|+||+
T Consensus       134 ~~-givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~------~~~~~Diwsl  206 (342)
T 2qr7_A          134 AQ-GVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLERQG------YDAACDIWSL  206 (342)
T ss_dssp             HT-TEECSCCCGGGEEESSSSCSGGGEEECCCTTCEECBCTTCCBCCSSCCSSCCCHHHHHHHH------HHHHHHHHHH
T ss_pred             HC-CcEeccCCHHHEEEecCCCCcCeEEEEECCCcccCcCCCCceeccCCCccccCHHHhcCCC------CCCccCeeeH
Confidence            96 999999999999985432  1249999999998765432 233567899999999998654      6679999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCC
Q psy320          162 KMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      |+.      +..+..|.++|..
T Consensus       207 G~i------l~ell~g~~Pf~~  222 (342)
T 2qr7_A          207 GVL------LYTMLTGYTPFAN  222 (342)
T ss_dssp             HHH------HHHHHHSSCSSCS
T ss_pred             hHH------HHHHhcCCCCCCC
Confidence            873      3355557777764

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.97  E-value=1.5e-29  Score=200.50  Aligned_cols=160  Identities=19%  Similarity=0.180  Sum_probs=127.7

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC--CCCCCHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK--FQPAPLVVAKIIVNQILEGL   80 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~--~~~~~~~~~~~~~~qi~~~l   80 (202)
                      ....+|+++++.+ +||  ||++++++|.    .....|+||||+ +++|.+.+....  ...+++..+..++.|++.||
T Consensus        71 ~~~~~E~~~l~~l-~hp--nIv~~~~~~~----~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al  143 (351)
T 3c0i_A           71 EDLKREASICHML-KHP--HIVELLETYS----SDGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEAL  143 (351)
T ss_dssp             HHHHHHHHHHHHC-CCT--TBCCEEEEEE----ETTEEEEEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CCCcEEEEEE----eCCEEEEEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHH
Confidence            4467899999988 555  9999999998    456899999999 899988776532  23589999999999999999


Q ss_pred             HHHHhhCCccccCCCCCceeeecCCc-ceeEEeecccccccccccC-CCCCCCCccchhhHHHHhhhhccCCCCCCCcch
Q psy320           81 NHLHTKHNLVHTSIKPESIFFKADHV-YIMTLINIQQATTHQECHD-QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDP  158 (202)
Q Consensus        81 ~~lh~~~~ivH~dl~p~nil~~~~~~-~~~~l~Dfg~a~~~~~~~~-~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Di  158 (202)
                      .|||++ |++||||||+|||++.++. ..+||+|||.+........ .....+|+.|+|||++..      ..++.++|+
T Consensus       144 ~~lH~~-~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~Di  216 (351)
T 3c0i_A          144 RYCHDN-NIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGLVAGGRVGTPHFMAPEVVKR------EPYGKPVDV  216 (351)
T ss_dssp             HHHHHT-TEECSCCSGGGEEECSSSTTCCEEECCCTTCEECCTTSCBCCCCCSCGGGCCHHHHTT------CCBCTHHHH
T ss_pred             HHHHHC-CceeccCChHHeEEecCCCCCcEEEecCcceeEecCCCeeecCCcCCcCccCHHHHcC------CCCCchHhh
Confidence            999996 9999999999999986542 3499999999988754332 234579999999999974      347889999


Q ss_pred             hhHHHHHHHHHHHHHHHhcCCCCCC
Q psy320          159 TSIKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       159 wsl~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      ||+|+..+      .+..|.++|..
T Consensus       217 wslG~il~------~ll~g~~pf~~  235 (351)
T 3c0i_A          217 WGCGVILF------ILLSGCLPFYG  235 (351)
T ss_dssp             HHHHHHHH------HHHHSSCSSCS
T ss_pred             HHHHHHHH------HHHHCCCCCCC
Confidence            99986322      44446666643

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.97  E-value=6.8e-30  Score=204.03  Aligned_cols=157  Identities=18%  Similarity=0.238  Sum_probs=126.6

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++++ +||  ||++++++|.    .....++||||+ +++|.+++.... ..+++..+..++.|++.||.||
T Consensus       132 ~~~~E~~~l~~l-~hp--nIv~~~~~~~----~~~~~~lv~E~~~~~~L~~~l~~~~-~~l~~~~~~~i~~qi~~aL~~L  203 (373)
T 2x4f_A          132 EVKNEISVMNQL-DHA--NLIQLYDAFE----SKNDIVLVMEYVDGGELFDRIIDES-YNLTELDTILFMKQICEGIRHM  203 (373)
T ss_dssp             HHHHHHHHHTTC-CCT--TBCCEEEEEE----CSSEEEEEEECCTTCEEHHHHHHTG-GGCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCC--CCCeEEEEEE----ECCEEEEEEeCCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHH
Confidence            456788888877 455  9999999998    567899999999 899998886543 3599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |+. ||+||||||+|||+..+....+||+|||+++............+++.|+|||.+...      .++.++|+||+|+
T Consensus       204 H~~-~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~~DiwslG~  276 (373)
T 2x4f_A          204 HQM-YILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREKLKVNFGTPEFLAPEVVNYD------FVSFPTDMWSVGV  276 (373)
T ss_dssp             HHT-TEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCBCCCCCSSCTTCCHHHHTTC------BCCHHHHHHHHHH
T ss_pred             HHC-CcccccCCHHHEEEecCCCCcEEEEeCCCceecCCccccccccCCCcEeChhhccCC------CCCcHHhHHHHHH
Confidence            996 999999999999996544445999999999887654444456799999999998733      3677999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~  182 (202)
                      ..+      .+..|.++|.
T Consensus       277 il~------elltg~~pf~  289 (373)
T 2x4f_A          277 IAY------MLLSGLSPFL  289 (373)
T ss_dssp             HHH------HHHHSSCTTC
T ss_pred             HHH------HHHhCCCCCC
Confidence            322      4444666664

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.97  E-value=4.2e-30  Score=205.16  Aligned_cols=142  Identities=19%  Similarity=0.179  Sum_probs=118.7

Q ss_pred             CCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCc
Q psy320           20 PSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPES   98 (202)
Q Consensus        20 ~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~n   98 (202)
                      .||||++++++|.    .....|+||||+ +++|.+++.+..  .+++..++.++.|++.||.|||++ ||+||||||+|
T Consensus        97 ~hp~Iv~l~~~~~----~~~~~~lv~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~-givHrDlkp~N  169 (373)
T 2r5t_A           97 KHPFLVGLHFSFQ----TADKLYFVLDYINGGELFYHLQRER--CFLEPRARFYAAEIASALGYLHSL-NIVYRDLKPEN  169 (373)
T ss_dssp             CCTTBCCEEEEEE----CSSEEEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCGGG
T ss_pred             CCCCCCCEEEEEE----eCCEEEEEEeCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHC-CceecCCCHHH
Confidence            3669999999999    677999999999 899999998764  499999999999999999999996 99999999999


Q ss_pred             eeeecCCcceeEEeecccccccccc-cCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHhc
Q psy320           99 IFFKADHVYIMTLINIQQATTHQEC-HDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLN  177 (202)
Q Consensus        99 il~~~~~~~~~~l~Dfg~a~~~~~~-~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~~  177 (202)
                      ||++.++.  +||+|||+++..... ......+||+.|+|||++..      ..++.++|+||+|+..+      .+..|
T Consensus       170 Ill~~~g~--ikL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~DiwslG~il~------ell~G  235 (373)
T 2r5t_A          170 ILLDSQGH--IVLTDFGLCKENIEHNSTTSTFCGTPEYLAPEVLHK------QPYDRTVDWWCLGAVLY------EMLYG  235 (373)
T ss_dssp             EEECTTSC--EEECCCCBCGGGBCCCCCCCSBSCCCCCCCHHHHTT------CCCCTHHHHHHHHHHHH------HHHHS
T ss_pred             EEECCCCC--EEEeeCccccccccCCCccccccCCccccCHHHhCC------CCCCchhhhHHHHHHHH------HHHcC
Confidence            99998887  999999999874332 23335689999999999973      34788999999986322      44446


Q ss_pred             CCCCC
Q psy320          178 HQDFR  182 (202)
Q Consensus       178 ~~~~~  182 (202)
                      .++|.
T Consensus       236 ~~Pf~  240 (373)
T 2r5t_A          236 LPPFY  240 (373)
T ss_dssp             SCTTC
T ss_pred             CCCCC
Confidence            66664

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.97  E-value=3.1e-29  Score=203.63  Aligned_cols=162  Identities=19%  Similarity=0.305  Sum_probs=133.6

Q ss_pred             hHHHHHHHHHHHHhcC---CCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKH---PSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGL   80 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~---~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l   80 (202)
                      ....+|+++++.++..   .|+||++++++|.    .....|+||||++++|.+++......++++..++.++.|++.||
T Consensus       138 ~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~----~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL  213 (429)
T 3kvw_A          138 RQAAEEIRILEHLRKQDKDNTMNVIHMLENFT----FRNHICMTFELLSMNLYELIKKNKFQGFSLPLVRKFAHSILQCL  213 (429)
T ss_dssp             HHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEE----ETTEEEEEECCCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccccCCcCEEEEEeecc----cCCeEEEEEeccCCCHHHHHHhccCCCCCHHHHHHHHHHHHHHH
Confidence            3456788889888543   3779999999998    46699999999988999999887666799999999999999999


Q ss_pred             HHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           81 NHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        81 ~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      .|||+. ||+||||||+|||++.++...+||+|||+|....  .......+++.|+|||++...      .++.++|+||
T Consensus       214 ~~LH~~-~ivHrDlKp~NILl~~~~~~~vkL~DFG~a~~~~--~~~~~~~gt~~y~aPE~~~~~------~~~~~~DiwS  284 (429)
T 3kvw_A          214 DALHKN-RIIHCDLKPENILLKQQGRSGIKVIDFGSSCYEH--QRVYTYIQSRFYRAPEVILGA------RYGMPIDMWS  284 (429)
T ss_dssp             HHHHHH-TEECSCCSGGGEEESSTTSCCEEECCCTTCEETT--CCCCSSCSCGGGCCHHHHHTB------CCCTHHHHHH
T ss_pred             HHHHHC-CeecCCCCHHHeEEccCCCcceEEeecccceecC--CcccccCCCCCccChHHHhCC------CCCchHHHHh
Confidence            999997 9999999999999998765459999999997653  223345789999999999843      3788999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCC
Q psy320          161 IKMYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       161 l~~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      +|+.      +..+..|.++|...
T Consensus       285 lG~i------l~elltG~~pf~~~  302 (429)
T 3kvw_A          285 LGCI------LAELLTGYPLLPGE  302 (429)
T ss_dssp             HHHH------HHHHHHSSCSSCCS
T ss_pred             HHHH------HHHHHhCCCCCCCC
Confidence            9873      33555688777643

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.97  E-value=2.1e-29  Score=194.50  Aligned_cols=145  Identities=20%  Similarity=0.198  Sum_probs=119.3

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ....+|+++++++ +|  |||+++++++.    ++...++||||+++++.+.+.... +.+++..++.++.|++.||.||
T Consensus        46 ~~~~~E~~~l~~l-~h--~~iv~~~~~~~----~~~~~~lv~e~~~~~l~~~~~~~~-~~l~~~~~~~~~~ql~~~l~~l  117 (292)
T 3o0g_A           46 SSALREICLLKEL-KH--KNIVRLHDVLH----SDKKLTLVFEFCDQDLKKYFDSCN-GDLDPEIVKSFLFQLLKGLGFC  117 (292)
T ss_dssp             HHHHHHHHHHTTC-CC--TTBCCEEEEEE----ETTEEEEEEECCSEEHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhcC-CC--CCEeeEEeEEE----eCCEEEEEEecCCCCHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHH
Confidence            3455778777777 45  49999999998    466999999999778877776543 5699999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |++ |++||||||+||+++.++.  +||+|||.++...... ......+++.|+|||.+..     ...++.++|+||+|
T Consensus       118 H~~-~ivH~dikp~Nil~~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~-----~~~~~~~~DiwslG  189 (292)
T 3o0g_A          118 HSR-NVLHRDLKPQNLLINRNGE--LKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFG-----AKLYSTSIDMWSAG  189 (292)
T ss_dssp             HHT-TEECCCCSGGGEEECTTSC--EEECCCTTCEECCSCCSCCCSCCSCGGGCCHHHHTT-----CSCCCTHHHHHHHH
T ss_pred             HhC-CeecCCCCHHHEEEcCCCC--EEEeecccceecCCccccccCCccccCCcChHHHcC-----CCCcCchHHHHHHH
Confidence            996 9999999999999998877  9999999998765332 2234578999999999873     22367899999998


Q ss_pred             HH
Q psy320          163 MY  164 (202)
Q Consensus       163 ~~  164 (202)
                      +.
T Consensus       190 ~i  191 (292)
T 3o0g_A          190 CI  191 (292)
T ss_dssp             HH
T ss_pred             HH
Confidence            63

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.97  E-value=1.8e-29  Score=197.33  Aligned_cols=168  Identities=20%  Similarity=0.263  Sum_probs=130.7

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK-FQPAPLVVAKIIVNQILEGLN   81 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~-~~~~~~~~~~~~~~qi~~~l~   81 (202)
                      ....+|+++++++ +||  ||+++++++...  .....|+||||+ +++|.+++.... ...+++..++.++.|++.||.
T Consensus        52 ~~~~~E~~~l~~l-~h~--~iv~~~~~~~~~--~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~  126 (319)
T 4euu_A           52 DVQMREFEVLKKL-NHK--NIVKLFAIEEET--TTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMN  126 (319)
T ss_dssp             HHHHHHHHHHHHC-CCT--TBCCEEEEEECT--TTCCEEEEEECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc-CCC--CcceEEEEeecC--CCceEEEEEeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHH
Confidence            3456889999988 455  999999998732  244889999999 899999997654 233999999999999999999


Q ss_pred             HHHhhCCccccCCCCCceeeec--CCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhcc--CCCCCCCcc
Q psy320           82 HLHTKHNLVHTSIKPESIFFKA--DHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQ--DFRLDPRVD  157 (202)
Q Consensus        82 ~lh~~~~ivH~dl~p~nil~~~--~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~--~~~~~~~~D  157 (202)
                      |||+. |++||||||+|||+..  ++...+||+|||.++............+++.|+|||.+.......  ...++.++|
T Consensus       127 ~LH~~-~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~D  205 (319)
T 4euu_A          127 HLREN-GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVD  205 (319)
T ss_dssp             HHHHT-TEECSCCSGGGEEEEECTTSCEEEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHH
T ss_pred             HHHHC-CEecCCCCHHHEEEeccCCCCceEEEccCCCceecCCCCceeecccCCCccCHHHhhhccccccccCCCCcHHH
Confidence            99996 9999999999999832  222349999999998876554444567999999999987542211  245678999


Q ss_pred             hhhHHHHHHHHHHHHHHHhcCCCCCC
Q psy320          158 PTSIKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       158 iwsl~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +||+|+..+      .+..|..+|.+
T Consensus       206 iwslG~il~------el~~g~~pf~~  225 (319)
T 4euu_A          206 LWSIGVTFY------HAATGSLPFRP  225 (319)
T ss_dssp             HHHHHHHHH------HHHHSSCSEEC
T ss_pred             HHHHHHHHH------HHHhCCCCCCC
Confidence            999987332      55557777764

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.96  E-value=3.3e-29  Score=197.81  Aligned_cols=162  Identities=20%  Similarity=0.243  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      .+.+|+++++.++ |.|+||+++++++.    .+...|+|||+.+++|.+++...  +.+++..+..++.|++.||.|||
T Consensus        53 ~~~~E~~~l~~l~-~~~~~iv~~~~~~~----~~~~~~lv~e~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~al~~lH  125 (343)
T 3dbq_A           53 SYRNEIAYLNKLQ-QHSDKIIRLYDYEI----TDQYIYMVMECGNIDLNSWLKKK--KSIDPWERKSYWKNMLEAVHTIH  125 (343)
T ss_dssp             HHHHHHHHHHHHT-TTCTTBCCEEEEEE----CSSEEEEEECCCSEEHHHHHHHS--CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhh-hcCCceEEEeeeEe----eCCEEEEEEeCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHH
Confidence            4567999999994 53569999999998    57799999997799999999876  45999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccC---CCCCCCCccchhhHHHHhhhhc-----cCCCCCCCc
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD---QQSSSKTKSKIFCEILEQCRLN-----QDFRLDPRV  156 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~ape~~~~~~~~-----~~~~~~~~~  156 (202)
                      +. ||+||||||+|||++ ++.  +||+|||+++.......   .....+|+.|+|||.+......     ....++.++
T Consensus       126 ~~-~iiHrDikp~NIll~-~~~--~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~  201 (343)
T 3dbq_A          126 QH-GIVHSDLKPANFLIV-DGM--LKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKS  201 (343)
T ss_dssp             HT-TCCCCCCCGGGEEEE-TTE--EEECCCSSSCCC------------CCCCSSCCHHHHHHCC-----------CCHHH
T ss_pred             hC-CeecCCCCcceEEEE-CCc--EEEeecccccccCcccccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchh
Confidence            96 999999999999997 344  99999999987654322   1245799999999999752111     113467799


Q ss_pred             chhhHHHHHHHHHHHHHHHhcCCCCCC
Q psy320          157 DPTSIKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       157 Diwsl~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      |+||+|+..+      .+..|..+|..
T Consensus       202 DiwslG~il~------ell~g~~pf~~  222 (343)
T 3dbq_A          202 DVWSLGCILY------YMTYGKTPFQQ  222 (343)
T ss_dssp             HHHHHHHHHH------HHHHSSCTTTT
T ss_pred             hHHHHHHHHH------HHHhCCCcchh
Confidence            9999987333      55568777753

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.96  E-value=9.4e-30  Score=196.22  Aligned_cols=157  Identities=17%  Similarity=0.179  Sum_probs=123.7

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ....+|+++++.+ +||  ||+++++++.    .+...++||||+.++|.+++.... +.+++..++.++.|++.||.||
T Consensus        45 ~~~~~E~~~l~~l-~h~--~iv~~~~~~~----~~~~~~lv~e~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~l  116 (288)
T 1ob3_A           45 STTIREISILKEL-KHS--NIVKLYDVIH----TKKRLVLVFEHLDQDLKKLLDVCE-GGLESVTAKSFLLQLLNGIAYC  116 (288)
T ss_dssp             HHHHHHHHGGGGC-CCT--TBCCEEEEEE----CSSCEEEEEECCSEEHHHHHHTST-TCCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhc-CCC--CEeeeeeEEc----cCCeEEEEEEecCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHH
Confidence            3456788888877 455  9999999998    567899999999889999987643 4599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |++ |++||||||+||+++.++.  +||+|||.+....... ......+++.|+|||.+..     ...++.++|+||+|
T Consensus       117 H~~-~i~H~dlkp~Nil~~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~-----~~~~~~~~DiwslG  188 (288)
T 1ob3_A          117 HDR-RVLHRDLKPQNLLINREGE--LKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMG-----SKKYSTTIDIWSVG  188 (288)
T ss_dssp             HHT-TCCCSCCCGGGEEECTTSC--EEECCTTHHHHHCC---------CCCTTCCHHHHTT-----CCSCCTHHHHHHHH
T ss_pred             HHC-CeecCCCCHHHEEEcCCCC--EEEeECccccccCccccccccccccccccCchheeC-----CCCCCcHHHHHHHH
Confidence            996 9999999999999998877  9999999998764322 2224578999999999862     23467899999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +..+      .+..|.++|.
T Consensus       189 ~il~------~l~~g~~pf~  202 (288)
T 1ob3_A          189 CIFA------EMVNGTPLFP  202 (288)
T ss_dssp             HHHH------HHHHSSCSCC
T ss_pred             HHHH------HHHhCCCCCC
Confidence            7322      4445666664

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.96  E-value=5e-29  Score=194.96  Aligned_cols=164  Identities=21%  Similarity=0.201  Sum_probs=134.0

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEec-CCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTG-INGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~-~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+.+++.++...||||+++++++.... ......++||||+.++|.+++.....+.+++..+..++.|++.||.||
T Consensus        57 ~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~l  136 (326)
T 1blx_A           57 STIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFL  136 (326)
T ss_dssp             THHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSSEEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHhhhccCCCCeEeeeeeeeecccCCCceEEEEEecCCCCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHH
Confidence            4567888888886444669999999987432 245789999999988999999887656699999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |+. |++|+||||+||+++.++.  ++|+|||.+.............+++.|+|||.+...      .++.++|+||+|+
T Consensus       137 H~~-gi~H~dlkp~Nili~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~------~~~~~~Di~slG~  207 (326)
T 1blx_A          137 HSH-RVVHRDLKPQNILVTSSGQ--IKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQS------SYATPVDLWSVGC  207 (326)
T ss_dssp             HHT-TCCCCCCCGGGEEECTTCC--EEECSCCSCCCCCGGGGGCCCCCCCTTCCHHHHTTC------CCCTHHHHHHHHH
T ss_pred             HHC-CceeccCCHHHeEEcCCCC--EEEecCcccccccCCCCccccccccceeCHHHHhcC------CCCcchhHHHHHH
Confidence            996 9999999999999998876  999999999876544444456789999999999733      3778999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~  183 (202)
                      ..+      .+..|.++|..
T Consensus       208 il~------~l~~g~~pf~~  221 (326)
T 1blx_A          208 IFA------EMFRRKPLFRG  221 (326)
T ss_dssp             HHH------HHHHSSCSCCC
T ss_pred             HHH------HHHcCCCCCCC
Confidence            322      44457766653

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.96  E-value=7.2e-29  Score=191.78  Aligned_cols=161  Identities=20%  Similarity=0.265  Sum_probs=132.0

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++++.+||  ||+++++++.    .....++||||+ +++|.+++....  .+++..+..++.|++.||.||
T Consensus        69 ~~~~e~~~l~~l~~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~l  140 (298)
T 1phk_A           69 ATLKEVDILRKVSGHP--NIIQLKDTYE----TNTFFFLVFDLMKKGELFDYLTEKV--TLSEKETRKIMRALLEVICAL  140 (298)
T ss_dssp             HHHHHHHHHHHHTTCT--TBCCEEEEEE----CSSEEEEEEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCC--CEeeeeeeec----cCCeEEEEEeccCCCcHHHHHhccC--CCCHHHHHHHHHHHHHHHHHH
Confidence            4567888899886566  9999999998    577999999999 899999998763  499999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |+. |++|+||+|+||+++.++.  ++|+|||.+.............+++.|+|||.+..........++.++|+||+|+
T Consensus       141 H~~-~i~H~dl~p~Nil~~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~  217 (298)
T 1phk_A          141 HKL-NIVHRDLKPENILLDDDMN--IKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGV  217 (298)
T ss_dssp             HHT-TEECSCCSGGGEEECTTCC--EEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHH
T ss_pred             HHC-CcccCCCCcceEEEcCCCc--EEEecccchhhcCCCcccccccCCccccCHHHhccccccccccCCcccccHhHHH
Confidence            996 9999999999999998877  9999999998775444444567899999999997554333445778999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~  182 (202)
                      ..+      .+..|..+|.
T Consensus       218 ~l~------~l~~g~~p~~  230 (298)
T 1phk_A          218 IMY------TLLAGSPPFW  230 (298)
T ss_dssp             HHH------HHHHSSCSSC
T ss_pred             HHH------HHHHCCCCCc
Confidence            322      4444666553

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.96  E-value=3.6e-29  Score=192.07  Aligned_cols=148  Identities=16%  Similarity=0.224  Sum_probs=123.7

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEec------------CCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTG------------INGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAK   70 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~------------~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~   70 (202)
                      ....+|+++++++ +||  ||+++++++....            ......++||||+ +++|.+++.......+++..+.
T Consensus        49 ~~~~~e~~~l~~l-~h~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~  125 (284)
T 2a19_B           49 EKAEREVKALAKL-DHV--NIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLAL  125 (284)
T ss_dssp             GGGHHHHHHHHHC-CCT--TBCCEEEEEEEEEEC---------CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CEEEEeeeEeccccCcccccccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHH
Confidence            3456899999988 455  9999999986411            1245789999999 7899999987654569999999


Q ss_pred             HHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCC
Q psy320           71 IIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDF  150 (202)
Q Consensus        71 ~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~  150 (202)
                      .++.|++.||.|||+. |++|+||||+||+++.++.  ++|+|||.+.............+++.|+|||.+..      .
T Consensus       126 ~i~~qi~~~l~~lH~~-~i~H~dlkp~Nil~~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~  196 (284)
T 2a19_B          126 ELFEQITKGVDYIHSK-KLINRDLKPSNIFLVDTKQ--VKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISS------Q  196 (284)
T ss_dssp             HHHHHHHHHHHHHHHT-TEECSCCSGGGEEEEETTE--EEECCCTTCEESSCCSCCCCCCSCCTTSCHHHHHC------S
T ss_pred             HHHHHHHHHHHHHHhC-CeeeccCCHHHEEEcCCCC--EEECcchhheeccccccccccCCcccccChhhhcc------C
Confidence            9999999999999996 9999999999999998876  99999999988765544445678999999999973      3


Q ss_pred             CCCCCcchhhHHH
Q psy320          151 RLDPRVDPTSIKM  163 (202)
Q Consensus       151 ~~~~~~Diwsl~~  163 (202)
                      .++.++|+||+|+
T Consensus       197 ~~~~~~Di~slG~  209 (284)
T 2a19_B          197 DYGKEVDLYALGL  209 (284)
T ss_dssp             CCCTHHHHHHHHH
T ss_pred             CCcchhhhHHHHH
Confidence            4778999999975

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.96  E-value=1.3e-30  Score=218.07  Aligned_cols=138  Identities=16%  Similarity=0.105  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+++|+++.+|+  ||++++++|+    +....||||||+ |++|.+++.+.+  ++++.   .++.||+.||.|+
T Consensus       287 ~~~~E~~~l~~~~~~~--~i~~~~~~~e----d~~~~yLVMEyv~G~~L~d~i~~~~--~l~~~---~I~~QIl~AL~yl  355 (569)
T 4azs_A          287 ELHNEIKFLTQPPAGF--DAPAVLAHGE----NAQSGWLVMEKLPGRLLSDMLAAGE--EIDRE---KILGSLLRSLAAL  355 (569)
T ss_dssp             HHHHHHHHHHSCCTTC--CCCCEEEEEE----CSSEEEEEEECCCSEEHHHHHHTTC--CCCHH---HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCC--CeeEEEEEEE----ECCEEEEEEecCCCCcHHHHHHhCC--CCCHH---HHHHHHHHHHHHH
Confidence            4667899998886555  9999999999    677999999999 999999998763  47664   4789999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC-CCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ-QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~-~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |++ ||+||||||+|||++.++.  +||+|||+|+........ ...+||+.|++||++.+.       +..++|+||++
T Consensus       356 H~~-GIIHRDIKPeNILL~~dg~--vKL~DFGlAr~~~~~~~~~~t~vGTp~YmAPE~l~g~-------~~~~~d~~s~g  425 (569)
T 4azs_A          356 EKQ-GFWHDDVRPWNVMVDARQH--ARLIDFGSIVTTPQDCSWPTNLVQSFFVFVNELFAEN-------KSWNGFWRSAP  425 (569)
T ss_dssp             HHT-TCEESCCCGGGEEECTTSC--EEECCCTTEESCC---CCSHHHHHHHHHHHHHHC---------------------
T ss_pred             HHC-CceeccCchHhEEECCCCC--EEEeecccCeeCCCCCccccCceechhhccHHHhCCC-------CCCcccccccc
Confidence            996 9999999999999998887  999999999876543322 245799999999998732       34478999886


Q ss_pred             H
Q psy320          163 M  163 (202)
Q Consensus       163 ~  163 (202)
                      +
T Consensus       426 ~  426 (569)
T 4azs_A          426 V  426 (569)
T ss_dssp             -
T ss_pred             c
Confidence            4

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.96  E-value=1.3e-29  Score=207.94  Aligned_cols=142  Identities=18%  Similarity=0.251  Sum_probs=120.0

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++.+ +|  |||+++++++.    .....|+||||+ +++|.+++.+.  +.+++..++.++.|++.||.||
T Consensus        62 ~~~~Ei~~l~~l-~H--pnIv~l~~~~~----~~~~~~lv~E~~~gg~L~~~l~~~--~~l~~~~~~~i~~qi~~aL~~L  132 (476)
T 2y94_A           62 KIRREIQNLKLF-RH--PHIIKLYQVIS----TPSDIFMVMEYVSGGELFDYICKN--GRLDEKESRRLFQQILSGVDYC  132 (476)
T ss_dssp             HHHHHHHHHTTC-CC--TTBCCEEEEEE----CSSEEEEEEECCSSEEHHHHTTSS--SSCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CC--CCCCcEEEEEE----ECCEEEEEEeCCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHH
Confidence            345678777777 45  59999999998    567999999999 99999998754  4599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |+. |++||||||+|||++.++.  +||+|||.+............++++.|+|||.+....     ..+.++|+||+|+
T Consensus       133 H~~-givHrDLkp~NIll~~~~~--vkL~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~~~~DiwSlGv  204 (476)
T 2y94_A          133 HRH-MVVHRDLKPENVLLDAHMN--AKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRL-----YAGPEVDIWSSGV  204 (476)
T ss_dssp             HTT-TEECSCCSGGGEEECTTCC--EEECCCSSCEECCTTCCBCCCCSCSTTCCHHHHTTCC-----BCSHHHHHHHHHH
T ss_pred             HHC-CCCcccccHHHEEEecCCC--eEEEeccchhhccccccccccCCCcCeEChhhccCCC-----CCCCcceehhhHH
Confidence            996 9999999999999998877  9999999998875444444568999999999998432     1256899999976

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.96  E-value=2.7e-29  Score=196.59  Aligned_cols=149  Identities=22%  Similarity=0.289  Sum_probs=117.8

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecC-----------------------------------------------
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGI-----------------------------------------------   36 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~-----------------------------------------------   36 (202)
                      +...+|+++++++ +||  ||++++++|.....                                               
T Consensus        49 ~~~~~E~~~l~~l-~hp--niv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (332)
T 3qd2_B           49 EKVMREVKALAKL-EHP--GIVRYFNAWLETPPEKWQEEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVG  125 (332)
T ss_dssp             HHHHHHHHHHTSC-CCT--TBCCEEEEEEECCSCHHHHHHHC--------------------------------------
T ss_pred             HHHHHHHHHHHhC-CCC--CEeeEEEEEEEeccchhhhhhhhhhhccccccccccCCCcccccccceeeccccCcccccc
Confidence            3456788888888 455  99999999875321                                               


Q ss_pred             ------CceEEEEEEccc-cccHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcce
Q psy320           37 ------NGTHVCTVTEIM-AECLCNYMIRQKF-QPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYI  108 (202)
Q Consensus        37 ------~~~~~~lv~e~~-~~sL~~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~  108 (202)
                            .....++||||+ +++|.+++..... ...+...++.++.|++.||.|||++ |++||||||+||+++.++.  
T Consensus       126 ~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~-~ivH~Dlkp~NIll~~~~~--  202 (332)
T 3qd2_B          126 QLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHGVCLHIFIQIAEAVEFLHSK-GLMHRDLKPSNIFFTMDDV--  202 (332)
T ss_dssp             ------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEECTTCC--
T ss_pred             cccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhhHHHHHHHHHHHHHHHHHHhC-CeeecCCCcccEEEeCCCC--
Confidence                  123589999999 8999999987542 2356667899999999999999996 9999999999999998876  


Q ss_pred             eEEeeccccccccccc-------------CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHH
Q psy320          109 MTLINIQQATTHQECH-------------DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus       109 ~~l~Dfg~a~~~~~~~-------------~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~  164 (202)
                      +||+|||.++......             ......+++.|+|||.+..      ..++.++|+||+|+.
T Consensus       203 ~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~Di~slG~i  265 (332)
T 3qd2_B          203 VKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIHG------NNYSHKVDIFSLGLI  265 (332)
T ss_dssp             EEECCCTTCEECSCC--------------CCCSCC-CGGGSCHHHHHC------CCCCTHHHHHHHHHH
T ss_pred             EEEeecCcccccccchhhccccccccccccccccCCCcCccChHHhcC------CCCcchhhHHHHHHH
Confidence            9999999998765432             1123479999999999983      347889999999753

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.96  E-value=6.6e-30  Score=199.23  Aligned_cols=156  Identities=13%  Similarity=0.202  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKF-QPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      .+.+|+++++++ +||  ||+++++++.    .....++||||+ +++|.+++..... ..+++..+..++.|++.||.|
T Consensus        80 ~~~~E~~~l~~l-~hp--~iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~  152 (309)
T 3p86_A           80 EFLREVAIMKRL-RHP--NIVLFMGAVT----QPPNLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNY  152 (309)
T ss_dssp             HHHHHHHHHHHC-CCT--TBCCEEEEEC----STTCCEEEEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCC--CEeeEEEEEE----ECCceEEEEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            456789989888 455  9999999998    566899999999 8899999976431 238999999999999999999


Q ss_pred             HHhhCC--ccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           83 LHTKHN--LVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        83 lh~~~~--ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      ||+. |  ++||||||+||+++.++.  +||+|||.++...... ......+++.|+|||.+..      ..++.++|+|
T Consensus       153 LH~~-~~~ivH~Dikp~NIll~~~~~--~kL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~Diw  223 (309)
T 3p86_A          153 LHNR-NPPIVHRNLKSPNLLVDKKYT--VKVCDFGLSRLKASTFLSSKSAAGTPEWMAPEVLRD------EPSNEKSDVY  223 (309)
T ss_dssp             HHTS-SSCCCCTTCCGGGEEECTTCC--EEECCCC-----------------CCTTSCHHHHTT------CCCCTTHHHH
T ss_pred             HHcC-CCCEECCCCChhhEEEeCCCc--EEECCCCCCccccccccccccCCCCccccChhhhcC------CCCCchhhHH
Confidence            9996 9  999999999999998876  9999999998654332 2234578999999999984      3367899999


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCC
Q psy320          160 SIKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       160 sl~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      |+|+..+      .+..|..+|.
T Consensus       224 slG~il~------elltg~~Pf~  240 (309)
T 3p86_A          224 SFGVILW------ELATLQQPWG  240 (309)
T ss_dssp             HHHHHHH------HHHHCCCTTT
T ss_pred             HHHHHHH------HHHhCCCCCC
Confidence            9986332      3444555553

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.96  E-value=3.9e-29  Score=200.71  Aligned_cols=163  Identities=20%  Similarity=0.245  Sum_probs=125.4

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ..+.+|+++++.++ |.||||+++++++.    .....|+|||+.+++|.+++....  .+++..+..++.|++.||.||
T Consensus        99 ~~~~~Ei~~l~~l~-~~~~~iv~~~~~~~----~~~~~~lv~E~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~l  171 (390)
T 2zmd_A           99 DSYRNEIAYLNKLQ-QHSDKIIRLYDYEI----TDQYIYMVMECGNIDLNSWLKKKK--SIDPWERKSYWKNMLEAVHTI  171 (390)
T ss_dssp             HHHHHHHHHHHHHT-TTCTTBCCEEEEEE----CSSEEEEEEECCSEEHHHHHHHCS--SCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcc-cCCCeEEEEEEEEe----cCCEEEEEEecCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHH
Confidence            34578999999994 44669999999998    566899999977999999998764  589999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC---CCCCCCCccchhhHHHHhhhhc-----cCCCCCCC
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD---QQSSSKTKSKIFCEILEQCRLN-----QDFRLDPR  155 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~ape~~~~~~~~-----~~~~~~~~  155 (202)
                      |+. ||+||||||+|||++ ++.  +||+|||+++.......   .....+|+.|+|||++......     ....++.+
T Consensus       172 H~~-~ivHrDlkp~NIll~-~~~--~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~  247 (390)
T 2zmd_A          172 HQH-GIVHSDLKPANFLIV-DGM--LKLIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPK  247 (390)
T ss_dssp             HTT-TCCCCCCCGGGEEES-SSC--EEECCCSSSCCC---------CCSCCCGGGCCHHHHHCC------------CCHH
T ss_pred             HHC-CeeecCCCHHHEEEE-CCe--EEEEecCccccccCCCccccCCCCCcCCCccChHHhhhccccccccccccCCCCh
Confidence            996 999999999999995 344  99999999987654322   2245799999999999742110     11246779


Q ss_pred             cchhhHHHHHHHHHHHHHHHhcCCCCCC
Q psy320          156 VDPTSIKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       156 ~Diwsl~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +|+||+|+..+      .++.|.++|..
T Consensus       248 ~DiwSlGvil~------ell~G~~Pf~~  269 (390)
T 2zmd_A          248 SDVWSLGCILY------YMTYGKTPFQQ  269 (390)
T ss_dssp             HHHHHHHHHHH------HHHHSSCTTTT
T ss_pred             hhHHHHHHHHH------HHHHCCCcchh
Confidence            99999987322      45557777753

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.96  E-value=6e-29  Score=196.82  Aligned_cols=155  Identities=17%  Similarity=0.213  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      .+.+|+++++++ +||  ||+++++++.    .+...++||||+.++|.+++.... +.+++..+..++.|++.||.|||
T Consensus       100 ~~~~E~~~l~~l-~hp--niv~~~~~~~----~~~~~~lv~e~~~g~l~~~l~~~~-~~l~~~~~~~i~~qi~~aL~~LH  171 (348)
T 1u5q_A          100 DIIKEVRFLQKL-RHP--NTIQYRGCYL----REHTAWLVMEYCLGSASDLLEVHK-KPLQEVEIAAVTHGALQGLAYLH  171 (348)
T ss_dssp             HHHHHHHHHHHC-CCT--TBCCEEEEEE----ETTEEEEEEECCSEEHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCC--CEeeEEEEEE----ECCeEEEEEecCCCCHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH
Confidence            356788888888 455  9999999998    466999999999888988886543 45999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~  164 (202)
                      +. |++||||||+|||++.++.  +||+|||.+.....   .....+++.|+|||.+....   ...++.++|+||+|+.
T Consensus       172 ~~-~ivH~Dlkp~NIll~~~~~--~kL~DfG~a~~~~~---~~~~~gt~~y~aPE~~~~~~---~~~~~~~~DiwslG~i  242 (348)
T 1u5q_A          172 SH-NMIHRDVKAGNILLSEPGL--VKLGDFGSASIMAP---ANSFVGTPYWMAPEVILAMD---EGQYDGKVDVWSLGIT  242 (348)
T ss_dssp             HT-TCBCCCCSGGGEEEETTTE--EEECCCTTCBSSSS---BCCCCSCGGGCCHHHHHTTS---SCCBCTHHHHHHHHHH
T ss_pred             hC-CeeeCCCCHHHEEECCCCC--EEEeeccCceecCC---CCcccCCcceeCHhhhcccc---CCCCCcHHHHHHHHHH
Confidence            96 9999999999999998776  99999999987643   23457899999999996432   3457789999999873


Q ss_pred             HHHHHHHHHHHhcCCCCC
Q psy320          165 TTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~  182 (202)
                      .+      .+..|.++|.
T Consensus       243 l~------ell~g~~p~~  254 (348)
T 1u5q_A          243 CI------ELAERKPPLF  254 (348)
T ss_dssp             HH------HHHHSSCTTT
T ss_pred             HH------HHHhCCCCCC
Confidence            32      4445666654

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.96  E-value=1.3e-29  Score=198.87  Aligned_cols=160  Identities=16%  Similarity=0.196  Sum_probs=125.3

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ....+|+.+++.++.||  ||++++++|.    .....++||||+ +++|.+++.....+.+++..++.++.|++.||.|
T Consensus        73 ~~~~~e~~~l~~l~~~~--~iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~  146 (327)
T 3lm5_A           73 AEILHEIAVLELAKSCP--RVINLHEVYE----NTSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYY  146 (327)
T ss_dssp             HHHHHHHHHHHHTTTCT--TBCCEEEEEE----CSSEEEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCC--CEEEEEEEEE----eCCeEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence            35667889898886556  9999999998    577899999999 8999998866555679999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCC-cceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADH-VYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~-~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      ||+. |++||||||+||+++... ...++|+|||.++............+++.|+|||.+..      ..++.++|+||+
T Consensus       147 LH~~-givH~Dikp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~Diwsl  219 (327)
T 3lm5_A          147 LHQN-NIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHACELREIMGTPEYLAPEILNY------DPITTATDMWNI  219 (327)
T ss_dssp             HHHT-TEECSCCCGGGEEESCBTTBCCEEECCGGGCEEC---------CCCGGGCCHHHHTT------CCCCTHHHHHHH
T ss_pred             HHHC-CeecCcCChHHEEEecCCCCCcEEEeeCccccccCCccccccccCCcCccCCeeecC------CCCCchhhHHHH
Confidence            9996 999999999999998721 22499999999988765444445679999999999973      347789999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCC
Q psy320          162 KMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      |+..+      .+..|..+|.
T Consensus       220 G~il~------~ll~g~~pf~  234 (327)
T 3lm5_A          220 GIIAY------MLLTHTSPFV  234 (327)
T ss_dssp             HHHHH------HHHHSSCSSC
T ss_pred             HHHHH------HHHhCCCCCC
Confidence            86322      4444666664

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.96  E-value=2.2e-29  Score=204.63  Aligned_cols=146  Identities=18%  Similarity=0.157  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecC-CceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGI-NGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~-~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++.+ +||  ||+++++++...+. .....|+||||++++|.+++...  +.+++..++.++.|++.||.||
T Consensus        71 ~~~~E~~~l~~l-~h~--nIv~l~~~~~~~~~~~~~~~~lv~e~~~~~L~~~~~~~--~~l~~~~~~~i~~qil~aL~~L  145 (432)
T 3n9x_A           71 RILREITILNRL-KSD--YIIRLYDLIIPDDLLKFDELYIVLEIADSDLKKLFKTP--IFLTEEHIKTILYNLLLGENFI  145 (432)
T ss_dssp             HHHHHHHHHHHC-CCT--TBCCEEEECCCSCTTTCCCEEEEEECCSEEHHHHHHSS--CCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc-CCC--CcceEEEEEecCCCCcCCeEEEEEecCCcCHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHH
Confidence            456788888888 455  99999999974321 12579999999988999999765  4599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC-----------------------CCCCCCCccchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD-----------------------QQSSSKTKSKIFCEI  140 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~-----------------------~~~~~~~~~~~ape~  140 (202)
                      |+. ||+||||||+|||++.++.  +||+|||+|+.......                       .....+|+.|+|||+
T Consensus       146 H~~-givHrDlkp~NILl~~~~~--~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~  222 (432)
T 3n9x_A          146 HES-GIIHRDLKPANCLLNQDCS--VKVCDFGLARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPEL  222 (432)
T ss_dssp             HHT-TEECCCCCGGGEEECTTCC--EEECCCTTCEEC-------------------------------CCCCCTTCCHHH
T ss_pred             HHC-CCCCCCCCHHHeEECCCCC--EEEccCCCcccccccccccccccccccccccccccchhccccCCCCCccccCHHH
Confidence            995 9999999999999998876  99999999987643221                       124578999999999


Q ss_pred             HHhhhhccCCCCCCCcchhhHHH
Q psy320          141 LEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus       141 ~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      +..     ...++.++|+||+|+
T Consensus       223 ~~~-----~~~~~~~~DiwSlG~  240 (432)
T 3n9x_A          223 ILL-----QENYTKSIDIWSTGC  240 (432)
T ss_dssp             HTT-----CSCCCTHHHHHHHHH
T ss_pred             Hhc-----CCCCCcccccchHHH
Confidence            752     344788999999997

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.96  E-value=7.3e-30  Score=208.17  Aligned_cols=151  Identities=19%  Similarity=0.170  Sum_probs=119.2

Q ss_pred             HHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh-
Q psy320            8 NLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT-   85 (202)
Q Consensus         8 ~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~-   85 (202)
                      +|+++++.+ +  ||||++++++|.    .....|+||||+ +++|.+++....  .+++..+..++.|++.||.|||+ 
T Consensus       197 ~e~~~l~~l-~--h~~iv~l~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~LH~~  267 (446)
T 4ejn_A          197 TENRVLQNS-R--HPFLTALKYSFQ----THDRLCFVMEYANGGELFFHLSRER--VFSEDRARFYGAEIVSALDYLHSE  267 (446)
T ss_dssp             ----CCCCC-S--CTTSCCEEEEEE----ETTEEEEEECCCSSCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhC-C--CCeEeeEEEEEe----eCCEEEEEEeeCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHhhc
Confidence            455555444 3  569999999998    466899999999 899999998764  59999999999999999999998 


Q ss_pred             hCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHH
Q psy320           86 KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~  164 (202)
                      . ||+||||||+|||++.++.  +||+|||+|+...... ......||+.|+|||++..      ..++.++|+||+|+.
T Consensus       268 ~-giiHrDlkp~NIll~~~~~--~kl~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~DiwslG~i  338 (446)
T 4ejn_A          268 K-NVVYRDLKLENLMLDKDGH--IKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLED------NDYGRAVDWWGLGVV  338 (446)
T ss_dssp             T-CCCCCCCCGGGEEECSSSC--EEECCCCCCCTTCC-----CCSSSCGGGCCHHHHHT------SCCCTHHHHHHHHHH
T ss_pred             C-CEEECCCCHHHEEECCCCC--EEEccCCCceeccCCCcccccccCCccccCHhhcCC------CCCCCccchhhhHHH
Confidence            6 9999999999999998876  9999999998654322 2335689999999999973      347889999999863


Q ss_pred             HHHHHHHHHHHhcCCCCC
Q psy320          165 TTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~  182 (202)
                      .+      .++.|..+|.
T Consensus       339 l~------ell~g~~Pf~  350 (446)
T 4ejn_A          339 MY------EMMCGRLPFY  350 (446)
T ss_dssp             HH------HHHHSSCSSC
T ss_pred             HH------HHhhCCCCCC
Confidence            32      4444666664

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.96  E-value=4e-29  Score=195.51  Aligned_cols=158  Identities=23%  Similarity=0.283  Sum_probs=129.9

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ....+|+++++.+ +||  ||+++++++.    .....++||||+ +++|.+++...  +.+++..+..++.|++.||.|
T Consensus        60 ~~~~~E~~~l~~l-~h~--~iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~  130 (321)
T 2a2a_A           60 EEIEREVSILRQV-LHH--NVITLHDVYE----NRTDVVLILELVSGGELFDFLAQK--ESLSEEEATSFIKQILDGVNY  130 (321)
T ss_dssp             HHHHHHHHHHHHC-CCT--TBCCEEEEEE----CSSEEEEEECCCCSCBHHHHHHTC--SCEEHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CcceEEEEEe----cCCEEEEEEEcCCCCcHHHHHHhc--CCCCHHHHHHHHHHHHHHHHH
Confidence            3467899999988 455  9999999998    577999999999 89999999764  459999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCc--ceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHV--YIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~--~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      ||+. |++|+||||+||+++.++.  ..++|+|||.+.............+++.|+|||.+..      ..++.++|+||
T Consensus       131 lH~~-~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~Di~s  203 (321)
T 2a2a_A          131 LHTK-KIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNY------EPLGLEADMWS  203 (321)
T ss_dssp             HHHT-TEECCCCSGGGEEESCTTSSSCCEEECCCTTCEECCTTCCCCCCCSCGGGCCHHHHTT------CCCCTHHHHHH
T ss_pred             HHhC-CeecCCCChHHEEEecCCCCcCCEEEccCccceecCccccccccCCCCCccCcccccC------CCCCCccccHH
Confidence            9996 9999999999999987762  1399999999988765444445679999999999873      34778999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCC
Q psy320          161 IKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       161 l~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +|+..      ..+..|..+|..
T Consensus       204 lG~il------~~l~~g~~pf~~  220 (321)
T 2a2a_A          204 IGVIT------YILLSGASPFLG  220 (321)
T ss_dssp             HHHHH------HHHHHSCCSSCC
T ss_pred             HHHHH------HHHHHCCCCCCC
Confidence            98732      245557766643

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.96  E-value=8.3e-29  Score=189.66  Aligned_cols=155  Identities=19%  Similarity=0.291  Sum_probs=127.5

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +...+|+++++++ +||  ||++++++|.    .+...|+||||+ +++|.+++....  .+++..+..++.|++.||.|
T Consensus        51 ~~~~~E~~~l~~l-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~i~~~i~~~l~~  121 (277)
T 3f3z_A           51 DRFKQEIEIMKSL-DHP--NIIRLYETFE----DNTDIYLVMELCTGGELFERVVHKR--VFRESDAARIMKDVLSAVAY  121 (277)
T ss_dssp             HHHHHHHHHHHTC-CCT--TBCCEEEEEE----CSSEEEEEEECCCSCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CEeeEEEEEe----cCCeEEEEEeccCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHH
Confidence            3456788888888 455  9999999998    577899999999 889999987764  49999999999999999999


Q ss_pred             HHhhCCccccCCCCCceee---ecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           83 LHTKHNLVHTSIKPESIFF---KADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~---~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      ||++ |++|+||||+||++   +.++.  ++|+|||.+.............+++.|+|||.+..       .++.++|+|
T Consensus       122 lH~~-~i~H~dlkp~Nil~~~~~~~~~--~~l~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~-------~~~~~~Di~  191 (277)
T 3f3z_A          122 CHKL-NVAHRDLKPENFLFLTDSPDSP--LKLIDFGLAARFKPGKMMRTKVGTPYYVSPQVLEG-------LYGPECDEW  191 (277)
T ss_dssp             HHHT-TEECCCCSGGGEEESSSSTTCC--EEECCCTTCEECCTTSCBCCCCSCTTTCCHHHHTT-------CBCTTHHHH
T ss_pred             HHHC-CccCCCCCHHHEEEecCCCCCc--EEEEecccceeccCccchhccCCCCCccChHHhcc-------cCCchhheh
Confidence            9996 99999999999999   44444  99999999988765544456689999999998762       267899999


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCCC
Q psy320          160 SIKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       160 sl~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      |+|+..+      .+..|..+|..
T Consensus       192 slG~~l~------~l~~g~~p~~~  209 (277)
T 3f3z_A          192 SAGVMMY------VLLCGYPPFSA  209 (277)
T ss_dssp             HHHHHHH------HHHHSSCSSCC
T ss_pred             hHHHHHH------HHHHCCCCCCC
Confidence            9987333      44557777653

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.96  E-value=4e-29  Score=206.25  Aligned_cols=156  Identities=22%  Similarity=0.323  Sum_probs=127.7

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ....+|+++++.+ +||  ||++++++|.    .....|+||||+ +++|.+.+....  ++++..+..++.|++.||.|
T Consensus        81 ~~~~~E~~~l~~l-~hp--niv~~~~~~~----~~~~~~lv~e~~~~g~L~~~~~~~~--~~~~~~~~~i~~qi~~~l~~  151 (494)
T 3lij_A           81 SKLLEEVAVLKLL-DHP--NIMKLYDFFE----DKRNYYLVMECYKGGELFDEIIHRM--KFNEVDAAVIIKQVLSGVTY  151 (494)
T ss_dssp             HHHHHHHHHHTTC-CCT--TBCCEEEEEE----CSSEEEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CCCeEEEEEE----eCCEEEEEEecCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHH
Confidence            3456788888877 455  9999999998    677999999999 899999887764  49999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCC-cceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADH-VYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~-~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      ||+. |++||||||+|||++..+ ...+||+|||++.............+|+.|+|||++.       ..++.++|+||+
T Consensus       152 lH~~-~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~l~-------~~~~~~~Diwsl  223 (494)
T 3lij_A          152 LHKH-NIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQKKMKERLGTAYYIAPEVLR-------KKYDEKCDVWSI  223 (494)
T ss_dssp             HHHT-TEECSCCSGGGEEESCSSTTCCEEECCCTTCEECBTTBCBCCCCSCTTTCCHHHHT-------TCBCTHHHHHHH
T ss_pred             HHHC-CceeccCChhhEEEeCCCCCCcEEEEECCCCeECCCCccccccCCCcCeeCHHHHc-------ccCCCchhHHHH
Confidence            9996 999999999999997643 2349999999998876554445668999999999875       237889999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCC
Q psy320          162 KMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      |+..+      .+..|.++|.
T Consensus       224 G~il~------~ll~g~~pf~  238 (494)
T 3lij_A          224 GVILF------ILLAGYPPFG  238 (494)
T ss_dssp             HHHHH------HHHHSSCSSC
T ss_pred             HHHHH------HHHhCCCCCC
Confidence            86333      4444666664

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.96  E-value=4.6e-29  Score=206.34  Aligned_cols=156  Identities=24%  Similarity=0.286  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++++ +||  ||++++++|.    ++...|+||||+ +++|.+.+....  .+++..+..++.|++.||.||
T Consensus        92 ~~~~E~~~l~~l-~hp--niv~~~~~~~----~~~~~~lv~e~~~gg~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~l  162 (504)
T 3q5i_A           92 EIYNEISLLKSL-DHP--NIIKLFDVFE----DKKYFYLVTEFYEGGELFEQIINRH--KFDECDAANIMKQILSGICYL  162 (504)
T ss_dssp             HHHHHHHHHHTC-CCT--TBCCEEEEEE----CSSEEEEEEECCTTCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCC--CCCeEEEEEE----cCCEEEEEEecCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHH
Confidence            456788888888 455  9999999998    677999999999 899999987764  499999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCc-ceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHV-YIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~-~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |+. |++||||||+|||++.++. ..+||+|||++.............+++.|+|||++.       ..++.++|+||+|
T Consensus       163 H~~-~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~-------~~~~~~~DiwslG  234 (504)
T 3q5i_A          163 HKH-NIVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDYKLRDRLGTAYYIAPEVLK-------KKYNEKCDVWSCG  234 (504)
T ss_dssp             HHT-TEECSCCSGGGEEESSTTCCSSEEECCCTTCEECCTTSCBCCCCSCTTTCCHHHHT-------TCBCTHHHHHHHH
T ss_pred             HHC-CeEeCCCcHHHEEEecCCCCccEEEEECCCCEEcCCCCccccccCCcCCCCHHHhc-------cCCCchHHHHHHH
Confidence            996 9999999999999987653 249999999998876554445668999999999976       2377899999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +..+      .++.|.++|..
T Consensus       235 ~il~------~ll~g~~pf~~  249 (504)
T 3q5i_A          235 VIMY------ILLCGYPPFGG  249 (504)
T ss_dssp             HHHH------HHHHSSCSSCC
T ss_pred             HHHH------HHHhCCCCCCC
Confidence            7333      45557666653

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.96  E-value=6.4e-29  Score=199.71  Aligned_cols=161  Identities=18%  Similarity=0.243  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHhcCCCccceeeeeeeEEecC--CceEEEEEEccccccHHHHHHH--cCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            7 TNLIKTLIEIQKHPSDKLMKLLDHFQVTGI--NGTHVCTVTEIMAECLCNYMIR--QKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         7 ~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~--~~~~~~lv~e~~~~sL~~~~~~--~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      .+|+++++.+ +||  ||++++++|...+.  .....++||||+.+++.+.+..  ...+.+++..++.++.|++.||.|
T Consensus        80 ~~E~~il~~l-~h~--niv~l~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~  156 (394)
T 4e7w_A           80 NRELQIMRIV-KHP--NVVDLKAFFYSNGDKKDEVFLNLVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAY  156 (394)
T ss_dssp             CHHHHHHHTC-CCT--TBCCEEEEEEEESSSSSCEEEEEEEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhC-CCC--CcceEEEEEEecCCCCCceEEEEEeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Confidence            4688888888 455  99999999986552  3456889999996666555442  123569999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeee-cCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           83 LHTKHNLVHTSIKPESIFFK-ADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~-~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      ||+. ||+||||||+|||++ .++.  +||+|||+|+............+++.|+|||.+..     ...++.++|+||+
T Consensus       157 LH~~-~ivHrDlkp~Nill~~~~~~--~kL~DFG~a~~~~~~~~~~~~~~t~~y~aPE~~~~-----~~~~~~~~DiwSl  228 (394)
T 4e7w_A          157 IHSI-GICHRDIKPQNLLLDPPSGV--LKLIDFGSAKILIAGEPNVSYICSRYYRAPELIFG-----ATNYTTNIDIWST  228 (394)
T ss_dssp             HHHT-TEECSCCSGGGEEEETTTTE--EEECCCTTCEECCTTCCCCSSCSCGGGCCHHHHTT-----CSSCCTHHHHHHH
T ss_pred             HHHC-CccCCCCCHHHEEEcCCCCc--EEEeeCCCcccccCCCCCcccccCcCccCHHHHcC-----CCCCCcHHHHHHH
Confidence            9996 999999999999998 5555  99999999988754444445678999999999862     2347889999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCC
Q psy320          162 KMYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      |+.      +..+..|.++|...
T Consensus       229 G~i------l~ell~g~~pf~~~  245 (394)
T 4e7w_A          229 GCV------MAELMQGQPLFPGE  245 (394)
T ss_dssp             HHH------HHHHHHSSCSSCCS
T ss_pred             HHH------HHHHHhCCCCCCCC
Confidence            873      33555688887643

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.96  E-value=2e-29  Score=199.56  Aligned_cols=156  Identities=22%  Similarity=0.301  Sum_probs=113.2

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++++ +||  ||++++++|.    .+...++||||+ +++|.+++...  +.+++..++.++.|++.||.||
T Consensus        94 ~~~~E~~~l~~l-~h~--niv~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~L~~L  164 (349)
T 2w4o_A           94 IVRTEIGVLLRL-SHP--NIIKLKEIFE----TPTEISLVLELVTGGELFDRIVEK--GYYSERDAADAVKQILEAVAYL  164 (349)
T ss_dssp             -----CHHHHHC-CCT--TBCCEEEEEE----CSSEEEEEECCCCSCBHHHHHTTC--SSCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCC--CCcceeeeEe----cCCeEEEEEEeCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHH
Confidence            455788889888 455  9999999998    567999999999 89999998765  4599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeec-CCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKA-DHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~-~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |+. |++||||||+||+++. +....+||+|||.++............+++.|+|||.+...      .++.++|+||+|
T Consensus       165 H~~-~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~~DiwslG  237 (349)
T 2w4o_A          165 HEN-GIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVLMKTVCGTPGYCAPEILRGC------AYGPEVDMWSVG  237 (349)
T ss_dssp             HHT-TCCCCCCCGGGEEESSSSTTCCEEECCCC----------------CGGGSCHHHHTTC------CCCTHHHHHHHH
T ss_pred             HHC-CeEecCCCcccEEEecCCCCCCEEEccCccccccCcccccccccCCCCccCHHHhcCC------CCCcccchHHHH
Confidence            996 9999999999999986 12234999999999876544333456789999999998743      478899999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +..+      .+..|..+|.
T Consensus       238 ~il~------ell~g~~pf~  251 (349)
T 2w4o_A          238 IITY------ILLCGFEPFY  251 (349)
T ss_dssp             HHHH------HHHHSSCTTC
T ss_pred             HHHH------HHHhCCCCCC
Confidence            6322      4444655554

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.96  E-value=2.9e-29  Score=198.27  Aligned_cols=149  Identities=10%  Similarity=-0.020  Sum_probs=122.2

Q ss_pred             CCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCce
Q psy320           20 PSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESI   99 (202)
Q Consensus        20 ~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~ni   99 (202)
                      .||||+++++++..........|+||||++++|.+++....  .+++..+..++.|++.||.|||+. |++||||||+||
T Consensus       106 ~h~ni~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~LH~~-~ivH~Dlkp~NI  182 (345)
T 2v62_A          106 DYLGIPLFYGSGLTEFKGRSYRFMVMERLGIDLQKISGQNG--TFKKSTVLQLGIRMLDVLEYIHEN-EYVHGDIKAANL  182 (345)
T ss_dssp             SCCCCCCEEEEEEEESSSCEEEEEEEECEEEEHHHHCBGGG--BCCHHHHHHHHHHHHHHHHHHHHT-TEECSCCSGGGE
T ss_pred             cccCcceeecccccccCCCcEEEEEEeccCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHhC-CeeCCCcCHHHE
Confidence            35699999999986544578999999999999999987654  599999999999999999999996 999999999999


Q ss_pred             eeecCCcceeEEeecccccccccccCC--------CCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHHHHHHHH
Q psy320          100 FFKADHVYIMTLINIQQATTHQECHDQ--------QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTTFCEIL  171 (202)
Q Consensus       100 l~~~~~~~~~~l~Dfg~a~~~~~~~~~--------~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~~~~~~~  171 (202)
                      |++.++...+||+|||.++........        ....+++.|+|||.+...      .++.++|+||+|+..      
T Consensus       183 ll~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~~Di~slG~il------  250 (345)
T 2v62_A          183 LLGYKNPDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGV------ALSRRSDVEILGYCM------  250 (345)
T ss_dssp             EEESSSTTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTC------CCCHHHHHHHHHHHH------
T ss_pred             EEccCCCCcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCC------CCCchhhHHHHHHHH------
Confidence            999877334999999999876443211        234789999999998843      378899999999733      


Q ss_pred             HHHHhcCCCCCC
Q psy320          172 EQCRLNHQDFRP  183 (202)
Q Consensus       172 ~~~~~~~~~~~~  183 (202)
                      -.+..|..+|..
T Consensus       251 ~ell~g~~pf~~  262 (345)
T 2v62_A          251 LRWLCGKLPWEQ  262 (345)
T ss_dssp             HHHHHSSCTTGG
T ss_pred             HHHHhCCCCccc
Confidence            355558888753

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.96  E-value=2.6e-29  Score=199.37  Aligned_cols=159  Identities=18%  Similarity=0.174  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++.++.||  ||+++++++.    .....++||||+ +++|.+++....  .+++..++.++.|++.||.||
T Consensus       104 ~~~~E~~~l~~l~~h~--~iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~aL~~L  175 (355)
T 1vzo_A          104 HTRTERQVLEHIRQSP--FLVTLHYAFQ----TETKLHLILDYINGGELFTHLSQRE--RFTEHEVQIYVGEIVLALEHL  175 (355)
T ss_dssp             GCCCHHHHHHHHHTCT--TBCCEEEEEE----ETTEEEEEECCCCSCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCCC--ceeEEEEEEe----eCceEEEEeecCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHH
Confidence            3456899999996666  9999999998    456899999999 899999998764  499999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC--CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD--QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~--~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      |++ |++||||||+|||++.++.  +||+|||+++.......  .....+|+.|+|||.+....    ..++.++|+||+
T Consensus       176 H~~-~ivH~Dlkp~NIll~~~~~--~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~~~~Dvwsl  248 (355)
T 1vzo_A          176 HKL-GIIYRDIKLENILLDSNGH--VVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGD----SGHDKAVDWWSL  248 (355)
T ss_dssp             HHT-TCCCCCCCGGGEEECTTSC--EEESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC-------CTHHHHHHH
T ss_pred             HHC-CcccCCCCHHHEEECCCCc--EEEeeCCCCeecccCCCCcccCcccCcCccChhhhcCCC----CCCCchhhHHHH
Confidence            996 9999999999999998876  99999999987643222  22357899999999987321    335779999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCC
Q psy320          162 KMYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      |+..      ..+..|..+|...
T Consensus       249 G~il------~ell~g~~pf~~~  265 (355)
T 1vzo_A          249 GVLM------YELLTGASPFTVD  265 (355)
T ss_dssp             HHHH------HHHHHSSCTTSCT
T ss_pred             HHHH------HHHHHCCCCCccC
Confidence            8733      3555587777643

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.96  E-value=5.3e-29  Score=199.37  Aligned_cols=145  Identities=14%  Similarity=0.153  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC--------------CCCCCHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK--------------FQPAPLVVA   69 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~--------------~~~~~~~~~   69 (202)
                      ...+|+++++++.+||  ||++++++|.    .....|+||||+ +++|.+++....              .+.+++..+
T Consensus       120 ~~~~E~~~l~~l~~hp--nIv~~~~~~~----~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~  193 (382)
T 3tt0_A          120 DLISEMEMMKMIGKHK--NIINLLGACT----QDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDL  193 (382)
T ss_dssp             HHHHHHHHHHHHCCCT--TBCCEEEEEC----SSSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHH
T ss_pred             HHHHHHHHHHHhcCCc--hhhhheeeec----cCCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHH
Confidence            4567899999996566  9999999998    566799999999 889999998754              135999999


Q ss_pred             HHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC---CCCCCCCccchhhHHHHhhhh
Q psy320           70 KIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD---QQSSSKTKSKIFCEILEQCRL  146 (202)
Q Consensus        70 ~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~ape~~~~~~~  146 (202)
                      +.++.|++.||.|||+. |++||||||+|||++.++.  +||+|||.++.......   .....+++.|+|||.+..   
T Consensus       194 ~~i~~qi~~aL~~LH~~-~ivH~Dlkp~NIll~~~~~--~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~---  267 (382)
T 3tt0_A          194 VSCAYQVARGMEYLASK-KCIHRDLAARNVLVTEDNV--MKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFD---  267 (382)
T ss_dssp             HHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEECTTCC--EEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHS---
T ss_pred             HHHHHHHHHHHHHHHhC-CEecCCCCcceEEEcCCCc--EEEcccCcccccccccccccccCCCCCcceeCHHHhcC---
Confidence            99999999999999996 9999999999999998876  99999999987654221   223456788999999973   


Q ss_pred             ccCCCCCCCcchhhHHHH
Q psy320          147 NQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus       147 ~~~~~~~~~~Diwsl~~~  164 (202)
                         ..++.++|+||+|+.
T Consensus       268 ---~~~~~~~DiwslG~i  282 (382)
T 3tt0_A          268 ---RIYTHQSDVWSFGVL  282 (382)
T ss_dssp             ---CCCCHHHHHHHHHHH
T ss_pred             ---CCCCchhHHHHHHHH
Confidence               347789999999863

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.96  E-value=3.7e-29  Score=195.89  Aligned_cols=154  Identities=14%  Similarity=0.194  Sum_probs=126.2

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +...+|+++++.+ +||  ||+++++++.    .+...++||||+ +++|.+++..   .++++..+..++.|++.||.|
T Consensus        87 ~~~~~E~~~l~~l-~h~--niv~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~---~~l~~~~~~~i~~qi~~~L~~  156 (321)
T 2c30_A           87 ELLFNEVVIMRDY-QHF--NVVEMYKSYL----VGEELWVLMEFLQGGALTDIVSQ---VRLNEEQIATVCEAVLQALAY  156 (321)
T ss_dssp             HHHHHHHHHHTTC-CCT--TBCCEEEEEE----ETTEEEEEECCCCSCBHHHHHTT---CCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CcceEEEEEE----ECCEEEEEEecCCCCCHHHHHHh---cCCCHHHHHHHHHHHHHHHHH
Confidence            3456788888777 455  9999999998    456899999999 9999998864   349999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      ||+. |++||||||+||+++.++.  +||+|||.+....... ......+++.|+|||.+..      ..++.++|+||+
T Consensus       157 LH~~-~ivH~Dlkp~NIll~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~Dv~sl  227 (321)
T 2c30_A          157 LHAQ-GVIHRDIKSDSILLTLDGR--VKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISR------SLYATEVDIWSL  227 (321)
T ss_dssp             HHHT-TEECCCCSGGGEEECTTCC--EEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTT------CCBCTHHHHHHH
T ss_pred             HHHC-CeecCCCCHHHEEECCCCc--EEEeeeeeeeecccCccccccccCCccccCHhhhcC------CCCCchhhHHHH
Confidence            9996 9999999999999998876  9999999998765432 2234679999999999973      347789999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCC
Q psy320          162 KMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      |+..+      .+..|.++|.
T Consensus       228 G~il~------el~~g~~pf~  242 (321)
T 2c30_A          228 GIMVI------EMVDGEPPYF  242 (321)
T ss_dssp             HHHHH------HHHHSSCTTT
T ss_pred             HHHHH------HHHhCCCCCC
Confidence            87332      4555777664

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.96  E-value=1.7e-29  Score=198.16  Aligned_cols=155  Identities=12%  Similarity=0.130  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+++++.+ +||  ||++++++|.    .+...|+||||+ +++|.+++.... +.+++..+..++.|++.||.||
T Consensus        96 ~~~~E~~~l~~l-~h~--~iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~L~~L  167 (325)
T 3kul_A           96 DFLSEASIMGQF-DHP--NIIRLEGVVT----RGRLAMIVTEYMENGSLDTFLRTHD-GQFTIMQLVGMLRGVGAGMRYL  167 (325)
T ss_dssp             HHHHHHHHHTTC-CCT--TBCCEEEEEC----GGGCCEEEEECCTTCBHHHHHHTTT-TCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCC--CCCcEEEEEE----eCCccEEEeeCCCCCcHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHH
Confidence            456788888877 455  9999999998    567899999999 889999996543 4599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC----CCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ----QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~----~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      |+. |++||||||+|||++.++.  ++|+|||.++........    ....+++.|+|||.+....      ++.++|+|
T Consensus       168 H~~-~ivH~Dlkp~NIll~~~~~--~kl~Dfg~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~------~~~~~Di~  238 (325)
T 3kul_A          168 SDL-GYVHRDLAARNVLVDSNLV--CKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAIAFRT------FSSASDVW  238 (325)
T ss_dssp             HHT-TEECSCCSGGGEEECTTCC--EEECCCSSCEECC----CCEECC---CCGGGSCHHHHHHCE------ECHHHHHH
T ss_pred             HHC-CeeCCCCCcceEEECCCCC--EEECCCCcccccccCccceeeccCCCCcccccCHhHhcCCC------CCcHHHHH
Confidence            996 9999999999999988776  999999999876543211    1234577899999998544      77899999


Q ss_pred             hHHHHHHHHHHHHHHHh-cCCCCC
Q psy320          160 SIKMYTTFCEILEQCRL-NHQDFR  182 (202)
Q Consensus       160 sl~~~~~~~~~~~~~~~-~~~~~~  182 (202)
                      |+|+..+      .++. |..+|.
T Consensus       239 slG~il~------ell~~g~~p~~  256 (325)
T 3kul_A          239 SFGVVMW------EVLAYGERPYW  256 (325)
T ss_dssp             HHHHHHH------HHHTTSCCTTT
T ss_pred             HHHHHHH------HHHcCCCCCcc
Confidence            9986322      3333 666653

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.96  E-value=2.3e-29  Score=197.05  Aligned_cols=163  Identities=13%  Similarity=0.135  Sum_probs=127.0

Q ss_pred             HHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q psy320            8 NLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTK   86 (202)
Q Consensus         8 ~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~   86 (202)
                      +|+..++++ +  ||||+++++++..........|+||||+ +++|.+++...   .+++..++.++.|++.||.|||+ 
T Consensus        67 ~E~~~l~~l-~--hpniv~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~qi~~al~~LH~-  139 (322)
T 3soc_A           67 YEVYSLPGM-K--HENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKAN---VVSWNELCHIAETMARGLAYLHE-  139 (322)
T ss_dssp             HHHHTSTTC-C--CTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHhcC-C--CCCchhhcceeccCCCCCceEEEEEecCCCCCHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHh-
Confidence            355555555 3  5599999999997665567899999999 88999999764   39999999999999999999999 


Q ss_pred             C----------CccccCCCCCceeeecCCcceeEEeecccccccccccC---CCCCCCCccchhhHHHHhhhhccCCCCC
Q psy320           87 H----------NLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD---QQSSSKTKSKIFCEILEQCRLNQDFRLD  153 (202)
Q Consensus        87 ~----------~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~ape~~~~~~~~~~~~~~  153 (202)
                      .          |++||||||+|||++.++.  +||+|||.++.......   .....+++.|+|||.+..... ....++
T Consensus       140 ~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~--~kL~DFg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~~~  216 (322)
T 3soc_A          140 DIPGLKDGHKPAISHRDIKSKNVLLKNNLT--ACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAIN-FQRDAF  216 (322)
T ss_dssp             CEEEETTEEECEEECSCCSGGGEEECTTCC--EEECCCTTCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCC-CCHHHH
T ss_pred             hccccccccCCCEEeCCCChHhEEECCCCe--EEEccCCcccccccccCccccccCccCccccCHhhcccccc-cCcCCC
Confidence            6          9999999999999988776  99999999987654322   223578999999999874210 001244


Q ss_pred             CCcchhhHHHHHHHHHHHHHHHhcCCCCCCCCC
Q psy320          154 PRVDPTSIKMYTTFCEILEQCRLNHQDFRPDPR  186 (202)
Q Consensus       154 ~~~Diwsl~~~~~~~~~~~~~~~~~~~~~~~~~  186 (202)
                      .++|+||+|+.      +-.+..|.++|....+
T Consensus       217 ~~~DiwslG~i------l~el~tg~~pf~~~~~  243 (322)
T 3soc_A          217 LRIDMYAMGLV------LWELASRCTAADGPVD  243 (322)
T ss_dssp             HHHHHHHHHHH------HHHHHTTBTTSSSCCC
T ss_pred             ccchhHHHHHH------HHHHHhCCCCCCCCcc
Confidence            57899999973      3366668887765443

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.96  E-value=9.8e-29  Score=200.16  Aligned_cols=162  Identities=16%  Similarity=0.226  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecC--CceEEEEEEccccccHHHHHHH--cCCCCCCHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGI--NGTHVCTVTEIMAECLCNYMIR--QKFQPAPLVVAKIIVNQILEGLN   81 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~--~~~~~~lv~e~~~~sL~~~~~~--~~~~~~~~~~~~~~~~qi~~~l~   81 (202)
                      ..+|+++++.+ +||  ||++++++|...+.  +..+.++||||+.+++.+++..  ...+.+++..++.++.|++.||.
T Consensus        94 ~~~E~~il~~l-~hp--niv~l~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~  170 (420)
T 1j1b_A           94 KNRELQIMRKL-DHC--NIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLA  170 (420)
T ss_dssp             CCHHHHHHHTC-CCT--TBCCEEEEEEEEETTTTEEEEEEEEECCCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHc-CCC--CccceeeEEeccCCCCcceeEEeehhcccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHH
Confidence            34688888888 455  99999999976543  2456789999997788777653  22356999999999999999999


Q ss_pred             HHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           82 HLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        82 ~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      |||+. ||+||||||+|||++.++. .+||+|||+++............+++.|+|||++..     ...++.++|+||+
T Consensus       171 ~LH~~-~ivHrDlkp~NILl~~~~~-~~kl~DFG~a~~~~~~~~~~~~~~t~~y~aPE~~~~-----~~~~~~~~DiwSl  243 (420)
T 1j1b_A          171 YIHSF-GICHRDIKPQNLLLDPDTA-VLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFG-----ATDYTSSIDVWSA  243 (420)
T ss_dssp             HHHTT-TEECSCCSGGGEEEETTTT-EEEECCCTTCEECCTTCCCCSCCSCTTSCCHHHHTT-----CSSCCTHHHHHHH
T ss_pred             HHHHC-CccccCCChhhEEEeCCCC-eEEeccchhhhhcccCCCceeeeeCCCcCCHHHHcC-----CCCCCchhhhHHH
Confidence            99996 9999999999999996543 489999999987654433445678999999999873     2347889999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCC
Q psy320          162 KMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      |+.      +..++.|.++|..
T Consensus       244 G~i------l~ell~G~~pf~~  259 (420)
T 1j1b_A          244 GCV------LAELLLGQPIFPG  259 (420)
T ss_dssp             HHH------HHHHHHSSCSSCC
T ss_pred             HHH------HHHHHhCCCCCCC
Confidence            873      3355557777754

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.96  E-value=7.3e-29  Score=197.36  Aligned_cols=168  Identities=27%  Similarity=0.377  Sum_probs=134.4

Q ss_pred             hHHHHHHHHHHHHhcCC--------CccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHP--------SDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQ   75 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~--------h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~q   75 (202)
                      ....+|+++++++....        |+||+++++++...+.++...++|||+++++|.+++.....+++++..+..++.|
T Consensus        60 ~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~q  139 (373)
T 1q8y_A           60 EAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQ  139 (373)
T ss_dssp             HHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhccCCCCceEEEEEecCCCCHHHHHHHhhccCCcHHHHHHHHHH
Confidence            34567899999885322        5699999999997766677999999999999999998866667999999999999


Q ss_pred             HHHHHHHHHhhCCccccCCCCCceeeecCC----cceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCC
Q psy320           76 ILEGLNHLHTKHNLVHTSIKPESIFFKADH----VYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFR  151 (202)
Q Consensus        76 i~~~l~~lh~~~~ivH~dl~p~nil~~~~~----~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~  151 (202)
                      ++.||.|||+++|++||||||+|||++.++    ...+||+|||.+.....  ......+|+.|+|||.+...      .
T Consensus       140 i~~aL~~lH~~~~ivH~Dikp~NIll~~~~~~~~~~~~kl~Dfg~a~~~~~--~~~~~~~t~~y~aPE~~~~~------~  211 (373)
T 1q8y_A          140 LLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDE--HYTNSIQTREYRSPEVLLGA------P  211 (373)
T ss_dssp             HHHHHHHHHHTTCEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETTB--CCCSCCSCGGGCCHHHHHTC------C
T ss_pred             HHHHHHHHHhcCCEEecCCChHHeEEeccCCCcCcceEEEcccccccccCC--CCCCCCCCccccCcHHHhCC------C
Confidence            999999999944999999999999996532    22499999999987643  22345789999999999843      3


Q ss_pred             CCCCcchhhHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy320          152 LDPRVDPTSIKMYTTFCEILEQCRLNHQDFRPDP  185 (202)
Q Consensus       152 ~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~~~~  185 (202)
                      ++.++|+||+|+.      +..+..|.++|....
T Consensus       212 ~~~~~Di~slG~i------l~el~~g~~pf~~~~  239 (373)
T 1q8y_A          212 WGCGADIWSTACL------IFELITGDFLFEPDE  239 (373)
T ss_dssp             CCTHHHHHHHHHH------HHHHHHSSCCC----
T ss_pred             CCchHhHHHHHHH------HHHHHhCCCCCCCCc
Confidence            7889999999973      336666988887654

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.96  E-value=5.4e-29  Score=205.06  Aligned_cols=157  Identities=22%  Similarity=0.307  Sum_probs=126.7

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ....+|+++++++ +||  ||+++++++.    .....|+||||+ +++|.+.+....  ++++..+..++.|++.||.|
T Consensus        66 ~~~~~E~~~l~~l-~hp--niv~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~i~~qi~~al~~  136 (486)
T 3mwu_A           66 STILREVELLKKL-DHP--NIMKLFEILE----DSSSFYIVGELYTGGELFDEIIKRK--RFSEHDAARIIKQVFSGITY  136 (486)
T ss_dssp             HHHHHHHHHHHHC-CCT--TBCCEEEEEE----CSSEEEEEECCCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CcCeEEEEEE----cCCEEEEEEEcCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHH
Confidence            3456899999998 555  9999999998    677999999999 899999887763  59999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCC-cceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADH-VYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~-~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      ||+. ||+||||||+|||++..+ ...+||+|||+++............+|+.|+|||++..       .++.++|+||+
T Consensus       137 lH~~-~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~-------~~~~~~Diwsl  208 (486)
T 3mwu_A          137 MHKH-NIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRG-------TYDEKCDVWSA  208 (486)
T ss_dssp             HHHT-TCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBCCC----CCTTGGGGCCGGGGGS-------CCCHHHHHHHH
T ss_pred             HHHC-CeEeccCchHHEEEecCCCCCCEEEEECCcCeECCCCCccCCCcCCCCCCCHHHhCC-------CCCchhhHHHH
Confidence            9996 999999999999996532 23499999999987754444445679999999999862       37789999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCC
Q psy320          162 KMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      |+..+      .+..|.++|..
T Consensus       209 G~il~------~ll~g~~pf~~  224 (486)
T 3mwu_A          209 GVILY------ILLSGTPPFYG  224 (486)
T ss_dssp             HHHHH------HHHHSSCSSCC
T ss_pred             HHHHH------HHHhCCCCCCC
Confidence            86332      45557666643

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.96  E-value=1.6e-29  Score=198.22  Aligned_cols=157  Identities=17%  Similarity=0.160  Sum_probs=127.9

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+.+++.+ +||  ||+++++++.    .+...|+||||+ +++|.+++...  +.+++..++.++.|++.||.||
T Consensus        51 ~~~~E~~~l~~l-~hp--nIv~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~aL~~L  121 (323)
T 3tki_A           51 NIKKEICINKML-NHE--NVVKFYGHRR----EGNIQYLFLEYCSGGELFDRIEPD--IGMPEPDAQRFFHQLMAGVVYL  121 (323)
T ss_dssp             CHHHHHHHHHHC-CCT--TBCCEEEEEE----CSSEEEEEEECCTTEEGGGGSBTT--TBCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCC--CCCeEEEEEe----cCCeEEEEEEcCCCCcHHHHHhhc--CCCCHHHHHHHHHHHHHHHHHH
Confidence            456788888888 555  9999999998    677999999999 89999988654  4599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc---CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH---DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~---~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      |+. |++||||||+|||++.++.  +||+|||.+.......   ......+++.|+|||.+....     .++.++|+||
T Consensus       122 H~~-givH~Dlkp~NIll~~~~~--~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~~~~Diws  193 (323)
T 3tki_A          122 HGI-GITHRDIKPENLLLDERDN--LKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRRE-----FHAEPVDVWS  193 (323)
T ss_dssp             HHT-TEECSCCSGGGEEECTTCC--EEECCCTTCEECEETTEECCBCSCCSCGGGSCHHHHHCSS-----BCHHHHHHHH
T ss_pred             HHC-CccccccchHHEEEeCCCC--EEEEEeeccceeccCCcccccCCCccCcCccCcHHhccCC-----CCCCcccHHH
Confidence            996 9999999999999998877  9999999998764322   122467999999999997322     1245899999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCC
Q psy320          161 IKMYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       161 l~~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      +|+.      +..++.|..+|...
T Consensus       194 lG~i------l~~ll~g~~pf~~~  211 (323)
T 3tki_A          194 CGIV------LTAMLAGELPWDQP  211 (323)
T ss_dssp             HHHH------HHHHHHSSCSCSSS
T ss_pred             HHHH------HHHHHhCCCCCCCC
Confidence            9973      33566688888543

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.96  E-value=7.6e-29  Score=198.47  Aligned_cols=160  Identities=17%  Similarity=0.274  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHhcCCCccceeeeeeeEEec----------------------------------CCceEEEEEEccccccH
Q psy320            7 TNLIKTLIEIQKHPSDKLMKLLDHFQVTG----------------------------------INGTHVCTVTEIMAECL   52 (202)
Q Consensus         7 ~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~----------------------------------~~~~~~~lv~e~~~~sL   52 (202)
                      .+|+++++.+ +||  ||++++++|...+                                  ....+.++||||+.++|
T Consensus        48 ~~E~~il~~l-~hp--nIv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L  124 (383)
T 3eb0_A           48 NRELDIMKVL-DHV--NIIKLVDYFYTTGDEEPKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPDTL  124 (383)
T ss_dssp             CHHHHHHTTC-CCT--TBCCEEEEEEEC-------------------------------------CCEEEEEECCCSEEH
T ss_pred             HHHHHHHHHc-CCC--CccchhheeeecCcccccccccccccccccccccccccccccccccCCCceEEEEEEecCCccH
Confidence            4688888888 455  9999999996533                                  13456999999998888


Q ss_pred             HHHHHH--cCCCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeec-CCcceeEEeecccccccccccCCCCC
Q psy320           53 CNYMIR--QKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKA-DHVYIMTLINIQQATTHQECHDQQSS  129 (202)
Q Consensus        53 ~~~~~~--~~~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~-~~~~~~~l~Dfg~a~~~~~~~~~~~~  129 (202)
                      .+.+..  ...+.+++..++.++.|++.||.|||+. |++||||||+||+++. ++.  +||+|||.|+...........
T Consensus       125 ~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~-gi~H~Dikp~Nil~~~~~~~--~kl~Dfg~a~~~~~~~~~~~~  201 (383)
T 3eb0_A          125 HKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIHSL-GICHRDIKPQNLLVNSKDNT--LKLCDFGSAKKLIPSEPSVAY  201 (383)
T ss_dssp             HHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTT-TEECSCCCGGGEEEETTTTE--EEECCCTTCEECCTTSCCCCC
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC-cCccCccCHHHEEEcCCCCc--EEEEECCCCcccCCCCCCcCc
Confidence            887764  2235699999999999999999999996 9999999999999984 454  999999999877555445566


Q ss_pred             CCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCC
Q psy320          130 SKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       130 ~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      .+++.|+|||.+..     ...++.++|+||+|+.      +..+..|.++|..
T Consensus       202 ~~t~~y~aPE~~~~-----~~~~~~~~DiwslG~i------l~ell~g~~pf~~  244 (383)
T 3eb0_A          202 ICSRFYRAPELMLG-----ATEYTPSIDLWSIGCV------FGELILGKPLFSG  244 (383)
T ss_dssp             CCCSSCCCHHHHTT-----CSSCCTHHHHHHHHHH------HHHHHHSSCSSCC
T ss_pred             ccCCCccCHHHhcC-----CCCCCcchhhhhHHHH------HHHHHhCCCCCCC
Confidence            78999999999872     2347889999999873      3355557777764

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.96  E-value=4.9e-29  Score=198.84  Aligned_cols=158  Identities=20%  Similarity=0.239  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEec--CCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTG--INGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~--~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      .+.+|+++++.+ +||  ||++++++|...+  ......|+||||+.++|.+.+..    .+++..+..++.|++.||.|
T Consensus        70 ~~~~E~~~l~~l-~hp--niv~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~----~~~~~~~~~i~~qi~~al~~  142 (371)
T 2xrw_A           70 RAYRELVLMKCV-NHK--NIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQM----ELDHERMSYLLYQMLCGIKH  142 (371)
T ss_dssp             HHHHHHHHHHHC-CCT--TBCCEEEEECSCCSTTTCCEEEEEEECCSEEHHHHHHS----CCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc-CCC--CccceEEeeccccccccccceEEEEEcCCCCHHHHHhh----ccCHHHHHHHHHHHHHHHHH
Confidence            355788888888 455  9999999997432  12348999999998889888853    38999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      ||++ |++||||||+|||++.++.  +||+|||.++............+++.|+|||.+..      ..++.++|+||+|
T Consensus       143 lH~~-~ivH~Dlkp~NIl~~~~~~--~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~DiwslG  213 (371)
T 2xrw_A          143 LHSA-GIIHRDLKPSNIVVKSDCT--LKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILG------MGYKENVDIWSVG  213 (371)
T ss_dssp             HHHT-TCCCSCCCGGGEEECTTSC--EEECCCCC----------------CTTCCHHHHTT------CCCCTTHHHHHHH
T ss_pred             HHHC-CeecccCCHHHEEEcCCCC--EEEEEeecccccccccccCCceecCCccCHHHhcC------CCCCchHhHHHHH
Confidence            9996 9999999999999998876  99999999987654333345678999999999984      3478899999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      +.      +..+..|.++|...
T Consensus       214 ~i------l~el~~g~~pf~~~  229 (371)
T 2xrw_A          214 CI------MGEMIKGGVLFPGT  229 (371)
T ss_dssp             HH------HHHHHHSSCSSCCS
T ss_pred             HH------HHHHHhCCCCCCCC
Confidence            73      33555688887653

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.96  E-value=1.1e-28  Score=192.42  Aligned_cols=166  Identities=17%  Similarity=0.222  Sum_probs=126.6

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ....+|++.+.++.+||  ||+++++++.    .+...|+||||+ +++|.+++....  .+++..++.++.|++.||.|
T Consensus        55 ~~~~~E~~~l~~~~~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~  126 (316)
T 2ac3_A           55 SRVFREVEMLYQCQGHR--NVLELIEFFE----EEDRFYLVFEKMRGGSILSHIHKRR--HFNELEASVVVQDVASALDF  126 (316)
T ss_dssp             HHHHHHHHHHHHTCCCT--TBCCEEEEEE----ETTEEEEEEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCC--CeeeEEEEEe----eCCEEEEEEEcCCCCcHHHHHhccC--CCCHHHHHHHHHHHHHHHHH
Confidence            44667888888865566  9999999998    466999999999 899999998763  49999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCc-ceeEEeecccccccccccC--------CCCCCCCccchhhHHHHhhhhccCCCCC
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHV-YIMTLINIQQATTHQECHD--------QQSSSKTKSKIFCEILEQCRLNQDFRLD  153 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~-~~~~l~Dfg~a~~~~~~~~--------~~~~~~~~~~~ape~~~~~~~~~~~~~~  153 (202)
                      ||+. |++||||||+||+++.++. ..+||+|||.+........        .....+++.|+|||.+..... ....++
T Consensus       127 lH~~-~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~~~  204 (316)
T 2ac3_A          127 LHNK-GIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSE-EASIYD  204 (316)
T ss_dssp             HHHT-TCCCCCCCGGGEEESCSSSSCSEEECCTTCCC-------------------CCSGGGCCHHHHHHTSH-HHHHHT
T ss_pred             HHhC-CceeCCCCHHHEEEccCCCcCceEEEEccCccccccCCccccccccccccccCCcCccChHHhhcccc-cccCCC
Confidence            9996 9999999999999987653 2389999999886542211        113468999999999974110 011267


Q ss_pred             CCcchhhHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy320          154 PRVDPTSIKMYTTFCEILEQCRLNHQDFRPDP  185 (202)
Q Consensus       154 ~~~Diwsl~~~~~~~~~~~~~~~~~~~~~~~~  185 (202)
                      .++|+||+|+.      +..+..|.++|....
T Consensus       205 ~~~DiwslG~i------l~~l~~g~~pf~~~~  230 (316)
T 2ac3_A          205 KRCDLWSLGVI------LYILLSGYPPFVGRC  230 (316)
T ss_dssp             TTHHHHHHHHH------HHHHHHSSCSCCCCC
T ss_pred             cccccHhHHHH------HHHHHHCCCCCcccc
Confidence            79999999973      335666888887544

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.96  E-value=1.6e-28  Score=194.22  Aligned_cols=162  Identities=16%  Similarity=0.160  Sum_probs=126.9

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecC----CceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGI----NGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEG   79 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~----~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~   79 (202)
                      ..+.+|+++++.+ +||  ||+++++++.....    .+...|+||||+.++|.+.+.... +++++..++.++.|++.|
T Consensus        61 ~~~~~E~~~l~~l-~h~--~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~l~~~~-~~~~~~~~~~i~~qi~~~  136 (351)
T 3mi9_A           61 ITALREIKILQLL-KHE--NVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVL-VKFTLSEIKRVMQMLLNG  136 (351)
T ss_dssp             HHHHHHHHHHHHC-CCT--TBCCEEEEEEEC--------CEEEEEEECCSEEHHHHHHCTT-SCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc-cCC--CcccHhheeeccccccccCCceEEEEEeccCCCHHHHHhhcc-CCCCHHHHHHHHHHHHHH
Confidence            3566899999998 455  99999999985321    145799999999888888886543 459999999999999999


Q ss_pred             HHHHHhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-----CCCCCCCCccchhhHHHHhhhhccCCCCCC
Q psy320           80 LNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-----DQQSSSKTKSKIFCEILEQCRLNQDFRLDP  154 (202)
Q Consensus        80 l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-----~~~~~~~~~~~~ape~~~~~~~~~~~~~~~  154 (202)
                      |.|||+. |++||||||+|||++.++.  +||+|||.++......     ......+++.|+|||.+..     ...++.
T Consensus       137 l~~LH~~-~ivH~Dlkp~NIl~~~~~~--~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~  208 (351)
T 3mi9_A          137 LYYIHRN-KILHRDMKAANVLITRDGV--LKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLG-----ERDYGP  208 (351)
T ss_dssp             HHHHHHT-TEECCCCSGGGEEECTTSC--EEECCCTTCEECCCCSSSSCCCCCSSCSCGGGCCHHHHTT-----CCSCCT
T ss_pred             HHHHHHC-CeeCCCCCHHHEEEcCCCC--EEEccchhcccccccccccccccCCcccccCccCchhhcC-----CCCCCc
Confidence            9999996 9999999999999998877  9999999998764321     1223578999999999863     234678


Q ss_pred             CcchhhHHHHHHHHHHHHHHHhcCCCCCC
Q psy320          155 RVDPTSIKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       155 ~~Diwsl~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      ++|+||+|+..+      .+..|.++|..
T Consensus       209 ~~DiwslG~il~------ell~g~~pf~~  231 (351)
T 3mi9_A          209 PIDLWGAGCIMA------EMWTRSPIMQG  231 (351)
T ss_dssp             HHHHHHHHHHHH------HHHHSSCSCCC
T ss_pred             HhHHHHHHHHHH------HHHhCCCCCCC
Confidence            999999987322      44456666643

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.96  E-value=3.1e-29  Score=197.49  Aligned_cols=141  Identities=23%  Similarity=0.260  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cc-cHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AE-CLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~-sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ..+|+++++++ +||  ||++++++|.    .....++||||+ ++ +|.+++...  +.+++..++.++.|++.||.||
T Consensus        76 ~~~E~~~l~~l-~h~--~Iv~~~~~~~----~~~~~~lv~e~~~~g~~l~~~~~~~--~~l~~~~~~~i~~qi~~~L~~L  146 (335)
T 3dls_A           76 VTLEIAILSRV-EHA--NIIKVLDIFE----NQGFFQLVMEKHGSGLDLFAFIDRH--PRLDEPLASYIFRQLVSAVGYL  146 (335)
T ss_dssp             EEHHHHHHTTC-CCT--TBCCEEEEEE----CSSEEEEEEECCTTSCBHHHHHHTC--CCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCC--CEeeEEEEEe----eCCEEEEEEEeCCCCccHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHH
Confidence            34688888888 555  9999999998    677999999998 44 999998765  3599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCC-CCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRL-DPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~-~~~~Diwsl~  162 (202)
                      |++ |++||||||+|||++.++.  +||+|||.+.............+++.|+|||.+....      + +.++|+||+|
T Consensus       147 H~~-~ivH~Dlkp~NIll~~~~~--~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~------~~~~~~DiwslG  217 (335)
T 3dls_A          147 RLK-DIIHRDIKDENIVIAEDFT--IKLIDFGSAAYLERGKLFYTFCGTIEYCAPEVLMGNP------YRGPELEMWSLG  217 (335)
T ss_dssp             HHT-TEECSCCSGGGEEECTTSC--EEECCCTTCEECCTTCCBCEECSCGGGCCHHHHTTCC------BCSHHHHHHHHH
T ss_pred             HhC-CeEEeccCHHHEEEcCCCc--EEEeecccceECCCCCceeccCCCccccChhhhcCCC------CCCCcccchhHH
Confidence            996 9999999999999998876  9999999998775544444567999999999997332      4 5689999998


Q ss_pred             HH
Q psy320          163 MY  164 (202)
Q Consensus       163 ~~  164 (202)
                      +.
T Consensus       218 ~i  219 (335)
T 3dls_A          218 VT  219 (335)
T ss_dssp             HH
T ss_pred             HH
Confidence            63

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.96  E-value=9.4e-29  Score=190.41  Aligned_cols=146  Identities=17%  Similarity=0.270  Sum_probs=114.8

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC--CCCCCHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK--FQPAPLVVAKIIVNQILEGL   80 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~--~~~~~~~~~~~~~~qi~~~l   80 (202)
                      ....+|+++++++ +||  ||+++++++.    .....|+||||+ +++|.+++....  .+.+++..++.++.|++.||
T Consensus        65 ~~~~~E~~~l~~l-~hp--~iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L  137 (285)
T 3is5_A           65 EQIEAEIEVLKSL-DHP--NIIKIFEVFE----DYHNMYIVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNAL  137 (285)
T ss_dssp             HHHHHHHHHHHTC-CCT--TBCCEEEEEE----CSSEEEEEECCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCc--hHHhHHHhee----cCCeEEEEEEeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHH
Confidence            4456788888888 455  9999999998    567899999999 889999886432  34599999999999999999


Q ss_pred             HHHHhhCCccccCCCCCceeeecCC-cceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           81 NHLHTKHNLVHTSIKPESIFFKADH-VYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        81 ~~lh~~~~ivH~dl~p~nil~~~~~-~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      .|||++ |++|+||||+||+++.+. ...++|+|||.+.............+++.|+|||.+.       ..++.++|+|
T Consensus       138 ~~LH~~-~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~-------~~~~~~~Di~  209 (285)
T 3is5_A          138 AYFHSQ-HVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDEHSTNAAGTALYMAPEVFK-------RDVTFKCDIW  209 (285)
T ss_dssp             HHHHHT-TCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC----------CTTGGGCCHHHHT-------TCCCHHHHHH
T ss_pred             HHHHhC-CEEECCCCHHHEEEecCCCCCCEEEEeeecceecCCcccCcCcccccCcCChHHhc-------cCCCcccCee
Confidence            999996 999999999999996432 2349999999998765544444567999999999875       2366799999


Q ss_pred             hHHHH
Q psy320          160 SIKMY  164 (202)
Q Consensus       160 sl~~~  164 (202)
                      |+|+.
T Consensus       210 slG~i  214 (285)
T 3is5_A          210 SAGVV  214 (285)
T ss_dssp             HHHHH
T ss_pred             hHHHH
Confidence            99863

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.96  E-value=1.7e-28  Score=188.51  Aligned_cols=156  Identities=17%  Similarity=0.204  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++++ +||  ||+++++++.    .+...++||||+ +++|.+.+....  .+++..+..++.|++.||.||
T Consensus        51 ~~~~e~~~l~~l-~h~--~i~~~~~~~~----~~~~~~~v~e~~~~~~l~~~~~~~~--~~~~~~~~~~~~~i~~~l~~l  121 (284)
T 3kk8_A           51 KLEREARICRKL-QHP--NIVRLHDSIQ----EESFHYLVFDLVTGGELFEDIVARE--FYSEADASHCIQQILESIAYC  121 (284)
T ss_dssp             HHHHHHHHHHHC-CCT--TBCCEEEEEE----CSSEEEEEECCCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc-CCC--CcCeEEEEEE----cCCEEEEEEecCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHH
Confidence            345788888888 455  9999999998    577899999999 889998887764  499999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCc-ceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHV-YIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~-~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |+. |++|+||||+||+++.++. ..++|+|||.+.............+++.|+|||.+..      ..++.++|+||+|
T Consensus       122 H~~-~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~Di~slG  194 (284)
T 3kk8_A          122 HSN-GIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKK------DPYSKPVDIWACG  194 (284)
T ss_dssp             HHT-TEECSCCCGGGEEESSSSTTCCEEECCCTTCEECCSSCBCCCSCSCGGGCCHHHHTT------CCBCTHHHHHHHH
T ss_pred             HHC-CcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEcccCccccCCCCCcCCcCchhhcC------CCCCcccchHHHH
Confidence            996 9999999999999986543 3499999999987765444445679999999999873      3477899999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +..+      .+..|..+|.
T Consensus       195 ~~l~------~l~~g~~pf~  208 (284)
T 3kk8_A          195 VILY------ILLVGYPPFW  208 (284)
T ss_dssp             HHHH------HHHHSSCSSC
T ss_pred             HHHH------HHHHCCCCCC
Confidence            6332      4444655553

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.96  E-value=1.5e-28  Score=189.93  Aligned_cols=160  Identities=12%  Similarity=0.103  Sum_probs=128.6

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ....+|++.++.+.+|+  |++++++++.    .+...++||||++++|.+++.... +++++..+..++.|++.||.||
T Consensus        50 ~~~~~e~~~~~~l~~~~--~i~~~~~~~~----~~~~~~lv~e~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~l  122 (298)
T 1csn_A           50 PQLRDEYRTYKLLAGCT--GIPNVYYFGQ----EGLHNVLVIDLLGPSLEDLLDLCG-RKFSVKTVAMAAKQMLARVQSI  122 (298)
T ss_dssp             CCHHHHHHHHHHTTTCT--TCCCEEEEEE----ETTEEEEEEECCCCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCC--CCCeEEeecC----CCceeEEEEEecCCCHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHH
Confidence            34578999999996666  9999999988    466899999999999999998754 4599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCc---ceeEEeecccccccccccC--------CCCCCCCccchhhHHHHhhhhccCCCC
Q psy320           84 HTKHNLVHTSIKPESIFFKADHV---YIMTLINIQQATTHQECHD--------QQSSSKTKSKIFCEILEQCRLNQDFRL  152 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~---~~~~l~Dfg~a~~~~~~~~--------~~~~~~~~~~~ape~~~~~~~~~~~~~  152 (202)
                      |+. |++||||||+||+++.++.   ..++|+|||.++.......        .....+++.|+|||.+..      ..+
T Consensus       123 H~~-~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~  195 (298)
T 1csn_A          123 HEK-SLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLG------REQ  195 (298)
T ss_dssp             HTT-TEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTT------CCC
T ss_pred             HhC-CEecCCCCHHHEEeccCCCCCCCeEEEEECccccccccccccccccccCccCCCCCcccCCchhhcC------CCC
Confidence            996 9999999999999976542   2399999999987654322        224578999999999873      337


Q ss_pred             CCCcchhhHHHHHHHHHHHHHHHhcCCCCCC
Q psy320          153 DPRVDPTSIKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       153 ~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +.++|+||+|+..+      .+..|..+|..
T Consensus       196 ~~~~Di~slG~il~------el~~g~~pf~~  220 (298)
T 1csn_A          196 SRRDDLEALGHVFM------YFLRGSLPWQG  220 (298)
T ss_dssp             CHHHHHHHHHHHHH------HHHHSSCTTSS
T ss_pred             ChHHHHHHHHHHHH------HHHcCCCCcch
Confidence            78999999986332      44446666644

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.96  E-value=3.2e-29  Score=198.57  Aligned_cols=159  Identities=15%  Similarity=0.155  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCC----------------------
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKF----------------------   61 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~----------------------   61 (202)
                      .+.+|++++.++.+||  ||+++++++..   .+...++||||+ +++|.+++.....                      
T Consensus        71 ~~~~E~~~l~~l~~hp--niv~~~~~~~~---~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (359)
T 3vhe_A           71 ALMSELKILIHIGHHL--NVVNLLGACTK---PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAI  145 (359)
T ss_dssp             HHHHHHHHHHHHCCCT--TBCCEEEEECS---TTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC----------------
T ss_pred             HHHHHHHHHHhhcCCc--ceeeeeeeeec---CCCceEEEEEecCCCcHHHHHHhccccccccccccchhhccccccccc
Confidence            4678999999996555  99999999873   344689999999 8999999976532                      


Q ss_pred             ------------------------------------------CCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCce
Q psy320           62 ------------------------------------------QPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESI   99 (202)
Q Consensus        62 ------------------------------------------~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~ni   99 (202)
                                                                ..+++..++.++.|++.||.|||++ |++||||||+||
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~-~ivH~Dikp~NI  224 (359)
T 3vhe_A          146 PVDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR-KCIHRDLAARNI  224 (359)
T ss_dssp             --------------------------------------CTTTTCBCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGE
T ss_pred             chhhhccccccCccccccccccccccccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHC-CcccCCCChhhE
Confidence                                                      1288999999999999999999996 999999999999


Q ss_pred             eeecCCcceeEEeecccccccccccC---CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHh
Q psy320          100 FFKADHVYIMTLINIQQATTHQECHD---QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRL  176 (202)
Q Consensus       100 l~~~~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~  176 (202)
                      |++.++.  ++|+|||.++.......   .....+++.|+|||.+...      .++.++|+||+|+.      +-.+..
T Consensus       225 ll~~~~~--~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~------~~~~~~Di~slG~i------l~ellt  290 (359)
T 3vhe_A          225 LLSEKNV--VKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDR------VYTIQSDVWSFGVL------LWEIFS  290 (359)
T ss_dssp             EECGGGC--EEECCCGGGSCTTSCTTCEEC--CEECGGGCCHHHHHHC------CCCHHHHHHHHHHH------HHHHTT
T ss_pred             EEcCCCc--EEEEeccceeeecccccchhccccCCCceeEChhhhcCC------CCCchhhhhhHHHH------HHHHHh
Confidence            9988776  99999999987643221   2234678889999999843      37789999999873      224554


Q ss_pred             -cCCCCCC
Q psy320          177 -NHQDFRP  183 (202)
Q Consensus       177 -~~~~~~~  183 (202)
                       |.++|..
T Consensus       291 ~g~~p~~~  298 (359)
T 3vhe_A          291 LGASPYPG  298 (359)
T ss_dssp             TSCCSSTT
T ss_pred             cCCCCCCc
Confidence             7777754

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.96  E-value=7.6e-29  Score=189.22  Aligned_cols=156  Identities=14%  Similarity=0.214  Sum_probs=125.8

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +...+|+++++++ +||  ||+++++++.    +....++||||+ +++|.+++.... +.+++..+..++.|++.||.|
T Consensus        50 ~~~~~E~~~l~~l-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~~i~~~l~~  121 (269)
T 4hcu_A           50 EDFIEEAEVMMKL-SHP--KLVQLYGVCL----EQAPICLVFEFMEHGCLSDYLRTQR-GLFAAETLLGMCLDVCEGMAY  121 (269)
T ss_dssp             HHHHHHHHHHHTC-CCT--TBCCEEEEEC----SSSSEEEEEECCTTCBHHHHHHTTT-TCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CEeeEEEEEe----cCCceEEEEEeCCCCcHHHHHHhcC-cccCHHHHHHHHHHHHHHHHH
Confidence            3467888888888 455  9999999998    566799999999 899999996643 459999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc--CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH--DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~--~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      ||+. |++|+||||+||+++.++.  ++|+|||.+.......  ......+++.|+|||.+....      ++.++|+||
T Consensus       122 lH~~-~i~H~dikp~Nil~~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~------~~~~~Di~s  192 (269)
T 4hcu_A          122 LEEA-CVIHRDLAARNCLVGENQV--IKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSR------YSSKSDVWS  192 (269)
T ss_dssp             HHHT-TCCCSCCCGGGEEECGGGC--EEECCTTGGGGBCCHHHHSTTSTTCCGGGCCHHHHHHCC------CCHHHHHHH
T ss_pred             HHhC-CeecCCcchheEEEcCCCC--EEeccccccccccccccccccCcccccccCCHHHhcCCC------CCchhhhHH
Confidence            9996 9999999999999988776  9999999998764422  222445677899999997443      778999999


Q ss_pred             HHHHHHHHHHHHHHHh-cCCCCC
Q psy320          161 IKMYTTFCEILEQCRL-NHQDFR  182 (202)
Q Consensus       161 l~~~~~~~~~~~~~~~-~~~~~~  182 (202)
                      +|+..+      .+.. |.++|.
T Consensus       193 lG~~l~------~ll~~g~~p~~  209 (269)
T 4hcu_A          193 FGVLMW------EVFSEGKIPYE  209 (269)
T ss_dssp             HHHHHH------HHHTTSCCTTT
T ss_pred             HHHHHH------HHhcCCCCCCC
Confidence            986322      3333 666654

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.96  E-value=3.1e-29  Score=206.95  Aligned_cols=145  Identities=18%  Similarity=0.209  Sum_probs=122.1

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +.+.+|+++++++ +||  ||++++++|.    .....|+||||+ +++|.+++.......+++..+..++.|++.||.|
T Consensus       261 ~~~~~E~~~l~~l-~hp--niv~l~~~~~----~~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~  333 (495)
T 1opk_A          261 EEFLKEAAVMKEI-KHP--NLVQLLGVCT----REPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEY  333 (495)
T ss_dssp             HHHHHHHHHHHHC-CCT--TBCCEEEEEC----SSSSCEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc-CCC--CEeeEEEEEe----cCCcEEEEEEccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHH
Confidence            4567899999999 455  9999999998    566889999999 8999999987665669999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc--CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH--DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~--~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      ||++ ||+||||||+|||++.++.  +||+|||+++......  ......++..|+|||.+....      ++.++|+||
T Consensus       334 LH~~-~ivHrDlkp~NIll~~~~~--~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~------~~~~sDvwS  404 (495)
T 1opk_A          334 LEKK-NFIHRNLAARNCLVGENHL--VKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNK------FSIKSDVWA  404 (495)
T ss_dssp             HHHT-TEECSCCSGGGEEECGGGC--EEECCTTCEECCTTCCEECCTTCCCCGGGCCHHHHHHCE------ECHHHHHHH
T ss_pred             HHhC-CcccCCCChhhEEECCCCc--EEEeecccceeccCCceeecCCCcCCcceeCHhHHhcCC------CCcHHhHHh
Confidence            9996 9999999999999988776  9999999998764322  112334567899999998544      778999999


Q ss_pred             HHHH
Q psy320          161 IKMY  164 (202)
Q Consensus       161 l~~~  164 (202)
                      +|+.
T Consensus       405 lG~~  408 (495)
T 1opk_A          405 FGVL  408 (495)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9863

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.96  E-value=4.9e-29  Score=192.87  Aligned_cols=152  Identities=18%  Similarity=0.214  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|.+++... ...||||+++++++..........|+||||+ +++|.+++..   +.+++..+..++.|++.||.|||
T Consensus        47 ~~~e~~~~~~~-~l~h~niv~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~---~~~~~~~~~~i~~~i~~~l~~lH  122 (301)
T 3q4u_A           47 WFRETELYNTV-MLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQL---TTLDTVSCLRIVLSIASGLAHLH  122 (301)
T ss_dssp             HHHHHHHHHHT-CCCCTTBCCEEEEEEEEETTEEEEEEEECCCTTCBHHHHHTT---CCBCHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHh-hccCcCeeeEEEeeccccCCCceeEEehhhccCCCHHHHHhh---cccCHHHHHHHHHHHHHHHHHHH
Confidence            34566666664 2335699999999886555567899999999 8899999954   34999999999999999999999


Q ss_pred             --------hhCCccccCCCCCceeeecCCcceeEEeecccccccccccC-----CCCCCCCccchhhHHHHhhhhccCCC
Q psy320           85 --------TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD-----QQSSSKTKSKIFCEILEQCRLNQDFR  151 (202)
Q Consensus        85 --------~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~-----~~~~~~~~~~~ape~~~~~~~~~~~~  151 (202)
                              +. |++||||||+|||++.++.  +||+|||.++.......     .....+|+.|+|||.+..........
T Consensus       123 ~~~~~~~~~~-~ivH~Dlkp~Nill~~~~~--~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~  199 (301)
T 3q4u_A          123 IEIFGTQGKP-AIAHRDLKSKNILVKKNGQ--CCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFD  199 (301)
T ss_dssp             SCBCSTTCBC-EEECSCCCGGGEEECTTSC--EEECCCTTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHH
T ss_pred             HhhhhccCCC-CeecCCCChHhEEEcCCCC--EEEeeCCCeeecccccccccccccccccccceeChhhhcCcCCCCccc
Confidence                    85 9999999999999998876  99999999976543222     12347999999999998442111112


Q ss_pred             CCCCcchhhHHHH
Q psy320          152 LDPRVDPTSIKMY  164 (202)
Q Consensus       152 ~~~~~Diwsl~~~  164 (202)
                      ++.++|+||+|+.
T Consensus       200 ~~~~~DvwslG~i  212 (301)
T 3q4u_A          200 SYKRVDIWAFGLV  212 (301)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CCchhhHHHHHHH
Confidence            4468999999873

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.96  E-value=3.3e-29  Score=206.17  Aligned_cols=157  Identities=21%  Similarity=0.303  Sum_probs=126.8

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ....+|+++++++ +||  ||++++++|.    .....|+||||+ +++|.+.+...  +.+++..+..++.|++.||.|
T Consensus        71 ~~~~~E~~~l~~l-~hp--niv~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~i~~qi~~~l~~  141 (484)
T 3nyv_A           71 ESLLREVQLLKQL-DHP--NIMKLYEFFE----DKGYFYLVGEVYTGGELFDEIISR--KRFSEVDAARIIRQVLSGITY  141 (484)
T ss_dssp             HHHHHHHHHHTTC-CCT--TBCCEEEEEE----CSSEEEEEECCCCSCBHHHHHHTC--SCCBHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CCCcEEEEEE----eCCEEEEEEecCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHHHHH
Confidence            3456788888888 455  9999999998    577999999999 99999988765  459999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecC-CcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           83 LHTKHNLVHTSIKPESIFFKAD-HVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~-~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      ||+. |++||||||+|||++.. ....+||+|||.++............+|+.|+|||++..       .++.++|+||+
T Consensus       142 lH~~-~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~-------~~~~~~Diwsl  213 (484)
T 3nyv_A          142 MHKN-KIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKIGTAYYIAPEVLHG-------TYDEKCDVWST  213 (484)
T ss_dssp             HHHT-TCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBCCCCSHHHHTTGGGTCCHHHHHT-------CCCTHHHHHHH
T ss_pred             HHHC-CeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEcccccccccCCCCccccCceeecC-------CCCCcceeHHH
Confidence            9996 99999999999999542 123499999999987654433334579999999999862       37889999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCC
Q psy320          162 KMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      |+..+      .+..|.+||..
T Consensus       214 G~il~------~ll~g~~pf~~  229 (484)
T 3nyv_A          214 GVILY------ILLSGCPPFNG  229 (484)
T ss_dssp             HHHHH------HHHHSSCSSCC
T ss_pred             HHHHH------HHHHCCCCCCC
Confidence            87333      45557777653

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.96  E-value=1.3e-28  Score=196.26  Aligned_cols=158  Identities=19%  Similarity=0.243  Sum_probs=128.3

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecC--CceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGI--NGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~--~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ...+|+++++.+ +||  ||+++++++...+.  .....|+||||++++|.+++...   ++++..+..++.|++.||.|
T Consensus        70 ~~~~E~~~l~~l-~hp--nIv~l~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~~~~~---~l~~~~~~~~~~qi~~~L~~  143 (367)
T 1cm8_A           70 RAYRELRLLKHM-RHE--NVIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKHE---KLGEDRIQFLVYQMLKGLRY  143 (367)
T ss_dssp             HHHHHHHHHHHC-CBT--TBCCCSEEECSCSSTTTCCCCEEEEECCSEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCc--CCCCceeeEecCCccccCceEEEEEecCCCCHHHHHhcC---CCCHHHHHHHHHHHHHHHHH
Confidence            456788888888 455  99999999984321  12467999999999999998763   49999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      ||+. |++||||||+||+++.++.  +||+|||+++....  ......+|+.|+|||.+..     ...++.++|+||+|
T Consensus       144 LH~~-~ivH~Dlkp~NIll~~~~~--~kl~Dfg~a~~~~~--~~~~~~~t~~y~aPE~~~~-----~~~~~~~~DiwslG  213 (367)
T 1cm8_A          144 IHAA-GIIHRDLKPGNLAVNEDCE--LKILDFGLARQADS--EMTGYVVTRWYRAPEVILN-----WMRYTQTVDIWSVG  213 (367)
T ss_dssp             HHHT-TEECCCCCGGGEEECTTCC--EEECCCTTCEECCS--SCCSSCSCGGGCCTHHHHT-----TTCCCTTHHHHHHH
T ss_pred             HHHC-CccccCcCHHHEEEcCCCC--EEEEeeeccccccc--ccCcCcCCCCcCCHHHHhC-----CCCCChhhhHHHHH
Confidence            9996 9999999999999998876  99999999987642  2334578999999999873     23478899999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      +.      +..+..|.++|...
T Consensus       214 ~i------l~ell~g~~pf~~~  229 (367)
T 1cm8_A          214 CI------MAEMITGKTLFKGS  229 (367)
T ss_dssp             HH------HHHHHHSSCSSCCS
T ss_pred             HH------HHHHHhCCCCCCCC
Confidence            73      33566688888643

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.96  E-value=3.6e-29  Score=196.55  Aligned_cols=157  Identities=18%  Similarity=0.203  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      +.+|+++++++ +||  ||+++++++.    .+...|+||||+.++|.+++....  .+++..++.++.|++.||.|||+
T Consensus        80 ~~~E~~~l~~l-~h~--~iv~~~~~~~----~~~~~~lv~e~~~~~L~~~~~~~~--~~~~~~~~~i~~ql~~~l~~LH~  150 (329)
T 3gbz_A           80 AIREVSLLKEL-QHR--NIIELKSVIH----HNHRLHLIFEYAENDLKKYMDKNP--DVSMRVIKSFLYQLINGVNFCHS  150 (329)
T ss_dssp             CHHHHHHGGGC-CCT--TBCCEEEEEE----ETTEEEEEEECCSEEHHHHHHHCT--TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHc-CCC--CcceEEEEEe----cCCEEEEEEecCCCCHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHHHh
Confidence            45678877777 455  9999999998    466899999999889999998764  49999999999999999999999


Q ss_pred             hCCccccCCCCCceeeecCC---cceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           86 KHNLVHTSIKPESIFFKADH---VYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~---~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      + |++||||||+|||++.++   ...+||+|||.++...... ......+++.|+|||.+..     ...++.++|+||+
T Consensus       151 ~-~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~-----~~~~~~~~Diwsl  224 (329)
T 3gbz_A          151 R-RCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFGIPIRQFTHEIITLWYRPPEILLG-----SRHYSTSVDIWSI  224 (329)
T ss_dssp             T-TCCCSCCCGGGEEEEC-----CCEEEECCTTHHHHHC-----------CCTTCCHHHHTT-----CCCCCTHHHHHHH
T ss_pred             C-CEECCCCCHHHEEEecCCCCccceEEECcCCCccccCCcccccCCCcCCccccCHHHhcC-----CCCCCcHHHHHHH
Confidence            6 999999999999996432   2249999999998764332 2224567999999999873     2346789999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCC
Q psy320          162 KMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      |+..      ..+..|.++|..
T Consensus       225 G~il------~ell~g~~pf~~  240 (329)
T 3gbz_A          225 ACIW------AEMLMKTPLFPG  240 (329)
T ss_dssp             HHHH------HHHHHSSCSSCC
T ss_pred             HHHH------HHHHHCCCCcCC
Confidence            8632      244457766643

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.96  E-value=7.1e-29  Score=195.64  Aligned_cols=160  Identities=13%  Similarity=0.105  Sum_probs=128.2

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCC---------------------
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKF---------------------   61 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~---------------------   61 (202)
                      ....+|+++++++.+||  ||+++++++.    .....++||||+ +++|.+++.....                     
T Consensus        93 ~~~~~E~~~l~~l~~hp--~iv~~~~~~~----~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (344)
T 1rjb_A           93 EALMSELKMMTQLGSHE--NIVNLLGACT----LSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDL  166 (344)
T ss_dssp             HHHHHHHHHHHHHCCCT--TBCCEEEEEC----SSSSCEEEEECCTTCBHHHHHHTTTTCC-------------------
T ss_pred             HHHHHHHHHHHhhcCCC--CeeeEEEEEe----eCCccEEEEecCCCCcHHHHHhhccccccccccchhhhccccccccc
Confidence            45678999999995566  9999999998    566899999999 8999999976532                     


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC---CCCCCCccchhh
Q psy320           62 QPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ---QSSSKTKSKIFC  138 (202)
Q Consensus        62 ~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~---~~~~~~~~~~ap  138 (202)
                      +.+++..+..++.|++.||.|||+. |++|+||||+||+++.++.  ++|+|||.+.........   ....+++.|+||
T Consensus       167 ~~l~~~~~~~i~~qi~~aL~~LH~~-~ivH~Dikp~NIll~~~~~--~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aP  243 (344)
T 1rjb_A          167 NVLTFEDLLCFAYQVAKGMEFLEFK-SCVHRDLAARNVLVTHGKV--VKICDFGLARDIMSDSNYVVRGNARLPVKWMAP  243 (344)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHT-TEEETTCSGGGEEEETTTE--EEECCCGGGSCGGGCTTSEEETTEEECGGGCCH
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHhC-CcccCCCChhhEEEcCCCc--EEeCCCccCcccccCccceeccCccCccCccCH
Confidence            2378999999999999999999996 9999999999999998876  999999999876533221   133567789999


Q ss_pred             HHHHhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHh-cCCCCCCC
Q psy320          139 EILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRL-NHQDFRPD  184 (202)
Q Consensus       139 e~~~~~~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~-~~~~~~~~  184 (202)
                      |.+...      .++.++|+||+|+.      +-.+.. |..+|...
T Consensus       244 E~~~~~------~~~~~~Di~slG~i------l~el~t~g~~p~~~~  278 (344)
T 1rjb_A          244 ESLFEG------IYTIKSDVWSYGIL------LWEIFSLGVNPYPGI  278 (344)
T ss_dssp             HHHHHC------CCCHHHHHHHHHHH------HHHHTTTSCCSSTTC
T ss_pred             HHhccC------CCChhHhHHHHHHH------HHHHHcCCCCCcccC
Confidence            999743      37789999999873      224543 77777543

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.96  E-value=1.5e-28  Score=195.13  Aligned_cols=163  Identities=20%  Similarity=0.193  Sum_probs=123.5

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEec-CCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTG-INGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~-~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +...+|+++++++ +||  ||++++++|.... ......|+||||+.++|.+.+.... ..+++..+..++.|++.||.|
T Consensus        74 ~~~~~E~~~l~~l-~h~--~iv~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~  149 (362)
T 3pg1_A           74 KRVLREIRLLNHF-HHP--NILGLRDIFVHFEEPAMHKLYLVTELMRTDLAQVIHDQR-IVISPQHIQYFMYHILLGLHV  149 (362)
T ss_dssp             HHHHHHHHHHHHC-CCT--TBCCCSEEEEECCTTTCCEEEEEEECCSEEHHHHHHCTT-SCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCc--CccceeeeEEeccCCCcceEEEEEccCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHH
Confidence            4567899999988 455  9999999997543 2456899999999889999887543 469999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      ||+. |++|+||||+||+++.++.  ++|+|||.+.............+++.|+|||.+..     ...++.++|+||+|
T Consensus       150 lH~~-~ivH~Dlkp~NIl~~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~-----~~~~~~~~DiwslG  221 (362)
T 3pg1_A          150 LHEA-GVVHRDLHPGNILLADNND--ITICDFNLAREDTADANKTHYVTHRWYRAPELVMQ-----FKGFTKLVDMWSAG  221 (362)
T ss_dssp             HHHT-TCCCCCCCGGGEEECTTCC--EEECCTTC---------------CGGGCCHHHHTT-----CTTCCTHHHHHHHH
T ss_pred             HHHC-cCEecCCChHHEEEcCCCC--EEEEecCcccccccccccceecccceecCcHHhcC-----CCCCCcHhHHHhHH
Confidence            9996 9999999999999988877  99999999987654444445678999999999873     13367899999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      +.      +-.+..|.++|...
T Consensus       222 ~i------l~~l~~g~~pf~~~  237 (362)
T 3pg1_A          222 CV------MAEMFNRKALFRGS  237 (362)
T ss_dssp             HH------HHHHHHSSCSCCCS
T ss_pred             HH------HHHHHhCCCCCCCC
Confidence            73      33556688887643

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.96  E-value=7.9e-29  Score=188.93  Aligned_cols=156  Identities=13%  Similarity=0.189  Sum_probs=126.3

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ....+|++.++++ +||  ||+++++++.    .....++||||+ +++|.+++.... +.+++..+..++.|++.||.|
T Consensus        48 ~~~~~E~~~l~~l-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~  119 (268)
T 3sxs_A           48 DEFFQEAQTMMKL-SHP--KLVKFYGVCS----KEYPIYIVTEYISNGCLLNYLRSHG-KGLEPSQLLEMCYDVCEGMAF  119 (268)
T ss_dssp             HHHHHHHHHHHHC-CCT--TBCCEEEEEC----SSSSEEEEEECCTTCBHHHHHHHHG-GGCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CEeeEEEEEc----cCCceEEEEEccCCCcHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHH
Confidence            3456889999888 455  9999999997    566899999999 899999997754 359999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC--CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD--QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~--~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      ||+. |++|+||||+||+++.++.  ++|+|||.+........  .....+++.|+|||.+....      ++.++|+||
T Consensus       120 lH~~-~i~H~dikp~Nil~~~~~~--~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~------~~~~~Di~s  190 (268)
T 3sxs_A          120 LESH-QFIHRDLAARNCLVDRDLC--VKVSDFGMTRYVLDDQYVSSVGTKFPVKWSAPEVFHYFK------YSSKSDVWA  190 (268)
T ss_dssp             HHHT-TEEESSCSGGGEEECTTCC--EEECCTTCEEECCTTCEEECCSCCCCGGGCCHHHHHHSE------EETTHHHHH
T ss_pred             HHHC-CeecCCcCcceEEECCCCC--EEEccCccceecchhhhhcccCCCcCcccCCHHHHhccC------CchhhhhHH
Confidence            9996 9999999999999988876  99999999987643321  22345667899999998544      678999999


Q ss_pred             HHHHHHHHHHHHHHHh-cCCCCC
Q psy320          161 IKMYTTFCEILEQCRL-NHQDFR  182 (202)
Q Consensus       161 l~~~~~~~~~~~~~~~-~~~~~~  182 (202)
                      +|+..+      .+.. |..+|.
T Consensus       191 lG~il~------~l~~~g~~p~~  207 (268)
T 3sxs_A          191 FGILMW------EVFSLGKMPYD  207 (268)
T ss_dssp             HHHHHH------HHHTTTCCTTT
T ss_pred             HHHHHH------HHHcCCCCCcc
Confidence            986322      4443 666654

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.96  E-value=1.3e-28  Score=191.43  Aligned_cols=159  Identities=16%  Similarity=0.167  Sum_probs=128.1

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCC----------------CCCCH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKF----------------QPAPL   66 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~----------------~~~~~   66 (202)
                      +...+|+++++++.+||  ||+++++++.    .+...++||||+ +++|.+++.....                ..+++
T Consensus        71 ~~~~~E~~~l~~l~~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (313)
T 1t46_A           71 EALMSELKVLSYLGNHM--NIVNLLGACT----IGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDL  144 (313)
T ss_dssp             HHHHHHHHHHHHHCCCT--TBCCEEEEEC----SSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCH
T ss_pred             HHHHHHHHHHhhcccCC--CeeeEEEEEe----cCCCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCH
Confidence            34568999999995566  9999999998    566889999999 8899999987542                14899


Q ss_pred             HHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC---CCCCCCccchhhHHHHh
Q psy320           67 VVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ---QSSSKTKSKIFCEILEQ  143 (202)
Q Consensus        67 ~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~---~~~~~~~~~~ape~~~~  143 (202)
                      ..+..++.|++.||.|||+. |++|+||||+||+++.++.  ++|+|||.+.........   ....+++.|+|||.+..
T Consensus       145 ~~~~~~~~qi~~~l~~lH~~-~i~H~dlkp~Nil~~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  221 (313)
T 1t46_A          145 EDLLSFSYQVAKGMAFLASK-NCIHRDLAARNILLTHGRI--TKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFN  221 (313)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEEETTTE--EEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHC-CeecCCCccceEEEcCCCC--EEEccccccccccccccceeccCCCCcceeeChHHhcC
Confidence            99999999999999999996 9999999999999998776  999999999876543221   13456778999999974


Q ss_pred             hhhccCCCCCCCcchhhHHHHHHHHHHHHHHHh-cCCCCCC
Q psy320          144 CRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRL-NHQDFRP  183 (202)
Q Consensus       144 ~~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~-~~~~~~~  183 (202)
                      .      .++.++|+||+|+.      +-.+.. |.++|..
T Consensus       222 ~------~~~~~~Di~slG~i------l~ellt~g~~p~~~  250 (313)
T 1t46_A          222 C------VYTFESDVWSYGIF------LWELFSLGSSPYPG  250 (313)
T ss_dssp             C------CCCHHHHHHHHHHH------HHHHHTTTCCSSTT
T ss_pred             C------CCChHHHHHHHHHH------HHHHHhCCCCCCCc
Confidence            3      37789999999873      224443 7776654

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.96  E-value=7e-29  Score=194.55  Aligned_cols=157  Identities=11%  Similarity=0.139  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC--------------CCCCCHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK--------------FQPAPLVVA   69 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~--------------~~~~~~~~~   69 (202)
                      ...+|+++++++.+||  ||+++++++.    .....++||||+ +++|.+++....              ...+++..+
T Consensus        71 ~~~~E~~~l~~l~~hp--~iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (327)
T 1fvr_A           71 DFAGELEVLCKLGHHP--NIINLLGACE----HRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQL  144 (327)
T ss_dssp             HHHHHHHHHTTCCCCT--TBCCEEEEEE----ETTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHH
T ss_pred             HHHHHHHHHHhccCCC--chhhhceeee----eCCceEEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHH
Confidence            3566888887775455  9999999998    466899999999 889999997643              235999999


Q ss_pred             HHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccC
Q psy320           70 KIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQD  149 (202)
Q Consensus        70 ~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~  149 (202)
                      +.++.|++.||.|||+. |++|+||||+||+++.++.  ++|+|||.++............+++.|+|||.+....    
T Consensus       145 ~~i~~qi~~aL~~LH~~-~ivH~dlkp~NIl~~~~~~--~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~----  217 (327)
T 1fvr_A          145 LHFAADVARGMDYLSQK-QFIHRDLAARNILVGENYV--AKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSV----  217 (327)
T ss_dssp             HHHHHHHHHHHHHHHHT-TEECSCCSGGGEEECGGGC--EEECCTTCEESSCEECCC----CCTTTCCHHHHHHCE----
T ss_pred             HHHHHHHHHHHHHHHhC-CccCCCCccceEEEcCCCe--EEEcccCcCccccccccccCCCCCccccChhhhcccc----
Confidence            99999999999999996 9999999999999988776  9999999998654333333456778899999997443    


Q ss_pred             CCCCCCcchhhHHHHHHHHHHHHHHHh-cCCCCC
Q psy320          150 FRLDPRVDPTSIKMYTTFCEILEQCRL-NHQDFR  182 (202)
Q Consensus       150 ~~~~~~~Diwsl~~~~~~~~~~~~~~~-~~~~~~  182 (202)
                        ++.++|+||+|+..+      .+.. |..+|.
T Consensus       218 --~~~~~Di~slG~il~------ellt~g~~pf~  243 (327)
T 1fvr_A          218 --YTTNSDVWSYGVLLW------EIVSLGGTPYC  243 (327)
T ss_dssp             --ECHHHHHHHHHHHHH------HHHTTSCCTTT
T ss_pred             --CCchhcchHHHHHHH------HHHcCCCCCCC
Confidence              677999999987322      4443 666664

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.96  E-value=1.7e-28  Score=190.85  Aligned_cols=156  Identities=25%  Similarity=0.269  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++++ +||  ||+++++++.    .....++||||+ +++|.+++...  +.+++..+..++.|++.||.||
T Consensus        48 ~~~~E~~~l~~l-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~i~~~l~~~l~~l  118 (311)
T 4agu_A           48 IALREIRMLKQL-KHP--NLVNLLEVFR----RKRRLHLVFEYCDHTVLHELDRYQ--RGVPEHLVKSITWQTLQAVNFC  118 (311)
T ss_dssp             HHHHHHHHHHHC-CCT--TBCCEEEEEE----ETTEEEEEEECCSEEHHHHHHHTS--SCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCC--Cccchhheee----cCCeEEEEEEeCCCchHHHHHhhh--cCCCHHHHHHHHHHHHHHHHHH
Confidence            345788888888 455  9999999998    466899999999 78888877654  4599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC-CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD-QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~-~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |+. |++|+||||+||+++.++.  ++|+|||.+........ .....+++.|+|||.+..     ...++.++|+||+|
T Consensus       119 H~~-~ivH~dlkp~Nil~~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-----~~~~~~~~Di~slG  190 (311)
T 4agu_A          119 HKH-NCIHRDVKPENILITKHSV--IKLCDFGFARLLTGPSDYYDDEVATRWYRSPELLVG-----DTQYGPPVDVWAIG  190 (311)
T ss_dssp             HHT-TEECCCCSGGGEEECTTSC--EEECCCTTCEECC------------GGGCCHHHHHT-----CSCCCTHHHHHHHH
T ss_pred             HHC-CCcCCCCChhhEEEcCCCC--EEEeeCCCchhccCcccccCCCcCCccccChHHHhc-----CCCCCcchhhHHHH
Confidence            996 9999999999999998876  99999999987653322 234578999999999973     23467899999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +..+      .+..|.++|..
T Consensus       191 ~il~------~l~~g~~p~~~  205 (311)
T 4agu_A          191 CVFA------ELLSGVPLWPG  205 (311)
T ss_dssp             HHHH------HHHHSSCSCCC
T ss_pred             HHHH------HHHhCCCCCCC
Confidence            7332      55557777654

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.96  E-value=1e-28  Score=189.59  Aligned_cols=144  Identities=17%  Similarity=0.252  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK--FQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~--~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ..+|+..+..+.+||  ||+++++++.    .....++||||+ +++|.+++....  .+.+++..++.++.|++.||.|
T Consensus        57 ~~~e~~~~~~l~~h~--~iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~  130 (289)
T 1x8b_A           57 ALREVYAHAVLGQHS--HVVRYFSAWA----EDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRY  130 (289)
T ss_dssp             HHHHHHHHHHSCSCT--TBCCEEEEEE----ETTEEEEEEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCC--Ceeeeeeeee----cCCeEEEEEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHH
Confidence            445666666664455  9999999998    466999999999 889999997653  2459999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCC-----------------cceeEEeecccccccccccCCCCCCCCccchhhHHHHhhh
Q psy320           83 LHTKHNLVHTSIKPESIFFKADH-----------------VYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCR  145 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~-----------------~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~  145 (202)
                      ||+. |++|+||||+||+++.++                 ...++|+|||.+.....   .....+++.|+|||.+... 
T Consensus       131 lH~~-~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~---~~~~~gt~~y~aPE~~~~~-  205 (289)
T 1x8b_A          131 IHSM-SLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTRISS---PQVEEGDSRFLANEVLQEN-  205 (289)
T ss_dssp             HHHT-TEECSCCSGGGEEEC--------------------CCCEEECCCTTCEETTC---SCCCCCCGGGCCHHHHTTC-
T ss_pred             HHhC-CEeecCCCHHHEEEcCCCCCcccccccccccccCCceEEEEcccccccccCC---ccccCCCccccChhHhcCC-
Confidence            9996 999999999999998543                 12489999999987643   2334689999999998732 


Q ss_pred             hccCCCCCCCcchhhHHHH
Q psy320          146 LNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus       146 ~~~~~~~~~~~Diwsl~~~  164 (202)
                          ..+++++|+||+|+.
T Consensus       206 ----~~~~~~~Di~slG~i  220 (289)
T 1x8b_A          206 ----YTHLPKADIFALALT  220 (289)
T ss_dssp             ----CTTHHHHHHHHHHHH
T ss_pred             ----CCCCchhhHHHHHHH
Confidence                234568999999864

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.96  E-value=1.1e-28  Score=193.58  Aligned_cols=156  Identities=15%  Similarity=0.164  Sum_probs=124.1

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ..+.+|+++++++ +||  ||++++++|.    .+ ..++|++++ +++|.+++.... +.+++..++.++.|++.||.|
T Consensus        62 ~~~~~E~~~l~~l-~h~--~iv~~~~~~~----~~-~~~~v~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~  132 (327)
T 3poz_A           62 KEILDEAYVMASV-DNP--HVCRLLGICL----TS-TVQLITQLMPFGCLLDYVREHK-DNIGSQYLLNWCVQIAKGMNY  132 (327)
T ss_dssp             HHHHHHHHHHHHC-CBT--TBCCEEEEEE----SS-SEEEEEECCTTCBHHHHHHHST-TSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CEeEEEEEEe----cC-CeEEEEEecCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHH
Confidence            3456788888888 455  9999999998    33 367889999 999999997754 459999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC---CCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ---SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~---~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      ||+. |++||||||+|||++.++.  +||+|||+++.........   ...++..|+|||.+...      .++.++|+|
T Consensus       133 LH~~-~ivH~Dikp~NIll~~~~~--~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~------~~~~~~Di~  203 (327)
T 3poz_A          133 LEDR-RLVHRDLAARNVLVKTPQH--VKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHR------IYTHQSDVW  203 (327)
T ss_dssp             HHHT-TCCCSCCCGGGEEEEETTE--EEECCTTHHHHHTTTCC-------CCCGGGSCHHHHHHC------CCCHHHHHH
T ss_pred             HhhC-CeeCCCCChheEEECCCCC--EEEccCcceeEccCCcccccccCCCccccccChHHhccC------CCCchhhhh
Confidence            9996 9999999999999998877  9999999998764332221   33567789999999843      378899999


Q ss_pred             hHHHHHHHHHHHHHHHh-cCCCCCC
Q psy320          160 SIKMYTTFCEILEQCRL-NHQDFRP  183 (202)
Q Consensus       160 sl~~~~~~~~~~~~~~~-~~~~~~~  183 (202)
                      |+|+..+      .+.. |..+|..
T Consensus       204 slG~il~------ellt~g~~p~~~  222 (327)
T 3poz_A          204 SYGVTVW------ELMTFGSKPYDG  222 (327)
T ss_dssp             HHHHHHH------HHHTTSCCTTTT
T ss_pred             hhHHHHH------HHHhcCCCCccC
Confidence            9987322      4444 7777653

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.96  E-value=5e-29  Score=195.33  Aligned_cols=154  Identities=16%  Similarity=0.193  Sum_probs=121.1

Q ss_pred             HHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhC
Q psy320            8 NLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKH   87 (202)
Q Consensus         8 ~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~   87 (202)
                      +|+++++.+ +|  |||+++++++.    .....|+||||++++|.+++.... +.+++..++.++.|++.||.|||+. 
T Consensus        49 ~E~~~l~~l-~h--~~iv~~~~~~~----~~~~~~lv~e~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~aL~~LH~~-  119 (324)
T 3mtl_A           49 REVSLLKDL-KH--ANIVTLHDIIH----TEKSLTLVFEYLDKDLKQYLDDCG-NIINMHNVKLFLFQLLRGLAYCHRQ-  119 (324)
T ss_dssp             CCHHHHSCC-CC--TTBCCEEEEEE----CSSCEEEEEECCSEEHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHhc-CC--CCCCeeeeEEe----eCCEEEEEecccccCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHHC-
Confidence            577777777 44  59999999998    567899999999889999987754 4699999999999999999999996 


Q ss_pred             CccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHHH
Q psy320           88 NLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTT  166 (202)
Q Consensus        88 ~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~~  166 (202)
                      |++||||||+||+++.++.  ++|+|||.+....... ......+++.|+|||.+..     ...++.++|+||+|+.  
T Consensus       120 ~ivH~Dikp~NIl~~~~~~--~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~-----~~~~~~~~DiwslG~i--  190 (324)
T 3mtl_A          120 KVLHRDLKPQNLLINERGE--LKLADFGLARAKSIPTKTYDNEVVTLWYRPPDILLG-----STDYSTQIDMWGVGCI--  190 (324)
T ss_dssp             TEEESSCCGGGEEECTTCC--EEECSSSEEECC------------CGGGCCHHHHTT-----CCCCCTHHHHHHHHHH--
T ss_pred             CccCCCcCHHHEEECCCCC--EEEccCcccccccCCccccccccCcccccChhhhcC-----CCCCCcHHHHHHHHHH--
Confidence            9999999999999998877  9999999998764322 2224578999999999873     2346789999999873  


Q ss_pred             HHHHHHHHHhcCCCCCC
Q psy320          167 FCEILEQCRLNHQDFRP  183 (202)
Q Consensus       167 ~~~~~~~~~~~~~~~~~  183 (202)
                          +-.+..|.++|..
T Consensus       191 ----l~~l~~g~~pf~~  203 (324)
T 3mtl_A          191 ----FYEMATGRPLFPG  203 (324)
T ss_dssp             ----HHHHHHSSCSCCC
T ss_pred             ----HHHHHhCCCCCCC
Confidence                3355558777754

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.96  E-value=2.4e-28  Score=187.53  Aligned_cols=158  Identities=24%  Similarity=0.297  Sum_probs=125.5

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ....+|+++++++ +||  ||+++++++.    .+...++||||+ +++|.+++....  .+++..+..++.|++.||.|
T Consensus        53 ~~~~~E~~~l~~l-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~i~~~l~~  123 (283)
T 3bhy_A           53 EEIEREVNILREI-RHP--NIITLHDIFE----NKTDVVLILELVSGGELFDFLAEKE--SLTEDEATQFLKQILDGVHY  123 (283)
T ss_dssp             HHHHHHHHHHHHC-CCT--TBCCEEEEEE----CSSEEEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--Ceeehhheec----CCCeEEEEEeecCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHH
Confidence            4467889999988 455  9999999998    567899999999 899999997753  49999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCC--cceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           83 LHTKHNLVHTSIKPESIFFKADH--VYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~--~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      ||+. |++|+||||+||+++.++  ...++|+|||.+.............+++.|+|||.+..      ..++.++|+||
T Consensus       124 lH~~-~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~Di~s  196 (283)
T 3bhy_A          124 LHSK-RIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNEFKNIFGTPEFVAPEIVNY------EPLGLEADMWS  196 (283)
T ss_dssp             HHHT-TEECSCCSGGGEEESCSSSSSCCEEECCCTTCEECC--------CCCGGGCCHHHHTT------CCCCTHHHHHH
T ss_pred             HHhC-CccCCCCChHHEEEecCCCCCCceEEEecccceeccCCCcccccCCCcCccCcceecC------CCCCcchhhhh
Confidence            9996 999999999999998765  12499999999987654433345578999999999873      33778999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCC
Q psy320          161 IKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       161 l~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +|+..+      .+..|..+|..
T Consensus       197 lG~il~------~l~~g~~p~~~  213 (283)
T 3bhy_A          197 IGVITY------ILLSGASPFLG  213 (283)
T ss_dssp             HHHHHH------HHHHSSCTTCC
T ss_pred             HHHHHH------HHHHCCCCCCC
Confidence            986322      44557666653

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.96  E-value=1.6e-28  Score=200.55  Aligned_cols=157  Identities=14%  Similarity=0.148  Sum_probs=125.5

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +.+.+|+++++++ +||  ||+++++++..   .....|+||||+ +++|.+++.......+++..+..++.|++.||.|
T Consensus       231 ~~~~~E~~~l~~l-~h~--niv~~~~~~~~---~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~  304 (450)
T 1k9a_A          231 QAFLAEASVMTQL-RHS--NLVQLLGVIVE---EKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEY  304 (450)
T ss_dssp             HHHHHHHHHHHTC-CCT--TBCCEEEEEEC---TTSCEEEEEECCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc-cCC--CEEEEEEEEEc---CCCceEEEEEecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence            4567899999888 455  99999999873   334789999999 8999999988765558999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      ||++ |++||||||+|||++.++.  +||+|||+++.....  .....++..|+|||.+..      ..++.++|+||+|
T Consensus       305 LH~~-~ivHrDlkp~Nill~~~~~--~kl~DfG~a~~~~~~--~~~~~~~~~y~aPE~~~~------~~~~~~sDvwslG  373 (450)
T 1k9a_A          305 LEGN-NFVHRDLAARNVLVSEDNV--AKVSDFGLTKEASST--QDTGKLPVKWTAPEALRE------KKFSTKSDVWSFG  373 (450)
T ss_dssp             HHHT-TEECSCCCGGGEEECTTSC--EEECCCTTCEECC--------CCCTTTSCHHHHHS------SCCCHHHHHHHHH
T ss_pred             HHhC-CeeCCCCCHhhEEECCCCC--EEEeeCCCccccccc--ccCCCCCcceeCHHHhcC------CCCCcHHHHHHHH
Confidence            9996 9999999999999998876  999999999865322  222356788999999983      3478899999998


Q ss_pred             HHHHHHHHHHHHHh-cCCCCCC
Q psy320          163 MYTTFCEILEQCRL-NHQDFRP  183 (202)
Q Consensus       163 ~~~~~~~~~~~~~~-~~~~~~~  183 (202)
                      +..+      .+.. |..+|..
T Consensus       374 ~~l~------el~t~g~~P~~~  389 (450)
T 1k9a_A          374 ILLW------EIYSFGRVPYPR  389 (450)
T ss_dssp             HHHH------HHHTTTCCSSTT
T ss_pred             HHHH------HHHhCCCCCCCC
Confidence            6322      3333 7776653

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.96  E-value=4.9e-29  Score=200.46  Aligned_cols=170  Identities=20%  Similarity=0.257  Sum_probs=130.2

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK-FQPAPLVVAKIIVNQILEGLN   81 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~-~~~~~~~~~~~~~~qi~~~l~   81 (202)
                      ....+|+++++++ +||  ||+++++++...  .....|+||||+ +++|.+++.... ...+++..++.++.|++.||.
T Consensus        52 ~~~~~E~~~l~~l-~hp--nIv~~~~~~~~~--~~~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~  126 (396)
T 4eut_A           52 DVQMREFEVLKKL-NHK--NIVKLFAIEEET--TTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMN  126 (396)
T ss_dssp             HHHHHHHHHHHHC-CCT--TBCCEEEEEECT--TTCCEEEEECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc-CCC--CCCeEEEeeccC--CCCeeEEEEecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHH
Confidence            3456789999888 455  999999998842  244789999999 899999987643 233999999999999999999


Q ss_pred             HHHhhCCccccCCCCCceeeec--CCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhcc--CCCCCCCcc
Q psy320           82 HLHTKHNLVHTSIKPESIFFKA--DHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQ--DFRLDPRVD  157 (202)
Q Consensus        82 ~lh~~~~ivH~dl~p~nil~~~--~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~--~~~~~~~~D  157 (202)
                      |||+. |++||||||+|||+..  ++...+||+|||.++............+++.|+|||.+.......  ...++.++|
T Consensus       127 ~LH~~-~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~D  205 (396)
T 4eut_A          127 HLREN-GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVD  205 (396)
T ss_dssp             HHHHT-TEECCCCCGGGEEEEECTTSCEEEEECCGGGCEECCCGGGSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHH
T ss_pred             HHHHC-CEEECCcCHHHEEEeecCCCceeEEEecCCCceEccCCCccccccCCccccCHHHhhccccccccccCCCcHHH
Confidence            99996 9999999999999832  223349999999998876554445667999999999987532110  022566899


Q ss_pred             hhhHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy320          158 PTSIKMYTTFCEILEQCRLNHQDFRPDP  185 (202)
Q Consensus       158 iwsl~~~~~~~~~~~~~~~~~~~~~~~~  185 (202)
                      +||+|+.      +..+..|..+|.+..
T Consensus       206 iwSlG~i------l~el~tg~~Pf~~~~  227 (396)
T 4eut_A          206 LWSIGVT------FYHAATGSLPFRPFE  227 (396)
T ss_dssp             HHHHHHH------HHHHHHSSCSEECTT
T ss_pred             HHHHHHH------HHHHHHCCCCCCCCC
Confidence            9999873      335555888876543

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.96  E-value=2.8e-28  Score=187.96  Aligned_cols=157  Identities=22%  Similarity=0.297  Sum_probs=126.4

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++.+ +|  |||++++++|......+...++||||+ +++|.+++....  .+++..+..++.|++.||.||
T Consensus        71 ~~~~e~~~l~~l-~h--~~iv~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~l  145 (290)
T 1t4h_A           71 RFKEEAEMLKGL-QH--PNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRFK--VMKIKVLRSWCRQILKGLQFL  145 (290)
T ss_dssp             HHHHHHHHHTTC-CC--TTBCCEEEEEEEESSSCEEEEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CC--CCeeeeeeeeccccCCCceEEEEEEecCCCCHHHHHHHcc--CCCHHHHHHHHHHHHHHHHHH
Confidence            345677777777 44  599999999987665678899999999 889999998763  499999999999999999999


Q ss_pred             HhhCC--ccccCCCCCceeee-cCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           84 HTKHN--LVHTSIKPESIFFK-ADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        84 h~~~~--ivH~dl~p~nil~~-~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      |+. |  ++|+||||+||+++ .++.  ++|+|||.+...... ......+++.|+|||.+.       ..++.++|+||
T Consensus       146 H~~-~~~i~H~dikp~Nil~~~~~~~--~kl~Dfg~~~~~~~~-~~~~~~~t~~y~aPE~~~-------~~~~~~~Di~s  214 (290)
T 1t4h_A          146 HTR-TPPIIHRDLKCDNIFITGPTGS--VKIGDLGLATLKRAS-FAKAVIGTPEFMAPEMYE-------EKYDESVDVYA  214 (290)
T ss_dssp             HTS-SSCCCCSCCCGGGEEESSTTSC--EEECCTTGGGGCCTT-SBEESCSSCCCCCGGGGG-------TCCCTHHHHHH
T ss_pred             HcC-CCCEEECCCCHHHEEEECCCCC--EEEeeCCCccccccc-ccccccCCcCcCCHHHHh-------ccCCCcchHHH
Confidence            996 8  99999999999997 4555  999999999764322 222456899999999876       23678999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCC
Q psy320          161 IKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       161 l~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +|+..+      .+..|..+|..
T Consensus       215 lG~~l~------~l~~g~~pf~~  231 (290)
T 1t4h_A          215 FGMCML------EMATSEYPYSE  231 (290)
T ss_dssp             HHHHHH------HHHHSSCTTTT
T ss_pred             HHHHHH------HHHhCCCCCCC
Confidence            987333      55557777754

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.96  E-value=6e-29  Score=200.44  Aligned_cols=165  Identities=19%  Similarity=0.179  Sum_probs=122.8

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcC-------CCCCCHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQK-------FQPAPLVVAKIIVNQI   76 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~-------~~~~~~~~~~~~~~qi   76 (202)
                      ..+.+|+++++++ +||  ||++++++|...  .....|+||||++++|.+++....       ...+++..++.++.|+
T Consensus        63 ~~~~~E~~~l~~l-~hp--niv~~~~~~~~~--~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi  137 (405)
T 3rgf_A           63 MSACREIALLREL-KHP--NVISLQKVFLSH--ADRKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQI  137 (405)
T ss_dssp             HHHHHHHHHHHHC-CCT--TBCCCCEEEEET--TTTEEEEEEECCSEEHHHHHHHHHHHC-------CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc-CCC--CeeeEeeEEecC--CCCeEEEEEeCCCCCHHHHHHHhccccccccccCCCHHHHHHHHHHH
Confidence            3567899999999 455  999999999642  356899999999889988886432       1249999999999999


Q ss_pred             HHHHHHHHhhCCccccCCCCCceeeecC--CcceeEEeeccccccccccc----CCCCCCCCccchhhHHHHhhhhccCC
Q psy320           77 LEGLNHLHTKHNLVHTSIKPESIFFKAD--HVYIMTLINIQQATTHQECH----DQQSSSKTKSKIFCEILEQCRLNQDF  150 (202)
Q Consensus        77 ~~~l~~lh~~~~ivH~dl~p~nil~~~~--~~~~~~l~Dfg~a~~~~~~~----~~~~~~~~~~~~ape~~~~~~~~~~~  150 (202)
                      +.||.|||+. ||+||||||+|||+..+  ....+||+|||+|+......    ......+|+.|+|||++...     .
T Consensus       138 ~~al~~LH~~-~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----~  211 (405)
T 3rgf_A          138 LDGIHYLHAN-WVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGA-----R  211 (405)
T ss_dssp             HHHHHHHHHT-TCCCCCCCGGGEEECCSSTTTTCEEECCTTCCC----------------CCCTTCCHHHHTTC-----C
T ss_pred             HHHHHHHHhC-CEeCCCcCHHHeEEecCCCCCCcEEEEECCCceecCCCCcccccCCCceecCcccCchhhcCC-----C
Confidence            9999999996 99999999999999432  12349999999998765322    12245789999999998732     3


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCCCC
Q psy320          151 RLDPRVDPTSIKMYTTFCEILEQCRLNHQDFRPDP  185 (202)
Q Consensus       151 ~~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~~~~  185 (202)
                      .++.++|+||+|+.      +..++.|.++|....
T Consensus       212 ~~~~~~DiwSlG~i------l~ell~g~~pf~~~~  240 (405)
T 3rgf_A          212 HYTKAIDIWAIGCI------FAELLTSEPIFHCRQ  240 (405)
T ss_dssp             SCCHHHHHHHHHHH------HHHHHHSSCTTCCCC
T ss_pred             cccchhhhHHHHHH------HHHHHhCCCCCCCcc
Confidence            36779999999973      335666888886543

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.96  E-value=2.8e-28  Score=195.09  Aligned_cols=161  Identities=18%  Similarity=0.234  Sum_probs=130.4

Q ss_pred             HHHHHHHHHHHHhcCC---CccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHP---SDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLN   81 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~---h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~   81 (202)
                      ...+|+++++.++.++   |++|+++.++|.    .....|+||||++++|.+++.....+++++..++.++.|++.||.
T Consensus        96 ~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~----~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~  171 (382)
T 2vx3_A           96 QAQIEVRLLELMNKHDTEMKYYIVHLKRHFM----FRNHLCLVFEMLSYNLYDLLRNTNFRGVSLNLTRKFAQQMCTALL  171 (382)
T ss_dssp             HHHHHHHHHHHHHHCSSGGGGGBCCEEEEEE----ETTEEEEEEECCCCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccccceeEEEeeeeec----cCCceEEEEecCCCCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHH
Confidence            3456888888886665   346999999998    466999999999889999998876566999999999999999999


Q ss_pred             HHHh-hCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           82 HLHT-KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        82 ~lh~-~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      |||. +.||+||||||+|||++.+....+||+|||.++....  ......+++.|+|||++...      .++.++|+||
T Consensus       172 ~lH~~~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~a~~~~~--~~~~~~~t~~y~aPE~~~~~------~~~~~~DiwS  243 (382)
T 2vx3_A          172 FLATPELSIIHCDLKPENILLCNPKRSAIKIVDFGSSCQLGQ--RIYQYIQSRFYRSPEVLLGM------PYDLAIDMWS  243 (382)
T ss_dssp             HHTSTTTCEECCCCSGGGEEESSTTSCCEEECCCTTCEETTC--CCCSSCSCGGGCCHHHHTTC------CCCTHHHHHH
T ss_pred             HhccCCCCEEcCCCCcccEEEecCCCCcEEEEeccCceeccc--ccccccCCccccChHHHcCC------CCCcHHHHHH
Confidence            9994 2499999999999999764444599999999987642  22346789999999999843      4788999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCC
Q psy320          161 IKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       161 l~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +|+..      -.+..|.++|..
T Consensus       244 lG~il------~elltg~~pf~~  260 (382)
T 2vx3_A          244 LGCIL------VEMHTGEPLFSG  260 (382)
T ss_dssp             HHHHH------HHHHHSSCSSCC
T ss_pred             HHHHH------HHHHhCCCCCCC
Confidence            98733      255558777764

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.96  E-value=8.8e-29  Score=195.57  Aligned_cols=156  Identities=21%  Similarity=0.210  Sum_probs=125.8

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ...+|+++++.+ +||  ||++++++|.    .....++||||+.++|.+++.... ..+++..+..++.|++.||.|||
T Consensus        58 ~~~~E~~~l~~l-~h~--~iv~~~~~~~----~~~~~~lv~e~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH  129 (346)
T 1ua2_A           58 TALREIKLLQEL-SHP--NIIGLLDAFG----HKSNISLVFDFMETDLEVIIKDNS-LVLTPSHIKAYMLMTLQGLEYLH  129 (346)
T ss_dssp             HHHHHHHHHHHC-CCT--TBCCEEEEEC----CTTCCEEEEECCSEEHHHHHTTCC-SSCCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhC-CCC--CCCeEEEEEe----eCCceEEEEEcCCCCHHHHHHhcC-cCCCHHHHHHHHHHHHHHHHHHH
Confidence            456789999888 455  9999999998    566899999999779999886643 45899999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      +. |++||||||+||+++.++.  +||+|||.++...... ......+++.|+|||.+..     ...++.++|+||+|+
T Consensus       130 ~~-~ivH~Dlkp~Nil~~~~~~--~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~-----~~~~~~~~DiwslG~  201 (346)
T 1ua2_A          130 QH-WILHRDLKPNNLLLDENGV--LKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFG-----ARMYGVGVDMWAVGC  201 (346)
T ss_dssp             HT-TCCCCCCCGGGEEECTTCC--EEECCCGGGSTTTSCCCCCCCSCCCCTTCCHHHHTT-----CSCCCHHHHHHHHHH
T ss_pred             HC-CEECCCCCHHHEEEcCCCC--EEEEecccceeccCCcccCCcccccccccCchHhhC-----CCCCCchhhhHhHHH
Confidence            96 9999999999999998876  9999999998765432 2234678999999999862     233677999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~  182 (202)
                      ..+      .+..|.++|.
T Consensus       202 il~------ell~g~~~~~  214 (346)
T 1ua2_A          202 ILA------ELLLRVPFLP  214 (346)
T ss_dssp             HHH------HHHHSSCSSC
T ss_pred             HHH------HHHHCCCCCC
Confidence            322      3334655554

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.96  E-value=1.1e-28  Score=189.95  Aligned_cols=158  Identities=16%  Similarity=0.173  Sum_probs=128.6

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +...+|+++++++ +||  ||+++++++.    .....++||||+ +++|.+++.......+++..+..++.|++.||.|
T Consensus        54 ~~~~~E~~~l~~l-~h~--~i~~~~~~~~----~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~  126 (288)
T 3kfa_A           54 EEFLKEAAVMKEI-KHP--NLVQLLGVCT----REPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEY  126 (288)
T ss_dssp             HHHHHHHHHHHHC-CCT--TBCCEEEEEC----SSSSEEEEEECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CEeeEEEEEc----cCCCEEEEEEcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHH
Confidence            3456789989888 455  9999999998    566899999999 8999999988666679999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC--CCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ--QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~--~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      ||+. |++|+||||+||+++.++.  ++|+|||.+.........  ....+++.|+|||.+....      ++.++|+||
T Consensus       127 lH~~-~i~H~dikp~Nil~~~~~~--~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~------~~~~~Di~s  197 (288)
T 3kfa_A          127 LEKK-NFIHRDLAARNCLVGENHL--VKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNK------FSIKSDVWA  197 (288)
T ss_dssp             HHHH-TCCCSCCSGGGEEECGGGC--EEECCCCGGGTSCSSSSEEETTEEECGGGCCHHHHHHCC------CCHHHHHHH
T ss_pred             HHHC-CccCCCCCcceEEEcCCCC--EEEccCccceeccCCccccccCCccccCcCChhhhccCC------CCchhhHHH
Confidence            9997 9999999999999988776  999999999876533211  1335677899999997443      778999999


Q ss_pred             HHHHHHHHHHHHHHHh-cCCCCCC
Q psy320          161 IKMYTTFCEILEQCRL-NHQDFRP  183 (202)
Q Consensus       161 l~~~~~~~~~~~~~~~-~~~~~~~  183 (202)
                      +|+..+      .+.. |.++|..
T Consensus       198 lG~il~------~ll~~g~~p~~~  215 (288)
T 3kfa_A          198 FGVLLW------EIATYGMSPYPG  215 (288)
T ss_dssp             HHHHHH------HHHTTSCCSSTT
T ss_pred             HHHHHH------HHHhCCCCCCCC
Confidence            987332      4444 6666653

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.96  E-value=2.2e-28  Score=187.63  Aligned_cols=154  Identities=14%  Similarity=0.208  Sum_probs=122.1

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++++ +  ||||++++++|.    .....++||||+ +++|.+++....  ++++..+..++.|++.||.||
T Consensus        55 ~~~~e~~~l~~l-~--h~~i~~~~~~~~----~~~~~~lv~e~~~~~~l~~~l~~~~--~~~~~~~~~~~~qi~~~l~~L  125 (279)
T 3fdn_A           55 QLRREVEIQSHL-R--HPNILRLYGYFH----DATRVYLILEYAPLGTVYRELQKLS--KFDEQRTATYITELANALSYC  125 (279)
T ss_dssp             HHHHHHHHHTTC-C--CTTBCCEEEEEE----CSSEEEEEECCCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC-C--CCCCcchhheEe----cCCEEEEEEecCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHH
Confidence            345677777767 3  459999999998    567899999999 899999998764  499999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |+. |++|+||||+||+++.++.  ++|+|||.+...... ......+++.|+|||.+..      ..++.++|+||+|+
T Consensus       126 H~~-~i~H~dlkp~Nili~~~~~--~~l~Dfg~~~~~~~~-~~~~~~~~~~y~aPE~~~~------~~~~~~~Di~slG~  195 (279)
T 3fdn_A          126 HSK-RVIHRDIKPENLLLGSAGE--LKIADFGWSVHAPSS-RRTDLCGTLDYLPPEMIEG------RMHDEKVDLWSLGV  195 (279)
T ss_dssp             HTT-TCEECCCCGGGEEECTTSC--EEECSCCEESCC---------CCCCTTCCHHHHTT------CCCCTTHHHHHHHH
T ss_pred             HhC-CEecccCChHhEEEcCCCC--EEEEeccccccCCcc-cccccCCCCCccCHhHhcc------CCCCccchhHhHHH
Confidence            996 9999999999999998877  999999998665422 2234578999999999873      33677999999987


Q ss_pred             HHHHHHHHHHHHhcCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~  183 (202)
                      ..+      .+..|..+|..
T Consensus       196 il~------~l~~g~~p~~~  209 (279)
T 3fdn_A          196 LCY------EFLVGKPPFEA  209 (279)
T ss_dssp             HHH------HHHHSSCTTCC
T ss_pred             HHH------HHHHCCCCCCC
Confidence            333      44557666653

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.96  E-value=6.8e-29  Score=197.78  Aligned_cols=146  Identities=9%  Similarity=0.059  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCC-----CCCCHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKF-----QPAPLVVAKIIVNQILE   78 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~-----~~~~~~~~~~~~~qi~~   78 (202)
                      .+.+|+.+++++ +||  ||+++++++.    .....++||||+ +++|.+++.....     ..+++..++.++.|++.
T Consensus       120 ~~~~E~~~l~~l-~hp--nIv~~~~~~~----~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~  192 (367)
T 3l9p_A          120 DFLMEALIISKF-NHQ--NIVRCIGVSL----QSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIAC  192 (367)
T ss_dssp             HHHHHHHHHHHC-CCT--TBCCEEEEEC----SSSSCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCC--CCCeEEEEEe----cCCCCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHH
Confidence            345688888888 555  9999999998    566789999999 9999999987542     35899999999999999


Q ss_pred             HHHHHHhhCCccccCCCCCceeeecCCc-ceeEEeecccccccccccCC---CCCCCCccchhhHHHHhhhhccCCCCCC
Q psy320           79 GLNHLHTKHNLVHTSIKPESIFFKADHV-YIMTLINIQQATTHQECHDQ---QSSSKTKSKIFCEILEQCRLNQDFRLDP  154 (202)
Q Consensus        79 ~l~~lh~~~~ivH~dl~p~nil~~~~~~-~~~~l~Dfg~a~~~~~~~~~---~~~~~~~~~~ape~~~~~~~~~~~~~~~  154 (202)
                      ||.|||++ ||+||||||+|||++.++. ..+||+|||.++........   ....+++.|+|||.+...      .++.
T Consensus       193 aL~~LH~~-~ivHrDlkp~NIll~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~------~~~~  265 (367)
T 3l9p_A          193 GCQYLEEN-HFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEG------IFTS  265 (367)
T ss_dssp             HHHHHHHT-TCCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHC------CCCH
T ss_pred             HHHHHHhC-CeeCCCCChhhEEEecCCCCceEEECCCccccccccccccccCCCcCCcccEECHHHhcCC------CCCc
Confidence            99999996 9999999999999985542 24999999999865433222   134578899999999743      3788


Q ss_pred             CcchhhHHHH
Q psy320          155 RVDPTSIKMY  164 (202)
Q Consensus       155 ~~Diwsl~~~  164 (202)
                      ++|+||+|+.
T Consensus       266 ~~DvwslG~i  275 (367)
T 3l9p_A          266 KTDTWSFGVL  275 (367)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999863

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.96  E-value=3.5e-28  Score=190.54  Aligned_cols=158  Identities=16%  Similarity=0.161  Sum_probs=129.3

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ....+|+++++.++.||  ||+++++++...  .....++||||+ +++|.+++..     +++..+..++.|++.||.|
T Consensus        75 ~~~~~E~~~l~~l~~~~--~i~~~~~~~~~~--~~~~~~lv~e~~~~~~l~~~~~~-----~~~~~~~~~~~qi~~~l~~  145 (330)
T 3nsz_A           75 KKIKREIKILENLRGGP--NIITLADIVKDP--VSRTPALVFEHVNNTDFKQLYQT-----LTDYDIRFYMYEILKALDY  145 (330)
T ss_dssp             HHHHHHHHHHHHHTTST--TBCCEEEEEECT--TTCCEEEEEECCCCCCHHHHGGG-----CCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCC--CEEEeeeeeccC--CCCceEEEEeccCchhHHHHHHh-----CCHHHHHHHHHHHHHHHHH
Confidence            45678999999996566  999999999831  256889999999 8999988743     8899999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      ||+. |++||||||+|||++.++. .++|+|||.++............++..|+|||.+..     ...++.++|+||+|
T Consensus       146 lH~~-~ivH~Dikp~Nil~~~~~~-~~kl~Dfg~a~~~~~~~~~~~~~~~~~y~aPE~~~~-----~~~~~~~~DiwslG  218 (330)
T 3nsz_A          146 CHSM-GIMHRDVKPHNVMIDHEHR-KLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVD-----YQMYDYSLDMWSLG  218 (330)
T ss_dssp             HHHT-TEECCCCSGGGEEEETTTT-EEEECCCTTCEECCTTCCCCSCCSCGGGCCHHHHTT-----CCCCCTHHHHHHHH
T ss_pred             HHhC-CeeeCCCCHHHEEEcCCCC-EEEEEeCCCceEcCCCCccccccccccccChhhhcC-----CCcCCchhhHHHHH
Confidence            9996 9999999999999997662 499999999987765444455678999999999873     23467899999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +.      +-.+..|..+|..
T Consensus       219 ~i------l~~ll~g~~p~~~  233 (330)
T 3nsz_A          219 CM------LASMIFRKEPFFH  233 (330)
T ss_dssp             HH------HHHHHHTCSSSSC
T ss_pred             HH------HHHHHhCCCCccc
Confidence            73      3355568777744

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.96  E-value=3.2e-28  Score=191.57  Aligned_cols=155  Identities=19%  Similarity=0.198  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+.+++.+ +||  ||+++++++.    .....|+||||+ +++|.+++....  .+++..+..++.|++.||.||
T Consensus        87 ~~~~E~~~l~~l-~h~--~iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~~~--~l~~~~~~~i~~qi~~aL~~L  157 (335)
T 2owb_A           87 KMSMEISIHRSL-AHQ--HVVGFHGFFE----DNDFVFVVLELCRRRSLLELHKRRK--ALTEPEARYYLRQIVLGCQYL  157 (335)
T ss_dssp             HHHHHHHHHHTC-CCT--TBCCEEEEEE----CSSEEEEEECCCTTCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCC--CCCeEEEEEe----cCCeEEEEEecCCCCCHHHHHhccC--CCCHHHHHHHHHHHHHHHHHH
Confidence            345677777777 454  9999999998    567999999999 899999987763  499999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |++ |++|+||||+||+++.++.  ++|+|||.+....... ......+++.|+|||.+...      .++.++|+||+|
T Consensus       158 H~~-~ivH~dlkp~NIl~~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~~Di~slG  228 (335)
T 2owb_A          158 HRN-RVIHRDLKLGNLFLNEDLE--VKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKK------GHSFEVDVWSIG  228 (335)
T ss_dssp             HHT-TEECSCCCGGGEEECTTCC--EEECCCTTCEECCSTTCCBCCCCSCCSSCCHHHHHTS------CBCTHHHHHHHH
T ss_pred             HHC-CCEecCCCchhEEEcCCCC--EEEeeccCceecccCcccccccCCCccccCHHHhccC------CCCchhhHHHHH
Confidence            996 9999999999999998876  9999999998765332 22345789999999999743      367799999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +..+      .+..|..+|..
T Consensus       229 ~il~------~l~~g~~pf~~  243 (335)
T 2owb_A          229 CIMY------TLLVGKPPFET  243 (335)
T ss_dssp             HHHH------HHHHSSCTTCC
T ss_pred             HHHH------HHHHCcCCCCC
Confidence            7322      44446666643

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.96  E-value=2e-28  Score=187.68  Aligned_cols=158  Identities=18%  Similarity=0.267  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++++ +|  |||+++++++.    .....++||||+ +++|.+++.... +.+++..++.++.|++.||.||
T Consensus        57 ~~~~e~~~l~~l-~h--~~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~l  128 (278)
T 3cok_A           57 RVQNEVKIHCQL-KH--PSILELYNYFE----DSNYVYLVLEMCHNGEMNRYLKNRV-KPFSENEARHFMHQIITGMLYL  128 (278)
T ss_dssp             HHHHHHHHHTTB-CC--TTBCCEEEEEE----CSSEEEEEEECCTTEEHHHHHHTCS-SCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CC--CCeEeEEEEEc----cCCeEEEEEecCCCCcHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHH
Confidence            455677777777 45  49999999998    567999999999 899999987643 4599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC-CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD-QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~-~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |+. |++|+||||+||+++.++.  ++|+|||.+........ .....+++.|+|||.+....      ++.++|+||+|
T Consensus       129 H~~-~i~H~dl~p~Nili~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~------~~~~~Di~slG  199 (278)
T 3cok_A          129 HSH-GILHRDLTLSNLLLTRNMN--IKIADFGLATQLKMPHEKHYTLCGTPNYISPEIATRSA------HGLESDVWSLG  199 (278)
T ss_dssp             HHT-TEECSSCCGGGEEECTTCC--EEECCCTTCEECC----------------------------------CTHHHHHH
T ss_pred             HHC-CeecCCCCHHHEEEcCCCC--EEEEeecceeeccCCCCcceeccCCCCcCCcchhcCCC------CCchhhHHHHH
Confidence            996 9999999999999988776  99999999987653322 22457889999999987433      67799999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFRPDP  185 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~  185 (202)
                      +.      +..+..|.++|....
T Consensus       200 ~i------l~~l~~g~~p~~~~~  216 (278)
T 3cok_A          200 CM------FYTLLIGRPPFDTDT  216 (278)
T ss_dssp             HH------HHHHHHSSCSSCCCS
T ss_pred             HH------HHHHHhCCCCCCChh
Confidence            73      335556888886543

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.96  E-value=1.6e-29  Score=202.04  Aligned_cols=167  Identities=13%  Similarity=0.041  Sum_probs=121.4

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeee-------eeeEEecC--------Cce-----EEEEEEccccccHHHHHHHcCCCC
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLL-------DHFQVTGI--------NGT-----HVCTVTEIMAECLCNYMIRQKFQP   63 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~-------~~~~~~~~--------~~~-----~~~lv~e~~~~sL~~~~~~~~~~~   63 (202)
                      +...+|+++++.+++..||||++++       +++...+.        +..     ..|+||||++|+|.+++....  +
T Consensus       118 ~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~~g~L~~~l~~~~--~  195 (377)
T 3byv_A          118 KQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLL--S  195 (377)
T ss_dssp             HHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEEEECTTSCSEEEC------CEEESEEEEEECCSEEHHHHHHHHH--H
T ss_pred             HHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhhhhccCCccccccccCCCceEEEEEEEEEeccCCCHHHHHHhcc--c
Confidence            3456788777777655677999998       55543210        011     388999999999999998653  2


Q ss_pred             CCH-------HHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccch
Q psy320           64 APL-------VVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKI  136 (202)
Q Consensus        64 ~~~-------~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~  136 (202)
                      +++       ..+..++.|++.||.|||+. ||+||||||+|||++.++.  +||+|||+|+....  ......+ +.|+
T Consensus       196 ~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~-~ivHrDikp~NIll~~~~~--~kL~DFG~a~~~~~--~~~~~~g-~~y~  269 (377)
T 3byv_A          196 HSSTHKSLVHHARLQLTLQVIRLLASLHHY-GLVHTYLRPVDIVLDQRGG--VFLTGFEHLVRDGA--RVVSSVS-RGFE  269 (377)
T ss_dssp             TTTTTHHHHHHHHHHHHHHHHHHHHHHHHT-TEECSCCCGGGEEECTTCC--EEECCGGGCEETTC--EEECCCC-TTCC
T ss_pred             cccccccccHHHHHHHHHHHHHHHHHHHhC-CeecCCCCHHHEEEcCCCC--EEEEechhheecCC--cccCCCC-cCcc
Confidence            444       78888999999999999996 9999999999999998876  99999999986432  2223456 8999


Q ss_pred             hhHHHHhh-----hhccCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCCC
Q psy320          137 FCEILEQC-----RLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       137 ape~~~~~-----~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      |||.+...     .......++.++|+||+|+..      -.+..|..+|...
T Consensus       270 aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il------~elltg~~Pf~~~  316 (377)
T 3byv_A          270 PPELEARRATISYHRDRRTLMTFSFDAWALGLVI------YWIWCADLPITKD  316 (377)
T ss_dssp             CHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHHH------HHHHHSSCCC---
T ss_pred             ChhhhcccccccccccccccCChhhhHHHHHHHH------HHHHHCCCCCccc
Confidence            99999865     000011377899999998732      2455577777543

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.96  E-value=4.4e-28  Score=186.35  Aligned_cols=154  Identities=13%  Similarity=0.225  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++.+ +||  ||+++++++.    .....++||||+ +++|.+++....  .+++..+..++.|++.||.||
T Consensus        60 ~~~~e~~~l~~l-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~l  130 (284)
T 2vgo_A           60 QLRREIEIQSHL-RHP--NILRMYNYFH----DRKRIYLMLEFAPRGELYKELQKHG--RFDEQRSATFMEELADALHYC  130 (284)
T ss_dssp             HHHHHHHHHHTC-CCT--TBCCEEEEEE----CSSEEEEEECCCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCC--CEeeEEEEEE----cCCEEEEEEEeCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHH
Confidence            456788888777 455  9999999998    567999999999 889999998764  499999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |+. |++|+||+|+||+++.++.  ++|+|||.+...... ......+++.|+|||.+..      ..++.++|+||+|+
T Consensus       131 H~~-~i~H~dl~p~Nil~~~~~~--~kl~Dfg~~~~~~~~-~~~~~~~~~~y~aPE~~~~------~~~~~~~Di~slG~  200 (284)
T 2vgo_A          131 HER-KVIHRDIKPENLLMGYKGE--LKIADFGWSVHAPSL-RRRTMCGTLDYLPPEMIEG------KTHDEKVDLWCAGV  200 (284)
T ss_dssp             HTT-TEECCCCSGGGEEECTTCC--EEECCCTTCEECSSS-CBCCCCSCGGGCCHHHHTT------CCBCTTHHHHHHHH
T ss_pred             HHC-CceecCCCHHHEEEcCCCC--EEEecccccccCccc-ccccccCCCCcCCHHHhcc------CCCCcccchhhHHH
Confidence            996 9999999999999988876  999999998765422 2234578999999999883      33678999999987


Q ss_pred             HHHHHHHHHHHHhcCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~  183 (202)
                      ..+      .+..|..+|..
T Consensus       201 il~------~l~~g~~pf~~  214 (284)
T 2vgo_A          201 LCY------EFLVGMPPFDS  214 (284)
T ss_dssp             HHH------HHHHSSCTTCC
T ss_pred             HHH------HHHHCCCCCCC
Confidence            332      44557666643

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.96  E-value=7.8e-29  Score=197.57  Aligned_cols=163  Identities=12%  Similarity=0.038  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHHHhcCCCccceeee-------eeeEEecCC-------------ceEEEEEEccccccHHHHHHHcCCCCC
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLL-------DHFQVTGIN-------------GTHVCTVTEIMAECLCNYMIRQKFQPA   64 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~-------~~~~~~~~~-------------~~~~~lv~e~~~~sL~~~~~~~~~~~~   64 (202)
                      ...+|+++++.+++ .||||++++       +++...+..             ....|+||||+.++|.+++.... +.+
T Consensus       108 ~~~~E~~~~~~l~~-~hp~iv~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~-~~~  185 (371)
T 3q60_A          108 RLHEATFAAARLLG-ESPEEARDRRRLLLPSDAVAVQSQPPFAQLSPGQDDYAVANYLLLMPAASVDLELLFSTLD-FVY  185 (371)
T ss_dssp             HHHHHHHHHHHHHC-----------CBCCCCEEEEETTSCSSSBCSCC---CCEEEEEEEECCCSEEHHHHHHHHH-HSC
T ss_pred             HHHHHHHHHHHhcc-cChhhhhhceeEEeeehheecCCCCCeeeccCCcccceeeeEEEEecCCCCCHHHHHHHhc-ccc
Confidence            34567777888875 567977755       455433311             15699999999999999998753 224


Q ss_pred             CHHHH------HHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhh
Q psy320           65 PLVVA------KIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFC  138 (202)
Q Consensus        65 ~~~~~------~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ap  138 (202)
                      +....      ..++.|++.||.|||++ ||+||||||+|||++.++.  +||+|||+|+.......  ...+++.|+||
T Consensus       186 ~~~~~~~~~vk~~i~~qi~~aL~~LH~~-~ivHrDikp~NIll~~~~~--~kL~DFG~a~~~~~~~~--~~~~t~~y~aP  260 (371)
T 3q60_A          186 VFRGDEGILALHILTAQLIRLAANLQSK-GLVHGHFTPDNLFIMPDGR--LMLGDVSALWKVGTRGP--ASSVPVTYAPR  260 (371)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHT-TEEETTCSGGGEEECTTSC--EEECCGGGEEETTCEEE--GGGSCGGGCCH
T ss_pred             chhhhhhhhhHHHHHHHHHHHHHHHHHC-CCccCcCCHHHEEECCCCC--EEEEecceeeecCCCcc--CccCCcCCcCh
Confidence            44555      67779999999999996 9999999999999998877  99999999987642211  34566999999


Q ss_pred             HHHHhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCCC
Q psy320          139 EILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       139 e~~~~~~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      |.+...    ...++.++|+||+|+.      +-.++.|.++|...
T Consensus       261 E~~~~~----~~~~~~~~DiwSlG~i------l~elltg~~Pf~~~  296 (371)
T 3q60_A          261 EFLNAS----TATFTHALNAWQLGLS------IYRVWCLFLPFGLV  296 (371)
T ss_dssp             HHHTCS----EEECCHHHHHHHHHHH------HHHHHHSSCSTTBC
T ss_pred             hhccCC----CCCcCccccHHHHHHH------HHHHHhCCCCCCCc
Confidence            999731    1347889999999973      33556698888755

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.96  E-value=1.1e-28  Score=189.50  Aligned_cols=156  Identities=15%  Similarity=0.150  Sum_probs=113.2

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+..++++ +||  ||+++++++.     ....|+||||+ +++|.+++.... ..+++..+..++.|++.||.||
T Consensus        62 ~~~~e~~~l~~l-~h~--~iv~~~~~~~-----~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~l  132 (281)
T 1mp8_A           62 KFLQEALTMRQF-DHP--HIVKLIGVIT-----ENPVWIIMELCTLGELRSFLQVRK-YSLDLASLILYAYQLSTALAYL  132 (281)
T ss_dssp             HHHHHHHHHHTC-CCT--TBCCEEEEEC-----SSSCEEEEECCTTEEHHHHHHHTT-TTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCC--ccceEEEEEc-----cCccEEEEecCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHH
Confidence            455677777777 455  9999999985     34678999999 889999997653 4599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC--CCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ--QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~--~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      |+. |++|+||||+||+++.++.  ++|+|||.++........  ....+++.|+|||.+...      .++.++|+||+
T Consensus       133 H~~-~i~H~dlkp~Nil~~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~------~~~~~~Di~sl  203 (281)
T 1mp8_A          133 ESK-RFVHRDIAARNVLVSSNDC--VKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFR------RFTSASDVWMF  203 (281)
T ss_dssp             HHT-TCCCSCCSGGGEEEEETTE--EEECC-------------------CCGGGCCHHHHHHC------CCSHHHHHHHH
T ss_pred             HhC-CeecccccHHHEEECCCCC--EEECccccccccCcccccccccCCCcccccChhhcccC------CCCCccCchHH
Confidence            996 9999999999999998876  999999999876543221  234567789999999743      37779999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCC
Q psy320          162 KMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      |+..+     +.+..|.++|..
T Consensus       204 G~~l~-----ell~~g~~pf~~  220 (281)
T 1mp8_A          204 GVCMW-----EILMHGVKPFQG  220 (281)
T ss_dssp             HHHHH-----HHHTTSCCTTTT
T ss_pred             HHHHH-----HHHhcCCCCCCc
Confidence            86322     223347777653

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.96  E-value=1.6e-28  Score=188.61  Aligned_cols=156  Identities=13%  Similarity=0.185  Sum_probs=125.8

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ..+.+|+++++.+ +||  ||+++++++.    .....++||||+ +++|.+++.... +++++..+..++.|++.||.|
T Consensus        64 ~~~~~E~~~l~~l-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~l~~  135 (283)
T 3gen_A           64 DEFIEEAKVMMNL-SHE--KLVQLYGVCT----KQRPIFIITEYMANGCLLNYLREMR-HRFQTQQLLEMCKDVCEAMEY  135 (283)
T ss_dssp             HHHHHHHHHHHTC-CCT--TBCCEEEEEC----SSSSEEEEECCCTTCBHHHHHHCGG-GCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC-CCC--CEeeEEEEEe----cCCCeEEEEeccCCCcHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHH
Confidence            3456788888888 455  9999999998    567899999999 899999997633 459999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc--CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH--DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~--~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      ||++ |++|+||||+||+++.++.  ++|+|||.+.......  ......+++.|+|||.+....      ++.++|+||
T Consensus       136 lH~~-~i~H~dikp~Nili~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~------~~~~~Dv~s  206 (283)
T 3gen_A          136 LESK-QFLHRDLAARNCLVNDQGV--VKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSK------FSSKSDIWA  206 (283)
T ss_dssp             HHHT-TCCCSSCSGGGEEECTTSC--EEECSTTGGGGBCCHHHHSTTSTTSCGGGCCHHHHHHCC------CSHHHHHHH
T ss_pred             HHHC-CccCCCCccceEEEcCCCC--EEEccccccccccccccccccCCccCcccCCHHHhccCC------CCchhhHHH
Confidence            9996 9999999999999998776  9999999998764422  222345678899999998443      777999999


Q ss_pred             HHHHHHHHHHHHHHHh-cCCCCC
Q psy320          161 IKMYTTFCEILEQCRL-NHQDFR  182 (202)
Q Consensus       161 l~~~~~~~~~~~~~~~-~~~~~~  182 (202)
                      +|+..+      .+.. |..+|.
T Consensus       207 lG~~l~------~l~t~g~~p~~  223 (283)
T 3gen_A          207 FGVLMW------EIYSLGKMPYE  223 (283)
T ss_dssp             HHHHHH------HHHTTTCCTTT
T ss_pred             HHHHHH------HHHhCCCCCcc
Confidence            986322      4443 666554

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.96  E-value=1.2e-28  Score=194.16  Aligned_cols=144  Identities=15%  Similarity=0.170  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC----------------------C
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK----------------------F   61 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~----------------------~   61 (202)
                      .+.+|+++++++ +||  ||+++++++.    .+...|+||||+ +++|.+++....                      .
T Consensus        96 ~~~~E~~~l~~l-~hp--~iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (343)
T 1luf_A           96 DFQREAALMAEF-DNP--NIVKLLGVCA----VGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGP  168 (343)
T ss_dssp             HHHHHHHHHHTC-CCT--TBCCEEEEEC----SSSSCEEEEECCTTCBHHHHHHHTCC----------------------
T ss_pred             HHHHHHHHHHhC-CCC--CEEEEEEEEc----cCCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCC
Confidence            356788888888 455  9999999998    566899999999 889999998742                      1


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC---CCCCCCCccchhh
Q psy320           62 QPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD---QQSSSKTKSKIFC  138 (202)
Q Consensus        62 ~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~ap  138 (202)
                      +.+++..++.++.|++.||.|||+. |++|+||||+||+++.++.  +||+|||.++.......   .....+++.|+||
T Consensus       169 ~~l~~~~~~~i~~qi~~~l~~LH~~-~ivH~Dlkp~NIl~~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aP  245 (343)
T 1luf_A          169 PPLSCAEQLCIARQVAAGMAYLSER-KFVHRDLATRNCLVGENMV--VKIADFGLSRNIYSADYYKADGNDAIPIRWMPP  245 (343)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEECGGGC--EEECCCSCHHHHTGGGCBC----CCBCGGGCCH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhC-CeecCCCCcceEEECCCCe--EEEeecCCCcccccCccccccCCCcccceecCh
Confidence            4699999999999999999999996 9999999999999988776  99999999987643221   2234678899999


Q ss_pred             HHHHhhhhccCCCCCCCcchhhHHHH
Q psy320          139 EILEQCRLNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus       139 e~~~~~~~~~~~~~~~~~Diwsl~~~  164 (202)
                      |.+....      ++.++|+||+|+.
T Consensus       246 E~~~~~~------~~~~~Di~slG~i  265 (343)
T 1luf_A          246 ESIFYNR------YTTESDVWAYGVV  265 (343)
T ss_dssp             HHHHHCC------CCHHHHHHHHHHH
T ss_pred             hhhccCC------cCcccccHHHHHH
Confidence            9998433      7789999999863

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.96  E-value=4.8e-28  Score=186.99  Aligned_cols=155  Identities=19%  Similarity=0.197  Sum_probs=126.1

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++.+ +||  ||+++++++.    .....++||||+ +++|.+++....  .+++..+..++.|++.||.||
T Consensus        61 ~~~~e~~~l~~l-~h~--~iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~i~~qi~~~l~~l  131 (294)
T 2rku_A           61 KMSMEISIHRSL-AHQ--HVVGFHGFFE----DNDFVFVVLELCRRRSLLELHKRRK--ALTEPEARYYLRQIVLGCQYL  131 (294)
T ss_dssp             HHHHHHHHHHTC-CCT--TBCCEEEEEE----CSSEEEEEEECCTTCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCC--CEeeeeeeec----cCCEEEEEEecCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHH
Confidence            345677777777 454  9999999998    567999999999 899999987763  499999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |+. |++|+||||+||+++.++.  ++|+|||.+....... ......+++.|+|||.+..      ..++.++|+||+|
T Consensus       132 H~~-~i~H~dl~p~Nil~~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~Di~slG  202 (294)
T 2rku_A          132 HRN-RVIHRDLKLGNLFLNEDLE--VKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSK------KGHSFEVDVWSIG  202 (294)
T ss_dssp             HHT-TEECCCCCGGGEEECTTCC--EEECCCTTCEECCSTTCCBCCCCSCCSSCCHHHHTT------SCBCTHHHHHHHH
T ss_pred             HHC-CccccCCChHhEEEcCCCC--EEEEeccCceecccCccccccccCCCCcCCcchhcc------CCCCchhhHHHHH
Confidence            996 9999999999999998776  9999999998765332 2234578999999999873      3367799999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +..+      .+..|..+|..
T Consensus       203 ~~l~------~l~~g~~p~~~  217 (294)
T 2rku_A          203 CIMY------TLLVGKPPFET  217 (294)
T ss_dssp             HHHH------HHHHSSCTTCC
T ss_pred             HHHH------HHHhCCCCCCC
Confidence            7332      44457666643

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.96  E-value=4.2e-28  Score=192.91  Aligned_cols=161  Identities=19%  Similarity=0.225  Sum_probs=129.4

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEec-CCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTG-INGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~-~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ....+|+++++++ +||  ||+++++++.... ......|+||||++++|.+++...   ++++..+..++.|++.||.|
T Consensus        70 ~~~~~E~~~l~~l-~h~--niv~~~~~~~~~~~~~~~~~~iv~e~~~~~L~~~l~~~---~~~~~~~~~i~~qi~~aL~~  143 (364)
T 3qyz_A           70 QRTLREIKILLRF-RHE--NIIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQ---HLSNDHICYFLYQILRGLKY  143 (364)
T ss_dssp             HHHHHHHHHHHHC-CCT--TBCCCCEEECCSSTTTCCCEEEEEECCSEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc-CCC--CCccceeEEecCCccccceEEEEEcccCcCHHHHHHhC---CCCHHHHHHHHHHHHHHHHH
Confidence            3456788888888 455  9999999997432 123578999999988999998764   49999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC----CCCCCCCccchhhHHHHhhhhccCCCCCCCcch
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD----QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDP  158 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~----~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Di  158 (202)
                      ||+. |++||||||+||+++.++.  ++|+|||.+........    .....+|+.|+|||.+..     ...++.++|+
T Consensus       144 LH~~-~ivH~Dikp~NIl~~~~~~--~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~~Di  215 (364)
T 3qyz_A          144 IHSA-NVLHRDLKPSNLLLNTTCD--LKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLN-----SKGYTKSIDI  215 (364)
T ss_dssp             HHHT-TEECCCCCGGGEEECTTCC--EEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCHHHHHT-----BCSCSTHHHH
T ss_pred             HHHC-CeecCCCChHhEEECCCCC--EEEEeCcceEecCCCCCccccccccccccCCCCCHHhcC-----CCCCCcchhH
Confidence            9996 9999999999999998877  99999999987654322    123578999999999762     2346789999


Q ss_pred             hhHHHHHHHHHHHHHHHhcCCCCCCC
Q psy320          159 TSIKMYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       159 wsl~~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      ||+|+.      +..+..|.++|...
T Consensus       216 wslG~i------l~ell~g~~pf~~~  235 (364)
T 3qyz_A          216 WSVGCI------LAEMLSNRPIFPGK  235 (364)
T ss_dssp             HHHHHH------HHHHHHSSCSSCCS
T ss_pred             HHHHHH------HHHHHHCCCCCCCC
Confidence            999973      33556688888643

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.96  E-value=3.8e-28  Score=190.73  Aligned_cols=157  Identities=23%  Similarity=0.273  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+++++.+ +||  ||+++++++.    .....|+||||+ +++|.++....  +++++..+..++.|++.||.||
T Consensus        70 ~~~~E~~~l~~l-~h~--~iv~~~~~~~----~~~~~~lv~e~~~~~~l~~~~~~~--~~~~~~~~~~~~~qi~~~l~~L  140 (331)
T 4aaa_A           70 IAMREIKLLKQL-RHE--NLVNLLEVCK----KKKRWYLVFEFVDHTILDDLELFP--NGLDYQVVQKYLFQIINGIGFC  140 (331)
T ss_dssp             HHHHHHHHHHHC-CCT--TBCCEEEEEE----ETTEEEEEEECCSEEHHHHHHHST--TCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhC-CCC--CEeeEEEEee----cCCEEEEEEecCCcchHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHH
Confidence            345788888888 455  9999999998    466899999999 77777765544  4599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC-CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD-QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~-~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |+. |++|+||||+||+++.++.  ++|+|||.+........ .....+++.|+|||.+..     ...++.++|+||+|
T Consensus       141 H~~-~ivH~dlkp~Nil~~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~-----~~~~~~~~Di~slG  212 (331)
T 4aaa_A          141 HSH-NIIHRDIKPENILVSQSGV--VKLCDFGFARTLAAPGEVYDDEVATRWYRAPELLVG-----DVKYGKAVDVWAIG  212 (331)
T ss_dssp             HHT-TCCCCCCCGGGEEECTTSC--EEECCCTTC------------CCCCCTTCCHHHHTT-----CTTCCTHHHHHHHH
T ss_pred             HHC-CEEccCcChheEEEcCCCc--EEEEeCCCceeecCCccccCCCcCCccccCcccccC-----CCCcchHHHHHHHH
Confidence            996 9999999999999988876  99999999987654322 234578999999999873     23467899999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      +.      +-.+..|.++|...
T Consensus       213 ~i------l~~l~~g~~pf~~~  228 (331)
T 4aaa_A          213 CL------VTEMFMGEPLFPGD  228 (331)
T ss_dssp             HH------HHHHHHSSCSCCCS
T ss_pred             HH------HHHHHhCCCCCCCC
Confidence            73      33555687777644

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.96  E-value=9.3e-29  Score=197.43  Aligned_cols=156  Identities=13%  Similarity=0.154  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+++++++ +||  ||+++++++.    .....++||||+ +++|.+++.... ..+++..+..++.|++.||.||
T Consensus        92 ~~~~E~~~l~~l-~h~--niv~~~~~~~----~~~~~~lv~e~~~~~sL~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~L  163 (373)
T 2qol_A           92 DFLGEASIMGQF-DHP--NIIRLEGVVT----KSKPVMIVTEYMENGSLDSFLRKHD-AQFTVIQLVGMLRGIASGMKYL  163 (373)
T ss_dssp             HHHHHHHHHTTC-CCT--TBCCEEEEEC----SSSSCEEEEECCTTCBHHHHHHTTT-TCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCC--CCCeEEEEEe----eCCceEEEEeCCCCCcHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHH
Confidence            456788888777 455  9999999998    566899999999 899999997653 4599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC----CCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ----SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~----~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      |++ |++||||||+|||++.++.  +||+|||+++.........    ...++..|+|||.+...      .++.++|+|
T Consensus       164 H~~-~ivH~Dlkp~NIll~~~~~--~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~------~~~~~~Dv~  234 (373)
T 2qol_A          164 SDM-GYVHRDLAARNILINSNLV--CKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYR------KFTSASDVW  234 (373)
T ss_dssp             HHT-TCCCSCCCGGGEEECTTCC--EEECCC----------------------CTTSCHHHHHHC------CCCHHHHHH
T ss_pred             HHC-CeeCCCCCcceEEEcCCCC--EEECcCccccccccCCccceeccCCCcCCCccChhhhccC------CcCchhcHH
Confidence            996 9999999999999988776  9999999998765322111    22346689999999843      377899999


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCC
Q psy320          160 SIKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       160 sl~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      |+|+..+     +.+..|..+|.
T Consensus       235 SlG~il~-----ellt~g~~P~~  252 (373)
T 2qol_A          235 SYGIVLW-----EVMSYGERPYW  252 (373)
T ss_dssp             HHHHHHH-----HHHTTC-CTTT
T ss_pred             HHHHHHH-----HHHhCCCCCCC
Confidence            9986322     22333666663

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.96  E-value=4.6e-29  Score=192.09  Aligned_cols=144  Identities=14%  Similarity=0.116  Sum_probs=117.4

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +.+.+|+++++++ +||  ||+++++++.    .+...++||||+ +++|.+++.... ..+++..+..++.|++.||.|
T Consensus        57 ~~~~~E~~~l~~l-~h~--~iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~L~~  128 (289)
T 4fvq_A           57 ESFFEAASMMSKL-SHK--HLVLNYGVCV----CGDENILVQEFVKFGSLDTYLKKNK-NCINILWKLEVAKQLAAAMHF  128 (289)
T ss_dssp             HHHHHHHHHHHTS-CCT--TBCCEEEEEC----CTTCCEEEEECCTTCBHHHHHHHTG-GGCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CEeEEEEEEE----eCCCCEEEEECCCCCCHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHH
Confidence            3456788888888 455  9999999998    566789999999 899999997753 349999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcc------eeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCc
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVY------IMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRV  156 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~------~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~  156 (202)
                      ||++ |++||||||+|||++.++..      .++|+|||.+......   ....++..|+|||.+...     ..++.++
T Consensus       129 LH~~-~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~y~aPE~~~~~-----~~~~~~~  199 (289)
T 4fvq_A          129 LEEN-TLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVLPK---DILQERIPWVPPECIENP-----KNLNLAT  199 (289)
T ss_dssp             HHHT-TCCCCCCCGGGEEEEECCBGGGTBCCEEEECCCCSCTTTSCH---HHHHHTTTTSCHHHHHCG-----GGCCHHH
T ss_pred             HhhC-CeECCCcCcceEEEecCCcccccccceeeeccCcccccccCc---cccCCcCcccCHHHhCCC-----CCCCchh
Confidence            9996 99999999999999887641      2899999998765322   123467789999999841     2367799


Q ss_pred             chhhHHHH
Q psy320          157 DPTSIKMY  164 (202)
Q Consensus       157 Diwsl~~~  164 (202)
                      |+||+|+.
T Consensus       200 DiwslG~i  207 (289)
T 4fvq_A          200 DKWSFGTT  207 (289)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999863

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.96  E-value=1.1e-28  Score=191.99  Aligned_cols=157  Identities=13%  Similarity=0.108  Sum_probs=124.7

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCC----------------------
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKF----------------------   61 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~----------------------   61 (202)
                      ...+|+++++.+ +|  |||+++++++.    .....++||||+ +++|.+++.....                      
T Consensus        72 ~~~~E~~~l~~l-~h--p~iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (314)
T 2ivs_A           72 DLLSEFNVLKQV-NH--PHVIKLYGACS----QDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDE  144 (314)
T ss_dssp             HHHHHHHHHTTC-CC--TTBCCEEEEEC----SSSSCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------
T ss_pred             HHHHHHHHHhhC-CC--CceeeEEEEEe----cCCceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccc
Confidence            345677777777 44  59999999998    566899999999 8999999987532                      


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC---CCCCCCCccchhh
Q psy320           62 QPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD---QQSSSKTKSKIFC  138 (202)
Q Consensus        62 ~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~ap  138 (202)
                      ..+++..+..++.|++.||.|||+. |++|+||||+||+++.++.  ++|+|||.+........   .....+++.|+||
T Consensus       145 ~~~~~~~~~~i~~qi~~~l~~lH~~-~ivH~dikp~NIli~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  221 (314)
T 2ivs_A          145 RALTMGDLISFAWQISQGMQYLAEM-KLVHRDLAARNILVAEGRK--MKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAI  221 (314)
T ss_dssp             CEECHHHHHHHHHHHHHHHHHHHHT-TEECCCCSGGGEEEETTTE--EEECCCTTCEECTTTSCEECSSCCCSCGGGCCH
T ss_pred             cCcCHHHHHHHHHHHHHHHHHHHHC-CCcccccchheEEEcCCCC--EEEccccccccccccccceeccCCCCcccccCh
Confidence            2388999999999999999999996 9999999999999998776  99999999987643221   2234577889999


Q ss_pred             HHHHhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHh-cCCCCCC
Q psy320          139 EILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRL-NHQDFRP  183 (202)
Q Consensus       139 e~~~~~~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~-~~~~~~~  183 (202)
                      |.+....      ++.++|+||+|+..      ..+.. |..+|..
T Consensus       222 E~~~~~~------~~~~~Di~slG~il------~el~t~g~~p~~~  255 (314)
T 2ivs_A          222 ESLFDHI------YTTQSDVWSFGVLL------WEIVTLGGNPYPG  255 (314)
T ss_dssp             HHHHHCE------ECHHHHHHHHHHHH------HHHHTTSCCSSTT
T ss_pred             hhhcCCC------cCchhhHHHHHHHH------HHHHhCCCCCCCC
Confidence            9998443      67899999998732      24444 6666643

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.96  E-value=1.3e-28  Score=194.17  Aligned_cols=148  Identities=18%  Similarity=0.315  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC-----------------------
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK-----------------------   60 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~-----------------------   60 (202)
                      ...+|+++++++ +||  ||++++++|.    +....|+||||+ +++|.+++....                       
T Consensus        74 ~~~~E~~~l~~l-~hp--niv~~~~~~~----~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (345)
T 3hko_A           74 RIKTEVRLMKKL-HHP--NIARLYEVYE----DEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECN  146 (345)
T ss_dssp             HHHHHHHHHHHC-CCT--TBCCEEEEEE----CSSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHH
T ss_pred             HHHHHHHHHHhC-CCC--Ccceeehhhc----cCCeEEEEEeCCCCCcHHHHHHHhhccccccccccccccccccccccc
Confidence            456789989888 455  9999999998    577999999999 999999884210                       


Q ss_pred             ---------------CCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC
Q psy320           61 ---------------FQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD  125 (202)
Q Consensus        61 ---------------~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~  125 (202)
                                     ...+++..++.++.|++.||.|||++ |++|+||||+||+++.++...+||+|||.+........
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~-~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~  225 (345)
T 3hko_A          147 EEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHYLHNQ-GICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNN  225 (345)
T ss_dssp             HHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHHHHHHHHT-TEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTC
T ss_pred             ccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHC-CccccCCChhhEEEecCCCceEEEeeccccccccccCc
Confidence                           11246788899999999999999996 99999999999999877644599999999987643221


Q ss_pred             -----CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHH
Q psy320          126 -----QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus       126 -----~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~  164 (202)
                           .....+++.|+|||.+...    ...++.++|+||+|+.
T Consensus       226 ~~~~~~~~~~gt~~y~aPE~~~~~----~~~~~~~~DiwslG~i  265 (345)
T 3hko_A          226 GEYYGMTTKAGTPYFVAPEVLNTT----NESYGPKCDAWSAGVL  265 (345)
T ss_dssp             C--------CCCGGGCCHHHHTCS----SSCCCTHHHHHHHHHH
T ss_pred             cccccccccCCCccccCchhhccC----CCCCCcHHHHHHHHHH
Confidence                 2245789999999998632    2447789999999863

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.96  E-value=2.3e-29  Score=201.17  Aligned_cols=142  Identities=12%  Similarity=0.162  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      +.+|+++++++ +||  ||+++++++.    .+...|+||||+ +++|.+++.... ..+++..+..++.|++.||.|||
T Consensus       159 ~~~E~~~l~~l-~hp--niv~~~~~~~----~~~~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~LH  230 (377)
T 3cbl_A          159 FLQEARILKQY-SHP--NIVRLIGVCT----QKQPIYIVMELVQGGDFLTFLRTEG-ARLRVKTLLQMVGDAAAGMEYLE  230 (377)
T ss_dssp             TTHHHHHHTTC-CCT--TBCCEEEEEC----SSSSCEEEEECCTTCBHHHHHHHHG-GGCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCC--CEEEEEEEEe----cCCCcEEEEEcCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHH
Confidence            45688888877 455  9999999998    566799999999 899999997654 35999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC---CCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ---QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~---~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      ++ |++||||||+|||++.++.  +||+|||+++........   ....++..|+|||.+....      ++.++|+||+
T Consensus       231 ~~-~ivHrDlkp~Nil~~~~~~--~kl~DfG~s~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~------~~~~~Dvwsl  301 (377)
T 3cbl_A          231 SK-CCIHRDLAARNCLVTEKNV--LKISDFGMSREEADGVYAASGGLRQVPVKWTAPEALNYGR------YSSESDVWSF  301 (377)
T ss_dssp             HT-TEECSCCSGGGEEECTTCC--EEECCGGGCEECTTSEEECCSSCCEEEGGGSCHHHHHHCE------EEHHHHHHHH
T ss_pred             HC-CcCCcccCHHHEEEcCCCc--EEECcCCCceecCCCceeecCCCCCCCcCcCCHhHhccCC------CCchhhHHHH
Confidence            96 9999999999999988876  999999999865322111   1123456799999998543      6779999999


Q ss_pred             HHH
Q psy320          162 KMY  164 (202)
Q Consensus       162 ~~~  164 (202)
                      |+.
T Consensus       302 G~i  304 (377)
T 3cbl_A          302 GIL  304 (377)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            863

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.96  E-value=1.5e-28  Score=192.99  Aligned_cols=158  Identities=16%  Similarity=0.179  Sum_probs=126.1

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC------------CCCCCHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK------------FQPAPLVVAKI   71 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~------------~~~~~~~~~~~   71 (202)
                      ...+|+++++.+.+||  ||+++++++.    .+...++||||+ +++|.+++....            ...+++..+..
T Consensus        95 ~~~~E~~~l~~l~~h~--~iv~~~~~~~----~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (333)
T 2i1m_A           95 ALMSELKIMSHLGQHE--NIVNLLGACT----HGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLH  168 (333)
T ss_dssp             HHHHHHHHHHHHCCCT--TBCCEEEEEC----SSSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHH
T ss_pred             HHHHHHHHHHhhcCCC--CeeeEEEEEe----cCCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHH
Confidence            4567899999995555  9999999998    566899999999 889999997542            23589999999


Q ss_pred             HHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC---CCCCCCccchhhHHHHhhhhcc
Q psy320           72 IVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ---QSSSKTKSKIFCEILEQCRLNQ  148 (202)
Q Consensus        72 ~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~---~~~~~~~~~~ape~~~~~~~~~  148 (202)
                      ++.|++.||.|||+. |++|+||||+||+++.++.  ++|+|||.+.........   ....+++.|+|||.+...    
T Consensus       169 ~~~qi~~~l~~lH~~-~ivH~Dlkp~NIl~~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~----  241 (333)
T 2i1m_A          169 FSSQVAQGMAFLASK-NCIHRDVAARNVLLTNGHV--AKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDC----  241 (333)
T ss_dssp             HHHHHHHHHHHHHHT-TEECSCCSGGGCEEEGGGE--EEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHC----
T ss_pred             HHHHHHHHHHHHhcC-CcccCCcccceEEECCCCe--EEECccccccccccccceeecCCCCCCccccCHHHhccC----
Confidence            999999999999996 9999999999999998776  999999999876433221   134567789999998843    


Q ss_pred             CCCCCCCcchhhHHHHHHHHHHHHHHHh-cCCCCCC
Q psy320          149 DFRLDPRVDPTSIKMYTTFCEILEQCRL-NHQDFRP  183 (202)
Q Consensus       149 ~~~~~~~~Diwsl~~~~~~~~~~~~~~~-~~~~~~~  183 (202)
                        .++.++|+||+|+..+      .+.. |.++|..
T Consensus       242 --~~~~~~Di~slG~il~------el~t~g~~p~~~  269 (333)
T 2i1m_A          242 --VYTVQSDVWSYGILLW------EIFSLGLNPYPG  269 (333)
T ss_dssp             --CCCHHHHHHHHHHHHH------HHTTTSCCSSTT
T ss_pred             --CCChHHHHHHHHHHHH------HHHcCCCCCCcc
Confidence              3778999999987322      4443 7666653

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.96  E-value=4.9e-29  Score=193.00  Aligned_cols=158  Identities=16%  Similarity=0.254  Sum_probs=122.1

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++++ +||  ||+++++++...  .....|+||||+ +++|.++...   +.+++..+..++.|++.||.||
T Consensus        82 ~~~~E~~~l~~l-~h~--~iv~~~~~~~~~--~~~~~~lv~e~~~~~~l~~~~~~---~~~~~~~~~~~~~qi~~~l~~l  153 (298)
T 2zv2_A           82 QVYQEIAILKKL-DHP--NVVKLVEVLDDP--NEDHLYMVFELVNQGPVMEVPTL---KPLSEDQARFYFQDLIKGIEYL  153 (298)
T ss_dssp             HHHHHHHHHHTC-CCT--TBCCEEEEEECS--SSSEEEEEEECCTTCBSCCSSCS---SCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCC--CCCeEEEEEEcC--CCCEEEEEEecCCCCcHHHHhhc---CCCCHHHHHHHHHHHHHHHHHH
Confidence            456788888888 455  999999999831  256899999999 8888775432   4599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC-CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD-QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~-~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |+. |++||||||+||+++.++.  +||+|||.++....... .....+++.|+|||.+....   ...++.++|+||+|
T Consensus       154 H~~-~ivH~Dlkp~Nil~~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~~~~~~~~Di~slG  227 (298)
T 2zv2_A          154 HYQ-KIIHRDIKPSNLLVGEDGH--IKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETR---KIFSGKALDVWAMG  227 (298)
T ss_dssp             HHT-TEECCCCCGGGEEECTTSC--EEECCCTTCEECSSSSCEECCCCSCGGGCCGGGCCTTC---CCEESHHHHHHHHH
T ss_pred             HHC-CeeccCCCHHHEEECCCCC--EEEecCCCccccccccccccCCcCCccccChhhhccCC---CCCCCchhhhHhHH
Confidence            996 9999999999999998877  99999999987653321 23457999999999987322   11125589999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +..+      .+..|..+|.
T Consensus       228 ~~l~------~l~~g~~pf~  241 (298)
T 2zv2_A          228 VTLY------CFVFGQCPFM  241 (298)
T ss_dssp             HHHH------HHHHSSCSSC
T ss_pred             HHHH------HHHHCCCCCC
Confidence            6322      3444555553

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.96  E-value=2e-28  Score=186.87  Aligned_cols=154  Identities=18%  Similarity=0.218  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++.+ +||  ||+++++++.    .+...++||||+ +++|.+++..   +++++..+..++.|++.||.||
T Consensus        52 ~~~~e~~~l~~l-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~i~~~l~~~l~~l  121 (271)
T 3dtc_A           52 NVRQEAKLFAML-KHP--NIIALRGVCL----KEPNLCLVMEFARGGPLNRVLSG---KRIPPDILVNWAVQIARGMNYL  121 (271)
T ss_dssp             HHHHHHHHHHHC-CCT--TBCCEEEEEC----CC--CEEEEECCTTEEHHHHHTS---SCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc-CCC--CEeeEEEEEe----cCCceEEEEEcCCCCCHHHHhhc---CCCCHHHHHHHHHHHHHHHHHH
Confidence            456788888888 455  9999999998    566899999999 8999998853   4599999999999999999999


Q ss_pred             HhhCC---ccccCCCCCceeeecCC------cceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCC
Q psy320           84 HTKHN---LVHTSIKPESIFFKADH------VYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDP  154 (202)
Q Consensus        84 h~~~~---ivH~dl~p~nil~~~~~------~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~  154 (202)
                      |++ |   ++|+||||+||+++.+.      ...++|+|||.+....... .....+++.|+|||.+....      ++.
T Consensus       122 H~~-~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~------~~~  193 (271)
T 3dtc_A          122 HDE-AIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTT-KMSAAGAYAWMAPEVIRASM------FSK  193 (271)
T ss_dssp             HHS-SSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC--------------CCGGGSCHHHHHHCC------CSH
T ss_pred             HhC-CCCceeecCCchHHEEEecccccccccCcceEEccCCccccccccc-ccCCCCccceeCHHHhccCC------CCc
Confidence            996 8   89999999999998621      2349999999998764322 22457899999999997433      677


Q ss_pred             CcchhhHHHHHHHHHHHHHHHhcCCCCC
Q psy320          155 RVDPTSIKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       155 ~~Diwsl~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      ++|+||+|+..+      .+..|..+|.
T Consensus       194 ~~Di~slG~~l~------~l~~g~~p~~  215 (271)
T 3dtc_A          194 GSDVWSYGVLLW------ELLTGEVPFR  215 (271)
T ss_dssp             HHHHHHHHHHHH------HHHHCCCTTT
T ss_pred             hhhHHHHHHHHH------HHHhCCCCCC
Confidence            999999986332      4444666654

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.96  E-value=6.4e-29  Score=201.17  Aligned_cols=159  Identities=18%  Similarity=0.288  Sum_probs=120.4

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+++++++ +||  ||+++++++.     ....|+||||+ +++|.+++...  +++++..++.++.|++.||.|||
T Consensus       187 ~~~E~~~l~~l-~hp--niv~l~~~~~-----~~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~LH  256 (419)
T 3i6u_A          187 VETEIEILKKL-NHP--CIIKIKNFFD-----AEDYYIVLELMEGGELFDKVVGN--KRLKEATCKLYFYQMLLAVQYLH  256 (419)
T ss_dssp             HHHHHHHHHHC-CCT--TBCCCCEEEE-----SSEEEEEEECCTTCBGGGGTSSS--CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCC--CEeeEEEEEe-----cCceEEEEEcCCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHH
Confidence            46799999998 555  9999999986     33579999999 89998887654  45999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCC-cceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADH-VYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~-~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      +. |++||||||+|||++.++ ...+||+|||.++............+++.|+|||.+....   ...++.++|+||+|+
T Consensus       257 ~~-~ivHrDlkp~NIll~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~~~~~~~~DiwslG~  332 (419)
T 3i6u_A          257 EN-GIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVG---TAGYNRAVDCWSLGV  332 (419)
T ss_dssp             HT-TCCCSCCCGGGEEESSSSSSCCEEECCSSTTTSCC-----------CTTCCTTTTC-------CTTHHHHHHHHHHH
T ss_pred             HC-CccccCCChHhEEEecCCCcceEEEeecccceecCCCccccccCCCCCccCceeeecCC---CCCCCchhhhHhHHH
Confidence            96 999999999999997643 2349999999998876444444567999999999985322   234667999999997


Q ss_pred             HHHHHHHHHHHHhcCCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      .      +..++.|.++|...
T Consensus       333 i------l~~lltg~~pf~~~  347 (419)
T 3i6u_A          333 I------LFICLSGYPPFSEH  347 (419)
T ss_dssp             H------HHHHHHSSCSSCCC
T ss_pred             H------HHHHHHCCCCCCCC
Confidence            3      33666688888643

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.96  E-value=1.9e-28  Score=193.99  Aligned_cols=161  Identities=12%  Similarity=0.052  Sum_probs=127.9

Q ss_pred             HHHHHHHHHHHHhcCCCcccee---------------eeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMK---------------LLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVA   69 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~---------------l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~   69 (202)
                      ...+|+++++++ +||  ||++               +++++..   .....|+||||++++|.+++.....+.+++..+
T Consensus        88 ~~~~E~~~l~~l-~h~--niv~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~  161 (352)
T 2jii_A           88 RLFNEQNFFQRA-AKP--LQVNKWKKLYSTPLLAIPTCMGFGVH---QDKYRFLVLPSLGRSLQSALDVSPKHVLSERSV  161 (352)
T ss_dssp             THHHHHHHHHHH-CCH--HHHHHHHHHTTCTTCSCCCCCEEEEE---TTTEEEEEEECCCEEHHHHHHHSGGGCCCHHHH
T ss_pred             hHHHHHHHHHHh-ccc--chhhhhhhhccCCccCccchhhcccc---CCcEEEEEecCCCcCHHHHHHhCCcCCCCHHHH
Confidence            456889999998 454  7776               5666653   356899999999999999998764456999999


Q ss_pred             HHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC--------CCCCCCccchhhHHH
Q psy320           70 KIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ--------QSSSKTKSKIFCEIL  141 (202)
Q Consensus        70 ~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~--------~~~~~~~~~~ape~~  141 (202)
                      ..++.|++.||.|||++ |++||||||+||+++.++...++|+|||.++........        ....+++.|+|||.+
T Consensus       162 ~~i~~qi~~~L~~LH~~-~ivH~Dikp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  240 (352)
T 2jii_A          162 LQVACRLLDALEFLHEN-EYVHGNVTAENIFVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLH  240 (352)
T ss_dssp             HHHHHHHHHHHHHHHHT-TCBCSCCCGGGEEEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHH
T ss_pred             HHHHHHHHHHHHHHHhC-CccCCCCCHHHEEEcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHH
Confidence            99999999999999996 999999999999999876334999999999876543221        234789999999998


Q ss_pred             HhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCCC
Q psy320          142 EQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       142 ~~~~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      ..      ..++.++|+||+|+..+      .+..|..+|...
T Consensus       241 ~~------~~~~~~~Di~slG~il~------el~~g~~pf~~~  271 (352)
T 2jii_A          241 KG------CGPSRRSDLQSLGYCML------KWLYGFLPWTNC  271 (352)
T ss_dssp             TT------CCCCHHHHHHHHHHHHH------HHHHSCCTTGGG
T ss_pred             cc------CCCCchhhHHHHHHHHH------HHHhCCCCcccC
Confidence            73      34778999999987333      455577777543

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.96  E-value=1.2e-28  Score=193.12  Aligned_cols=153  Identities=13%  Similarity=0.152  Sum_probs=120.4

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      +.+|+..++.+ +||  ||+++++++.     +...++||||+ +++|.+++.... +.+++..+..++.|++.||.|||
T Consensus        62 ~~~e~~~l~~l-~h~--~iv~~~~~~~-----~~~~~~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~lH  132 (325)
T 3kex_A           62 VTDHMLAIGSL-DHA--HIVRLLGLCP-----GSSLQLVTQYLPLGSLLDHVRQHR-GALGPQLLLNWGVQIAKGMYYLE  132 (325)
T ss_dssp             CCHHHHHHHTC-CCT--TBCCEEEEEC-----BSSEEEEEECCTTCBSHHHHHSSG-GGSCTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcC-CCC--CcCeEEEEEc-----CCccEEEEEeCCCCCHHHHHHHcc-ccCCHHHHHHHHHHHHHHHHHHH
Confidence            34677777777 455  9999999886     34688999999 899999987642 45899999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC---CCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ---QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~---~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      +. |++||||||+|||++.++.  +||+|||.++........   ....++..|+|||.+....      ++.++|+||+
T Consensus       133 ~~-~ivH~Dikp~Nil~~~~~~--~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~------~~~~~Di~sl  203 (325)
T 3kex_A          133 EH-GMVHRNLAARNVLLKSPSQ--VQVADFGVADLLPPDDKQLLYSEAKTPIKWMALESIHFGK------YTHQSDVWSY  203 (325)
T ss_dssp             HT-TCCCSCCSSTTEEESSSSC--EEECSCSGGGGSCCCTTCCC-----CCTTTSCHHHHHHCC------CCHHHHHHHH
T ss_pred             hC-CCCCCccchheEEECCCCe--EEECCCCcccccCcccccccccCCCCcccccChHHhccCC------CChhhHhHHh
Confidence            96 9999999999999988776  999999999886543222   2346777899999998443      7789999999


Q ss_pred             HHHHHHHHHHHHHHh-cCCCCC
Q psy320          162 KMYTTFCEILEQCRL-NHQDFR  182 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~-~~~~~~  182 (202)
                      |+..+      .+.. |..+|.
T Consensus       204 G~~l~------el~~~g~~p~~  219 (325)
T 3kex_A          204 GVTVW------ELMTFGAEPYA  219 (325)
T ss_dssp             HHHHH------HHHTTSCCTTT
T ss_pred             HHHHH------HHHhCCCCCcc
Confidence            87322      4444 666664

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.96  E-value=2.4e-28  Score=189.15  Aligned_cols=145  Identities=16%  Similarity=0.207  Sum_probs=119.1

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ....+|+++++.+ +||  ||+++++++...+  ....++||||+ +++|.+++.... +.+++..+..++.|++.||.|
T Consensus        68 ~~~~~E~~~l~~l-~h~--~i~~~~~~~~~~~--~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~  141 (302)
T 4e5w_A           68 ADLKKEIEILRNL-YHE--NIVKYKGICTEDG--GNGIKLIMEFLPSGSLKEYLPKNK-NKINLKQQLKYAVQICKGMDY  141 (302)
T ss_dssp             HHHHHHHHHHHTC-CCT--TBCCEEEEEEC-----CCEEEEEECCTTCBHHHHHHHHT-TTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CeeeeeeEEecCC--CceEEEEEEeCCCCcHHHHHHhcc-ccCCHHHHHHHHHHHHHHHHH
Confidence            3456788888888 455  9999999998422  35689999999 889999996654 459999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC----CCCCCCCccchhhHHHHhhhhccCCCCCCCcch
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD----QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDP  158 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~----~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Di  158 (202)
                      ||+. |++|+||||+||+++.++.  ++|+|||.+........    .....++..|+|||.+....      ++.++|+
T Consensus       142 lH~~-~i~H~dikp~Nil~~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~------~~~~~Di  212 (302)
T 4e5w_A          142 LGSR-QYVHRDLAARNVLVESEHQ--VKIGDFGLTKAIETDKEYYTVKDDRDSPVFWYAPECLMQSK------FYIASDV  212 (302)
T ss_dssp             HHHT-TEECSCCSGGGEEEEETTE--EEECCCTTCEECCTTCCEEECCCCTTCCGGGCCHHHHHHCE------EEHHHHH
T ss_pred             hhcC-CcccCCCchheEEEcCCCC--EEECcccccccccCCCcceeccCCCCCCccccCCeeecCCC------CCcchhH
Confidence            9996 9999999999999998876  99999999987654321    22456788899999998544      6678999


Q ss_pred             hhHHH
Q psy320          159 TSIKM  163 (202)
Q Consensus       159 wsl~~  163 (202)
                      ||+|+
T Consensus       213 ~slG~  217 (302)
T 4e5w_A          213 WSFGV  217 (302)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99975

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.96  E-value=8.9e-29  Score=196.33  Aligned_cols=155  Identities=17%  Similarity=0.222  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++.+ +  ||||+++++++.    .+...|+||||+ +++|.+++....  .+++..+..++.|++.||.||
T Consensus        77 ~~~~E~~~l~~l-~--h~~iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~~i~~~l~~l  147 (360)
T 3eqc_A           77 QIIRELQVLHEC-N--SPYIVGFYGAFY----SDGEISICMEHMDGGSLDQVLKKAG--RIPEQILGKVSIAVIKGLTYL  147 (360)
T ss_dssp             HHHHHHGGGGGC-C--CTTBCCEEEEEE----ETTEEEEEECCCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHC-C--CCCEEEEeEEEE----ECCEEEEEEECCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHH
Confidence            345677777666 4  459999999998    456899999999 889999998764  499999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |+++|++|+||||+||+++.++.  ++|+|||.+...... ......+++.|+|||.+..      ..++.++|+||+|+
T Consensus       148 h~~~~i~H~dlkp~Nil~~~~~~--~kl~Dfg~~~~~~~~-~~~~~~gt~~y~aPE~~~~------~~~~~~~Di~slG~  218 (360)
T 3eqc_A          148 REKHKIMHRDVKPSNILVNSRGE--IKLCDFGVSGQLIDS-MANSFVGTRSYMSPERLQG------THYSVQSDIWSMGL  218 (360)
T ss_dssp             HHHHCCCCSCCSGGGEEECTTCC--EEECCCCCCHHHHHH-C----CCCCTTCCHHHHTT------CCCSHHHHHHHHHH
T ss_pred             HHhCCEEcCCccHHHEEECCCCC--EEEEECCCCcccccc-cccCCCCCCCeECHHHHcC------CCCCchhhHHHHHH
Confidence            98448999999999999998877  999999999765432 2234578999999999973      34778999999997


Q ss_pred             HHHHHHHHHHHHhcCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~  183 (202)
                      .      +..+..|..+|..
T Consensus       219 i------l~~l~~g~~pf~~  232 (360)
T 3eqc_A          219 S------LVEMAVGRYPIPP  232 (360)
T ss_dssp             H------HHHHHHTSCCSSC
T ss_pred             H------HHHHHhCCCCCCC
Confidence            3      3355668878764

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.96  E-value=4.5e-28  Score=190.61  Aligned_cols=143  Identities=12%  Similarity=0.133  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+++++++ +|  |||+++++++.    .....++||||+ +++|.+++.... +.+++..+..++.|++.||.||
T Consensus        92 ~~~~E~~~l~~l-~h--~~iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~L  163 (333)
T 1mqb_A           92 DFLGEAGIMGQF-SH--HNIIRLEGVIS----KYKPMMIITEYMENGALDKFLREKD-GEFSVLQLVGMLRGIAAGMKYL  163 (333)
T ss_dssp             HHHHHHHHHHTC-CC--TTBCCEEEEEC----SSSSEEEEEECCTTEEHHHHHHHTT-TCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CC--CCCCcEEEEEe----cCCCcEEEEeCCCCCcHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHH
Confidence            345677777777 44  49999999998    567899999999 889999997653 4599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC----CCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ----QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~----~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      |+. |++|+||||+||+++.++.  +||+|||.++........    ....++..|+|||.+..      ..++.++|+|
T Consensus       164 H~~-~ivH~Dikp~NIl~~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~Di~  234 (333)
T 1mqb_A          164 ANM-NYVHRDLAARNILVNSNLV--CKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISY------RKFTSASDVW  234 (333)
T ss_dssp             HHT-TCCCSCCCGGGEEECTTCC--EEECCCCC-----------------CCCGGGSCHHHHHS------CCCCHHHHHH
T ss_pred             HhC-CeeCCCCChheEEECCCCc--EEECCCCcchhhccccccccccCCCCccccccCchhccc------CCCCchhhhH
Confidence            996 9999999999999998776  999999999876532211    12345778999999973      3477799999


Q ss_pred             hHHHH
Q psy320          160 SIKMY  164 (202)
Q Consensus       160 sl~~~  164 (202)
                      |+|+.
T Consensus       235 slG~i  239 (333)
T 1mqb_A          235 SFGIV  239 (333)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99863

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.96  E-value=3.4e-28  Score=188.13  Aligned_cols=144  Identities=13%  Similarity=0.129  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+++++++ +||  ||+++++++..   .....++||||+ +++|.+++.... ..+++..+..++.|++.||.||
T Consensus        72 ~~~~E~~~l~~l-~h~--~iv~~~~~~~~---~~~~~~~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~ql~~~l~~l  144 (298)
T 3f66_A           72 QFLTEGIIMKDF-SHP--NVLSLLGICLR---SEGSPLVVLPYMKHGDLRNFIRNET-HNPTVKDLIGFGLQVAKGMKYL  144 (298)
T ss_dssp             HHHHHHHHHHTC-CCT--TBCCCCEEECC---SSSCCEEEEECCTTCBHHHHHHCTT-CCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCC--CEeeeeeEEEc---CCCceEEEEeCCCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHH
Confidence            345778877777 454  99999999653   455789999999 889999997543 4589999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC-----CCCCCCCccchhhHHHHhhhhccCCCCCCCcch
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD-----QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDP  158 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~-----~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Di  158 (202)
                      |+. |++|+||||+||+++.++.  ++|+|||.+........     .....+++.|+|||.+....      ++.++|+
T Consensus       145 H~~-~i~H~dikp~Nil~~~~~~--~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~------~~~~~Di  215 (298)
T 3f66_A          145 ASK-KFVHRDLAARNCMLDEKFT--VKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQK------FTTKSDV  215 (298)
T ss_dssp             HHT-TCCCSCCSGGGEEECTTCC--EEECSCGGGCCCSCGGGCBC-----CCBCGGGSCHHHHHHCC------CCHHHHH
T ss_pred             HhC-CccCCCCchheEEECCCCC--EEECcccccccccccchhccccccCCCCCccccChHHhcCCC------CChHHHH
Confidence            996 9999999999999988776  99999999987643221     12346778899999997433      7789999


Q ss_pred             hhHHHH
Q psy320          159 TSIKMY  164 (202)
Q Consensus       159 wsl~~~  164 (202)
                      ||+|+.
T Consensus       216 ~slG~i  221 (298)
T 3f66_A          216 WSFGVL  221 (298)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999873

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.96  E-value=9.6e-28  Score=188.19  Aligned_cols=162  Identities=22%  Similarity=0.334  Sum_probs=130.0

Q ss_pred             hHHHHHHHHHHHHhcC---CCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKH---PSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGL   80 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~---~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l   80 (202)
                      ....+|+++++.++..   .|++|++++++|.    .....|+||||++++|.+++.......+++..+..++.|++.||
T Consensus        56 ~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~----~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l  131 (339)
T 1z57_A           56 EAARSEIQVLEHLNTTDPNSTFRCVQMLEWFE----HHGHICIVFELLGLSTYDFIKENGFLPFRLDHIRKMAYQICKSV  131 (339)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEE----ETTEEEEEEECCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhcCCCCceeeEeeecccc----cCCcEEEEEcCCCCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHH
Confidence            3456788888888521   1457999999998    45699999999999999999887655699999999999999999


Q ss_pred             HHHHhhCCccccCCCCCceeeecCC-----------------cceeEEeecccccccccccCCCCCCCCccchhhHHHHh
Q psy320           81 NHLHTKHNLVHTSIKPESIFFKADH-----------------VYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQ  143 (202)
Q Consensus        81 ~~lh~~~~ivH~dl~p~nil~~~~~-----------------~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~  143 (202)
                      .|||+. |++||||||+|||++.++                 ...++|+|||.++....  ......+++.|+|||.+..
T Consensus       132 ~~lH~~-~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~  208 (339)
T 1z57_A          132 NFLHSN-KLTHTDLKPENILFVQSDYTEAYNPKIKRDERTLINPDIKVVDFGSATYDDE--HHSTLVSTRHYRAPEVILA  208 (339)
T ss_dssp             HHHHHT-TEECCCCCGGGEEESCCCEEEEEC----CEEEEESCCCEEECCCSSCEETTS--CCCSSCSCGGGCCHHHHTT
T ss_pred             HHHHHC-CCcCCCCCHHHEEEeccccccccCCccccccccccCCCceEeeCcccccCcc--ccccccCCccccChHHhhC
Confidence            999996 999999999999998743                 22499999999987532  2234578999999999973


Q ss_pred             hhhccCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCCC
Q psy320          144 CRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       144 ~~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                            ..++.++|+||+|+.      +-.+..|.++|...
T Consensus       209 ------~~~~~~~Di~slG~i------l~el~~g~~pf~~~  237 (339)
T 1z57_A          209 ------LGWSQPCDVWSIGCI------LIEYYLGFTVFPTH  237 (339)
T ss_dssp             ------SCCCTHHHHHHHHHH------HHHHHHSSCSCCCS
T ss_pred             ------CCCCcchhhHHHHHH------HHHHHhCCCCCCCC
Confidence                  347889999999873      22455587777643

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.96  E-value=8.4e-29  Score=191.35  Aligned_cols=145  Identities=14%  Similarity=0.173  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+++++++ +||  ||+++++++...  +....++||||+ +++|.+++.... .++++..+..++.|++.||.||
T Consensus        57 ~~~~E~~~l~~l-~h~--~iv~~~~~~~~~--~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~l  130 (295)
T 3ugc_A           57 DFEREIEILKSL-QHD--NIVKYKGVCYSA--GRRNLKLIMEYLPYGSLRDYLQKHK-ERIDHIKLLQYTSQICKGMEYL  130 (295)
T ss_dssp             HHHHHHHHHHTC-CCT--TBCCEEEEECHH--HHTSCEEEEECCTTCBHHHHHHHCG-GGCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCC--CEeeEEEEEecC--CCCceEEEEEeCCCCCHHHHHHhcc-cccCHHHHHHHHHHHHHHHHHH
Confidence            456788888888 455  999999998632  234689999999 899999997754 3599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC----CCCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD----QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~----~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      |+. |++|+||||+||+++.++.  ++|+|||.+........    .....++..|+|||.+....      ++.++|+|
T Consensus       131 H~~-~ivH~Dikp~Nil~~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~------~~~~~Di~  201 (295)
T 3ugc_A          131 GTK-RYIHRDLATRNILVENENR--VKIGDFGLTKVLPQDKEFFKVKEPGESPIFWYAPESLTESK------FSVASDVW  201 (295)
T ss_dssp             HHT-TCCCSCCSGGGEEEEETTE--EEECCCCSCC-------------CTTCGGGGCCHHHHHHCC------CCHHHHHH
T ss_pred             hcC-CcccCCCCHhhEEEcCCCe--EEEccCcccccccCCcceeeeccCCCCccceeCcHHhcCCC------CChHHHHH
Confidence            996 9999999999999998876  99999999987654321    12345667799999998443      77899999


Q ss_pred             hHHHH
Q psy320          160 SIKMY  164 (202)
Q Consensus       160 sl~~~  164 (202)
                      |+|+.
T Consensus       202 slG~~  206 (295)
T 3ugc_A          202 SFGVV  206 (295)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99763

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.95  E-value=6.1e-28  Score=185.30  Aligned_cols=154  Identities=15%  Similarity=0.141  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|++.++.+ +||  ||+++++++.     ....++||||+ +++|.+++.... +.+++..+..++.|++.||.||
T Consensus        59 ~~~~E~~~l~~l-~h~--~i~~~~~~~~-----~~~~~~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~l  129 (281)
T 3cc6_A           59 KFMSEAVIMKNL-DHP--HIVKLIGIIE-----EEPTWIIMELYPYGELGHYLERNK-NSLKVLTLVLYSLQICKAMAYL  129 (281)
T ss_dssp             HHHHHHHHHHHH-CCT--TBCCEEEEEC-----SSSCEEEEECCTTCBHHHHHHHHT-TTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCC--CcceEEEEEc-----CCCCEEEEecCCCCCHHHHHHhcc-ccCCHHHHHHHHHHHHHHHHHH
Confidence            456789999999 555  9999999986     23468999999 899999997754 4599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC--CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD--QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~--~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      |+. |++|+||||+||+++.++.  ++|+|||.+........  .....+++.|+|||.+...      .++.++|+||+
T Consensus       130 H~~-~i~H~dlkp~Nil~~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~------~~~~~~Di~sl  200 (281)
T 3cc6_A          130 ESI-NCVHRDIAVRNILVASPEC--VKLGDFGLSRYIEDEDYYKASVTRLPIKWMSPESINFR------RFTTASDVWMF  200 (281)
T ss_dssp             HHT-TCCCCCCSGGGEEEEETTE--EEECCCCGGGCC---------CCCCCGGGCCHHHHHHC------CCCHHHHHHHH
T ss_pred             HHC-CcccCCCccceEEECCCCc--EEeCccCCCcccccccccccccCCCCcceeCchhhccC------CCCchhccHHH
Confidence            996 9999999999999998876  99999999987654322  1234567889999999743      37779999999


Q ss_pred             HHHHHHHHHHHHHHh-cCCCCC
Q psy320          162 KMYTTFCEILEQCRL-NHQDFR  182 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~-~~~~~~  182 (202)
                      |+..      ..+.. |..+|.
T Consensus       201 G~il------~~llt~g~~p~~  216 (281)
T 3cc6_A          201 AVCM------WEILSFGKQPFF  216 (281)
T ss_dssp             HHHH------HHHHTTTCCTTT
T ss_pred             HHHH------HHHHhCCCCCcc
Confidence            8732      24554 777764

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.95  E-value=2.6e-28  Score=206.68  Aligned_cols=142  Identities=12%  Similarity=0.174  Sum_probs=115.5

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +.+.+|+++++++ +||  ||+++++++.    . ...++||||+ +++|.+++...  +.+++..+..++.|++.||.|
T Consensus       415 ~~~~~E~~il~~l-~hp--nIv~l~~~~~----~-~~~~lv~E~~~~g~L~~~l~~~--~~l~~~~~~~i~~qi~~~L~y  484 (635)
T 4fl3_A          415 DELLAEANVMQQL-DNP--YIVRMIGICE----A-ESWMLVMEMAELGPLNKYLQQN--RHVKDKNIIELVHQVSMGMKY  484 (635)
T ss_dssp             HHHHHHHHHHHHC-CCT--TBCCEEEEEE----S-SSEEEEEECCTTEEHHHHHHHC--TTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CEeeEEEEEe----c-CCEEEEEEccCCCCHHHHHhhC--CCCCHHHHHHHHHHHHHHHHH
Confidence            4567899999999 455  9999999986    2 3478999999 99999999765  459999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC----CCCCCCCccchhhHHHHhhhhccCCCCCCCcch
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD----QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDP  158 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~----~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Di  158 (202)
                      ||++ ||+||||||+|||++.++.  +||+|||+++.......    .....+++.|+|||.+....      ++.++|+
T Consensus       485 LH~~-~iiHrDLkp~NILl~~~~~--~kL~DFGla~~~~~~~~~~~~~~~~~~t~~y~APE~~~~~~------~~~~sDv  555 (635)
T 4fl3_A          485 LEES-NFVHRDLAARNVLLVTQHY--AKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYK------FSSKSDV  555 (635)
T ss_dssp             HHHT-TCCCSCCSGGGEEEEETTE--EEECCTTHHHHTTC-------------CGGGSCHHHHHHCC------CCHHHHH
T ss_pred             HHHC-CEeCCCCChHhEEEeCCCC--EEEEEcCCccccccCccccccccCCCCceeeeChhhhcCCC------CCcHHHH
Confidence            9996 9999999999999998876  99999999987643221    11235677899999997433      7889999


Q ss_pred             hhHHHH
Q psy320          159 TSIKMY  164 (202)
Q Consensus       159 wsl~~~  164 (202)
                      ||+|+.
T Consensus       556 wSlGv~  561 (635)
T 4fl3_A          556 WSFGVL  561 (635)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999863

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.95  E-value=3.3e-28  Score=190.94  Aligned_cols=156  Identities=14%  Similarity=0.146  Sum_probs=118.5

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ....+|+++++.+ +  ||||+++++++.    .+ ..++|++++ +++|.+++.... +.+++..++.++.|++.||.|
T Consensus        62 ~~~~~E~~~l~~l-~--hp~iv~~~~~~~----~~-~~~~v~~~~~~g~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~  132 (327)
T 3lzb_A           62 KEILDEAYVMASV-D--NPHVCRLLGICL----TS-TVQLITQLMPFGCLLDYVREHK-DNIGSQYLLNWCVQIAKGMNY  132 (327)
T ss_dssp             HHHHHHHHHHTTC-C--BTTBCCCCEEEE----SS-SEEEEECCCSSCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-C--CCCeeEEEEEEe----cC-CceEEEEecCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHH
Confidence            3456788888777 4  459999999998    33 377899999 999999997754 459999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC---CCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ---SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~---~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      ||+. |++||||||+|||++.++.  ++|+|||.++.........   ...+++.|+|||.+...      .++.++|+|
T Consensus       133 LH~~-~ivH~Dikp~NIl~~~~~~--~kL~DfG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~------~~~~~~Di~  203 (327)
T 3lzb_A          133 LEDR-RLVHRDLAARNVLVKTPQH--VKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHR------IYTHQSDVW  203 (327)
T ss_dssp             HHHT-TCCCSCCCGGGEEEEETTE--EEECCTTC----------------CCCGGGSCHHHHHHC------CCCHHHHHH
T ss_pred             HhhC-CCcCCCCCHHHEEEcCCCC--EEEccCcceeEccCccccccccCCCccccccCHHHHcCC------CCChHHHHH
Confidence            9996 9999999999999998876  9999999998764432221   34567789999999843      378899999


Q ss_pred             hHHHHHHHHHHHHHHHh-cCCCCCC
Q psy320          160 SIKMYTTFCEILEQCRL-NHQDFRP  183 (202)
Q Consensus       160 sl~~~~~~~~~~~~~~~-~~~~~~~  183 (202)
                      |+|+..+      .+.. |.++|..
T Consensus       204 slG~il~------ell~~g~~p~~~  222 (327)
T 3lzb_A          204 SYGVTVW------ELMTFGSKPYDG  222 (327)
T ss_dssp             HHHHHHH------HHHTTSCCTTTT
T ss_pred             HHHHHHH------HHHHCCCCCCCC
Confidence            9987322      4444 7777754

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.95  E-value=4.1e-28  Score=190.27  Aligned_cols=164  Identities=15%  Similarity=0.220  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEec----CCceEEEEEEccccccHHHHHHHc-CCCCCCHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTG----INGTHVCTVTEIMAECLCNYMIRQ-KFQPAPLVVAKIIVNQILEG   79 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~----~~~~~~~lv~e~~~~sL~~~~~~~-~~~~~~~~~~~~~~~qi~~~   79 (202)
                      ...+|+..++++.+||  ||+++++++....    ......++||||++++|.+++... ..+.+++..++.++.|++.|
T Consensus        71 ~~~~e~~~l~~l~~h~--~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~  148 (337)
T 3ll6_A           71 AIIQEVCFMKKLSGHP--NIVQFCSAASIGKEESDTGQAEFLLLTELCKGQLVEFLKKMESRGPLSCDTVLKIFYQTCRA  148 (337)
T ss_dssp             HHHHHHHHHHHHTTST--TBCCEEEEEEECTTTSTTSSEEEEEEEECCSEEHHHHHHHHHTTCSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCC--ChhhccccccccccccccCCceEEEEEEecCCCHHHHHHHhhccCCCCHHHHHHHHHHHHHH
Confidence            4567888888886566  9999999996432    245689999999998999988752 23569999999999999999


Q ss_pred             HHHHHhhCC--ccccCCCCCceeeecCCcceeEEeecccccccccccCC-------------CCCCCCccchhhHHHHhh
Q psy320           80 LNHLHTKHN--LVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ-------------QSSSKTKSKIFCEILEQC  144 (202)
Q Consensus        80 l~~lh~~~~--ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~-------------~~~~~~~~~~ape~~~~~  144 (202)
                      |.|||+. |  ++|+||||+|||++.++.  +||+|||.+.........             ....+++.|+|||.+...
T Consensus       149 l~~LH~~-~~~ivH~Dikp~NIl~~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~  225 (337)
T 3ll6_A          149 VQHMHRQ-KPPIIHRDLKVENLLLSNQGT--IKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLY  225 (337)
T ss_dssp             HHHHHTS-SSCCBCCCCCGGGCEECTTSC--EEBCCCTTCBCCSSCC-------------------------------CC
T ss_pred             HHHHHhC-CCCEEEccCCcccEEECCCCC--EEEecCccceeccccCcccccccccccchhhccccCCCCcCChhhhhcc
Confidence            9999996 9  999999999999998876  999999999876532211             134588899999998422


Q ss_pred             hhccCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCCCC
Q psy320          145 RLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       145 ~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      .   ...++.++|+||+|+..+      .+..|..+|.
T Consensus       226 ~---~~~~~~~~Dv~slG~il~------el~~g~~p~~  254 (337)
T 3ll6_A          226 S---NFPIGEKQDIWALGCILY------LLCFRQHPFE  254 (337)
T ss_dssp             T---TSCSSHHHHHHHHHHHHH------HHHHSSCCC-
T ss_pred             c---cCCCChHHhHHHHHHHHH------HHHhCCCCCc
Confidence            1   344677999999986332      4445666654

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.95  E-value=1.5e-28  Score=192.47  Aligned_cols=156  Identities=15%  Similarity=0.141  Sum_probs=127.0

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK--FQPAPLVVAKIIVNQILEGLN   81 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~--~~~~~~~~~~~~~~qi~~~l~   81 (202)
                      .+.+|+++++.+ +  ||||+++++++.    .....++||||+ +++|.+++....  ...+++..+..++.|++.||.
T Consensus        73 ~~~~e~~~l~~l-~--h~~iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~  145 (326)
T 3uim_A           73 QFQTEVEMISMA-V--HRNLLRLRGFCM----TPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLA  145 (326)
T ss_dssp             HHHHHHHGGGTC-C--CTTBCCCCEEEC----CSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc-c--CCCccceEEEEe----cCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHH
Confidence            456777777777 4  459999999998    566889999999 889999998654  234999999999999999999


Q ss_pred             HHHhhC---CccccCCCCCceeeecCCcceeEEeecccccccccccC--CCCCCCCccchhhHHHHhhhhccCCCCCCCc
Q psy320           82 HLHTKH---NLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD--QQSSSKTKSKIFCEILEQCRLNQDFRLDPRV  156 (202)
Q Consensus        82 ~lh~~~---~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~--~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~  156 (202)
                      |||+ .   |++|+||||+|||++.++.  ++|+|||.+........  .....+++.|+|||.+....      ++.++
T Consensus       146 ~lH~-~~~~~ivH~Dlkp~Nil~~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~------~~~~~  216 (326)
T 3uim_A          146 YLHD-HCDPKIIHRDVKAANILLDEEFE--AVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGK------SSEKT  216 (326)
T ss_dssp             HHHH-SSSSCEECCCCSGGGEEECTTCC--EEECCCSSCEECCSSSSCEECCCCSCGGGCCHHHHHHSE------ECHHH
T ss_pred             HHHh-CCCCCeEeCCCchhhEEECCCCC--EEeccCccccccCcccccccccccCCcCccCHHHhccCC------CCccc
Confidence            9999 6   9999999999999998876  99999999987643222  22346899999999997443      67799


Q ss_pred             chhhHHHHHHHHHHHHHHHhcCCCCC
Q psy320          157 DPTSIKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       157 Diwsl~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      |+||+|+.      +-.+..|.++|.
T Consensus       217 Di~slG~i------l~~l~~g~~pf~  236 (326)
T 3uim_A          217 DVFGYGVM------LLELITGQRAFD  236 (326)
T ss_dssp             HHHHHHHH------HHHHHHCCCSBC
T ss_pred             cchhHHHH------HHHHHhCCCccc
Confidence            99999973      335566888874

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.95  E-value=8.8e-28  Score=187.99  Aligned_cols=167  Identities=16%  Similarity=0.184  Sum_probs=123.7

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecC--CceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGI--NGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGL   80 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~--~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l   80 (202)
                      ....+|++.++++.+||  ||+++++++.....  .....++||||+ +++|.+++.......+++..+..++.|++.||
T Consensus        65 ~~~~~e~~~l~~l~~h~--~i~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l  142 (326)
T 2x7f_A           65 EEIKQEINMLKKYSHHR--NIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGL  142 (326)
T ss_dssp             HHHHHHHHHHHHHCCST--TBCCEEEEEEECC--CCCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCC--CeeeeeeEEeeccCccccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHH
Confidence            45668899999985555  99999999986321  146899999999 88999999875445699999999999999999


Q ss_pred             HHHHhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           81 NHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        81 ~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      .|||+. |++|+||||+||+++.++.  ++|+|||.+....... ......+++.|+|||.+.... .....++.++|+|
T Consensus       143 ~~lH~~-~ivH~dlkp~NIl~~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-~~~~~~~~~~Di~  218 (326)
T 2x7f_A          143 SHLHQH-KVIHRDIKGQNVLLTENAE--VKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDE-NPDATYDFKSDLW  218 (326)
T ss_dssp             HHHHHT-TCCCCCCSGGGEEECTTCC--EEECCCTTTC-------------CCGGGCCHHHHC---------CCTTHHHH
T ss_pred             HHHHHC-CccccCCcHHHEEEcCCCC--EEEeeCcCceecCcCccccccccCCccccChhhhcccc-ccCcCCCccchHH
Confidence            999996 9999999999999988776  9999999998764322 223457899999999986322 1123467899999


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCC
Q psy320          160 SIKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       160 sl~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      |+|+..+      .+..|.++|.
T Consensus       219 slG~il~------~l~~g~~p~~  235 (326)
T 2x7f_A          219 SLGITAI------EMAEGAPPLC  235 (326)
T ss_dssp             HHHHHHH------HHHHSSCTTT
T ss_pred             HHHHHHH------HHHhCCCCCC
Confidence            9987332      4455766664

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.95  E-value=1e-28  Score=201.91  Aligned_cols=156  Identities=15%  Similarity=0.191  Sum_probs=123.9

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +.+.+|+++++.+ +||  ||+++++++.     ....|+||||+ +++|.+++.......+++..+..++.|++.||.|
T Consensus       228 ~~~~~E~~~l~~l-~h~--~iv~l~~~~~-----~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~  299 (454)
T 1qcf_A          228 EAFLAEANVMKTL-QHD--KLVKLHAVVT-----KEPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAF  299 (454)
T ss_dssp             HHHHHHHHHHTTC-CCT--TBCCEEEEEC-----SSSCEEEECCCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhC-CCC--CEeeEEEEEe-----CCccEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHH
Confidence            4567888888888 455  9999999986     33689999999 8999999975433358999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc--CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH--DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~--~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      ||++ |++||||||+|||++.++.  +||+|||+++......  ......++..|+|||.+....      ++.++|+||
T Consensus       300 LH~~-~ivHrDlkp~Nill~~~~~--~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~------~~~~~Dvws  370 (454)
T 1qcf_A          300 IEQR-NYIHRDLRAANILVSASLV--CKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGS------FTIKSDVWS  370 (454)
T ss_dssp             HHHT-TCCCSSCSGGGEEECTTCC--EEECSTTGGGGBCCHHHHTTCSSSSCGGGSCHHHHHHCC------CCHHHHHHH
T ss_pred             HHhC-CccCCCCCHHHEEECCCCc--EEEeeCCCceEcCCCceeccCCCcccccccCHHHhccCC------CCcHHHHHh
Confidence            9996 9999999999999998776  9999999998764321  122345677899999998443      778999999


Q ss_pred             HHHHHHHHHHHHHHHh-cCCCCC
Q psy320          161 IKMYTTFCEILEQCRL-NHQDFR  182 (202)
Q Consensus       161 l~~~~~~~~~~~~~~~-~~~~~~  182 (202)
                      +|+..+      .+.. |..+|.
T Consensus       371 lG~~l~------el~t~g~~P~~  387 (454)
T 1qcf_A          371 FGILLM------EIVTYGRIPYP  387 (454)
T ss_dssp             HHHHHH------HHHTTSCCSST
T ss_pred             HHHHHH------HHHhCCCCCCC
Confidence            986322      3333 666654

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.95  E-value=3.4e-28  Score=190.18  Aligned_cols=161  Identities=12%  Similarity=0.101  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCC--ceEEEEEEccc-cccHHHHHHHcCC----CCCCHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGIN--GTHVCTVTEIM-AECLCNYMIRQKF----QPAPLVVAKIIVNQIL   77 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~--~~~~~lv~e~~-~~sL~~~~~~~~~----~~~~~~~~~~~~~qi~   77 (202)
                      .+.+|+++++++ +||  ||+++++++......  ....++||||+ +++|.+++.....    ..+++..+..++.|++
T Consensus        71 ~~~~E~~~l~~l-~h~--~iv~~~~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~  147 (323)
T 3qup_A           71 EFLREAACMKEF-DHP--HVAKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIA  147 (323)
T ss_dssp             HHHHHHHHHTTC-CCT--TBCCCCEEEECC-------CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHC-CCC--ceehhhceeeccccccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHH
Confidence            345677777777 455  999999999842211  11349999999 8899999875431    1489999999999999


Q ss_pred             HHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC---CCCCCCccchhhHHHHhhhhccCCCCCC
Q psy320           78 EGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ---QSSSKTKSKIFCEILEQCRLNQDFRLDP  154 (202)
Q Consensus        78 ~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~---~~~~~~~~~~ape~~~~~~~~~~~~~~~  154 (202)
                      .||.|||+. |++||||||+||+++.++.  +||+|||.++........   ....+++.|+|||.+....      ++.
T Consensus       148 ~al~~LH~~-~ivH~Dikp~NIli~~~~~--~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~------~~~  218 (323)
T 3qup_A          148 CGMEYLSSR-NFIHRDLAARNCMLAEDMT--VCVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNL------YTV  218 (323)
T ss_dssp             HHHHHHHHT-TCCCSCCSGGGEEECTTSC--EEECCCCC-----------------CCGGGCCHHHHHHCC------CCH
T ss_pred             HHHHHHHcC-CcccCCCCcceEEEcCCCC--EEEeeccccccccccccccccccccCcccccCchhhcCCC------CCC
Confidence            999999996 9999999999999998876  999999999876443221   1345677899999998433      778


Q ss_pred             CcchhhHHHHHHHHHHHHHHHh-cCCCCCC
Q psy320          155 RVDPTSIKMYTTFCEILEQCRL-NHQDFRP  183 (202)
Q Consensus       155 ~~Diwsl~~~~~~~~~~~~~~~-~~~~~~~  183 (202)
                      ++|+||+|+..+      .+.. |.++|..
T Consensus       219 ~~Di~slG~il~------ell~~g~~p~~~  242 (323)
T 3qup_A          219 HSDVWAFGVTMW------EIMTRGQTPYAG  242 (323)
T ss_dssp             HHHHHHHHHHHH------HHHTTSCCTTTT
T ss_pred             ccchhhHHHHHH------HHHhCCCCCccc
Confidence            999999987322      4444 7777754

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.95  E-value=5e-28  Score=190.25  Aligned_cols=145  Identities=13%  Similarity=0.156  Sum_probs=119.9

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCC--------------CCCCHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKF--------------QPAPLVVA   69 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~--------------~~~~~~~~   69 (202)
                      ...+|+++++++.+||  ||+++++++.    .....++||||+ +++|.+++.....              ..+++..+
T Consensus        86 ~~~~E~~~l~~l~~hp--~iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (334)
T 2pvf_A           86 DLVSEMEMMKMIGKHK--NIINLLGACT----QDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDL  159 (334)
T ss_dssp             HHHHHHHHHHHHCCCT--TBCCEEEEEC----SSSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHH
T ss_pred             HHHHHHHHHHHhhcCC--CEeeEEEEEc----cCCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHH
Confidence            3567889999985566  9999999998    566899999999 8899999976531              24899999


Q ss_pred             HHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC---CCCCCCCccchhhHHHHhhhh
Q psy320           70 KIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD---QQSSSKTKSKIFCEILEQCRL  146 (202)
Q Consensus        70 ~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~ape~~~~~~~  146 (202)
                      ..++.|++.||.|||+. |++|+||||+||+++.++.  +||+|||.++.......   .....+++.|+|||.+.... 
T Consensus       160 ~~i~~qi~~aL~~LH~~-~ivH~Dlkp~NIll~~~~~--~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-  235 (334)
T 2pvf_A          160 VSCTYQLARGMEYLASQ-KCIHRDLAARNVLVTENNV--MKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRV-  235 (334)
T ss_dssp             HHHHHHHHHHHHHHHHT-TEECSCCSGGGEEECTTCC--EEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCE-
T ss_pred             HHHHHHHHHHHHHHHhC-CeeCCCCccceEEEcCCCC--EEEccccccccccccccccccCCCCcccceeChHHhcCCC-
Confidence            99999999999999996 9999999999999988776  99999999987653221   22345678899999997433 


Q ss_pred             ccCCCCCCCcchhhHHHH
Q psy320          147 NQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus       147 ~~~~~~~~~~Diwsl~~~  164 (202)
                           ++.++|+||+|+.
T Consensus       236 -----~~~~~Di~slG~i  248 (334)
T 2pvf_A          236 -----YTHQSDVWSFGVL  248 (334)
T ss_dssp             -----ECHHHHHHHHHHH
T ss_pred             -----cChHHHHHHHHHH
Confidence                 6779999999863

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.95  E-value=3.4e-27  Score=186.97  Aligned_cols=164  Identities=19%  Similarity=0.283  Sum_probs=126.6

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecC---CceEEEEEEccccccHHHHHHH--cCCCCCCHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGI---NGTHVCTVTEIMAECLCNYMIR--QKFQPAPLVVAKIIVNQILE   78 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~---~~~~~~lv~e~~~~sL~~~~~~--~~~~~~~~~~~~~~~~qi~~   78 (202)
                      ..+.+|++.+..+ +||  ||++++++|...+.   .....++||||+.++|.+.+..  .....+++..++.++.|++.
T Consensus        64 ~~~~~~~~~l~~l-~h~--niv~~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~  140 (360)
T 3e3p_A           64 NRELQIMQDLAVL-HHP--NIVQLQSYFYTLGERDRRDIYLNVVMEYVPDTLHRCCRNYYRRQVAPPPILIKVFLFQLIR  140 (360)
T ss_dssp             CHHHHHHHHHHHH-CCT--TBCCEEEEEEEECSSCTTCEEEEEEEECCSCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc-CCC--CcccHHHhhhccccccccceeEEEEeecccccHHHHHHHHhhcccCCCHHHHHHHHHHHHH
Confidence            3455666666666 455  99999999986442   2346899999997777665543  22356899999999999999


Q ss_pred             HHHHHH--hhCCccccCCCCCceeeec-CCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCC
Q psy320           79 GLNHLH--TKHNLVHTSIKPESIFFKA-DHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPR  155 (202)
Q Consensus        79 ~l~~lh--~~~~ivH~dl~p~nil~~~-~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~  155 (202)
                      ||.|||  +. |++||||||+|||++. ++.  +||+|||.++............+++.|+|||.+..     ...++.+
T Consensus       141 al~~lH~~~~-~ivH~Dlkp~NIll~~~~~~--~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~  212 (360)
T 3e3p_A          141 SIGCLHLPSV-NVCHRDIKPHNVLVNEADGT--LKLCDFGSAKKLSPSEPNVAYICSRYYRAPELIFG-----NQHYTTA  212 (360)
T ss_dssp             HHHHHTSTTT-CCBCSCCCGGGEEEETTTTE--EEECCCTTCBCCCTTSCCCSTTSCGGGCCHHHHTT-----CSSCCTH
T ss_pred             HHHHHhCCCC-CeecCcCCHHHEEEeCCCCc--EEEeeCCCceecCCCCCcccccCCcceeCHHHHcC-----CCCCCcH
Confidence            999999  85 9999999999999986 555  99999999988765544455678999999999862     2346789


Q ss_pred             cchhhHHHHHHHHHHHHHHHhcCCCCCCC
Q psy320          156 VDPTSIKMYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       156 ~Diwsl~~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      +|+||+|+..      -.+..|.++|...
T Consensus       213 ~Di~slG~il------~ell~g~~pf~~~  235 (360)
T 3e3p_A          213 VDIWSVGCIF------AEMMLGEPIFRGD  235 (360)
T ss_dssp             HHHHHHHHHH------HHHHHSSCSSCCS
T ss_pred             HHHHHHHHHH------HHHHhCCCCcCCC
Confidence            9999998733      3555588777653

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.95  E-value=1.6e-28  Score=200.66  Aligned_cols=144  Identities=17%  Similarity=0.162  Sum_probs=114.8

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +.+.+|+++++++ +||  ||+++++++.    . ...|+||||+ +++|.+++.....+.+++..+..++.|++.||.|
T Consensus       224 ~~~~~E~~~l~~l-~hp--~iv~~~~~~~----~-~~~~iv~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~  295 (452)
T 1fmk_A          224 EAFLQEAQVMKKL-RHE--KLVQLYAVVS----E-EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAY  295 (452)
T ss_dssp             HHHHHHHHHHHHC-CCT--TBCCEEEEEC----S-SSCEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CEeeEEEEEc----C-CceEEEehhhcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence            4567899999999 555  9999999986    2 4689999999 8999999976443459999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC--CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD--QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~--~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      ||++ |++||||||+|||++.++.  +||+|||+++.......  .....++..|+|||.+....      ++.++|+||
T Consensus       296 LH~~-~ivHrDlkp~Nill~~~~~--~kl~DfG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~------~~~~sDvws  366 (452)
T 1fmk_A          296 VERM-NYVHRDLRAANILVGENLV--CKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGR------FTIKSDVWS  366 (452)
T ss_dssp             HHHT-TCCCSCCSGGGEEECGGGC--EEECCCCTTC--------------CCGGGSCHHHHHHCC------CCHHHHHHH
T ss_pred             HHhC-CeeCCCCChhhEEECCCCC--EEECCCccceecCCCceecccCCcccccccCHhHHhcCC------CCccccHHh
Confidence            9996 9999999999999988766  99999999987643221  11335677899999998443      788999999


Q ss_pred             HHHH
Q psy320          161 IKMY  164 (202)
Q Consensus       161 l~~~  164 (202)
                      +|+.
T Consensus       367 lG~~  370 (452)
T 1fmk_A          367 FGIL  370 (452)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9863

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.95  E-value=1.7e-28  Score=204.22  Aligned_cols=144  Identities=17%  Similarity=0.168  Sum_probs=119.4

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +.+.+|+++++++ +||  ||+++++++.    . ...|+||||+ +++|.+++.....+.+++..+..++.|++.||.|
T Consensus       307 ~~~~~E~~~l~~l-~hp--niv~~~~~~~----~-~~~~lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~  378 (535)
T 2h8h_A          307 EAFLQEAQVMKKL-RHE--KLVQLYAVVS----E-EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAY  378 (535)
T ss_dssp             HHHHHHHHHHHHC-CCT--TBCCEEEEEC----S-SSCEEEECCCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CEeeEEEEEe----e-ccceEeeehhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence            4567899999999 455  9999999986    2 4689999999 8999999976443459999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc--CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH--DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~--~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      ||++ |++||||||+|||++.++.  +||+|||+++......  ......++..|+|||.+....      ++.++|+||
T Consensus       379 LH~~-~ivHrDlkp~NIll~~~~~--~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~------~~~~sDvwS  449 (535)
T 2h8h_A          379 VERM-NYVHRDLRAANILVGENLV--CKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGR------FTIKSDVWS  449 (535)
T ss_dssp             HHHT-TCCCSCCSGGGEEECGGGC--EEECCTTSTTTCCCHHHHTTCSTTSCGGGSCHHHHHHCC------CCHHHHHHH
T ss_pred             HHhC-CeeCCCCCHhhEEEcCCCc--EEEcccccceecCCCceecccCCcCcccccCHHHhccCC------CCchhhHHH
Confidence            9996 9999999999999988766  9999999998764321  122345677899999998443      778999999


Q ss_pred             HHHH
Q psy320          161 IKMY  164 (202)
Q Consensus       161 l~~~  164 (202)
                      +|+.
T Consensus       450 lGv~  453 (535)
T 2h8h_A          450 FGIL  453 (535)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9863

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.95  E-value=6.9e-28  Score=183.44  Aligned_cols=156  Identities=15%  Similarity=0.224  Sum_probs=125.7

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +...+|++.++++ +||  ||+++++++.    .....++||||+ +++|.+++.... +.+++..+..++.|++.||.|
T Consensus        48 ~~~~~e~~~l~~l-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~  119 (267)
T 3t9t_A           48 EDFIEEAEVMMKL-SHP--KLVQLYGVCL----EQAPICLVTEFMEHGCLSDYLRTQR-GLFAAETLLGMCLDVCEGMAY  119 (267)
T ss_dssp             HHHHHHHHHHHTC-CCT--TBCCEEEEEC----SSSSCEEEECCCTTCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CEeeEEEEEc----cCCCeEEEEeCCCCCcHHHHHhhCc-ccCCHHHHHHHHHHHHHHHHH
Confidence            3556788888888 455  9999999998    566899999999 899999997653 458999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc--CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH--DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~--~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      ||++ |++|+||||+||+++.++.  ++|+|||.+.......  ......++..|+|||.+....      ++.++|+||
T Consensus       120 lH~~-~i~H~dl~p~Nili~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~------~~~~~Di~s  190 (267)
T 3t9t_A          120 LEEA-CVIHRDLAARNCLVGENQV--IKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSR------YSSKSDVWS  190 (267)
T ss_dssp             HHHT-TCCCSSCCGGGEEECGGGC--EEECCTTGGGGBCCHHHHSTTSTTCCGGGCCHHHHHHCC------CCHHHHHHH
T ss_pred             HHhC-CcccCCCchheEEECCCCC--EEEcccccccccccccccccccccccccccChhhhcCCC------ccchhchhh
Confidence            9996 9999999999999988776  9999999998764321  222345677899999997433      677999999


Q ss_pred             HHHHHHHHHHHHHHHh-cCCCCC
Q psy320          161 IKMYTTFCEILEQCRL-NHQDFR  182 (202)
Q Consensus       161 l~~~~~~~~~~~~~~~-~~~~~~  182 (202)
                      +|+..+      .+.. |.++|.
T Consensus       191 lG~il~------~l~~~g~~p~~  207 (267)
T 3t9t_A          191 FGVLMW------EVFSEGKIPYE  207 (267)
T ss_dssp             HHHHHH------HHHTTSCCTTT
T ss_pred             hHHHHH------HHhccCCCCCC
Confidence            986322      4443 666664

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.95  E-value=2.3e-27  Score=184.69  Aligned_cols=144  Identities=16%  Similarity=0.195  Sum_probs=120.5

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ....+|++.++.+ +||  ||+++++++.    .....|+||||+ +++|.+++.... +.+++..+..++.|++.||.|
T Consensus        69 ~~~~~e~~~l~~l-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~i~~~i~~~l~~  140 (314)
T 3com_A           69 QEIIKEISIMQQC-DSP--HVVKYYGSYF----KNTDLWIVMEYCGAGSVSDIIRLRN-KTLTEDEIATILQSTLKGLEY  140 (314)
T ss_dssp             HHHHHHHHHHHTC-CCT--TBCCEEEEEE----ETTEEEEEEECCTTEEHHHHHHHHT-CCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CCccEEEEEE----eCCEEEEEeecCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHH
Confidence            3456788888887 455  9999999998    456899999999 889999987443 459999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      ||+. |++|+||+|+||+++.++.  ++|+|||.+....... ......+++.|+|||.+..      ..++.++|+||+
T Consensus       141 lH~~-~i~H~dl~p~Nil~~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~Di~sl  211 (314)
T 3com_A          141 LHFM-RKIHRDIKAGNILLNTEGH--AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQE------IGYNCVADIWSL  211 (314)
T ss_dssp             HHHT-TEECCCCSGGGEEECTTCC--EEECCCTTCEECBTTBSCBCCCCSCGGGCCHHHHSS------SCBCTTHHHHHH
T ss_pred             HHhC-CCcCCCcCHHHEEECCCCC--EEEeecccchhhhhhccccCccCCCCCccChhhcCC------CCCCccccHHHH
Confidence            9996 9999999999999998876  9999999998765432 2234578999999999873      347789999999


Q ss_pred             HHH
Q psy320          162 KMY  164 (202)
Q Consensus       162 ~~~  164 (202)
                      |+.
T Consensus       212 G~i  214 (314)
T 3com_A          212 GIT  214 (314)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            863

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.95  E-value=1.1e-28  Score=192.89  Aligned_cols=158  Identities=16%  Similarity=0.143  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK--FQPAPLVVAKIIVNQILEGLN   81 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~--~~~~~~~~~~~~~~qi~~~l~   81 (202)
                      .+.+|+++++.+ +  ||||+++++++.    .+...++||||+ +++|.+++....  ...+++..+..++.|++.||.
T Consensus        81 ~~~~E~~~l~~l-~--h~~iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~  153 (321)
T 2qkw_B           81 EFETEIETLSFC-R--HPHLVSLIGFCD----ERNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLH  153 (321)
T ss_dssp             HHHHHHHGGGSC-C--CTTBCCEEEECC----CTTCCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-C--CCCEeeEEEEEc----CCCeEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHH
Confidence            345677777666 3  559999999998    566899999999 899998886543  235899999999999999999


Q ss_pred             HHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC---CCCCCCCccchhhHHHHhhhhccCCCCCCCcch
Q psy320           82 HLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD---QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDP  158 (202)
Q Consensus        82 ~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Di  158 (202)
                      |||++ |++|+||||+||+++.++.  +||+|||.++.......   .....+++.|+|||.+....      ++.++|+
T Consensus       154 ~lH~~-~ivH~dlkp~Nil~~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~------~~~~~Di  224 (321)
T 2qkw_B          154 YLHTR-AIIHRDVKSINILLDENFV--PKITDFGISKKGTELDQTHLSTVVKGTLGYIDPEYFIKGR------LTEKSDV  224 (321)
T ss_dssp             HHHHT-TEECSCCCSTTEEECTTCC--EEECCCTTCEECSSSSCCCCBCCCEEETTTCCHHHHHHCB------CCTHHHH
T ss_pred             HhcCC-CeecCCCCHHHEEECCCCC--EEEeecccccccccccccccccccCCCccccCHHHhcCCC------CCcccch
Confidence            99996 9999999999999988776  99999999987543211   12345788999999997443      7889999


Q ss_pred             hhHHHHHHHHHHHHHHHhcCCCCCCC
Q psy320          159 TSIKMYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       159 wsl~~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      ||+|+.      +-.+..|..+|...
T Consensus       225 ~slG~i------l~ell~g~~p~~~~  244 (321)
T 2qkw_B          225 YSFGVV------LFEVLCARSAIVQS  244 (321)
T ss_dssp             HHHHHH------HHHHHHCCTTCSCS
T ss_pred             HhHHHH------HHHHHhCCCccccc
Confidence            999973      33555687777543

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.95  E-value=5.2e-28  Score=190.50  Aligned_cols=163  Identities=17%  Similarity=0.199  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+..+.+..+||  ||+++++++......+...++||||+ +++|.+++.......+++..++.++.|++.||.|||
T Consensus        68 ~~~e~~~~~~~~~h~--~i~~~~~~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH  145 (336)
T 3fhr_A           68 ARQEVDHHWQASGGP--HIVCILDVYENMHHGKRCLLIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLH  145 (336)
T ss_dssp             HHHHHHHHHHHTTST--TBCCEEEEEEEEETTEEEEEEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCC--ChHHHHHHHhhccCCCceEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            344555544444555  99999999986554567899999999 889999998776567999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCC-cceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADH-VYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~-~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      ++ |++||||||+||+++.++ ...++|+|||.+...... ......+++.|+|||.+....      ++.++|+||+|+
T Consensus       146 ~~-~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~t~~y~aPE~~~~~~------~~~~~Di~slG~  217 (336)
T 3fhr_A          146 SH-NIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQN-ALQTPCYTPYYVAPEVLGPEK------YDKSCDMWSLGV  217 (336)
T ss_dssp             HT-TEECSCCSGGGEEESCSSTTCCEEECCCTTCEEC-----------------------CH------HHHHHHHHHHHH
T ss_pred             hC-CeecCCCCHHHEEEEecCCCceEEEeccccceecccc-ccccCCCCcCccChhhhCCCC------CCchhhHHHHHH
Confidence            96 999999999999998643 234999999999876432 223456899999999986433      667999999987


Q ss_pred             HHHHHHHHHHHHhcCCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      ..+      .+..|.++|...
T Consensus       218 il~------~l~~g~~pf~~~  232 (336)
T 3fhr_A          218 IMY------ILLCGFPPFYSN  232 (336)
T ss_dssp             HHH------HHHHSSCCC---
T ss_pred             HHH------HHHHCCCCCCCc
Confidence            333      555588877543

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.95  E-value=9.9e-28  Score=184.63  Aligned_cols=150  Identities=15%  Similarity=0.153  Sum_probs=108.9

Q ss_pred             CCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHc--CCCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCC
Q psy320           19 HPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQ--KFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKP   96 (202)
Q Consensus        19 ~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~--~~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p   96 (202)
                      ..||||+++++++.    .+...++||||+.++|.+++...  ..+.+++..++.++.|++.||.|||+++|++|+||||
T Consensus        63 ~~h~~iv~~~~~~~----~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dlkp  138 (290)
T 3fme_A           63 VDCPFTVTFYGALF----REGDVWICMELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLSVIHRDVKP  138 (290)
T ss_dssp             CCCTTBCCEEEEEE----CSSSEEEEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHSCCCCCCCSG
T ss_pred             CCCCeEEEEeeeee----ccCCEEEEEehhccchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCH
Confidence            34669999999998    56689999999988988877642  2356999999999999999999999945999999999


Q ss_pred             CceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHh
Q psy320           97 ESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRL  176 (202)
Q Consensus        97 ~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~  176 (202)
                      +||+++.++.  ++|+|||.+.............+++.|+|||.+....  ....++.++|+||+|+..+      .+..
T Consensus       139 ~Nil~~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~--~~~~~~~~~Di~slG~il~------~l~~  208 (290)
T 3fme_A          139 SNVLINALGQ--VKMCDFGISGYLVDDVAKDIDAGCKPYMAPERINPEL--NQKGYSVKSDIWSLGITMI------ELAI  208 (290)
T ss_dssp             GGCEECTTCC--EEBCCC---------------CCCCCCSCHHHHSCCT--TC--CCHHHHHHHHHHHHH------HHHH
T ss_pred             HHEEECCCCC--EEEeecCCcccccccccccccCCCccccChhhcChhh--cCcCCCcHHHHHHHHHHHH------HHHH
Confidence            9999988776  9999999998775544444457899999999974211  1334677999999987332      4555


Q ss_pred             cCCCCC
Q psy320          177 NHQDFR  182 (202)
Q Consensus       177 ~~~~~~  182 (202)
                      |..+|.
T Consensus       209 g~~p~~  214 (290)
T 3fme_A          209 LRFPYD  214 (290)
T ss_dssp             TSCSSC
T ss_pred             CCCCcc
Confidence            777665

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.95  E-value=3.5e-28  Score=193.69  Aligned_cols=158  Identities=20%  Similarity=0.242  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecC--CceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGI--NGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~--~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ...+|+++++.+ +||  ||++++++|...+.  .....|+|+++++++|.+++..   +++++..+..++.|++.||.|
T Consensus        74 ~~~~E~~~l~~l-~hp--nIv~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~~~~---~~l~~~~~~~i~~qi~~aL~~  147 (367)
T 2fst_X           74 RTYRELRLLKHM-KHE--NVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKC---QKLTDDHVQFLIYQILRGLKY  147 (367)
T ss_dssp             HHHHHHHHHHHC-CCT--TBCCCSEEECSCSSGGGCCCCEEEEECCCEECC--------CCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCC--CCCcEEEEEecCCccccCCeEEEEecccCCCHHHHHhc---CCCCHHHHHHHHHHHHHHHHH
Confidence            445788888888 455  99999999874221  2357899999999999998865   359999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      ||+. |++||||||+|||++.++.  +||+|||+++.....  .....+|+.|+|||.+..     ...++.++|+||+|
T Consensus       148 LH~~-givH~Dlkp~NIll~~~~~--~kL~DFG~a~~~~~~--~~~~~~t~~y~aPE~~~~-----~~~~~~~~DiwslG  217 (367)
T 2fst_X          148 IHSA-DIIHRDLKPSNLAVNEDCE--LKILDFGLARHTADE--MTGYVATRWYRAPEIMLN-----WMHYNQTVDIWSVG  217 (367)
T ss_dssp             HHHT-TCCCCCCCGGGEEECTTCC--EEECC-----------------CCCTTCCHHHHTT-----CCSCCTTHHHHHHH
T ss_pred             HHHC-CeeeCCCCHhhEEECCCCC--EEEeecccccccccc--CCCcCcCcCccChHHHcC-----CcCCCchhhHHHHH
Confidence            9995 9999999999999998876  999999999875422  234578999999999873     23477899999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      +.      +..+..|.++|...
T Consensus       218 ~i------l~ell~g~~pf~~~  233 (367)
T 2fst_X          218 CI------MAELLTGRTLFPGT  233 (367)
T ss_dssp             HH------HHHHHHSSCSCCCS
T ss_pred             HH------HHHHHhCCCCCCCC
Confidence            73      33556688888643

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.95  E-value=7e-28  Score=187.58  Aligned_cols=154  Identities=18%  Similarity=0.203  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|++.++++ +|  |||+++++++..    ....|+||||+ +++|.+++....  .+++..+..++.|++.||.||
T Consensus        80 ~~~~e~~~l~~l-~h--p~iv~~~~~~~~----~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~l  150 (309)
T 2h34_A           80 RMQREARTAGRL-QE--PHVVPIHDFGEI----DGQLYVDMRLINGVDLAAMLRRQG--PLAPPRAVAIVRQIGSALDAA  150 (309)
T ss_dssp             HHHHHHHHHTTC-CC--TTBCCEEEEEEE----TTEEEEEEECCCCEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhc-CC--CCeeEEEEEEee----CCeEEEEEEecCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHH
Confidence            345677777777 44  599999999984    56899999999 889999998764  499999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC--CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD--QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~--~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      |+. |++|+||||+||+++.++.  ++|+|||.+........  .....+++.|+|||.+...      .++.++|+||+
T Consensus       151 H~~-~i~H~dlkp~NIl~~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~------~~~~~~Di~sl  221 (309)
T 2h34_A          151 HAA-GATHRDVKPENILVSADDF--AYLVDFGIASATTDEKLTQLGNTVGTLYYMAPERFSES------HATYRADIYAL  221 (309)
T ss_dssp             HHT-TCCCSCCCGGGEEECTTSC--EEECSCCC----------------CCGGGCCGGGTCC----------CCCHHHHH
T ss_pred             HHC-cCCcCCCChHHEEEcCCCC--EEEecCccCccccccccccccccCCCcCccCHHHHcCC------CCCchHhHHHH
Confidence            996 9999999999999998876  99999999987654321  1235688999999998733      36779999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCC
Q psy320          162 KMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      |+..+      .+..|..+|.
T Consensus       222 G~il~------~l~~g~~pf~  236 (309)
T 2h34_A          222 TCVLY------ECLTGSPPYQ  236 (309)
T ss_dssp             HHHHH------HHHHSSCSSC
T ss_pred             HHHHH------HHHHCCCCCC
Confidence            86322      4444766664

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.95  E-value=8.5e-28  Score=183.85  Aligned_cols=155  Identities=18%  Similarity=0.219  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|++.++.+ +|  |||+++++++.    .....++||||+ +++|.+++....  .+++..+..++.|++.||.||
T Consensus        57 ~~~~e~~~l~~l-~h--~~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~l  127 (276)
T 2h6d_A           57 KIKREIQNLKLF-RH--PHIIKLYQVIS----TPTDFFMVMEYVSGGELFDYICKHG--RVEEMEARRLFQQILSAVDYC  127 (276)
T ss_dssp             HHHHHHHHHHTC-CC--TTBCCEEEEEE----CSSEEEEEEECCCSCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CC--CCEeEEEEEEe----cCCeEEEEEeccCCCcHHHHHhccC--CCCHHHHHHHHHHHHHHHHHH
Confidence            445677777777 45  49999999998    567999999999 899999998764  499999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |+. |++|+||+|+||+++.++.  ++|+|||.+.............+++.|+|||.+....     ..+.++|+||+|+
T Consensus       128 H~~-~i~H~dl~p~Nil~~~~~~--~~l~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~~Di~slG~  199 (276)
T 2h6d_A          128 HRH-MVVHRDLKPENVLLDAHMN--AKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRL-----YAGPEVDIWSCGV  199 (276)
T ss_dssp             HHH-CSSCCCCCGGGEEECTTSC--EEECCCCGGGCCCC-------------CCTGGGTTSC-----CCHHHHHHHHHHH
T ss_pred             HHC-CCccCCCChhhEEECCCCC--EEEeecccccccCCCcceecccCCccccCHHHHcCCC-----CCCccchHHHHHH
Confidence            997 9999999999999998876  9999999998775443334567889999999987322     1245899999986


Q ss_pred             HHHHHHHHHHHHhcCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~  182 (202)
                      ..+      .+..|..+|.
T Consensus       200 ~l~------~l~~g~~p~~  212 (276)
T 2h6d_A          200 ILY------ALLCGTLPFD  212 (276)
T ss_dssp             HHH------HHHHSSCSSC
T ss_pred             HHH------HHHhCCCCCC
Confidence            322      4444666654

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.95  E-value=7.2e-28  Score=188.78  Aligned_cols=144  Identities=14%  Similarity=0.134  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+++++++ +||  ||+++++++...  +....++||||+ +++|.+++.... +.+++..+..++.|++.||.||
T Consensus        70 ~~~~E~~~l~~l-~h~--~i~~~~~~~~~~--~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~al~~l  143 (327)
T 3lxl_A           70 DFQREIQILKAL-HSD--FIVKYRGVSYGP--GRQSLRLVMEYLPSGCLRDFLQRHR-ARLDASRLLLYSSQICKGMEYL  143 (327)
T ss_dssp             HHHHHHHHHHTC-CCT--TBCCEEEEEECS--SSCEEEEEEECCTTCBHHHHHHHHG-GGCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc-CCC--ceeEEEEEEecC--CCceEEEEEeecCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHH
Confidence            356788888888 455  999999998731  356899999999 999999997643 3499999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc----CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH----DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~----~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      |+. |++|+||||+||+++.++.  ++|+|||.+.......    ......++..|+|||.+....      ++.++|+|
T Consensus       144 H~~-~ivH~Dikp~NIl~~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~------~~~~~Di~  214 (327)
T 3lxl_A          144 GSR-RCVHRDLAARNILVESEAH--VKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLSDNI------FSRQSDVW  214 (327)
T ss_dssp             HHT-TEECSCCSGGGEEEEETTE--EEECCGGGCEECCTTCSEEECSSCCCSCGGGSCHHHHHHCE------EEHHHHHH
T ss_pred             HhC-CccCCCCChhhEEECCCCC--EEEcccccceecccCCccceeeccCCccccccCHHHhccCC------CChHHhHH
Confidence            996 9999999999999998876  9999999998764322    122346788899999997543      67799999


Q ss_pred             hHHH
Q psy320          160 SIKM  163 (202)
Q Consensus       160 sl~~  163 (202)
                      |+|+
T Consensus       215 slG~  218 (327)
T 3lxl_A          215 SFGV  218 (327)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9975

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.95  E-value=2.3e-27  Score=182.94  Aligned_cols=158  Identities=14%  Similarity=0.154  Sum_probs=124.8

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ...+|+++++.++ |+  +++..+..+..   .+...++||||++++|.+++.... +++++..+..++.|++.||.|||
T Consensus        50 ~~~~e~~~l~~l~-~~--~~i~~~~~~~~---~~~~~~lv~e~~~~~L~~~~~~~~-~~~~~~~~~~i~~qi~~~l~~LH  122 (296)
T 4hgt_A           50 QLHIESKIYKMMQ-GG--VGIPTIRWCGA---EGDYNVMVMELLGPSLEDLFNFCS-RKFSLKTVLLLADQMISRIEYIH  122 (296)
T ss_dssp             CHHHHHHHHHHHT-TS--TTCCCEEEEEE---ETTEEEEEEECCCCBHHHHHHHTT-SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc-CC--CCCCeeeeecC---CCCceEEEEEccCCCHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHH
Confidence            4567899999995 43  55555455433   456899999999999999997543 45999999999999999999999


Q ss_pred             hhCCccccCCCCCceee---ecCCcceeEEeecccccccccccC--------CCCCCCCccchhhHHHHhhhhccCCCCC
Q psy320           85 TKHNLVHTSIKPESIFF---KADHVYIMTLINIQQATTHQECHD--------QQSSSKTKSKIFCEILEQCRLNQDFRLD  153 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~---~~~~~~~~~l~Dfg~a~~~~~~~~--------~~~~~~~~~~~ape~~~~~~~~~~~~~~  153 (202)
                      +. |++||||||+|||+   +.++.  +||+|||.++.......        .....+++.|+|||.+...      .++
T Consensus       123 ~~-~ivH~Dlkp~NIl~~~~~~~~~--~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~  193 (296)
T 4hgt_A          123 SK-NFIHRDVKPDNFLMGLGKKGNL--VYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGI------EQS  193 (296)
T ss_dssp             HT-TEECSCCSGGGEEECCGGGTTC--EEECCCTTCEECBCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTC------CCC
T ss_pred             HC-CeecCCCCHHHeeeeccCCCCe--EEEecCccceeccCcccCccCCCCcccccCCCccccchHHhcCC------CCC
Confidence            96 99999999999999   55555  99999999987654322        1245789999999999843      377


Q ss_pred             CCcchhhHHHHHHHHHHHHHHHhcCCCCCCC
Q psy320          154 PRVDPTSIKMYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       154 ~~~Diwsl~~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      .++|+||+|+..      -.+..|..+|...
T Consensus       194 ~~~Di~slG~il------~~l~~g~~pf~~~  218 (296)
T 4hgt_A          194 RRDDLESLGYVL------MYFNLGSLPWQGL  218 (296)
T ss_dssp             HHHHHHHHHHHH------HHHHHSSCTTSSC
T ss_pred             chhHHHHHHHHH------HHHhcCCCCCccc
Confidence            899999999733      3666688888653

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.95  E-value=3.5e-28  Score=189.26  Aligned_cols=159  Identities=14%  Similarity=0.144  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCC--------------CCCCHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKF--------------QPAPLVVA   69 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~--------------~~~~~~~~   69 (202)
                      ...+|+++++++.+||  ||+++++++..   .+...++||||+ +++|.+++.....              ..+++..+
T Consensus        76 ~~~~E~~~l~~l~~hp--~iv~~~~~~~~---~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (316)
T 2xir_A           76 ALMSELKILIHIGHHL--NVVNLLGACTK---PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHL  150 (316)
T ss_dssp             HHHHHHHHHHHHCCCT--TBCCEEEEECC---TTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHH
T ss_pred             HHHHHHHHHHhcccCC--CeeeEEEEEec---CCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHH
Confidence            4567899999995555  99999999874   345689999999 8999999976542              12889999


Q ss_pred             HHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC---CCCCCCCccchhhHHHHhhhh
Q psy320           70 KIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD---QQSSSKTKSKIFCEILEQCRL  146 (202)
Q Consensus        70 ~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~ape~~~~~~~  146 (202)
                      ..++.|++.||.|||+. |++|+||||+||+++.++.  ++|+|||.++.......   .....+++.|+|||.+...  
T Consensus       151 ~~~~~qi~~al~~lH~~-~i~H~dikp~Nil~~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~--  225 (316)
T 2xir_A          151 ICYSFQVAKGMEFLASR-KCIHRDLAARNILLSEKNV--VKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDR--  225 (316)
T ss_dssp             HHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEECGGGC--EEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHhC-CcccccCccceEEECCCCC--EEECCCccccccccCccceeccCCCcceeecCchhhccc--
Confidence            99999999999999996 9999999999999988776  99999999987643221   1134567889999999743  


Q ss_pred             ccCCCCCCCcchhhHHHHHHHHHHHHHHHh-cCCCCCC
Q psy320          147 NQDFRLDPRVDPTSIKMYTTFCEILEQCRL-NHQDFRP  183 (202)
Q Consensus       147 ~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~-~~~~~~~  183 (202)
                          .++.++|+||+|+..      -.+.. |..+|..
T Consensus       226 ----~~~~~~Di~slG~il------~~l~t~g~~p~~~  253 (316)
T 2xir_A          226 ----VYTIQSDVWSFGVLL------WEIFSLGASPYPG  253 (316)
T ss_dssp             ----CCCHHHHHHHHHHHH------HHHHTTSCCSSTT
T ss_pred             ----cccchhHHHHHHHHH------HHHHhCCCCCCcc
Confidence                377899999998732      24443 7777654

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.95  E-value=1.8e-28  Score=195.73  Aligned_cols=158  Identities=11%  Similarity=0.080  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+++++++ +  ||||+++++++..   .....++||||+ +++|.+++.... ..+++..+..++.|++.||.||
T Consensus       136 ~~~~E~~il~~l-~--hpnIv~~~~~~~~---~~~~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~L  208 (373)
T 3c1x_A          136 QFLTEGIIMKDF-S--HPNVLSLLGICLR---SEGSPLVVLPYMKHGDLRNFIRNET-HNPTVKDLIGFGLQVAKGMKFL  208 (373)
T ss_dssp             HHHHHHTTSTTC-C--CTTBCCCCEEECC---CSSCCEEEEECCTTCBHHHHHHCTT-CCCBHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-C--CCCcceEEEEEEc---CCCCeEEEEECCCCCCHHHHHhhcc-cCCCHHHHHHHHHHHHHHHHHH
Confidence            345677777777 4  4599999998753   345788999999 889999997543 4588999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC-----CCCCCCCccchhhHHHHhhhhccCCCCCCCcch
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD-----QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDP  158 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~-----~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Di  158 (202)
                      |++ |++||||||+|||++.++.  +||+|||+++.......     .....+++.|+|||.+...      .++.++|+
T Consensus       209 H~~-~ivHrDlkp~NIll~~~~~--~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~------~~~~~~Dv  279 (373)
T 3c1x_A          209 ASK-KFVHRDLAARNCMLDEKFT--VKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQ------KFTTKSDV  279 (373)
T ss_dssp             HHT-TCCCSCCCGGGEEECTTCC--EEECCC---------------------CCGGGSCHHHHHHC------CCCHHHHH
T ss_pred             HHC-CEecCccchheEEECCCCC--EEEeeccccccccccccccccccCCCCCcccccChHHhcCC------CCCcHHHH
Confidence            996 9999999999999988776  99999999986543221     1234567789999999843      37789999


Q ss_pred             hhHHHHHHHHHHHHHHHhcCCCCCC
Q psy320          159 TSIKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       159 wsl~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      ||+|+..+     +.+..|.++|..
T Consensus       280 wSlG~il~-----ellt~~~~p~~~  299 (373)
T 3c1x_A          280 WSFGVLLW-----ELMTRGAPPYPD  299 (373)
T ss_dssp             HHHHHHHH-----HHHTTSCCSCTT
T ss_pred             HHHHHHHH-----HHHhCcCCCCCC
Confidence            99987322     223336666643

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.95  E-value=3.5e-28  Score=197.54  Aligned_cols=160  Identities=18%  Similarity=0.183  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      +.+|+++++.+.+||  ||+++++++.    +....|+||||++++|.+++.... ..+++..+..++.|++.||.|||+
T Consensus        64 ~~~E~~~l~~l~~Hp--nIv~l~~~~~----~~~~~~lv~E~~~g~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~LH~  136 (432)
T 3p23_A           64 ADREVQLLRESDEHP--NVIRYFCTEK----DRQFQYIAIELCAATLQEYVEQKD-FAHLGLEPITLLQQTTSGLAHLHS  136 (432)
T ss_dssp             CHHHHHHHHHSCCCT--TBCCEEEEEE----ETTEEEEEEECCSEEHHHHHHSSS-CCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCC--CcCeEEEEEe----cCCEEEEEEECCCCCHHHHHHhcC-CCccchhHHHHHHHHHHHHHHHHH
Confidence            467899998885555  9999999998    466899999999889999997654 235556677899999999999999


Q ss_pred             hCCccccCCCCCceeeec---CCcceeEEeeccccccccccc----CCCCCCCCccchhhHHHHhhhhccCCCCCCCcch
Q psy320           86 KHNLVHTSIKPESIFFKA---DHVYIMTLINIQQATTHQECH----DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDP  158 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~---~~~~~~~l~Dfg~a~~~~~~~----~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Di  158 (202)
                      . ||+||||||+|||++.   ++...++|+|||+|+......    ......+|+.|+|||++....   ...++.++|+
T Consensus       137 ~-~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~---~~~~t~~~Di  212 (432)
T 3p23_A          137 L-NIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDC---KENPTYTVDI  212 (432)
T ss_dssp             T-TCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC------------CCSCTTSCCGGGTSCC------CCCTHHHH
T ss_pred             C-cCEeCCCCHHHEEEecCCCCCceeEEEecccceeeccCCCcceeeccccCCCcCccChhhhhccc---ccCCCcHHHH
Confidence            6 9999999999999954   333358899999998765332    122357999999999986321   2335668999


Q ss_pred             hhHHHHHHHHHHHHHHHh-cCCCCC
Q psy320          159 TSIKMYTTFCEILEQCRL-NHQDFR  182 (202)
Q Consensus       159 wsl~~~~~~~~~~~~~~~-~~~~~~  182 (202)
                      ||+|+..+      .++. |.++|.
T Consensus       213 wSlG~il~------ellt~g~~pf~  231 (432)
T 3p23_A          213 FSAGCVFY------YVISEGSHPFG  231 (432)
T ss_dssp             HHHHHHHH------HHHTTSCBTTB
T ss_pred             HHHHHHHH------HHHcCCCCCcc
Confidence            99986322      3443 776664

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.95  E-value=6.3e-28  Score=186.40  Aligned_cols=144  Identities=11%  Similarity=0.127  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+++++.+ +||  ||+++++++..   .....++||||+ +++|.+++.... +.+++..+..++.|++.||.||
T Consensus        68 ~~~~E~~~l~~l-~h~--~iv~~~~~~~~---~~~~~~~v~e~~~~~~L~~~~~~~~-~~~~~~~~~~i~~qi~~~l~~L  140 (298)
T 3pls_A           68 AFLREGLLMRGL-NHP--NVLALIGIMLP---PEGLPHVLLPYMCHGDLLQFIRSPQ-RNPTVKDLISFGLQVARGMEYL  140 (298)
T ss_dssp             HHHHHHHHHHTC-CCT--TBCCCCEEECC---SSSCCEEEECCCTTCBHHHHHHCTT-CCCBHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCC--CeeeEEEEEec---CCCCcEEEEecccCCCHHHHHhccc-cCCCHHHHHHHHHHHHHHHHHH
Confidence            445788888877 455  99999999973   233458999999 999999997643 5689999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-----CCCCCCCCccchhhHHHHhhhhccCCCCCCCcch
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-----DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDP  158 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-----~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Di  158 (202)
                      |+. |++|+||||+||+++.++.  ++|+|||.++......     ......+++.|++||.+..      ..++.++|+
T Consensus       141 H~~-~i~H~dikp~Nili~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~Di  211 (298)
T 3pls_A          141 AEQ-KFVHRDLAARNCMLDESFT--VKVADFGLARDILDREYYSVQQHRHARLPVKWTALESLQT------YRFTTKSDV  211 (298)
T ss_dssp             HHT-TCCCSCCSGGGEEECTTCC--EEECCTTSSCTTTTGGGGCSCCSSCTTCGGGGSCHHHHTT------CCCCHHHHH
T ss_pred             HhC-CcccCCCCcceEEEcCCCc--EEeCcCCCcccccCCcccccccCcCCCCCccccChhhhcc------CCCChhhch
Confidence            996 9999999999999988776  9999999998654322     1223467789999999973      347789999


Q ss_pred             hhHHHH
Q psy320          159 TSIKMY  164 (202)
Q Consensus       159 wsl~~~  164 (202)
                      ||+|+.
T Consensus       212 ~slG~i  217 (298)
T 3pls_A          212 WSFGVL  217 (298)
T ss_dssp             HHHHHH
T ss_pred             hhHHHH
Confidence            999863

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.95  E-value=3.9e-28  Score=187.24  Aligned_cols=158  Identities=13%  Similarity=0.155  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+++++++ +  ||||+++++++.     ....++||||+ +++|.+++.... +.+++..+..++.|++.||.||
T Consensus        66 ~~~~E~~~l~~l-~--h~~iv~~~~~~~-----~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~L~~l  136 (289)
T 3og7_A           66 AFKNEVGVLRKT-R--HVNILLFMGYST-----APQLAIVTQWCEGSSLYHHLHASE-TKFEMKKLIDIARQTARGMDYL  136 (289)
T ss_dssp             HHHHHHHHHTTC-C--CTTBCCEEEEEC-----SSSCEEEEECCCEEEHHHHHTTC----CCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-C--CCcEEEEEeecc-----CCccEEEEEecCCCcHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHHH
Confidence            456778777777 4  459999999654     44689999999 899999986543 5699999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc---CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH---DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~---~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      |+. |++|+||||+||+++.++.  ++|+|||.+.......   ......+++.|+|||.+....   ...++.++|+||
T Consensus       137 H~~-~i~H~Dlkp~Nil~~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~~~~~~~~Di~s  210 (289)
T 3og7_A          137 HAK-SIIHRDLKSNNIFLHEDNT--VKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQD---SNPYSFQSDVYA  210 (289)
T ss_dssp             HHT-TCCCSCCCGGGEEEETTTE--EEECCCC------------------CCCTTCCHHHHC-------CCSCHHHHHHH
T ss_pred             HhC-CcccccCccceEEECCCCC--EEEccceeccccccccccccccccCCCccccCchhhcccC---CCCCCcccchHH
Confidence            996 9999999999999998876  9999999998654321   112356899999999986332   344677999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCC
Q psy320          161 IKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       161 l~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +|+..+      .+..|..+|..
T Consensus       211 lG~il~------el~~g~~p~~~  227 (289)
T 3og7_A          211 FGIVLY------ELMTGQLPYSN  227 (289)
T ss_dssp             HHHHHH------HHHHSSCTTSS
T ss_pred             HHHHHH------HHHHCCCCccc
Confidence            987332      44447666643

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.95  E-value=1e-27  Score=186.13  Aligned_cols=158  Identities=18%  Similarity=0.245  Sum_probs=128.3

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK-FQPAPLVVAKIIVNQILEGLN   81 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~-~~~~~~~~~~~~~~qi~~~l~   81 (202)
                      +...+|+++++.+ +||  ||+++++++.    .....++||||+ +++|.+++.... ...+++..+..++.|++.||.
T Consensus        75 ~~~~~E~~~l~~l-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~  147 (307)
T 2nru_A           75 QQFDQEIKVMAKC-QHE--NLVELLGFSS----DGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGIN  147 (307)
T ss_dssp             HHHHHHHHHHHHC-CCT--TBCCEEEEEC----SSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc-CCC--CeEEEEEEEe----cCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHH
Confidence            3456788888888 455  9999999998    566899999999 999999987543 345999999999999999999


Q ss_pred             HHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC---CCCCCCCccchhhHHHHhhhhccCCCCCCCcch
Q psy320           82 HLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD---QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDP  158 (202)
Q Consensus        82 ~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Di  158 (202)
                      |||+. |++|+||||+||+++.++.  ++|+|||.+........   .....+++.|+|||.+..       .++.++|+
T Consensus       148 ~lH~~-~i~H~dlkp~Nili~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-------~~~~~~Dv  217 (307)
T 2nru_A          148 FLHEN-HHIHRDIKSANILLDEAFT--AKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG-------EITPKSDI  217 (307)
T ss_dssp             HHHHT-TEECSCCCGGGEEECTTCC--EEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTT-------EECTHHHH
T ss_pred             HHhcC-CeecCCCCHHHEEEcCCCc--EEEeecccccccccccccccccccCCCcCcCChHHhcC-------CCCccchh
Confidence            99996 9999999999999988776  99999999987643221   223578999999998762       25779999


Q ss_pred             hhHHHHHHHHHHHHHHHhcCCCCCCC
Q psy320          159 TSIKMYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       159 wsl~~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      ||+|+.      +..+..|.++|...
T Consensus       218 ~slG~i------l~~l~~g~~p~~~~  237 (307)
T 2nru_A          218 YSFGVV------LLEIITGLPAVDEH  237 (307)
T ss_dssp             HHHHHH------HHHHHHCCCSBCTT
T ss_pred             HHHHHH------HHHHHHCCCCcccC
Confidence            999973      33566688877643

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.95  E-value=6e-28  Score=188.86  Aligned_cols=159  Identities=18%  Similarity=0.273  Sum_probs=126.0

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+++++++ +||  ||+++++++.    .+ ..|+||||+ +++|.+++...  +.+++..++.++.|++.||.|||
T Consensus        62 ~~~E~~~l~~l-~h~--~i~~~~~~~~----~~-~~~lv~e~~~~~~L~~~~~~~--~~~~~~~~~~~~~qi~~~l~~lH  131 (322)
T 2ycf_A           62 VETEIEILKKL-NHP--CIIKIKNFFD----AE-DYYIVLELMEGGELFDKVVGN--KRLKEATCKLYFYQMLLAVQYLH  131 (322)
T ss_dssp             HHHHHHHHHHC-CCT--TBCCEEEEEE----SS-SEEEEEECCTTEETHHHHSTT--CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCC--CCceEeeEEc----CC-ceEEEEecCCCCcHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHH
Confidence            46788888888 555  9999999987    33 389999999 88999988654  45999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCC-cceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADH-VYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~-~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      +. |++|+||||+||+++.++ ...+||+|||.+.............+++.|+|||.+....   ...++.++|+||+|+
T Consensus       132 ~~-~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~~~~~~~~Di~slG~  207 (322)
T 2ycf_A          132 EN-GIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVG---TAGYNRAVDCWSLGV  207 (322)
T ss_dssp             HT-TEECCCCSGGGEEESSSSSSCCEEECCCTTCEECCCCHHHHHHHSCCTTCCHHHHHHTT---TTTCTTHHHHHHHHH
T ss_pred             HC-CeeccCCCHHHEEEecCCCCCeEEEccCccceecccccccccccCCcCccCchhhccCC---CCCCCchhhHHHHHH
Confidence            96 999999999999998654 2349999999998764322222346889999999986322   344678999999997


Q ss_pred             HHHHHHHHHHHHhcCCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      ..      ..+..|.++|...
T Consensus       208 il------~~l~~g~~pf~~~  222 (322)
T 2ycf_A          208 IL------FICLSGYPPFSEH  222 (322)
T ss_dssp             HH------HHHHHSSCSSCST
T ss_pred             HH------HHHHhCCCCCccc
Confidence            33      3556688877643

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.95  E-value=4.8e-28  Score=204.37  Aligned_cols=143  Identities=13%  Similarity=0.209  Sum_probs=114.6

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +.+.+|+++++++ +||  ||+++++++.    . ...++||||+ +++|.+++.... +.+++..+..++.|++.||.|
T Consensus       381 ~~~~~E~~il~~l-~hp--niv~l~~~~~----~-~~~~lv~E~~~~g~L~~~l~~~~-~~l~~~~~~~i~~qi~~~L~~  451 (613)
T 2ozo_A          381 EEMMREAQIMHQL-DNP--YIVRLIGVCQ----A-EALMLVMEMAGGGPLHKFLVGKR-EEIPVSNVAELLHQVSMGMKY  451 (613)
T ss_dssp             HHHHHHHHHHTTC-CCT--TBCCEEEEEE----S-SSEEEEEECCTTCBHHHHHTTCT-TTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CEeeEEEEec----c-CCeEEEEEeCCCCcHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHH
Confidence            3466788888888 455  9999999997    3 3589999999 999999986543 459999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC----CCCCCccchhhHHHHhhhhccCCCCCCCcch
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ----SSSKTKSKIFCEILEQCRLNQDFRLDPRVDP  158 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~----~~~~~~~~~ape~~~~~~~~~~~~~~~~~Di  158 (202)
                      ||++ ||+||||||+|||++.++.  +||+|||+++.........    ...+++.|+|||.+...      .++.++|+
T Consensus       452 LH~~-~iiHrDlkp~NILl~~~~~--vkL~DFGla~~~~~~~~~~~~~~~~~~~~~y~APE~~~~~------~~~~~sDv  522 (613)
T 2ozo_A          452 LEEK-NFVHRNLAARNVLLVNRHY--AKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFR------KFSSRSDV  522 (613)
T ss_dssp             HHHT-TCCCSCCSGGGEEEEETTE--EEECCCSTTTTCC--------------CCTTSCHHHHHHC------CCCHHHHH
T ss_pred             HHHC-CEEcCcCCHHHEEEcCCCc--EEEeeccCcccccCCCceeeeccCCCCccceeCHhhhcCC------CCCcHHHH
Confidence            9996 9999999999999998876  9999999998764322111    23455789999999743      37889999


Q ss_pred             hhHHHH
Q psy320          159 TSIKMY  164 (202)
Q Consensus       159 wsl~~~  164 (202)
                      ||+|+.
T Consensus       523 wSlGv~  528 (613)
T 2ozo_A          523 WSYGVT  528 (613)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999863

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.95  E-value=1.2e-27  Score=184.15  Aligned_cols=155  Identities=12%  Similarity=0.210  Sum_probs=123.8

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++.+ +||  ||+++++++.     ....++||||+ +++|.+++.... +.+++..+..++.|++.||.||
T Consensus        56 ~~~~E~~~l~~l-~h~--~i~~~~~~~~-----~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~l~~l  126 (287)
T 1u59_A           56 EMMREAQIMHQL-DNP--YIVRLIGVCQ-----AEALMLVMEMAGGGPLHKFLVGKR-EEIPVSNVAELLHQVSMGMKYL  126 (287)
T ss_dssp             HHHHHHHHHHHC-CCT--TBCCEEEEEE-----SSSEEEEEECCTTEEHHHHHTTCT-TTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCC--CEeEEEEEec-----CCCcEEEEEeCCCCCHHHHHHhCC-ccCCHHHHHHHHHHHHHHHHHH
Confidence            356788888888 555  9999999995     23589999999 889999986543 4599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC----CCCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD----QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~----~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      |+. |++|+||||+||+++.++.  ++|+|||.+........    .....+++.|+|||.+....      ++.++|+|
T Consensus       127 H~~-~i~H~dlkp~Nili~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~------~~~~~Di~  197 (287)
T 1u59_A          127 EEK-NFVHRDLAARNVLLVNRHY--AKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRK------FSSRSDVW  197 (287)
T ss_dssp             HHT-TEECCCCSGGGEEEEETTE--EEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHHHCE------ECHHHHHH
T ss_pred             HHC-CEeeCCCchheEEEcCCCC--EEECcccceeeeccCcceeeccccccccccccCHHHhccCC------CCchhhHH
Confidence            996 9999999999999998876  99999999987643221    12335678899999997433      67799999


Q ss_pred             hHHHHHHHHHHHHHHHh-cCCCCCC
Q psy320          160 SIKMYTTFCEILEQCRL-NHQDFRP  183 (202)
Q Consensus       160 sl~~~~~~~~~~~~~~~-~~~~~~~  183 (202)
                      |+|+..+      .+.. |..+|..
T Consensus       198 slG~il~------ellt~g~~p~~~  216 (287)
T 1u59_A          198 SYGVTMW------EALSYGQKPYKK  216 (287)
T ss_dssp             HHHHHHH------HHHTTSCCTTTT
T ss_pred             HHHHHHH------HHHcCCCCCccc
Confidence            9987322      4444 7766643

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.95  E-value=1.7e-27  Score=184.66  Aligned_cols=154  Identities=16%  Similarity=0.219  Sum_probs=125.8

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +...+|+.+++.+ +||  ||+++++++.    .....|+||||+ +++|.+++..   +++++..+..++.|++.||.|
T Consensus        65 ~~~~~e~~~l~~l-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~---~~~~~~~~~~~~~qi~~~l~~  134 (303)
T 3a7i_A           65 EDIQQEITVLSQC-DSP--YVTKYYGSYL----KDTKLWIIMEYLGGGSALDLLEP---GPLDETQIATILREILKGLDY  134 (303)
T ss_dssp             HHHHHHHHHHHHC-CCT--TBCCEEEEEE----ETTEEEEEEECCTTEEHHHHHTT---SCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CEeEEEEEEe----cCCeEEEEEEeCCCCcHHHHHhc---CCCCHHHHHHHHHHHHHHHHH
Confidence            3456788888887 455  9999999998    456899999999 8899999864   359999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC-CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD-QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~-~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      ||+. |++|+||+|+||+++.++.  ++|+|||.+........ .....+++.|+|||.+..      ..++.++|+||+
T Consensus       135 lH~~-~i~H~dl~p~Nil~~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~Di~sl  205 (303)
T 3a7i_A          135 LHSE-KKIHRDIKAANVLLSEHGE--VKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQ------SAYDSKADIWSL  205 (303)
T ss_dssp             HHHT-TEECCCCSGGGEEECTTSC--EEECCCTTCEECBTTBCCBCCCCSCGGGCCHHHHTT------CCBCTHHHHHHH
T ss_pred             HHHC-CCccCCCChheEEECCCCC--EEEeecccceecCccccccCccCCCcCccCHHHHhc------CCCCchhhhHHH
Confidence            9996 9999999999999988876  99999999987654332 234578999999999973      347789999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCC
Q psy320          162 KMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      |+..+      .+..|.++|.
T Consensus       206 G~il~------~l~~g~~p~~  220 (303)
T 3a7i_A          206 GITAI------ELARGEPPHS  220 (303)
T ss_dssp             HHHHH------HHHHSSCTTT
T ss_pred             HHHHH------HHccCCCCCC
Confidence            86332      4455666654

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.95  E-value=3.6e-27  Score=182.01  Aligned_cols=159  Identities=13%  Similarity=0.142  Sum_probs=125.1

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ....+|+++++.++ |+  +++..+..+..   .+...++||||++++|.+++.... +.+++..+..++.|++.||.||
T Consensus        49 ~~~~~e~~~l~~l~-~~--~~i~~~~~~~~---~~~~~~lv~e~~~~~L~~~~~~~~-~~~~~~~~~~i~~qi~~~l~~l  121 (296)
T 3uzp_A           49 PQLHIESKIYKMMQ-GG--VGIPTIRWCGA---EGDYNVMVMELLGPSLEDLFNFCS-RKFSLKTVLLLADQMISRIEYI  121 (296)
T ss_dssp             CHHHHHHHHHHHHT-TS--TTCCCEEEEEE---ETTEEEEEEECCCCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhh-cC--CCCCccccccC---CCCceEEEEEecCCCHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHH
Confidence            34678999999995 43  54444455443   456889999999999999997543 4699999999999999999999


Q ss_pred             HhhCCccccCCCCCceeee---cCCcceeEEeecccccccccccC--------CCCCCCCccchhhHHHHhhhhccCCCC
Q psy320           84 HTKHNLVHTSIKPESIFFK---ADHVYIMTLINIQQATTHQECHD--------QQSSSKTKSKIFCEILEQCRLNQDFRL  152 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~---~~~~~~~~l~Dfg~a~~~~~~~~--------~~~~~~~~~~~ape~~~~~~~~~~~~~  152 (202)
                      |+. |++|+||||+||+++   .++.  +||+|||.+........        .....+++.|+|||.+...      .+
T Consensus       122 H~~-~ivH~dlkp~NIl~~~~~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~  192 (296)
T 3uzp_A          122 HSK-NFIHRDVKPDNFLMGLGKKGNL--VYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGI------EQ  192 (296)
T ss_dssp             HHT-TEECSCCCGGGEEECCGGGTTC--EEECCCTTCEECBCTTTCCBCCCCCSCCCCSCTTTCCHHHHTTC------CC
T ss_pred             HhC-CeeeCCCCHHHeEEecCCCCCe--EEEeeCCCcccccccccccccccccccccccccccCChhhhcCC------CC
Confidence            996 999999999999995   4444  99999999987654322        1245789999999998843      37


Q ss_pred             CCCcchhhHHHHHHHHHHHHHHHhcCCCCCCC
Q psy320          153 DPRVDPTSIKMYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       153 ~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      +.++|+||+|+..      -.+..|..+|...
T Consensus       193 ~~~~Di~slG~il------~~l~~g~~pf~~~  218 (296)
T 3uzp_A          193 SRRDDLESLGYVL------MYFNLGSLPWQGL  218 (296)
T ss_dssp             CHHHHHHHHHHHH------HHHHHSSCTTSSC
T ss_pred             CcchhhHHHHHHH------HHHHhCCCCCCCc
Confidence            7899999999733      3566688888753

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.95  E-value=1e-27  Score=188.26  Aligned_cols=150  Identities=15%  Similarity=0.169  Sum_probs=113.2

Q ss_pred             HHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q psy320            8 NLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTK   86 (202)
Q Consensus         8 ~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~   86 (202)
                      +|.+++..+ ...||||+++++++..........++||||+ +++|.+++...   ++++..+..++.|++.||.|||+ 
T Consensus        78 ~e~~~~~~~-~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~~i~~~l~~lH~-  152 (337)
T 3mdy_A           78 RETEIYQTV-LMRHENILGFIAADIKGTGSWTQLYLITDYHENGSLYDYLKST---TLDAKSMLKLAYSSVSGLCHLHT-  152 (337)
T ss_dssp             HHHHHHTST-TCCCTTBCCEEEEEEESCGGGCEEEEEECCCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHS-
T ss_pred             hHHHHHHHH-hhcCCCeeeEEEEEccCCCCCCceEEEEeccCCCcHHHHhhcc---CCCHHHHHHHHHHHHHHHHHHHH-
Confidence            344444433 2236699999999986443347899999999 88999999764   49999999999999999999998 


Q ss_pred             C--------CccccCCCCCceeeecCCcceeEEeecccccccccccCC-----CCCCCCccchhhHHHHhhhhccCCCCC
Q psy320           87 H--------NLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ-----QSSSKTKSKIFCEILEQCRLNQDFRLD  153 (202)
Q Consensus        87 ~--------~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~-----~~~~~~~~~~ape~~~~~~~~~~~~~~  153 (202)
                      .        |++||||||+|||++.++.  +||+|||.+.........     ....+++.|+|||.+..........++
T Consensus       153 ~~~~~~~~~~ivH~Dikp~Nill~~~~~--~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~  230 (337)
T 3mdy_A          153 EIFSTQGKPAIAHRDLKSKNILVKKNGT--CCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSY  230 (337)
T ss_dssp             CBCSTTCBCCEECSCCCGGGEEECTTSC--EEECCCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHH
T ss_pred             hhhhhccCCCEEecccchHHEEECCCCC--EEEEeCCCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCc
Confidence            5        9999999999999998876  999999999776443221     134789999999999844311111111


Q ss_pred             CCcchhhHHHH
Q psy320          154 PRVDPTSIKMY  164 (202)
Q Consensus       154 ~~~Diwsl~~~  164 (202)
                      .++|+||+|+.
T Consensus       231 ~~~DiwslG~i  241 (337)
T 3mdy_A          231 IMADMYSFGLI  241 (337)
T ss_dssp             HHHHHHHHHHH
T ss_pred             cccchHHHHHH
Confidence            24899999873

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.95  E-value=8.2e-28  Score=187.89  Aligned_cols=143  Identities=18%  Similarity=0.244  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+++++++ +||  ||+++++++...+  ....++||||+ +++|.+++...   ++++..+..++.|++.||.||
T Consensus        79 ~~~~E~~~l~~l-~h~--~iv~~~~~~~~~~--~~~~~lv~e~~~~~~L~~~l~~~---~~~~~~~~~i~~~l~~~l~~L  150 (318)
T 3lxp_A           79 GWKQEIDILRTL-YHE--HIIKYKGCCEDAG--AASLQLVMEYVPLGSLRDYLPRH---SIGLAQLLLFAQQICEGMAYL  150 (318)
T ss_dssp             HHHHHHHHHHHC-CCT--TBCCEEEEEEETT--TTEEEEEECCCTTCBHHHHGGGS---CCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCc--chhhEEEEEecCC--CceEEEEEecccCCcHHHHHhhC---CCCHHHHHHHHHHHHHHHHHH
Confidence            456789999988 455  9999999998532  46899999999 88999998764   399999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC----CCCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD----QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~----~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      |+. |++|+||||+||+++.++.  ++|+|||.+........    .....++..|+|||.+....      ++.++|+|
T Consensus       151 H~~-~ivH~Dikp~Nil~~~~~~--~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~------~~~~~Di~  221 (318)
T 3lxp_A          151 HAQ-HYIHRDLAARNVLLDNDRL--VKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLKEYK------FYYASDVW  221 (318)
T ss_dssp             HHT-TEECSCCSGGGEEECTTCC--EEECCGGGCEECCTTCSEEEC---CCCCGGGCCHHHHHHCE------EEHHHHHH
T ss_pred             HhC-CccCCCCchheEEEcCCCC--EEECCccccccccccccccccccCCCCCceeeChHHhcCCC------CCcHHHHH
Confidence            996 9999999999999998876  99999999987654321    22346778899999998544      66799999


Q ss_pred             hHHHH
Q psy320          160 SIKMY  164 (202)
Q Consensus       160 sl~~~  164 (202)
                      |+|+.
T Consensus       222 slG~i  226 (318)
T 3lxp_A          222 SFGVT  226 (318)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99863

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.95  E-value=2.9e-27  Score=186.70  Aligned_cols=160  Identities=23%  Similarity=0.316  Sum_probs=127.5

Q ss_pred             hHHHHHHHHHHHHhcCC---CccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHP---SDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGL   80 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~---h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l   80 (202)
                      ....+|+++++.++...   +.+++.+.+++..    ....|+||||+++++.+.+.....+++++..++.++.|++.||
T Consensus        61 ~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~----~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L  136 (355)
T 2eu9_A           61 EAARLEINVLKKIKEKDKENKFLCVLMSDWFNF----HGHMCIAFELLGKNTFEFLKENNFQPYPLPHVRHMAYQLCHAL  136 (355)
T ss_dssp             HHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEE----TTEEEEEEECCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcCCCCceeEEEeeeeeee----CCeEEEEEeccCCChHHHHHhccCCCCCHHHHHHHHHHHHHHH
Confidence            34567889999885322   3358999999984    5699999999988888888776656799999999999999999


Q ss_pred             HHHHhhCCccccCCCCCceeee-------------------cCCcceeEEeecccccccccccCCCCCCCCccchhhHHH
Q psy320           81 NHLHTKHNLVHTSIKPESIFFK-------------------ADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEIL  141 (202)
Q Consensus        81 ~~lh~~~~ivH~dl~p~nil~~-------------------~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~  141 (202)
                      .|||+. |++||||||+|||+.                   .++.  +||+|||.++....  ......+++.|+|||++
T Consensus       137 ~~lH~~-~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~--~kl~Dfg~~~~~~~--~~~~~~gt~~y~aPE~~  211 (355)
T 2eu9_A          137 RFLHEN-QLTHTDLKPENILFVNSEFETLYNEHKSCEEKSVKNTS--IRVADFGSATFDHE--HHTTIVATRHYRPPEVI  211 (355)
T ss_dssp             HHHHTT-TEECCCCCGGGEEESCCCEEEEECCC-CCCEEEESCCC--EEECCCTTCEETTS--CCCSSCSCGGGCCHHHH
T ss_pred             HHHHHC-CcccCCCCHHHEEEecccccccccccccccccccCCCc--EEEeecCccccccc--cccCCcCCCcccCCeee
Confidence            999996 999999999999993                   3444  99999999986532  22345789999999999


Q ss_pred             HhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCCC
Q psy320          142 EQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       142 ~~~~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      ..      ..++.++|+||+|+.      +..+..|.++|...
T Consensus       212 ~~------~~~~~~~Di~slG~i------l~el~~g~~pf~~~  242 (355)
T 2eu9_A          212 LE------LGWAQPCDVWSIGCI------LFEYYRGFTLFQTH  242 (355)
T ss_dssp             TT------CCCCTHHHHHHHHHH------HHHHHHSSCSCCCS
T ss_pred             ec------CCCCCccchHHHHHH------HHHHHhCCCCCCCC
Confidence            73      347889999999873      33555688887653

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.95  E-value=2.3e-27  Score=185.58  Aligned_cols=143  Identities=17%  Similarity=0.197  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-c-ccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-A-ECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~-~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ..+|+.+++++ +++|+||+++++++.    .....++|+|++ + ++|.+++....  .+++..++.++.|++.||.||
T Consensus        93 ~~~E~~~l~~l-~~~~~~i~~~~~~~~----~~~~~~lv~e~~~~~~~L~~~l~~~~--~l~~~~~~~i~~qi~~~L~~L  165 (320)
T 3a99_A           93 VPMEVVLLKKV-SSGFSGVIRLLDWFE----RPDSFVLILERPEPVQDLFDFITERG--ALQEELARSFFWQVLEAVRHC  165 (320)
T ss_dssp             EEHHHHHHHHH-CSSSCSBCCEEEEEE----CSSEEEEEEECCSSEEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhh-ccCCCCceEEEEEEe----cCCcEEEEEEcCCCCccHHHHHhccC--CCCHHHHHHHHHHHHHHHHHH
Confidence            34689999999 555679999999998    567899999999 3 99999998763  499999999999999999999


Q ss_pred             HhhCCccccCCCCCceeee-cCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFK-ADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~-~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |+. |++||||||+||+++ .++.  +||+|||.+...... ......+++.|+|||.+....     .++.++|+||+|
T Consensus       166 H~~-~ivH~Dlkp~NIll~~~~~~--~kL~Dfg~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~-----~~~~~~Di~slG  236 (320)
T 3a99_A          166 HNC-GVLHRDIKDENILIDLNRGE--LKLIDFGSGALLKDT-VYTDFDGTRVYSPPEWIRYHR-----YHGRSAAVWSLG  236 (320)
T ss_dssp             HHT-TEECCCCSGGGEEEETTTTE--EEECCCTTCEECCSS-CBCCCCSCGGGSCHHHHHHSC-----BCHHHHHHHHHH
T ss_pred             HHC-CcEeCCCCHHHEEEeCCCCC--EEEeeCccccccccc-cccCCCCCccCCChHHhccCC-----CCCccchHHhHH
Confidence            996 999999999999998 4455  999999999876532 223457899999999987433     124588999997


Q ss_pred             HH
Q psy320          163 MY  164 (202)
Q Consensus       163 ~~  164 (202)
                      +.
T Consensus       237 ~i  238 (320)
T 3a99_A          237 IL  238 (320)
T ss_dssp             HH
T ss_pred             HH
Confidence            63

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.95  E-value=2e-27  Score=183.95  Aligned_cols=149  Identities=18%  Similarity=0.253  Sum_probs=117.9

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ..+.+|+++++.+ +||  ||+++++++.    .....++||||+ +++|.+++.... +.+++..+..++.|++.||.|
T Consensus        61 ~~~~~e~~~l~~l-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~i~~~l~~  132 (302)
T 2j7t_A           61 EDYIVEIEILATC-DHP--YIVKLLGAYY----HDGKLWIMIEFCPGGAVDAIMLELD-RGLTEPQIQVVCRQMLEALNF  132 (302)
T ss_dssp             HHHHHHHHHHHHC-CCT--TBCCEEEEEE----CC-CEEEEEECCTTEEHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC-CCC--CEeeeeeeee----eCCeEEEEEEeCCCCcHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHH
Confidence            3456788888888 455  9999999998    566899999999 899999887644 459999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccc-cCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQEC-HDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~-~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      ||+. |++|+||||+||+++.++.  ++|+|||.+...... .......+++.|+|||.+..... ....++.++|+||+
T Consensus       133 lH~~-~i~H~dlkp~Nil~~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-~~~~~~~~~Di~sl  208 (302)
T 2j7t_A          133 LHSK-RIIHRDLKAGNVLMTLEGD--IRLADFGVSAKNLKTLQKRDSFIGTPYWMAPEVVMCETM-KDTPYDYKADIWSL  208 (302)
T ss_dssp             HHHT-TCCCCCCSGGGEEECTTSC--EEECCCHHHHHHHHHHHC-----CCGGGCCHHHHHHHHT-TSTTTTTHHHHHHH
T ss_pred             HhcC-CcccCCCCHHHEEECCCCC--EEEEECCCCccccccccccccccCChhhcCCeeeccccC-CCCCCchhhhHHHH
Confidence            9996 9999999999999998876  999999998654322 22234578999999999864321 13446779999999


Q ss_pred             HHH
Q psy320          162 KMY  164 (202)
Q Consensus       162 ~~~  164 (202)
                      |+.
T Consensus       209 G~i  211 (302)
T 2j7t_A          209 GIT  211 (302)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            863

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.95  E-value=8.4e-28  Score=186.55  Aligned_cols=153  Identities=22%  Similarity=0.291  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++.+ +||  ||+++++++.    .....|+||||+ +++|.+++....  .+++..+..++.|++.||.||
T Consensus        52 ~~~~e~~~l~~l-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~l  122 (304)
T 2jam_A           52 SLENEIAVLKKI-KHE--NIVTLEDIYE----STTHYYLVMQLVSGGELFDRILERG--VYTEKDASLVIQQVLSAVKYL  122 (304)
T ss_dssp             HHHHHHHHHHHC-CCT--TBCCEEEEEE----CSSEEEEEECCCCSCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCC--Ceeehhhhcc----cCCEEEEEEEcCCCccHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHH
Confidence            456788888888 555  9999999998    567999999999 899999987764  499999999999999999999


Q ss_pred             HhhCCccccCCCCCceee---ecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           84 HTKHNLVHTSIKPESIFF---KADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~---~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      |+. |++|+||||+||++   +.++.  ++|+|||.+...... ......+++.|+|||.+..      ..++.++|+||
T Consensus       123 H~~-~i~H~dikp~NIl~~~~~~~~~--~kl~Dfg~~~~~~~~-~~~~~~~~~~y~aPE~~~~------~~~~~~~Di~s  192 (304)
T 2jam_A          123 HEN-GIVHRDLKPENLLYLTPEENSK--IMITDFGLSKMEQNG-IMSTACGTPGYVAPEVLAQ------KPYSKAVDCWS  192 (304)
T ss_dssp             HHT-TCCCCSCCGGGCEESSSSTTCC--EEBCSCSTTCCCCCB-TTHHHHSCCCBCCTTTBSS------CSCCHHHHHHH
T ss_pred             HHC-CccccCCCHHHEEEecCCCCCC--EEEccCCcceecCCC-ccccccCCCCccChHHhcc------CCCCchhhHHH
Confidence            996 99999999999999   44444  999999998765321 1223468899999999873      34778999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCC
Q psy320          161 IKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       161 l~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +|+..+      .+..|.++|.
T Consensus       193 lG~il~------~l~~g~~pf~  208 (304)
T 2jam_A          193 IGVITY------ILLCGYPPFY  208 (304)
T ss_dssp             HHHHHH------HHHHSSCTTT
T ss_pred             HHHHHH------HHHHCCCCCC
Confidence            986322      3444555553

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.95  E-value=4.5e-28  Score=189.34  Aligned_cols=143  Identities=15%  Similarity=0.189  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC--------CCCCCHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK--------FQPAPLVVAKIIVNQI   76 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~--------~~~~~~~~~~~~~~qi   76 (202)
                      +.+|+++++.+ +|  |||+++++++.    .+...++||||+ +++|.+++....        ...+++..+..++.|+
T Consensus        75 ~~~E~~~l~~l-~h--~~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi  147 (322)
T 1p4o_A           75 FLNEASVMKEF-NC--HHVVRLLGVVS----QGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEI  147 (322)
T ss_dssp             HHHHHHHGGGC-CC--TTBCCEEEEEC----SSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc-CC--CCEeeeEEEEc----cCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHH
Confidence            45677777777 44  49999999998    566889999999 889999987632        1347899999999999


Q ss_pred             HHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC---CCCCCCCccchhhHHHHhhhhccCCCCC
Q psy320           77 LEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD---QQSSSKTKSKIFCEILEQCRLNQDFRLD  153 (202)
Q Consensus        77 ~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~ape~~~~~~~~~~~~~~  153 (202)
                      +.||.|||++ |++||||||+||+++.++.  ++|+|||.++.......   .....+++.|+|||.+....      ++
T Consensus       148 ~~~l~~lH~~-~i~H~dikp~NIli~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~------~~  218 (322)
T 1p4o_A          148 ADGMAYLNAN-KFVHRDLAARNCMVAEDFT--VKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGV------FT  218 (322)
T ss_dssp             HHHHHHHHHT-TCBCSCCSGGGEEECTTCC--EEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCC------CC
T ss_pred             HHHHHHHHHC-CCccCCCccceEEEcCCCe--EEECcCccccccccccccccccCCCCCCCccChhhhccCC------CC
Confidence            9999999996 9999999999999998876  99999999987643221   12345678899999987433      77


Q ss_pred             CCcchhhHHHH
Q psy320          154 PRVDPTSIKMY  164 (202)
Q Consensus       154 ~~~Diwsl~~~  164 (202)
                      .++|+||+|+.
T Consensus       219 ~~~Di~slG~i  229 (322)
T 1p4o_A          219 TYSDVWSFGVV  229 (322)
T ss_dssp             HHHHHHHHHHH
T ss_pred             chhhHHHHHHH
Confidence            79999999863

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.95  E-value=4e-27  Score=193.52  Aligned_cols=156  Identities=12%  Similarity=0.114  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ...+|+++++.++.++  +|..+..++.    .+...++||||++++|.+++.... +.+++..++.++.||+.||.|||
T Consensus        48 ~~~~E~~il~~L~~~~--~i~~i~~~~~----~~~~~~lvme~~g~sL~~ll~~~~-~~l~~~~~~~i~~qi~~aL~yLH  120 (483)
T 3sv0_A           48 QLLYESKIYRILQGGT--GIPNVRWFGV----EGDYNVLVMDLLGPSLEDLFNFCS-RKLSLKTVLMLADQMINRVEFVH  120 (483)
T ss_dssp             CHHHHHHHHHHTTTST--TCCCEEEEEE----ETTEEEEEEECCCCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCC--CCCeEEEEEe----eCCEEEEEEECCCCCHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHH
Confidence            4578999999996444  6666655555    466899999999999999997543 46999999999999999999999


Q ss_pred             hhCCccccCCCCCceeee---cCCcceeEEeecccccccccccCC--------CCCCCCccchhhHHHHhhhhccCCCCC
Q psy320           85 TKHNLVHTSIKPESIFFK---ADHVYIMTLINIQQATTHQECHDQ--------QSSSKTKSKIFCEILEQCRLNQDFRLD  153 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~---~~~~~~~~l~Dfg~a~~~~~~~~~--------~~~~~~~~~~ape~~~~~~~~~~~~~~  153 (202)
                      ++ ||+||||||+|||++   .++.  +||+|||+++........        ....+++.|++||.+...      .++
T Consensus       121 ~~-gIvHrDIKP~NILl~~~~~~~~--vkL~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~------~~s  191 (483)
T 3sv0_A          121 SK-SFLHRDIKPDNFLMGLGRRANQ--VYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASVNTHLGI------EQS  191 (483)
T ss_dssp             HT-TEECCCCCGGGEEECCGGGTTC--EEECCCTTCEECBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTC------CCC
T ss_pred             HC-CEeecccCcceEEEecCCCCCe--EEEEeCCcceeccCCccccccccccccccCCCccccCHHHhcCC------CCC
Confidence            96 999999999999994   4444  999999999876543221        145799999999999843      377


Q ss_pred             CCcchhhHHHHHHHHHHHHHHHhcCCCCC
Q psy320          154 PRVDPTSIKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       154 ~~~Diwsl~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      .++|+||+|+..+      .++.|..+|.
T Consensus       192 ~~sDvwSlGvil~------elltG~~Pf~  214 (483)
T 3sv0_A          192 RRDDLESLGYVLM------YFLRGSLPWQ  214 (483)
T ss_dssp             HHHHHHHHHHHHH------HHHHSSCTTS
T ss_pred             hHHHHHHHHHHHH------HHHhCCCCCc
Confidence            8999999986332      3334555554

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.95  E-value=4.8e-27  Score=181.20  Aligned_cols=147  Identities=17%  Similarity=0.194  Sum_probs=118.3

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK-FQPAPLVVAKIIVNQILEGLN   81 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~-~~~~~~~~~~~~~~qi~~~l~   81 (202)
                      +...+|+..++.+ +||  ||+++++++.    .....++||||+ +++|.+++.... ...+++..+..++.|++.||.
T Consensus        64 ~~~~~e~~~l~~l-~h~--~iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~  136 (295)
T 2clq_A           64 QPLHEEIALHKHL-KHK--NIVQYLGSFS----ENGFIKIFMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLK  136 (295)
T ss_dssp             HHHHHHHHHHHTC-CCT--TBCCEEEEEE----ETTEEEEEEECCSEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CEeeEeeEEE----eCCcEEEEEEeCCCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHH
Confidence            3456788888877 455  9999999998    456899999999 999999998753 224678999999999999999


Q ss_pred             HHHhhCCccccCCCCCceeeec-CCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           82 HLHTKHNLVHTSIKPESIFFKA-DHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        82 ~lh~~~~ivH~dl~p~nil~~~-~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      |||+. |++|+||||+||+++. ++.  ++|+|||.+....... ......+++.|+|||.+....    ..++.++|+|
T Consensus       137 ~lH~~-~i~H~dl~p~Nil~~~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~----~~~~~~~Di~  209 (295)
T 2clq_A          137 YLHDN-QIVHRDIKGDNVLINTYSGV--LKISDFGTSKRLAGINPCTETFTGTLQYMAPEIIDKGP----RGYGKAADIW  209 (295)
T ss_dssp             HHHHT-TEECCCCSGGGEEEETTTCC--EEECCTTTCEESCC-----CCCCCCGGGCCHHHHHHGG----GGCSHHHHHH
T ss_pred             HHHhC-CEEccCCChhhEEEECCCCC--EEEeecccccccCCCCCcccccCCCccccChhhhcCCC----CCCCcHHHHH
Confidence            99996 9999999999999987 555  9999999998764322 223457899999999997532    2356799999


Q ss_pred             hHHHH
Q psy320          160 SIKMY  164 (202)
Q Consensus       160 sl~~~  164 (202)
                      |+|+.
T Consensus       210 slG~i  214 (295)
T 2clq_A          210 SLGCT  214 (295)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99863

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.95  E-value=2.6e-27  Score=187.19  Aligned_cols=160  Identities=17%  Similarity=0.166  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEec-CCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTG-INGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~-~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++.+ +||  ||+++++++.... ......|+||||++++|.+++...   .+++..+..++.|++.||.||
T Consensus        55 ~~~~E~~~l~~l-~h~--~iv~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~~~~~---~~~~~~~~~~~~qi~~~L~~L  128 (353)
T 2b9h_A           55 RTLREIKILKHF-KHE--NIITIFNIQRPDSFENFNEVYIIQELMQTDLHRVISTQ---MLSDDHIQYFIYQTLRAVKVL  128 (353)
T ss_dssp             HHHHHHHHHHHC-CCT--TBCCEEEECCCSCSTTCCCEEEEECCCSEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-cCC--CcCCeeeeecccccCccceEEEEEeccCccHHHHHhhc---CCCHHHHHHHHHHHHHHHHHH
Confidence            345788888888 455  9999999887421 123689999999988999998763   499999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC-----------CCCCCCCccchhhHHHHhhhhccCCCC
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD-----------QQSSSKTKSKIFCEILEQCRLNQDFRL  152 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~-----------~~~~~~~~~~~ape~~~~~~~~~~~~~  152 (202)
                      |+. |++||||||+||+++.++.  ++|+|||.+........           .....+++.|+|||.+..     ...+
T Consensus       129 H~~-~ivH~Dlkp~Nil~~~~~~--~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~  200 (353)
T 2b9h_A          129 HGS-NVIHRDLKPSNLLINSNCD--LKVCDFGLARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLT-----SAKY  200 (353)
T ss_dssp             HHT-TEECSCCCGGGEEECTTCC--EEECCCTTCEECC----------------CCCCCCGGGCCHHHHHS-----CCCC
T ss_pred             HHC-CeecCCCCHHHeEEcCCCc--EEEEecccccccccccccccCccccccchhhccccccccCCeeecc-----CCCc
Confidence            996 9999999999999998876  99999999987643211           112468999999999862     2346


Q ss_pred             CCCcchhhHHHHHHHHHHHHHHHhcCCCCCCC
Q psy320          153 DPRVDPTSIKMYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       153 ~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      +.++|+||+|+..      ..+..|.++|...
T Consensus       201 ~~~~Di~slG~il------~~l~~g~~pf~~~  226 (353)
T 2b9h_A          201 SRAMDVWSCGCIL------AELFLRRPIFPGR  226 (353)
T ss_dssp             CHHHHHHHHHHHH------HHHHHSSCSCCCS
T ss_pred             cchhhHHHHHHHH------HHHHhCCCCCCCC
Confidence            7799999998732      2455687777543

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.95  E-value=4.3e-27  Score=183.26  Aligned_cols=161  Identities=20%  Similarity=0.240  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ...+|++.+.+++ |.|+||+++++++.    .....++|||+.+++|.+++....  .+++..+..++.|++.||.|||
T Consensus        72 ~~~~E~~~l~~l~-~~~~~iv~~~~~~~----~~~~~~lv~e~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~aL~~LH  144 (313)
T 3cek_A           72 SYRNEIAYLNKLQ-QHSDKIIRLYDYEI----TDQYIYMVMECGNIDLNSWLKKKK--SIDPWERKSYWKNMLEAVHTIH  144 (313)
T ss_dssp             HHHHHHHHHHHHG-GGCTTBCCEEEEEE----CSSEEEEEECCCSEEHHHHHHHCS--SCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc-ccCCceEEEEEEee----cCCEEEEEEecCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHH
Confidence            4567999999995 43569999999998    567899999977999999998763  5999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccC---CCCCCCCccchhhHHHHhhhhc-----cCCCCCCCc
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD---QQSSSKTKSKIFCEILEQCRLN-----QDFRLDPRV  156 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~ape~~~~~~~~-----~~~~~~~~~  156 (202)
                      +. |++|+||||+||+++. +  .+||+|||.+........   .....+++.|+|||.+......     ....++.++
T Consensus       145 ~~-~ivH~dlkp~NIl~~~-~--~~kL~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~  220 (313)
T 3cek_A          145 QH-GIVHSDLKPANFLIVD-G--MLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKS  220 (313)
T ss_dssp             HT-TCCCCCCCGGGEEEET-T--EEEECCCSSSCC--------------CCGGGCCHHHHTTCC----------CCCHHH
T ss_pred             HC-CceecCCCcccEEEEC-C--eEEEeeccccccccCccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchH
Confidence            96 9999999999999964 4  499999999987654322   1234689999999998742110     113466799


Q ss_pred             chhhHHHHHHHHHHHHHHHhcCCCCC
Q psy320          157 DPTSIKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       157 Diwsl~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      |+||+|+..+      .+..|..+|.
T Consensus       221 Di~slG~il~------el~~g~~pf~  240 (313)
T 3cek_A          221 DVWSLGCILY------YMTYGKTPFQ  240 (313)
T ss_dssp             HHHHHHHHHH------HHHHSSCTTT
T ss_pred             HHHHHHHHHH------HHHhCCCchh
Confidence            9999986322      3444655554

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.95  E-value=5.1e-28  Score=185.47  Aligned_cols=156  Identities=12%  Similarity=0.157  Sum_probs=123.9

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ....+|+++++.+ +||  ||+++++++.     ....++||||+ +++|.+++.......+++..+..++.|++.||.|
T Consensus        53 ~~~~~E~~~l~~l-~h~--~i~~~~~~~~-----~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~  124 (279)
T 1qpc_A           53 DAFLAEANLMKQL-QHQ--RLVRLYAVVT-----QEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAF  124 (279)
T ss_dssp             HHHHHHHHHHHHC-CCT--TBCCEEEEEC-----SSSCEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCc--CcceEEEEEc-----CCCcEEEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            4567899999988 555  9999999986     33588999999 8999999875432359999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC--CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD--QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~--~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      ||+. |++|+||||+||+++.++.  ++|+|||.+........  .....++..|+|||.+....      ++.++|+||
T Consensus       125 lH~~-~i~H~dikp~Nil~~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~------~~~~~Di~s  195 (279)
T 1qpc_A          125 IEER-NYIHRDLRAANILVSDTLS--CKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGT------FTIKSDVWS  195 (279)
T ss_dssp             HHHT-TEECSCCSGGGEEECTTSC--EEECCCTTCEECSSSCEECCTTCCCCTTTSCHHHHHHCE------ECHHHHHHH
T ss_pred             HHHC-CeeccCCCHhhEEEcCCCC--EEECCCcccccccCcccccccCCCCccCccChhhhccCC------CCchhhhHH
Confidence            9996 9999999999999988776  99999999987653221  12345677899999997443      677999999


Q ss_pred             HHHHHHHHHHHHHHHh-cCCCCC
Q psy320          161 IKMYTTFCEILEQCRL-NHQDFR  182 (202)
Q Consensus       161 l~~~~~~~~~~~~~~~-~~~~~~  182 (202)
                      +|+..+      .+.. |..+|.
T Consensus       196 lG~il~------el~~~g~~p~~  212 (279)
T 1qpc_A          196 FGILLT------EIVTHGRIPYP  212 (279)
T ss_dssp             HHHHHH------HHHTTTCCSST
T ss_pred             HHHHHH------HHHhCCCCCCc
Confidence            987322      3443 666664

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.95  E-value=1.6e-27  Score=183.90  Aligned_cols=154  Identities=11%  Similarity=0.156  Sum_probs=121.9

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++.+ +||  ||+++++++.     ....++||||+ +++|.+++...  +.+++..+..++.|++.||.||
T Consensus        64 ~~~~e~~~l~~l-~h~--~i~~~~~~~~-----~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~i~~qi~~~l~~L  133 (291)
T 1xbb_A           64 ELLAEANVMQQL-DNP--YIVRMIGICE-----AESWMLVMEMAELGPLNKYLQQN--RHVKDKNIIELVHQVSMGMKYL  133 (291)
T ss_dssp             HHHHHHHHHHTC-CCT--TBCCEEEEEE-----SSSEEEEEECCTTEEHHHHHHHC--TTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCC--CEEEEEEEEC-----CCCcEEEEEeCCCCCHHHHHHhC--cCCCHHHHHHHHHHHHHHHHHH
Confidence            455788888887 455  9999999984     34678999999 89999999875  3499999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC----CCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ----QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~----~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      |+. |++|+||||+||+++.++.  ++|+|||.+.........    ....+++.|+|||.+....      ++.++|+|
T Consensus       134 H~~-~i~H~dikp~Nil~~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~------~~~~~Di~  204 (291)
T 1xbb_A          134 EES-NFVHRDLAARNVLLVTQHY--AKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYK------FSSKSDVW  204 (291)
T ss_dssp             HHT-TEECSCCSGGGEEEEETTE--EEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHHHCE------EEHHHHHH
T ss_pred             HhC-CeEcCCCCcceEEEeCCCc--EEEccCCcceeeccCCCcccccccCCCCceeeChHHhccCC------CChhhhHH
Confidence            996 9999999999999998876  999999999876433221    1234668899999997443      66799999


Q ss_pred             hHHHHHHHHHHHHHHHh-cCCCCCC
Q psy320          160 SIKMYTTFCEILEQCRL-NHQDFRP  183 (202)
Q Consensus       160 sl~~~~~~~~~~~~~~~-~~~~~~~  183 (202)
                      |+|+..+      .+.. |..+|..
T Consensus       205 slG~il~------~l~~~g~~p~~~  223 (291)
T 1xbb_A          205 SFGVLMW------EAFSYGQKPYRG  223 (291)
T ss_dssp             HHHHHHH------HHHTTTCCSSTT
T ss_pred             HHHHHHH------HHHhcCCCCCCC
Confidence            9986322      4444 6666643

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.95  E-value=2.5e-27  Score=183.09  Aligned_cols=147  Identities=15%  Similarity=0.207  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEec---------CCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTG---------INGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVN   74 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~---------~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~   74 (202)
                      ...+|+++++.+ +|  |||+++++++....         ......|+||||+ +++|.+++.... ..+++..++.++.
T Consensus        48 ~~~~E~~~l~~l-~h--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~  123 (303)
T 1zy4_A           48 TILSEVMLLASL-NH--QYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSEN-LNQQRDEYWRLFR  123 (303)
T ss_dssp             HHHHHHHHHTTC-CC--TTBCCEEEEEEECCCCCC------CEEEEEEEEECCCSCBHHHHHHHSC-GGGCHHHHHHHHH
T ss_pred             HHHHHHHHHHhc-Cc--hHHHHHHHHHHhhcchhhhhcccccCCceEEEEecCCCCCHHHhhhccc-cccchHHHHHHHH
Confidence            345677777777 45  49999999986421         1357899999999 889999997653 3588899999999


Q ss_pred             HHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc---------------CCCCCCCCccchhhH
Q psy320           75 QILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH---------------DQQSSSKTKSKIFCE  139 (202)
Q Consensus        75 qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~---------------~~~~~~~~~~~~ape  139 (202)
                      |++.||.|||+. |++|+||||+||+++.++.  ++|+|||.+.......               ......+++.|+|||
T Consensus       124 qi~~~l~~LH~~-~i~H~dlkp~Nil~~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE  200 (303)
T 1zy4_A          124 QILEALSYIHSQ-GIIHRDLKPMNIFIDESRN--VKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATE  200 (303)
T ss_dssp             HHHHHHHHHHHT-TCCCSCCCGGGEEECTTSC--EEECCCCCCSCTTC-------------------------CTTSCHH
T ss_pred             HHHHHHHHHHhC-CeecccCCHHhEEEcCCCC--EEEeeCcchhhcccccchhccccccccccccccccCCCcccccCcc
Confidence            999999999996 9999999999999988876  9999999998754211               112346888999999


Q ss_pred             HHHhhhhccCCCCCCCcchhhHHH
Q psy320          140 ILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus       140 ~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      .+..     ...++.++|+||+|+
T Consensus       201 ~~~~-----~~~~~~~~Di~slG~  219 (303)
T 1zy4_A          201 VLDG-----TGHYNEKIDMYSLGI  219 (303)
T ss_dssp             HHTS-----CSCCCTHHHHHHHHH
T ss_pred             cccC-----CCCCcchhhHHHHHH
Confidence            9872     224678999999975

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.95  E-value=1.7e-27  Score=187.42  Aligned_cols=153  Identities=15%  Similarity=0.177  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|++++..+ ...||||+++++++..........++||||+ +++|.+++.+.   ++++..+..++.|++.||.||
T Consensus        80 ~~~~e~~~~~~~-~l~h~ni~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~---~~~~~~~~~i~~~i~~~l~~l  155 (342)
T 1b6c_B           80 SWFREAEIYQTV-MLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHL  155 (342)
T ss_dssp             HHHHHHHHHHHS-CCCCTTBCCEEEEEECCCSSCCCEEEEECCCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-hcCCCcEEEEEeeecccCCccceeEEEEeecCCCcHHHHHhcc---CccHHHHHHHHHHHHHHHHHH
Confidence            345677777774 2235599999999985332334899999999 88999999764   499999999999999999999


Q ss_pred             H--------hhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-----CCCCCCCCccchhhHHHHhhhhccCC
Q psy320           84 H--------TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-----DQQSSSKTKSKIFCEILEQCRLNQDF  150 (202)
Q Consensus        84 h--------~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-----~~~~~~~~~~~~ape~~~~~~~~~~~  150 (202)
                      |        +. |++|+||||+||+++.++.  ++|+|||.+.......     ......+++.|+|||.+.........
T Consensus       156 H~~~~~~~~~~-~ivH~Dlkp~NIll~~~~~--~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~  232 (342)
T 1b6c_B          156 HMEIVGTQGKP-AIAHRDLKSKNILVKKNGT--CCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHF  232 (342)
T ss_dssp             HCCBCSTTCBC-EEECSCCSGGGEEECTTSC--EEECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCH
T ss_pred             HHHHhhhcccC-CeeeCCCCHHHEEECCCCC--EEEEECCCceeccccccccccccccCCcCcccCCHhhhccccccccc
Confidence            9        75 9999999999999998876  9999999998765432     22345789999999998743211111


Q ss_pred             CCCCCcchhhHHHH
Q psy320          151 RLDPRVDPTSIKMY  164 (202)
Q Consensus       151 ~~~~~~Diwsl~~~  164 (202)
                      .++.++|+||+|+.
T Consensus       233 ~~~~~~Di~slG~i  246 (342)
T 1b6c_B          233 ESFKRADIYAMGLV  246 (342)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             ccCCcccHHHHHHH
Confidence            23358999999873

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.95  E-value=2.6e-27  Score=183.59  Aligned_cols=147  Identities=18%  Similarity=0.202  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ...+|++.++.+ +|  |||+++++++...  +....|+||||+.++|.+++.....+.+++..+..++.|++.||.|||
T Consensus        52 ~~~~E~~~l~~l-~h--~~i~~~~~~~~~~--~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH  126 (305)
T 2wtk_C           52 NVKKEIQLLRRL-RH--KNVIQLVDVLYNE--EKQKMYMVMEYCVCGMQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLH  126 (305)
T ss_dssp             HHHHHHHHHTTC-CC--TTBCCEEEEEECC-----CEEEEEECCSEEHHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc-CC--CCeeEEEEEEEcC--CCCeEEEEehhccCCHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHH
Confidence            345677777777 44  5999999998521  355889999999666888887766667999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeeccccccccccc---CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH---DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~---~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      ++ |++|+||||+||+++.++.  ++|+|||.+.......   ......+++.|+|||.+....    ..++.++|+||+
T Consensus       127 ~~-~i~H~dlkp~NIl~~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~----~~~~~~~Di~sl  199 (305)
T 2wtk_C          127 SQ-GIVHKDIKPGNLLLTTGGT--LKISALGVAEALHPFAADDTCRTSQGSPAFQPPEIANGLD----TFSGFKVDIWSA  199 (305)
T ss_dssp             HT-TEECSCCSGGGEEECTTCC--EEECCCTTCEECCTTCSSCEECCCCSCGGGCCHHHHTCCS----CEESHHHHHHHH
T ss_pred             HC-CeeecCCCcccEEEcCCCc--EEeeccccccccCccccccccccCCCCCCCcChhhccCcc----cCCcchhhHHHH
Confidence            96 9999999999999998876  9999999998764321   122456899999999987322    113558999999


Q ss_pred             HH
Q psy320          162 KM  163 (202)
Q Consensus       162 ~~  163 (202)
                      |+
T Consensus       200 G~  201 (305)
T 2wtk_C          200 GV  201 (305)
T ss_dssp             HH
T ss_pred             HH
Confidence            76

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.95  E-value=2.1e-27  Score=193.15  Aligned_cols=166  Identities=17%  Similarity=0.206  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCC-----CCHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQP-----APLVVAKIIVNQILEG   79 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~-----~~~~~~~~~~~qi~~~   79 (202)
                      .+.+|+++++++.+||  ||+++++++.    ++...|+||||++++|.+++.......     .++..+..++.|++.|
T Consensus        54 ~~~~E~~~l~~l~~Hp--nIv~~~~~~~----~~~~~~lv~E~~~gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~a  127 (434)
T 2rio_A           54 IALMEIKLLTESDDHP--NVIRYYCSET----TDRFLYIALELCNLNLQDLVESKNVSDENLKLQKEYNPISLLRQIASG  127 (434)
T ss_dssp             HHHHHHHHHHHHTTST--TBCCEEEEEE----CSSEEEEEECCCSEEHHHHHHTC------------CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCC--CcCeEEEEEe----cCCeEEEEEecCCCCHHHHHhccCCCchhhhhccchhHHHHHHHHHHH
Confidence            4567899888875566  9999999998    677999999999889999997653211     1223456799999999


Q ss_pred             HHHHHhhCCccccCCCCCceeeecCC-----------cceeEEeecccccccccccCC-----CCCCCCccchhhHHHHh
Q psy320           80 LNHLHTKHNLVHTSIKPESIFFKADH-----------VYIMTLINIQQATTHQECHDQ-----QSSSKTKSKIFCEILEQ  143 (202)
Q Consensus        80 l~~lh~~~~ivH~dl~p~nil~~~~~-----------~~~~~l~Dfg~a~~~~~~~~~-----~~~~~~~~~~ape~~~~  143 (202)
                      |.|||+. ||+||||||+|||++.++           ...+||+|||+++........     ....+|+.|+|||++..
T Consensus       128 L~~LH~~-~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~  206 (434)
T 2rio_A          128 VAHLHSL-KIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEE  206 (434)
T ss_dssp             HHHHHHT-TEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEECCCTTCEECCC--------------CCTTSCHHHHSC
T ss_pred             HHHHHHC-CccccCCChHhEEEecCcccccccccCCCceEEEEcccccceecCCCCccceeeecCCCCCCCccCHHHhcc
Confidence            9999996 999999999999998643           235999999999876543211     13479999999999974


Q ss_pred             hhh-ccCCCCCCCcchhhHHHHHHHHHHHHHHHh-cCCCCCC
Q psy320          144 CRL-NQDFRLDPRVDPTSIKMYTTFCEILEQCRL-NHQDFRP  183 (202)
Q Consensus       144 ~~~-~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~-~~~~~~~  183 (202)
                      ... .....++.++|+||+|+.      +-.+.. |..+|..
T Consensus       207 ~~~~~~~~~~~~~~DiwSlG~i------l~ellt~g~~Pf~~  242 (434)
T 2rio_A          207 SNNLQTKRRLTRSIDIFSMGCV------FYYILSKGKHPFGD  242 (434)
T ss_dssp             CCTTSCCCCCCTHHHHHHHHHH------HHHHHTTSCCTTCS
T ss_pred             ccccccccCcchhhhhHhHHHH------HHHHHhCCCCCCCC
Confidence            210 012446789999999973      224444 7777753

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.95  E-value=4.4e-28  Score=185.82  Aligned_cols=157  Identities=14%  Similarity=0.148  Sum_probs=117.8

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +.+.+|++.++++ +||  ||+++++++..   .....++||||+ +++|.+++.......+++..+..++.|++.||.|
T Consensus        59 ~~~~~E~~~l~~l-~h~--~iv~~~~~~~~---~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~  132 (278)
T 1byg_A           59 QAFLAEASVMTQL-RHS--NLVQLLGVIVE---EKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEY  132 (278)
T ss_dssp             HHHHHTHHHHTTC-CCT--TBCCEEEEECC---C--CCEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CEeeEEEEEEc---CCCceEEEEecCCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence            3456788888877 455  99999999763   334789999999 8899999986543348899999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      ||+. |++|+||||+||+++.++.  ++|+|||.+......  .....+++.|+|||.+...      .++.++|+||+|
T Consensus       133 lH~~-~i~H~dlkp~Nil~~~~~~--~~l~Dfg~~~~~~~~--~~~~~~~~~y~aPE~~~~~------~~~~~~Di~slG  201 (278)
T 1byg_A          133 LEGN-NFVHRDLAARNVLVSEDNV--AKVSDFGLTKEASST--QDTGKLPVKWTAPEALREK------KFSTKSDVWSFG  201 (278)
T ss_dssp             HHHT-TCCCSCCSGGGEEECTTSC--EEECCCCC--------------CCTTTSCHHHHHHC------CCCHHHHHHHHH
T ss_pred             HHhC-CccccCCCcceEEEeCCCc--EEEeecccccccccc--ccCCCccccccCHHHhCCC------CCCchhcHHHHH
Confidence            9996 9999999999999998776  999999998865432  2234567889999999743      377799999998


Q ss_pred             HHHHHHHHHHHHHh-cCCCCCC
Q psy320          163 MYTTFCEILEQCRL-NHQDFRP  183 (202)
Q Consensus       163 ~~~~~~~~~~~~~~-~~~~~~~  183 (202)
                      +..      ..+.. |.++|..
T Consensus       202 ~il------~~l~t~g~~p~~~  217 (278)
T 1byg_A          202 ILL------WEIYSFGRVPYPR  217 (278)
T ss_dssp             HHH------HHHHTTSCCSCTT
T ss_pred             HHH------HHHHhCCCCCCCC
Confidence            732      24444 7777653

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.95  E-value=9.5e-28  Score=187.11  Aligned_cols=162  Identities=15%  Similarity=0.114  Sum_probs=125.4

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHc--CCCCCCHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQ--KFQPAPLVVAKIIVNQILEGLN   81 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~--~~~~~~~~~~~~~~~qi~~~l~   81 (202)
                      .+.+|+++++.+ +||  ||+++++++..........++||||+ +++|.+++...  ..+.+++..++.++.|++.||.
T Consensus        72 ~~~~E~~~l~~l-~h~--~iv~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~  148 (317)
T 2buj_A           72 EAQREADMHRLF-NHP--NILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLE  148 (317)
T ss_dssp             HHHHHHHHHHTC-CCT--TBCCCCEEEEEEETTEEEEEEEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhc-CCC--CeeeEEEEEEeccCCCceeEEEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence            456788888777 455  99999999986544567899999999 88999998763  2356999999999999999999


Q ss_pred             HHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC----------CCCCCCccchhhHHHHhhhhccCCC
Q psy320           82 HLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ----------QSSSKTKSKIFCEILEQCRLNQDFR  151 (202)
Q Consensus        82 ~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~----------~~~~~~~~~~ape~~~~~~~~~~~~  151 (202)
                      |||+. |++|+||||+||+++.++.  ++|+|||.+.........          ....+++.|+|||.+....   ...
T Consensus       149 ~LH~~-~ivH~dlkp~NIl~~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~~~  222 (317)
T 2buj_A          149 AIHAK-GYAHRDLKPTNILLGDEGQ--PVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQS---HCV  222 (317)
T ss_dssp             HHHHT-TEECCCCCGGGEEECTTSC--EEECCCSSCEESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCS---EEE
T ss_pred             HHHhC-CcccCCCCHHHEEEcCCCC--EEEEecCcchhcccccccccccccccccccccCCcccCCHhHhccCC---CcC
Confidence            99996 9999999999999988876  999999998765321111          1234688999999986321   223


Q ss_pred             CCCCcchhhHHHHHHHHHHHHHHHhcCCCC
Q psy320          152 LDPRVDPTSIKMYTTFCEILEQCRLNHQDF  181 (202)
Q Consensus       152 ~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~  181 (202)
                      ++.++|+||+|+..+      .+..|..+|
T Consensus       223 ~~~~~Di~slG~il~------el~~g~~p~  246 (317)
T 2buj_A          223 IDERTDVWSLGCVLY------AMMFGEGPY  246 (317)
T ss_dssp             ECTHHHHHHHHHHHH------HHHHSSCTT
T ss_pred             CCchhhHHHHHHHHH------HHHhCCCCh
Confidence            577999999986322      444566665

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.95  E-value=4.5e-27  Score=183.04  Aligned_cols=160  Identities=12%  Similarity=0.125  Sum_probs=116.8

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCC-ceEEEEEEccc-cccHHHHHHHc----CCCCCCHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGIN-GTHVCTVTEIM-AECLCNYMIRQ----KFQPAPLVVAKIIVNQILEG   79 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~-~~~~~lv~e~~-~~sL~~~~~~~----~~~~~~~~~~~~~~~qi~~~   79 (202)
                      +.+|++.++++ +||  ||+++++++...+.. ....++||||+ +++|.+++...    ..+.+++..++.++.|++.|
T Consensus        83 ~~~e~~~l~~l-~h~--~iv~~~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~a  159 (313)
T 3brb_A           83 FLSEAACMKDF-SHP--NVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALG  159 (313)
T ss_dssp             HHHHHHHHHTC-CCT--TBCCCCEEEEC-------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcC-CCC--CeeeeeEEEeeccccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHH
Confidence            45677777777 454  999999999843211 13569999999 89999998542    23569999999999999999


Q ss_pred             HHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC---CCCCCCCccchhhHHHHhhhhccCCCCCCCc
Q psy320           80 LNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD---QQSSSKTKSKIFCEILEQCRLNQDFRLDPRV  156 (202)
Q Consensus        80 l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~  156 (202)
                      |.|||+. |++|+||||+||+++.++.  ++|+|||.+........   .....+++.|+|||.+..      ..++.++
T Consensus       160 L~~LH~~-~ivH~dikp~NIli~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~  230 (313)
T 3brb_A          160 MEYLSNR-NFLHRDLAARNCMLRDDMT--VCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLAD------RVYTSKS  230 (313)
T ss_dssp             HHHHHTT-TCCCCCCSGGGEEECTTSC--EEECSCSCC----------------CCGGGSCHHHHHS------SCCCHHH
T ss_pred             HHHHHhC-CcccCCCCcceEEEcCCCc--EEEeecCcceecccccccCcccccCCCccccCchhhcC------CCccchh
Confidence            9999996 9999999999999998876  99999999987643221   123456788999999973      3477899


Q ss_pred             chhhHHHHHHHHHHHHHHHh-cCCCCCC
Q psy320          157 DPTSIKMYTTFCEILEQCRL-NHQDFRP  183 (202)
Q Consensus       157 Diwsl~~~~~~~~~~~~~~~-~~~~~~~  183 (202)
                      |+||+|+..+      .+.. |.++|..
T Consensus       231 Di~slG~il~------el~~~g~~p~~~  252 (313)
T 3brb_A          231 DVWAFGVTMW------EIATRGMTPYPG  252 (313)
T ss_dssp             HHHHHHHHHH------HHHTTSCCSSTT
T ss_pred             hhHHHHHHHH------HHHhcCCCCCcc
Confidence            9999987322      4444 6666653

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.95  E-value=6.6e-28  Score=183.72  Aligned_cols=156  Identities=13%  Similarity=0.076  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      +.+|++.++++ +  ||||+++++++...  .+...++||||+ +++|.+++.......+++..+..++.|++.||.|||
T Consensus        54 ~~~E~~~l~~l-~--h~~iv~~~~~~~~~--~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH  128 (271)
T 3kmu_A           54 FNEECPRLRIF-S--HPNVLPVLGACQSP--PAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLH  128 (271)
T ss_dssp             HHHHGGGGCCC-S--CTTEECEEEEECTT--TSSSCEEEEECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhc-C--CCchhheEEEEccC--CCCCeEeeecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHh
Confidence            45666666666 3  55999999998731  136889999999 889999998765446999999999999999999999


Q ss_pred             hhCC--ccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           85 TKHN--LVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        85 ~~~~--ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      +. |  ++|+||||+||+++.++.  ++++|||.+....    .....+++.|+|||.+....   ...++.++|+||+|
T Consensus       129 ~~-~~~i~H~dikp~Nil~~~~~~--~~l~~~~~~~~~~----~~~~~~t~~y~aPE~~~~~~---~~~~~~~~Di~slG  198 (271)
T 3kmu_A          129 TL-EPLIPRHALNSRSVMIDEDMT--ARISMADVKFSFQ----SPGRMYAPAWVAPEALQKKP---EDTNRRSADMWSFA  198 (271)
T ss_dssp             TS-SSCCTTCCCSGGGEEECTTSC--EEEEGGGSCCTTS----CTTCBSCGGGSCHHHHHSCG---GGSCHHHHHHHHHH
T ss_pred             cC-CCceecCCCccceEEEcCCcc--eeEEeccceeeec----ccCccCCccccChhhhccCC---CCCCCchhhHHHHH
Confidence            95 9  999999999999998876  8888888765532    22356889999999998433   11223379999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +..+      .+..|..+|.
T Consensus       199 ~il~------el~~g~~p~~  212 (271)
T 3kmu_A          199 VLLW------ELVTREVPFA  212 (271)
T ss_dssp             HHHH------HHHHCSCTTT
T ss_pred             HHHH------HHHhCCCCcc
Confidence            6332      3444666554

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.95  E-value=3.8e-27  Score=183.26  Aligned_cols=156  Identities=19%  Similarity=0.203  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHc--CCCCCCHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQ--KFQPAPLVVAKIIVNQILEGLN   81 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~--~~~~~~~~~~~~~~~qi~~~l~   81 (202)
                      ...+|++.++++ +||  ||+++++++..    ....++||||+ +++|.+++...  ....+++..+..++.|++.||.
T Consensus        78 ~~~~E~~~l~~l-~h~--~i~~~~~~~~~----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~  150 (310)
T 2wqm_A           78 DCIKEIDLLKQL-NHP--NVIKYYASFIE----DNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALE  150 (310)
T ss_dssp             HHHHHHHHHHTC-CCT--TBCCEEEEEEE----TTEEEEEEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCC--CEeeEEEEEEc----CCcEEEEEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHH
Confidence            345678777777 455  99999999984    56899999999 88999998752  2355999999999999999999


Q ss_pred             HHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC-CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           82 HLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD-QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        82 ~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~-~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      |||+. |++|+||+|+||+++.++.  ++|+|||.+........ .....+++.|+|||.+..      ..++.++|+||
T Consensus       151 ~LH~~-~i~H~dl~p~NIl~~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~------~~~~~~~Dv~s  221 (310)
T 2wqm_A          151 HMHSR-RVMHRDIKPANVFITATGV--VKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHE------NGYNFKSDIWS  221 (310)
T ss_dssp             HHHHT-TCCCCCCCGGGEEECTTSC--EEECCC------------------CCSSCCHHHHTT------CCCCHHHHHHH
T ss_pred             HHhhC-CeeCCCCcHHHEEEcCCCC--EEEEeccceeeecCCCccccccCCCeeEeChHHhCC------CCCCchhhHHH
Confidence            99996 9999999999999998776  99999999987653322 224568899999999873      33677999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCC
Q psy320          161 IKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       161 l~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +|+..      -.+..|..+|.
T Consensus       222 lG~il------~~l~~g~~p~~  237 (310)
T 2wqm_A          222 LGCLL------YEMAALQSPFY  237 (310)
T ss_dssp             HHHHH------HHHHHSSCTTC
T ss_pred             HHHHH------HHHHhCCCCCc
Confidence            98632      24455666664

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.95  E-value=3.1e-27  Score=188.38  Aligned_cols=157  Identities=18%  Similarity=0.194  Sum_probs=120.8

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCC--ceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGIN--GTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLN   81 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~--~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~   81 (202)
                      ....+|+.+++.+ +||  ||++++++|...+..  ....|+||||+.++|.+++.    ..+++..+..++.|++.||.
T Consensus        86 ~~~~~E~~~l~~l-~h~--niv~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~----~~~~~~~~~~i~~qi~~aL~  158 (371)
T 4exu_A           86 KRAYRELLLLKHM-QHE--NVIGLLDVFTPASSLRNFYDFYLVMPFMQTDLQKIMG----MEFSEEKIQYLVYQMLKGLK  158 (371)
T ss_dssp             HHHHHHHHHHHHC-CCT--TBCCCSEEECSCSSSTTCCCCEEEEECCCEEHHHHTT----SCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc-CCC--CchhhhhheeccCCcccceeEEEEEccccccHHHHhh----cCCCHHHHHHHHHHHHHHHH
Confidence            3455788888888 455  999999999843211  12349999999889987763    34999999999999999999


Q ss_pred             HHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           82 HLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        82 ~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      |||+. |++||||||+||+++.++.  ++|+|||.++....  ......+++.|+|||.+..     ...++.++|+||+
T Consensus       159 ~LH~~-~ivH~Dikp~NIll~~~~~--~kL~Dfg~a~~~~~--~~~~~~~t~~y~aPE~~~~-----~~~~~~~~Diwsl  228 (371)
T 4exu_A          159 YIHSA-GVVHRDLKPGNLAVNEDCE--LKILDFGLARHADA--EMTGYVVTRWYRAPEVILS-----WMHYNQTVDIWSV  228 (371)
T ss_dssp             HHHHT-TCCCSCCCGGGEEECTTCC--EEECSTTCC----------CTTCCCTTSCHHHHSC-----CSCCCTTHHHHHH
T ss_pred             HHHHC-CCcCCCcCHHHeEECCCCC--EEEEecCccccccc--CcCCcccCccccCHHHhcC-----CCCCCcHHhHHHH
Confidence            99996 9999999999999998877  99999999987542  2234578999999999873     2347789999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCC
Q psy320          162 KMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      |+.      +..+..|.++|..
T Consensus       229 G~i------l~el~~g~~pf~~  244 (371)
T 4exu_A          229 GCI------MAEMLTGKTLFKG  244 (371)
T ss_dssp             HHH------HHHHHHSSCSCCC
T ss_pred             HHH------HHHHHhCCCCCCC
Confidence            973      3355668888864

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.95  E-value=5.7e-27  Score=180.47  Aligned_cols=155  Identities=22%  Similarity=0.312  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|++.++++ +||  ||+++++++.    .....++||||+ +++|.+.+....  .+++..++.++.|++.||.||
T Consensus        67 ~~~~e~~~l~~l-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~l~~L  137 (287)
T 2wei_A           67 TILREVELLKKL-DHP--NIMKLFEILE----DSSSFYIVGELYTGGELFDEIIKRK--RFSEHDAARIIKQVFSGITYM  137 (287)
T ss_dssp             HHHHHHHHHHTC-CCT--TBCCEEEEEE----CSSEEEEEECCCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc-cCC--CccEEEEEEe----CCCeEEEEEEccCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHH
Confidence            456788888888 455  9999999998    567899999999 899999887663  499999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCC-cceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADH-VYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~-~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |+. |++|+||+|+||+++.++ ...++|+|||.+.............+++.|+|||.+..       .++.++|+||+|
T Consensus       138 H~~-~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~-------~~~~~~Di~slG  209 (287)
T 2wei_A          138 HKH-NIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRG-------TYDEKCDVWSAG  209 (287)
T ss_dssp             HHT-TCCCSCCCGGGEEESCSSTTCCEEECSTTGGGTBCCCSSCSCHHHHHTTCCHHHHTT-------CCCTHHHHHHHH
T ss_pred             HHC-CeeccCCChhhEEEecCCCcccEEEeccCcceeecCCCccccccCcccccChHHhcC-------CCCCchhhHhHH
Confidence            996 999999999999997643 23499999999987654333334457888999998862       267799999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +..+      .+..|.++|.
T Consensus       210 ~~l~------~l~~g~~p~~  223 (287)
T 2wei_A          210 VILY------ILLSGTPPFY  223 (287)
T ss_dssp             HHHH------HHHHSSCSSC
T ss_pred             HHHH------HHHhCCCCCC
Confidence            6322      4444666554

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.95  E-value=1.8e-27  Score=182.36  Aligned_cols=158  Identities=16%  Similarity=0.186  Sum_probs=122.1

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK--FQPAPLVVAKIIVNQILEGLN   81 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~--~~~~~~~~~~~~~~qi~~~l~   81 (202)
                      ...+|++.++++ +||  ||+++++++...  .+...++||||+ +++|.+++....  ...+++..++.++.|++.||.
T Consensus        51 ~~~~e~~~l~~l-~h~--~i~~~~~~~~~~--~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~  125 (279)
T 2w5a_A           51 MLVSEVNLLREL-KHP--NIVRYYDRIIDR--TNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALK  125 (279)
T ss_dssp             HHHHHHHHHHHC-CCT--TBCCEEEEEEEG--GGTEEEEEEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc-CCC--CCCeEEEEEecC--CCceEEEEEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHH
Confidence            456788888888 455  999999988642  356899999999 889999997643  234999999999999999999


Q ss_pred             HHHhhCC-----ccccCCCCCceeeecCCcceeEEeecccccccccccC-CCCCCCCccchhhHHHHhhhhccCCCCCCC
Q psy320           82 HLHTKHN-----LVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD-QQSSSKTKSKIFCEILEQCRLNQDFRLDPR  155 (202)
Q Consensus        82 ~lh~~~~-----ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~-~~~~~~~~~~~ape~~~~~~~~~~~~~~~~  155 (202)
                      |||+. |     ++|+||||+||+++.++.  ++|+|||.+........ .....+++.|+|||.+...      .++.+
T Consensus       126 ~lH~~-~~~~~~ivH~dl~p~NIl~~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~------~~~~~  196 (279)
T 2w5a_A          126 ECHRR-SDGGHTVLHRDLKPANVFLDGKQN--VKLGDFGLARILNHDTSFAKTFVGTPYYMSPEQMNRM------SYNEK  196 (279)
T ss_dssp             HHHHH-C------CCCCCSGGGEEECSSSC--EEECCCCHHHHC---CHHHHHHHSCCTTCCHHHHHCC-------CCHH
T ss_pred             HHhcc-cCCCCeeEEeccchhhEEEcCCCC--EEEecCchheeeccccccccccCCCccccChHHhccC------CCCch
Confidence            99997 8     999999999999998776  99999999987643211 1124678899999999833      37789


Q ss_pred             cchhhHHHHHHHHHHHHHHHhcCCCCC
Q psy320          156 VDPTSIKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       156 ~Diwsl~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +|+||+|+..+      .+..|.++|.
T Consensus       197 ~Di~slG~il~------~l~~g~~p~~  217 (279)
T 2w5a_A          197 SDIWSLGCLLY------ELCALMPPFT  217 (279)
T ss_dssp             HHHHHHHHHHH------HHHHSSCSSC
T ss_pred             hhHHHHHHHHH------HHHHCCCCCc
Confidence            99999986322      3444655554

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.95  E-value=1.7e-27  Score=182.08  Aligned_cols=157  Identities=17%  Similarity=0.160  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+..++.+ +||  ||+++++++.    .+...++||||+ +++|.+++...  ..+++..+..++.|++.||.||
T Consensus        51 ~~~~e~~~l~~l-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~--~~~~~~~~~~~~~~i~~~l~~l  121 (276)
T 2yex_A           51 NIKKEICINKML-NHE--NVVKFYGHRR----EGNIQYLFLEYCSGGELFDRIEPD--IGMPEPDAQRFFHQLMAGVVYL  121 (276)
T ss_dssp             HHHHHHHHHHTC-CCT--TBCCEEEEEE----ETTEEEEEEECCTTEEGGGGSBTT--TBCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc-CCC--CceeeeeEEE----cCCEEEEEEEecCCCcHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHH
Confidence            456778877777 455  9999999998    466899999999 88999887654  3599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc---CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH---DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~---~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      |+. |++|+||+|+||+++.++.  ++|+|||.+.......   ......+++.|+|||.+....     .++.++|+||
T Consensus       122 H~~-~i~H~dl~p~Nil~~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~~~~Di~s  193 (276)
T 2yex_A          122 HGI-GITHRDIKPENLLLDERDN--LKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRRE-----FHAEPVDVWS  193 (276)
T ss_dssp             HHT-TEECSCCSGGGEEECTTCC--EEECCCTTCEECEETTEECCBCCCCSCGGGCCGGGGTCSS-----BCHHHHHHHH
T ss_pred             HhC-CeeccCCChHHEEEccCCC--EEEeeCCCccccCCCcchhcccCCccccCccChHHHhcCC-----CCCCcchHHH
Confidence            996 9999999999999998776  9999999998764322   123457899999999987322     1245899999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCC
Q psy320          161 IKMYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       161 l~~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      +|+.      +..+..|..+|...
T Consensus       194 lG~i------l~~l~~g~~p~~~~  211 (276)
T 2yex_A          194 CGIV------LTAMLAGELPWDQP  211 (276)
T ss_dssp             HHHH------HHHHHHSSCCCSCS
T ss_pred             HHHH------HHHHHhCCCCCCCC
Confidence            9873      33555588887643

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.95  E-value=3.2e-27  Score=185.11  Aligned_cols=158  Identities=8%  Similarity=0.039  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCC-----CCCCHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKF-----QPAPLVVAKIIVNQILE   78 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~-----~~~~~~~~~~~~~qi~~   78 (202)
                      .+.+|+.+++++ +||  ||+++++++.    .....|+||||+ +++|.+++.....     ..+++..+..++.|++.
T Consensus        79 ~~~~E~~~l~~l-~h~--~iv~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~  151 (327)
T 2yfx_A           79 DFLMEALIISKF-NHQ--NIVRCIGVSL----QSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIAC  151 (327)
T ss_dssp             HHHHHHHHHHHC-CCT--TBCCEEEEEC----SSSSCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhC-CCC--CCCeEEEEEc----CCCCcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHH
Confidence            345688888888 555  9999999998    566789999999 9999999987542     34899999999999999


Q ss_pred             HHHHHHhhCCccccCCCCCceeeecCC-cceeEEeecccccccccccC---CCCCCCCccchhhHHHHhhhhccCCCCCC
Q psy320           79 GLNHLHTKHNLVHTSIKPESIFFKADH-VYIMTLINIQQATTHQECHD---QQSSSKTKSKIFCEILEQCRLNQDFRLDP  154 (202)
Q Consensus        79 ~l~~lh~~~~ivH~dl~p~nil~~~~~-~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~ape~~~~~~~~~~~~~~~  154 (202)
                      ||.|||+. |++|+||||+||+++.++ ...++|+|||.+........   .....+++.|+|||.+...      .++.
T Consensus       152 al~~LH~~-~i~H~dlkp~NIli~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~------~~~~  224 (327)
T 2yfx_A          152 GCQYLEEN-HFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEG------IFTS  224 (327)
T ss_dssp             HHHHHHHT-TCCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHC------CCGGGSCGGGCCHHHHHHC------CCCH
T ss_pred             HHHHHhhC-CeecCcCCHhHEEEecCCCcceEEECccccccccccccccccCCCcCCCcceeCHhHhcCC------CCCc
Confidence            99999996 999999999999998543 22499999999986543221   1134578899999999743      3778


Q ss_pred             CcchhhHHHHHHHHHHHHHHHh-cCCCCC
Q psy320          155 RVDPTSIKMYTTFCEILEQCRL-NHQDFR  182 (202)
Q Consensus       155 ~~Diwsl~~~~~~~~~~~~~~~-~~~~~~  182 (202)
                      ++|+||+|+..+      .+.. |..+|.
T Consensus       225 ~~Di~slG~il~------ellt~g~~p~~  247 (327)
T 2yfx_A          225 KTDTWSFGVLLW------EIFSLGYMPYP  247 (327)
T ss_dssp             HHHHHHHHHHHH------HHHTTSCCSST
T ss_pred             hhhHHHHHHHHH------HHHcCCCCCCC
Confidence            999999986322      3333 666654

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.95  E-value=8.4e-27  Score=181.57  Aligned_cols=161  Identities=19%  Similarity=0.240  Sum_probs=123.2

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEec----------CCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTG----------INGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVN   74 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~----------~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~   74 (202)
                      .+.+|+++++++ +||  ||+++++++...+          ......|+||||+.++|.+++..   +++++..++.++.
T Consensus        54 ~~~~e~~~l~~l-~h~--~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~~~~---~~~~~~~~~~~~~  127 (320)
T 2i6l_A           54 HALREIKIIRRL-DHD--NIVKVFEILGPSGSQLTDDVGSLTELNSVYIVQEYMETDLANVLEQ---GPLLEEHARLFMY  127 (320)
T ss_dssp             HHHHHHHHHHTC-CCT--TBCCEEEEECTTSCBCCC----CCSCSEEEEEEECCSEEHHHHHTT---CCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhc-CCC--CeeEEEEeccccccccccccccccccCceeEEeeccCCCHHHHhhc---CCccHHHHHHHHH
Confidence            445788888877 455  9999999985321          13468999999998899999864   4599999999999


Q ss_pred             HHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc----CCCCCCCCccchhhHHHHhhhhccCC
Q psy320           75 QILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH----DQQSSSKTKSKIFCEILEQCRLNQDF  150 (202)
Q Consensus        75 qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~----~~~~~~~~~~~~ape~~~~~~~~~~~  150 (202)
                      |++.||.|||+. |++|+||||+||+++.++ ..+||+|||.++......    ......++..|+|||.+..     ..
T Consensus       128 qi~~~l~~lH~~-~i~H~dlkp~Nil~~~~~-~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~-----~~  200 (320)
T 2i6l_A          128 QLLRGLKYIHSA-NVLHRDLKPANLFINTED-LVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLS-----PN  200 (320)
T ss_dssp             HHHHHHHHHHHT-TCBCCCCSGGGEEEETTT-TEEEECCCTTCBCC--------CCCGGGSCCTTCCHHHHHC-----TT
T ss_pred             HHHHHHHHHHhC-CEecCCCCHHHEEEcCCC-CeEEEccCccccccCCCcccccccccccccccccCcHHhcC-----cc
Confidence            999999999996 999999999999998543 249999999998764321    1223457889999999873     23


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCCC
Q psy320          151 RLDPRVDPTSIKMYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       151 ~~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      .++.++|+||+|+.      +..+..|..+|...
T Consensus       201 ~~~~~~Di~slG~i------l~el~~g~~pf~~~  228 (320)
T 2i6l_A          201 NYTKAIDMWAAGCI------FAEMLTGKTLFAGA  228 (320)
T ss_dssp             CCCHHHHHHHHHHH------HHHHHHSSCSSCCS
T ss_pred             cCCchhhhHhHHHH------HHHHHhCCCCCCCC
Confidence            46779999999873      33555588877643

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.95  E-value=5.1e-27  Score=182.59  Aligned_cols=155  Identities=20%  Similarity=0.251  Sum_probs=117.6

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKF-QPAPLVVAKIIVNQILEGLN   81 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~-~~~~~~~~~~~~~qi~~~l~   81 (202)
                      +.+.+|++.++++ +||  ||+++++++.    +  ..|+||||+ +++|.+++..... ..++...+..++.|++.||.
T Consensus        46 ~~~~~E~~~l~~l-~hp--~iv~~~~~~~----~--~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~  116 (307)
T 2eva_A           46 KAFIVELRQLSRV-NHP--NIVKLYGACL----N--PVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVA  116 (307)
T ss_dssp             HHHHHHHHHHHHC-CCT--TBCCEEEBCT----T--TTEEEEECCTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC-CCC--CcCeEEEEEc----C--CcEEEEEcCCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHH
Confidence            3456788888888 455  9999999886    2  378999999 8999999976532 23788999999999999999


Q ss_pred             HHHh---hCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcch
Q psy320           82 HLHT---KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDP  158 (202)
Q Consensus        82 ~lh~---~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Di  158 (202)
                      |||+   + |++||||||+||+++.++. .+||+|||.+......  .....+++.|+|||.+..      ..++.++|+
T Consensus       117 ~LH~~~~~-~ivH~dlkp~NIll~~~~~-~~kl~Dfg~~~~~~~~--~~~~~gt~~y~aPE~~~~------~~~~~~~Di  186 (307)
T 2eva_A          117 YLHSMQPK-ALIHRDLKPPNLLLVAGGT-VLKICDFGTACDIQTH--MTNNKGSAAWMAPEVFEG------SNYSEKCDV  186 (307)
T ss_dssp             HHHTCSSS-CCCCCCCSGGGEEEETTTT-EEEECCCCC--------------CCTTSSCHHHHTC------CCCCTHHHH
T ss_pred             HHHhCCCC-CeecCCCChhHEEEeCCCC-EEEEcccccccccccc--cccCCCCCceEChhhhCC------CCCCcHHHH
Confidence            9999   6 8999999999999987764 3799999999765422  223468999999999873      347889999


Q ss_pred             hhHHHHHHHHHHHHHHHhcCCCCCC
Q psy320          159 TSIKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       159 wsl~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      ||+|+.      +-.+..|..+|..
T Consensus       187 ~slG~i------l~el~~g~~p~~~  205 (307)
T 2eva_A          187 FSWGII------LWEVITRRKPFDE  205 (307)
T ss_dssp             HHHHHH------HHHHHHTCCTTTT
T ss_pred             HHHHHH------HHHHHHCCCCchh
Confidence            999873      3355557777753

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.94  E-value=5.2e-27  Score=180.67  Aligned_cols=154  Identities=12%  Similarity=0.133  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|++.++++ +||  ||+++++++.    .. ..++|+||+ +++|.+++.... +.+++..+..++.|++.||.||
T Consensus        67 ~~~~e~~~l~~l-~h~--~i~~~~~~~~----~~-~~~~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~l~~l  137 (291)
T 1u46_A           67 DFIREVNAMHSL-DHR--NLIRLYGVVL----TP-PMKMVTELAPLGSLLDRLRKHQ-GHFLLGTLSRYAVQVAEGMGYL  137 (291)
T ss_dssp             HHHHHHHHHHHC-CCT--TBCCEEEEEC----SS-SCEEEEECCTTCBHHHHHHHHG-GGSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCC--CcccEEEEEc----cC-CceeeEecccCCCHHHHHHhcc-CCcCHHHHHHHHHHHHHHHHHH
Confidence            345788888888 455  9999999997    33 388999999 899999997653 4599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC----CCCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD----QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~----~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      |+. |++|+||||+||+++.++.  ++|+|||.+........    .....++..|+|||.+....      ++.++|+|
T Consensus       138 H~~-~i~H~dikp~Nili~~~~~--~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~------~~~~~Di~  208 (291)
T 1u46_A          138 ESK-RFIHRDLAARNLLLATRDL--VKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRT------FSHASDTW  208 (291)
T ss_dssp             HHT-TEECSCCCGGGEEEEETTE--EEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHHHCE------EEHHHHHH
T ss_pred             HhC-CcccCCCchheEEEcCCCC--EEEccccccccccccccchhhhccCCCCceeeCchhhcCCC------CCchhhHH
Confidence            996 9999999999999998876  99999999987643221    12345777899999997433      66799999


Q ss_pred             hHHHHHHHHHHHHHHHh-cCCCCC
Q psy320          160 SIKMYTTFCEILEQCRL-NHQDFR  182 (202)
Q Consensus       160 sl~~~~~~~~~~~~~~~-~~~~~~  182 (202)
                      |+|+..+      .+.. |..+|.
T Consensus       209 slG~il~------~l~~~g~~p~~  226 (291)
T 1u46_A          209 MFGVTLW------EMFTYGQEPWI  226 (291)
T ss_dssp             HHHHHHH------HHHTTSCCTTT
T ss_pred             HHHHHHH------HHHhCCCCCcc
Confidence            9987322      4444 666664

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.94  E-value=5.3e-27  Score=199.33  Aligned_cols=156  Identities=15%  Similarity=0.156  Sum_probs=121.0

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +.+.+|+.+++++ +||  ||+++++++.     ....|+||||+ +++|.+++.... ..+++..+..++.|++.||.|
T Consensus       436 ~~~~~E~~~l~~l-~Hp--nIv~l~~~~~-----~~~~~lv~E~~~~g~L~~~l~~~~-~~l~~~~~~~i~~qi~~aL~~  506 (656)
T 2j0j_A          436 EKFLQEALTMRQF-DHP--HIVKLIGVIT-----ENPVWIIMELCTLGELRSFLQVRK-FSLDLASLILYAYQLSTALAY  506 (656)
T ss_dssp             HHHHHHHHHHHHC-CCT--TBCCEEEEEC-----SSSCEEEEECCTTCBHHHHHHHTT-TTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CCCeEEEEEe-----cCceEEEEEcCCCCcHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHH
Confidence            3456788888888 455  9999999985     23578999999 899999997653 358999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC--CCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ--SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~--~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      ||+. |++||||||+|||++.++.  +||+|||+++.........  ...+++.|+|||.+...      .++.++|+||
T Consensus       507 LH~~-givHrDikp~NILl~~~~~--vkL~DFG~a~~~~~~~~~~~~~~~~t~~y~aPE~~~~~------~~~~~~DiwS  577 (656)
T 2j0j_A          507 LESK-RFVHRDIAARNVLVSSNDC--VKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFR------RFTSASDVWM  577 (656)
T ss_dssp             HHHT-TCCCSCCSGGGEEEEETTE--EEECCCCCCCSCCC----------CCGGGCCHHHHHHC------CCCHHHHHHH
T ss_pred             HHhC-CccccccchHhEEEeCCCC--EEEEecCCCeecCCCcceeccCCCCCcceeCHHHhcCC------CCCchhhHHH
Confidence            9996 9999999999999998876  9999999998764332211  34567789999999743      3778999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCC
Q psy320          161 IKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       161 l~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +|+..+     +.+..|.++|.
T Consensus       578 lG~il~-----ellt~g~~Pf~  594 (656)
T 2j0j_A          578 FGVCMW-----EILMHGVKPFQ  594 (656)
T ss_dssp             HHHHHH-----HHHTTSCCTTT
T ss_pred             HHHHHH-----HHHHcCCCCCC
Confidence            986322     22334666664

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.94  E-value=2.4e-27  Score=183.44  Aligned_cols=156  Identities=15%  Similarity=0.214  Sum_probs=117.0

Q ss_pred             HHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHc------CCCCCCHHHHHHHHHHHHHH
Q psy320            7 TNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQ------KFQPAPLVVAKIIVNQILEG   79 (202)
Q Consensus         7 ~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~------~~~~~~~~~~~~~~~qi~~~   79 (202)
                      .+|++.++++ +  ||||+++++++.    .....++||||+ +++|.+++...      ..+.+++..+..++.|++.|
T Consensus        61 ~~e~~~l~~l-~--h~~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~  133 (303)
T 2vwi_A           61 LKEIQAMSQC-H--HPNIVSYYTSFV----VKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEG  133 (303)
T ss_dssp             -----CCCCC-C--CTTBCCEEEEEE----SSSCEEEEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhc-C--CCCEeeEEEEEe----ecCCcEEEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHH
Confidence            3455555555 3  559999999998    566899999999 89999998742      23459999999999999999


Q ss_pred             HHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC------CCCCCCCccchhhHHHHhhhhccCCCCC
Q psy320           80 LNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD------QQSSSKTKSKIFCEILEQCRLNQDFRLD  153 (202)
Q Consensus        80 l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~------~~~~~~~~~~~ape~~~~~~~~~~~~~~  153 (202)
                      |.|||+. |++|+||+|+||+++.++.  ++|+|||.+........      .....+++.|+|||.+....     .++
T Consensus       134 l~~lH~~-~i~H~dl~p~Nil~~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~-----~~~  205 (303)
T 2vwi_A          134 LEYLHKN-GQIHRDVKAGNILLGEDGS--VQIADFGVSAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVR-----GYD  205 (303)
T ss_dssp             HHHHHHT-TCCCCCCSGGGEEECTTCC--EEECCCHHHHHCC---------------CCCTTCCHHHHHHHH-----CCC
T ss_pred             HHHHHhC-CCCCCCCChhhEEEcCCCC--EEEEeccchheeccCCCccchhhhcccCCCccccCHHHhcccc-----CCC
Confidence            9999996 9999999999999988876  99999999976543221      12346889999999987432     267


Q ss_pred             CCcchhhHHHHHHHHHHHHHHHhcCCCCCC
Q psy320          154 PRVDPTSIKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       154 ~~~Diwsl~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      .++|+||+|+..+      .+..|..+|..
T Consensus       206 ~~~Di~slG~il~------~l~~g~~pf~~  229 (303)
T 2vwi_A          206 FKADIWSFGITAI------ELATGAAPYHK  229 (303)
T ss_dssp             THHHHHHHHHHHH------HHHHSSCTTTT
T ss_pred             chhhHHHHHHHHH------HHHhCCCCCcc
Confidence            7999999987332      45557777654

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.94  E-value=1.1e-26  Score=182.39  Aligned_cols=139  Identities=15%  Similarity=0.139  Sum_probs=109.2

Q ss_pred             CCccceeeeeeeEEec-CCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhC---------C
Q psy320           20 PSDKLMKLLDHFQVTG-INGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKH---------N   88 (202)
Q Consensus        20 ~h~~Iv~l~~~~~~~~-~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~---------~   88 (202)
                      .|+||+++++.+.... ......|+||||+ +++|.+++....   .++..+..++.|++.||.|||+ .         |
T Consensus        65 ~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~---~~~~~~~~i~~qi~~~L~~LH~-~~~~~~~~~~~  140 (336)
T 3g2f_A           65 EHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLHT---SDWVSSCRLAHSVTRGLAYLHT-ELPRGDHYKPA  140 (336)
T ss_dssp             CCTTBCCEEEEEEEECTTSCEEEEEEECCCTTCBHHHHHHHCC---BCHHHHHHHHHHHHHHHHHHHC-CBCCGGGCBCC
T ss_pred             cCcchhhheecccccccCCCceEEEEEecCCCCcHHHHHhhcc---cchhHHHHHHHHHHHHHHHHHh-hhccccccccc
Confidence            3669999998776533 2355789999999 899999997654   6899999999999999999999 6         9


Q ss_pred             ccccCCCCCceeeecCCcceeEEeecccccccccccC---------CCCCCCCccchhhHHHHhhhhcc-CCCCCCCcch
Q psy320           89 LVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD---------QQSSSKTKSKIFCEILEQCRLNQ-DFRLDPRVDP  158 (202)
Q Consensus        89 ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~---------~~~~~~~~~~~ape~~~~~~~~~-~~~~~~~~Di  158 (202)
                      ++||||||+|||++.++.  +||+|||.++.......         .....+|+.|+|||.+....... ...++.++|+
T Consensus       141 ivH~Dikp~Nill~~~~~--~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~Di  218 (336)
T 3g2f_A          141 ISHRDLNSRNVLVKNDGT--CVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDM  218 (336)
T ss_dssp             EECSSCSGGGEEECTTSC--EEECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHH
T ss_pred             eeecccccceEEEcCCCc--EEEeeccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccch
Confidence            999999999999998876  99999999987643211         11346999999999997421000 0124568999


Q ss_pred             hhHHHH
Q psy320          159 TSIKMY  164 (202)
Q Consensus       159 wsl~~~  164 (202)
                      ||+|+.
T Consensus       219 wslG~i  224 (336)
T 3g2f_A          219 YALGLI  224 (336)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999873

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.94  E-value=5.4e-27  Score=183.80  Aligned_cols=145  Identities=14%  Similarity=0.173  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|++.++++ +||  ||+++++++...  .....++||||+ +++|.+++.... +.+++..+..++.|++.||.||
T Consensus        88 ~~~~E~~~l~~l-~h~--~iv~~~~~~~~~--~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~aL~~L  161 (326)
T 2w1i_A           88 DFEREIEILKSL-QHD--NIVKYKGVCYSA--GRRNLKLIMEYLPYGSLRDYLQKHK-ERIDHIKLLQYTSQICKGMEYL  161 (326)
T ss_dssp             HHHHHHHHHHTC-CCT--TBCCEEEEECC------CCEEEECCCTTCBHHHHHHHST-TSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCC--CeeeEEEEEEec--CCCceEEEEECCCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHHHHHH
Confidence            456788888888 455  999999998732  234789999999 889999998754 4599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC----CCCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD----QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~----~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      |+. |++|+||||+||+++.++.  ++|+|||.+........    .....++..|+|||.+....      ++.++|+|
T Consensus       162 H~~-~ivH~dikp~NIli~~~~~--~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~------~~~~~Di~  232 (326)
T 2w1i_A          162 GTK-RYIHRDLATRNILVENENR--VKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAPESLTESK------FSVASDVW  232 (326)
T ss_dssp             HHT-TEECSCCCGGGEEEEETTE--EEECCCTTCEECCSSCSEEECSSCCSCCGGGCCHHHHHHCE------EEHHHHHH
T ss_pred             HhC-CEeccCCCcceEEEcCCCc--EEEecCcchhhccccccccccccCCCCceeEECchhhcCCC------CCchhhHH
Confidence            996 9999999999999998876  99999999987654322    22345677899999998543      66799999


Q ss_pred             hHHHH
Q psy320          160 SIKMY  164 (202)
Q Consensus       160 sl~~~  164 (202)
                      |+|+.
T Consensus       233 slG~i  237 (326)
T 2w1i_A          233 SFGVV  237 (326)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99763

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.94  E-value=1.5e-27  Score=188.27  Aligned_cols=158  Identities=18%  Similarity=0.222  Sum_probs=127.5

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHH------HHHcCCCCCCHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNY------MIRQKFQPAPLVVAKIIVNQI   76 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~------~~~~~~~~~~~~~~~~~~~qi   76 (202)
                      ..+.+|+++++++ +||  ||+++++++.    .....++||||+ +++|.++      +.....+.+++..++.++.|+
T Consensus        88 ~~~~~E~~~l~~l-~h~--~i~~~~~~~~----~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi  160 (348)
T 2pml_X           88 DDFKNELQIITDI-KNE--YCLTCEGIIT----NYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSV  160 (348)
T ss_dssp             HHHHHHHHHHTTC-CCT--TBCCCSEEEE----SSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CcceEEEEEe----eCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHH
Confidence            5667888888888 455  9999999998    567999999999 7899988      554334669999999999999


Q ss_pred             HHHHHHHHh-hCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCC-
Q psy320           77 LEGLNHLHT-KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDP-  154 (202)
Q Consensus        77 ~~~l~~lh~-~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~-  154 (202)
                      +.||.|||+ . |++|+||+|+||+++.++.  ++|+|||.+...... ......++..|+|||.+...     ..++. 
T Consensus       161 ~~~l~~lH~~~-~i~H~dl~p~Nil~~~~~~--~kl~dfg~~~~~~~~-~~~~~~~~~~y~aPE~~~~~-----~~~~~~  231 (348)
T 2pml_X          161 LNSFSYIHNEK-NICHRDVKPSNILMDKNGR--VKLSDFGESEYMVDK-KIKGSRGTYEFMPPEFFSNE-----SSYNGA  231 (348)
T ss_dssp             HHHHHHHHHTS-CEECCCCCGGGEEECTTSC--EEECCCTTCEECBTT-EECSSCSCGGGCCGGGGSSC-----CCEEHH
T ss_pred             HHHHHHHhccC-CEeecCCChHhEEEcCCCc--EEEeccccccccccc-cccCCCCCcCccCchhhcCC-----CCCCcc
Confidence            999999998 7 9999999999999998876  999999999876432 23346789999999998732     13555 


Q ss_pred             CcchhhHHHHHHHHHHHHHHHhcCCCCCC
Q psy320          155 RVDPTSIKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       155 ~~Diwsl~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      ++|+||+|+..+      .+..|..+|..
T Consensus       232 ~~Di~slG~il~------~l~~g~~pf~~  254 (348)
T 2pml_X          232 KVDIWSLGICLY------VMFYNVVPFSL  254 (348)
T ss_dssp             HHHHHHHHHHHH------HHHHSSCSSCC
T ss_pred             hhhHHHHHHHHH------HHHhCCCCCCC
Confidence            899999987322      44457666654

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.94  E-value=2.8e-26  Score=178.65  Aligned_cols=137  Identities=18%  Similarity=0.256  Sum_probs=101.3

Q ss_pred             CCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCce
Q psy320           20 PSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESI   99 (202)
Q Consensus        20 ~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~ni   99 (202)
                      .||||+++++++.    .....++||||+++.+..+..... +.+++..+..++.|++.||.|||+++|++|+||||+||
T Consensus        82 ~h~~i~~~~~~~~----~~~~~~lv~e~~~~~~~~l~~~~~-~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dlkp~Ni  156 (318)
T 2dyl_A           82 DCPYIVQCFGTFI----TNTDVFIAMELMGTCAEKLKKRMQ-GPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNI  156 (318)
T ss_dssp             TCTTBCCEEEEEE----CSSEEEEEECCCSEEHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCGGGE
T ss_pred             CCCceeeEEEEEe----cCCcEEEEEeccCCcHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHHhhCCEEeCCCCHHHE
Confidence            3569999999998    567999999999877777766543 45999999999999999999999833999999999999


Q ss_pred             eeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHH
Q psy320          100 FFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus       100 l~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~  164 (202)
                      +++.++.  ++|+|||.+.............+++.|+|||.+..... ....++.++|+||+|+.
T Consensus       157 l~~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~-~~~~~~~~~Di~slG~i  218 (318)
T 2dyl_A          157 LLDERGQ--IKLCDFGISGRLVDDKAKDRSAGCAAYMAPERIDPPDP-TKPDYDIRADVWSLGIS  218 (318)
T ss_dssp             EECTTSC--EEECCCTTC--------------CCTTCCHHHHC---------CCTHHHHHHHHHH
T ss_pred             EECCCCC--EEEEECCCchhccCCccccccCCCccccChhhcccccc-cccCCccccchhhHHHH
Confidence            9998876  99999999987654433445578999999999853210 12346779999999863

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.94  E-value=1e-26  Score=178.89  Aligned_cols=157  Identities=14%  Similarity=0.184  Sum_probs=122.1

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +.+.+|+++++++ +||  ||+++++++.    +..  ++||||+ +++|.+.+.... ..+++..+..++.|++.||.|
T Consensus        68 ~~~~~E~~~l~~l-~h~--~i~~~~~~~~----~~~--~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~l~~~l~~  137 (287)
T 4f0f_A           68 QEFQREVFIMSNL-NHP--NIVKLYGLMH----NPP--RMVMEFVPCGDLYHRLLDKA-HPIKWSVKLRLMLDIALGIEY  137 (287)
T ss_dssp             HHHHHHHHHHTTC-CCT--TBCCEEEEET----TTT--EEEEECCTTCBHHHHHHCTT-SCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--Cchhhheeec----CCC--eEEEEecCCCCHHHHHhccc-CCccHHHHHHHHHHHHHHHHH
Confidence            4456788888888 455  9999999987    333  6999999 899998886543 469999999999999999999


Q ss_pred             HHhhCC--ccccCCCCCceeeecCCc---ceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcc
Q psy320           83 LHTKHN--LVHTSIKPESIFFKADHV---YIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVD  157 (202)
Q Consensus        83 lh~~~~--ivH~dl~p~nil~~~~~~---~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~D  157 (202)
                      ||+. |  ++|+||||+||+++.++.   ..++|+|||.++....  ......+++.|+|||.+...    ...++.++|
T Consensus       138 lH~~-~~~ivH~dikp~Nil~~~~~~~~~~~~kl~Dfg~~~~~~~--~~~~~~g~~~y~aPE~~~~~----~~~~~~~~D  210 (287)
T 4f0f_A          138 MQNQ-NPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQSVH--SVSGLLGNFQWMAPETIGAE----EESYTEKAD  210 (287)
T ss_dssp             HHTS-SSCCBCSCCSGGGEEESCCCTTCSCCEEECCCTTCBCCSS--CEECCCCCCTTSCGGGSSCS----SCEECHHHH
T ss_pred             HHhC-CCCeecCCCCcceEEEeccCCCCceeEEeCCCCccccccc--cccccCCCccccCchhhccC----CCCcCchhh
Confidence            9996 9  999999999999976542   2389999999986532  22345789999999998421    233567999


Q ss_pred             hhhHHHHHHHHHHHHHHHhcCCCCCC
Q psy320          158 PTSIKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       158 iwsl~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +||+|+..+      .+..|..+|..
T Consensus       211 i~slG~~l~------~l~~g~~pf~~  230 (287)
T 4f0f_A          211 TYSFAMILY------TILTGEGPFDE  230 (287)
T ss_dssp             HHHHHHHHH------HHHHSSCTTTT
T ss_pred             HHHHHHHHH------HHHcCCCCCcc
Confidence            999987332      55557777754

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.94  E-value=2.6e-26  Score=179.81  Aligned_cols=150  Identities=13%  Similarity=0.157  Sum_probs=101.4

Q ss_pred             CCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHH---cCCCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCC
Q psy320           20 PSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIR---QKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKP   96 (202)
Q Consensus        20 ~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~---~~~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p   96 (202)
                      .||||+++++++.    .....++||||+.++|.+++..   ...+.+++..+..++.|++.||.|||+.+|++|+||||
T Consensus        79 ~h~niv~~~~~~~----~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~ivH~dlkp  154 (327)
T 3aln_A           79 DCPYIVQFYGALF----REGDCWICMELMSTSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLKIIHRDIKP  154 (327)
T ss_dssp             CCTTBCCEEEEEE----CSSEEEEEECCCSEEHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHSCCCSCCCG
T ss_pred             CCCcEeeeeeEEE----eCCceEEEEeecCCChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhccCCEeECCCCH
Confidence            3669999999998    5678999999997788888763   12356999999999999999999999933999999999


Q ss_pred             CceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHHh
Q psy320           97 ESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRL  176 (202)
Q Consensus        97 ~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~~  176 (202)
                      +||+++.++.  +||+|||.++............+++.|+|||.+....  ....++.++|+||+|+..+      .+..
T Consensus       155 ~NIll~~~~~--~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~~~~~Di~slG~il~------~l~~  224 (327)
T 3aln_A          155 SNILLDRSGN--IKLCDFGISGQLVDSIAKTRDAGCRPYMAPERIDPSA--SRQGYDVRSDVWSLGITLY------ELAT  224 (327)
T ss_dssp             GGEEEETTTE--EEECCCSSSCC--------------------------------CCSHHHHHHHHHHHH------HHHH
T ss_pred             HHEEEcCCCC--EEEccCCCceecccccccccCCCCccccCceeecccc--CcCCCCchhhHHHHHHHHH------HHHH
Confidence            9999998876  9999999998775443333457899999999984221  1234678999999997333      5555


Q ss_pred             cCCCCCC
Q psy320          177 NHQDFRP  183 (202)
Q Consensus       177 ~~~~~~~  183 (202)
                      |..+|..
T Consensus       225 g~~pf~~  231 (327)
T 3aln_A          225 GRFPYPK  231 (327)
T ss_dssp             SCCCSSC
T ss_pred             CCCCCCC
Confidence            8877754

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.94  E-value=4.6e-26  Score=177.27  Aligned_cols=142  Identities=18%  Similarity=0.235  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHhcC-CCccceeeeeeeEEecCCceEEEEEEcc-c-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            7 TNLIKTLIEIQKH-PSDKLMKLLDHFQVTGINGTHVCTVTEI-M-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         7 ~~e~~~l~~l~~~-~h~~Iv~l~~~~~~~~~~~~~~~lv~e~-~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+|++.+.++... .|+||+++++++.    .....++|+|+ + +++|.+++....  .+++..++.++.|++.||.||
T Consensus        82 ~~e~~~l~~l~~~~~h~~i~~~~~~~~----~~~~~~~v~e~~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~l~~l  155 (312)
T 2iwi_A           82 PLEVALLWKVGAGGGHPGVIRLLDWFE----TQEGFMLVLERPLPAQDLFDYITEKG--PLGEGPSRCFFGQVVAAIQHC  155 (312)
T ss_dssp             CHHHHHHHHHHSSCCCSSBCCEEEEC---------CEEEEECCSSEEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccCCCCCeeeEEEEEe----cCCeEEEEEEecCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHH
Confidence            3688888888532 2669999999998    45688999999 5 899999998764  499999999999999999999


Q ss_pred             HhhCCccccCCCCCceeee-cCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCC-CCcchhhH
Q psy320           84 HTKHNLVHTSIKPESIFFK-ADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLD-PRVDPTSI  161 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~-~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~-~~~Diwsl  161 (202)
                      |+. |++|+||||+||+++ .++.  ++|+|||.+...... ......++..|+|||.+....      +. .++|+||+
T Consensus       156 H~~-~i~H~dlkp~Nil~~~~~~~--~kl~dfg~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~------~~~~~~Di~sl  225 (312)
T 2iwi_A          156 HSR-GVVHRDIKDENILIDLRRGC--AKLIDFGSGALLHDE-PYTDFDGTRVYSPPEWISRHQ------YHALPATVWSL  225 (312)
T ss_dssp             HHH-TEECCCCSGGGEEEETTTTE--EEECCCSSCEECCSS-CBCCCCSCTTTSCHHHHHHSC------BCHHHHHHHHH
T ss_pred             HHC-CeeecCCChhhEEEeCCCCe--EEEEEcchhhhcccC-cccccCCcccccCceeeecCC------CCCccchHHHH
Confidence            997 999999999999998 5555  999999999876532 223456899999999987433      33 48999999


Q ss_pred             HHH
Q psy320          162 KMY  164 (202)
Q Consensus       162 ~~~  164 (202)
                      |+.
T Consensus       226 G~i  228 (312)
T 2iwi_A          226 GIL  228 (312)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            753

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.94  E-value=7.8e-27  Score=184.75  Aligned_cols=156  Identities=19%  Similarity=0.195  Sum_probs=119.9

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecC--CceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGI--NGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~--~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      .+.+|+.+++.+ +||  ||+++++++...+.  .....|+||||+.++|.+++.    .++++..+..++.|++.||.|
T Consensus        69 ~~~~E~~~l~~l-~h~--~iv~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~----~~~~~~~~~~i~~qi~~al~~  141 (353)
T 3coi_A           69 RAYRELLLLKHM-QHE--NVIGLLDVFTPASSLRNFYDFYLVMPFMQTDLQKIMG----LKFSEEKIQYLVYQMLKGLKY  141 (353)
T ss_dssp             HHHHHHHHHHHC-CCT--TBCCCSEEECSCSSGGGCCCCEEEEECCSEEGGGTTT----SCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc-CCC--CcccHhheEecccccccceeEEEEeccccCCHHHHhc----CCCCHHHHHHHHHHHHHHHHH
Confidence            456788888888 455  99999999984321  113569999999888877653    349999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      ||+. |++|+||||+||+++.++.  ++|+|||.+......  .....+++.|+|||.+..     ...++.++|+||+|
T Consensus       142 LH~~-~ivH~dlkp~NIl~~~~~~--~kl~Dfg~~~~~~~~--~~~~~~t~~y~aPE~~~~-----~~~~~~~~Di~slG  211 (353)
T 3coi_A          142 IHSA-GVVHRDLKPGNLAVNEDCE--LKILDFGLARHADAE--MTGYVVTRWYRAPEVILS-----WMHYNQTVDIWSVG  211 (353)
T ss_dssp             HHHT-TCCCSSCCGGGEEECTTCC--EEECSTTCTTC----------CCSBCCSCHHHHSC-----CSCCCTTHHHHHHH
T ss_pred             HHHC-CcccCCCCHHHEeECCCCc--EEEeecccccCCCCC--ccccccCcCcCCHHHHhC-----cCCCCchhhHHHHH
Confidence            9996 9999999999999998876  999999999875422  224578899999999873     23467899999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +.      +..+..|.++|..
T Consensus       212 ~i------l~el~~g~~pf~~  226 (353)
T 3coi_A          212 CI------MAEMLTGKTLFKG  226 (353)
T ss_dssp             HH------HHHHHHSSCSSBS
T ss_pred             HH------HHHHHhCCCCCCC
Confidence            73      3355558777754

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.94  E-value=5.4e-27  Score=184.49  Aligned_cols=144  Identities=13%  Similarity=0.103  Sum_probs=110.1

Q ss_pred             hHHHHHHHHHHHHhc------CCCccceeeeeeeEEecC--------------------------CceEEEEEEccc-cc
Q psy320            4 NYATNLIKTLIEIQK------HPSDKLMKLLDHFQVTGI--------------------------NGTHVCTVTEIM-AE   50 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~------~~h~~Iv~l~~~~~~~~~--------------------------~~~~~~lv~e~~-~~   50 (202)
                      ....+|++++++++.      ..||||+++.+++...+.                          .....|+||||+ +|
T Consensus        68 ~~~~~E~~~l~~l~~l~~~~~~~h~niv~l~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g  147 (336)
T 2vuw_A           68 EEILPEIIISKELSLLSGEVCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGG  147 (336)
T ss_dssp             HHHHHHHHHHHHHHHGGGCSSSBCCCBCCEEEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCC
T ss_pred             HHHHHHHHHHHHHHHhhccccccCCchhhhcceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCC
Confidence            556789999999862      013377666666543321                          156899999999 77


Q ss_pred             cHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH-hhCCccccCCCCCceeeecCCc------------------ceeEE
Q psy320           51 CLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH-TKHNLVHTSIKPESIFFKADHV------------------YIMTL  111 (202)
Q Consensus        51 sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh-~~~~ivH~dl~p~nil~~~~~~------------------~~~~l  111 (202)
                      ++.+.+.+   +.+++..++.++.|++.||.||| +. ||+||||||+|||++.++.                  ..+||
T Consensus       148 ~ll~~~~~---~~~~~~~~~~i~~qi~~aL~~lH~~~-~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL  223 (336)
T 2vuw_A          148 IDLEQMRT---KLSSLATAKSILHQLTASLAVAEASL-RFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSI  223 (336)
T ss_dssp             EETGGGTT---TCCCHHHHHHHHHHHHHHHHHHHHHH-CCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEE
T ss_pred             ccHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHhC-CEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEE
Confidence            55444433   45899999999999999999999 86 9999999999999998761                  14999


Q ss_pred             eecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320          112 INIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus       112 ~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      +|||+|+.....    ...+|+.|+|||++.+      . .+.++||||++
T Consensus       224 ~DFG~a~~~~~~----~~~gt~~y~aPE~~~g------~-~~~~~Diwsl~  263 (336)
T 2vuw_A          224 IDYTLSRLERDG----IVVFCDVSMDEDLFTG------D-GDYQFDIYRLM  263 (336)
T ss_dssp             CCCTTCBEEETT----EEECCCCTTCSGGGCC------C-SSHHHHHHHHH
T ss_pred             eeccccEecCCC----cEEEeecccChhhhcC------C-Cccceehhhhh
Confidence            999999876432    3478999999999872      2 25689999983

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.94  E-value=1.2e-26  Score=198.18  Aligned_cols=139  Identities=19%  Similarity=0.197  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCc-eEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGING-THVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~-~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      .+.+|+++++++ +  ||||++++++|...+..+ ...|+||||+ +++|.+++..    ++++..++.++.|++.||.|
T Consensus       125 ~~~~E~~~l~~l-~--hp~iv~~~~~~~~~~~~~~~~~~lv~E~~~g~~L~~~~~~----~l~~~~~~~~~~qi~~aL~~  197 (681)
T 2pzi_A          125 MAMAERQFLAEV-V--HPSIVQIFNFVEHTDRHGDPVGYIVMEYVGGQSLKRSKGQ----KLPVAEAIAYLLEILPALSY  197 (681)
T ss_dssp             HHHHHHGGGGGC-C--CTTBCCEEEEEEEECTTSCEEEEEEEECCCCEECC----C----CCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc-C--CCCcCeEeeeEeecCCCCCceeEEEEEeCCCCcHHHHHhC----CCCHHHHHHHHHHHHHHHHH
Confidence            345677777777 4  459999999999755322 3479999999 8999887643    49999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      ||+. ||+||||||+|||++.+ .  +||+|||.++.....   ....+|+.|++||++...       ++.++|+||+|
T Consensus       198 lH~~-giiHrDlkp~NIll~~~-~--~kl~DFG~a~~~~~~---~~~~gt~~y~aPE~~~~~-------~~~~sDi~slG  263 (681)
T 2pzi_A          198 LHSI-GLVYNDLKPENIMLTEE-Q--LKLIDLGAVSRINSF---GYLYGTPGFQAPEIVRTG-------PTVATDIYTVG  263 (681)
T ss_dssp             HHHT-TEECCCCSGGGEEECSS-C--EEECCCTTCEETTCC---SCCCCCTTTSCTTHHHHC-------SCHHHHHHHHH
T ss_pred             HHHC-CCeecccChHHeEEeCC-c--EEEEecccchhcccC---CccCCCccccCHHHHcCC-------CCCceehhhhH
Confidence            9996 99999999999999874 4  999999999876432   345789999999998732       35689999998


Q ss_pred             HH
Q psy320          163 MY  164 (202)
Q Consensus       163 ~~  164 (202)
                      +.
T Consensus       264 ~~  265 (681)
T 2pzi_A          264 RT  265 (681)
T ss_dssp             HH
T ss_pred             HH
Confidence            63

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.93  E-value=1.2e-26  Score=180.90  Aligned_cols=146  Identities=12%  Similarity=0.230  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            7 TNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         7 ~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      .+|++.++++ +  |+||+++++++.    .....++||||+ +++|.+++.... ..+++..+..++.|++.||.|||+
T Consensus        77 ~~e~~~l~~l-~--h~~iv~~~~~~~----~~~~~~iv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~al~~lH~  148 (319)
T 2y4i_B           77 KREVMAYRQT-R--HENVVLFMGACM----SPPHLAIITSLCKGRTLYSVVRDAK-IVLDVNKTRQIAQEIVKGMGYLHA  148 (319)
T ss_dssp             CTTGGGGTTC-C--CTTBCCCCEEEE----CSSCEEEECBCCCSEEHHHHTTSSC-CCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcC-C--CCCEeEEEEEEe----cCCceEEEeecccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHHHh
Confidence            4567777766 4  459999999998    566899999999 899999986643 459999999999999999999999


Q ss_pred             hCCccccCCCCCceeeecCCcceeEEeecccccccccc------cCCCCCCCCccchhhHHHHhhhhc---cCCCCCCCc
Q psy320           86 KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQEC------HDQQSSSKTKSKIFCEILEQCRLN---QDFRLDPRV  156 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~------~~~~~~~~~~~~~ape~~~~~~~~---~~~~~~~~~  156 (202)
                      . |++|+||||+||+++ ++.  ++|+|||.+......      .......+++.|+|||.+......   ....++.++
T Consensus       149 ~-~i~H~dlkp~NIl~~-~~~--~~l~Dfg~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~  224 (319)
T 2y4i_B          149 K-GILHKDLKSKNVFYD-NGK--VVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHS  224 (319)
T ss_dssp             T-TCCCCCCCSTTEEEC---C--CEECCCSCCC----------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHH
T ss_pred             C-CccccCCChhhEEEe-CCC--EEEeecCCccccccccccccccccccCCCcccccChHHhhhccccccccccCCCchh
Confidence            6 999999999999997 344  999999998764321      111234688899999998743210   123467799


Q ss_pred             chhhHHHH
Q psy320          157 DPTSIKMY  164 (202)
Q Consensus       157 Diwsl~~~  164 (202)
                      |+||+|+.
T Consensus       225 Di~slG~i  232 (319)
T 2y4i_B          225 DVFALGTI  232 (319)
T ss_dssp             HHHHHHHH
T ss_pred             hHHHHHHH
Confidence            99999863

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.93  E-value=2.4e-26  Score=193.96  Aligned_cols=163  Identities=17%  Similarity=0.170  Sum_probs=131.5

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEec--CCceEEEEEEccc-cccHHHHHHHcC-CCCCCHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTG--INGTHVCTVTEIM-AECLCNYMIRQK-FQPAPLVVAKIIVNQILEGL   80 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~--~~~~~~~lv~e~~-~~sL~~~~~~~~-~~~~~~~~~~~~~~qi~~~l   80 (202)
                      ...+|+++++++ +||  ||+++++++...+  ..+...|+||||+ +++|.+++.... ..++++..++.++.|++.||
T Consensus        58 ~~~~Ei~iL~~L-~Hp--nIV~l~~v~~~~~~~~~~~~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL  134 (676)
T 3qa8_A           58 RWCLEIQIMKKL-NHP--NVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSAL  134 (676)
T ss_dssp             HHHHHHHHHHHC-CBT--TBCCEEECCTTTCCCCTTSSCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCC--CCCceeeeecccccccCCCeEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHH
Confidence            456789999888 455  9999999976311  1256789999999 999999998654 23589999999999999999


Q ss_pred             HHHHhhCCccccCCCCCceeeecCCc-ceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           81 NHLHTKHNLVHTSIKPESIFFKADHV-YIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        81 ~~lh~~~~ivH~dl~p~nil~~~~~~-~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      .|||+. |++|+||||+||+++.++. ..++|+|||.+.............+++.|+|||.+.      +..++.++|+|
T Consensus       135 ~yLHs~-gIVHrDLKP~NILl~~~g~~~~vKL~DFG~a~~~~~~~~~~~~~gt~~Y~APE~l~------~~~~s~ksDIw  207 (676)
T 3qa8_A          135 RYLHEN-RIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQGELCTEFVGTLQYLAPELLE------QKKYTVTVDYW  207 (676)
T ss_dssp             HHHHHT-TBCCCCCCSTTEEEECCSSSCEEEECSCCCCCBTTSCCCCCCCCSCCTTCSSCSSC------CSCCSTTHHHH
T ss_pred             HHHHHC-CCccCCCCHHHeEeecCCCceeEEEcccccccccccccccccccCCcccCChHHhc------cCCCCchhHHH
Confidence            999996 9999999999999997653 348999999998876544444568999999999986      34478899999


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCCC
Q psy320          160 SIKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       160 sl~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      |+|+.      +-.+..|..+|.+
T Consensus       208 SLGvi------LyeLltG~~Pf~~  225 (676)
T 3qa8_A          208 SFGTL------AFECITGFRPFLP  225 (676)
T ss_dssp             HHHHH------HHHHHSSCSSCCS
T ss_pred             HHHHH------HHHHHHCCCCCCc
Confidence            99973      3366668888865

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.93  E-value=2.1e-25  Score=172.82  Aligned_cols=145  Identities=17%  Similarity=0.204  Sum_probs=116.8

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ....+|+..+.++.+||  ||++++++|..........++||||+ +++|.+++.....+.+++..++.++.|++.||.|
T Consensus        55 ~~~~~e~~~~~~~~~h~--~i~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~  132 (299)
T 3m2w_A           55 PKARREVELHWRASQCP--HIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQY  132 (299)
T ss_dssp             HHHHHHHHHHHHHTTST--TBCCEEEEEEEEETTEEEEEEEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCC--CchhHHhhhhhhcCCCceEEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHH
Confidence            45567888887765666  99999999985444467899999999 8899999988765679999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCC-cceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADH-VYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~-~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      ||+. |++|+||||+||+++.++ ...++|+|||.+.....                           ..++.++|+||+
T Consensus       133 lH~~-~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~---------------------------~~~~~~~Diwsl  184 (299)
T 3m2w_A          133 LHSI-NIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTG---------------------------EKYDKSCDMWSL  184 (299)
T ss_dssp             HHHT-TEECCCCSGGGEEESSSSTTCCEEECCCTTCEECTT---------------------------CGGGGHHHHHHH
T ss_pred             HHhC-CcccCCCCHHHEEEecCCCCCcEEEecccccccccc---------------------------ccCCchhhHHHH
Confidence            9996 999999999999999732 23499999999865421                           125668999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCC
Q psy320          162 KMYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      |+.      +-.+..|.++|...
T Consensus       185 G~i------l~el~tg~~pf~~~  201 (299)
T 3m2w_A          185 GVI------MYILLCGYPPFYSN  201 (299)
T ss_dssp             HHH------HHHHHHSSCSCCC-
T ss_pred             HHH------HHHHHHCCCCCCCC
Confidence            973      33566688888654

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.90  E-value=1.9e-23  Score=161.02  Aligned_cols=131  Identities=14%  Similarity=0.066  Sum_probs=103.1

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +.+.+|++.+.++ +  ||||+++++++..    ....|+||||+ +++|.+++...    .....+..++.|++.||.|
T Consensus        76 ~~~~~e~~~l~~l-~--hp~iv~~~~~~~~----~~~~~lv~e~~~g~~L~~~l~~~----~~~~~~~~i~~ql~~aL~~  144 (286)
T 3uqc_A           76 QETLSRTLRLSRI-D--KPGVARVLDVVHT----RAGGLVVAEWIRGGSLQEVADTS----PSPVGAIRAMQSLAAAADA  144 (286)
T ss_dssp             HHHHHHHHHHHTC-C--CTTBCCEEEEEEE----TTEEEEEEECCCEEEHHHHHTTC----CCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC-C--CCCcceeeEEEEE----CCcEEEEEEecCCCCHHHHHhcC----CChHHHHHHHHHHHHHHHH
Confidence            3456677777666 4  4599999999984    56899999999 89999998532    4566788899999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      ||+. |++||||||+|||++.++.  ++|++++.                   ++             .++.++|+||+|
T Consensus       145 lH~~-givH~Dikp~NIll~~~g~--~kl~~~~~-------------------~~-------------~~~~~~Di~slG  189 (286)
T 3uqc_A          145 AHRA-GVALSIDHPSRVRVSIDGD--VVLAYPAT-------------------MP-------------DANPQDDIRGIG  189 (286)
T ss_dssp             HHHT-TCCCCCCSGGGEEEETTSC--EEECSCCC-------------------CT-------------TCCHHHHHHHHH
T ss_pred             HHHC-CCccCCCCcccEEEcCCCC--EEEEeccc-------------------cC-------------CCCchhHHHHHH
Confidence            9996 9999999999999998877  88874432                   11             156689999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFRPDPR  186 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~  186 (202)
                      +.      +..+..|..+|.....
T Consensus       190 ~i------l~elltg~~Pf~~~~~  207 (286)
T 3uqc_A          190 AS------LYALLVNRWPLPEAGV  207 (286)
T ss_dssp             HH------HHHHHHSEECSCCCSB
T ss_pred             HH------HHHHHHCCCCCCcCCc
Confidence            73      3356668888876543

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.90  E-value=2.3e-24  Score=174.14  Aligned_cols=134  Identities=13%  Similarity=0.029  Sum_probs=102.7

Q ss_pred             eEEEEEEccccccHHHHHHHc-----CCCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEee
Q psy320           39 THVCTVTEIMAECLCNYMIRQ-----KFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLIN  113 (202)
Q Consensus        39 ~~~~lv~e~~~~sL~~~~~~~-----~~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~D  113 (202)
                      ...+++|+.++++|.+++...     ..+.+++..+..++.|++.||.|||++ ||+||||||+|||++.++.  +||+|
T Consensus       178 ~~~~~~~~~~~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~-~iiHrDiKp~NILl~~~~~--~kL~D  254 (413)
T 3dzo_A          178 LSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY-GLVHTYLRPVDIVLDQRGG--VFLTG  254 (413)
T ss_dssp             CSEEEEEECCSEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHT-TEECSCCCGGGEEECTTCC--EEECC
T ss_pred             cceEEEeehhcCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhC-CcccCCcccceEEEecCCe--EEEEe
Confidence            357888898899999998522     223477888999999999999999996 9999999999999998887  99999


Q ss_pred             cccccccccccCCCCCCCCccchhhHHHHhhhhc----cCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCCCCCC
Q psy320          114 IQQATTHQECHDQQSSSKTKSKIFCEILEQCRLN----QDFRLDPRVDPTSIKMYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       114 fg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~----~~~~~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      ||+++.....  .....+ +.|+|||++......    ....++.++|+||+|+..+      .++.|..+|...
T Consensus       255 FG~a~~~~~~--~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~------elltg~~Pf~~~  320 (413)
T 3dzo_A          255 FEHLVRDGAS--AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIY------WIWCADLPNTDD  320 (413)
T ss_dssp             GGGCEETTEE--ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHH------HHHHSSCCCCTT
T ss_pred             ccceeecCCc--cccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHHH------HHHHCCCCCCCc
Confidence            9998876433  233456 999999999533100    1334677999999987332      555577777543

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.89  E-value=4.1e-24  Score=177.89  Aligned_cols=133  Identities=14%  Similarity=0.084  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+++++++ +||  ||+++..++..    ....|+||||+ +++|.+++..          +..++.|++.||.||
T Consensus       385 ~~~~E~~il~~l-~h~--nIv~~~~~~~~----~~~~~lVmE~~~ggsL~~~l~~----------~~~i~~qi~~aL~~L  447 (540)
T 3en9_A          385 RTAREARYLALV-KDF--GIPAPYIFDVD----LDNKRIMMSYINGKLAKDVIED----------NLDIAYKIGEIVGKL  447 (540)
T ss_dssp             HHHHHHHHHHHG-GGG--TCCCCCEEEEE----TTTTEEEEECCCSEEHHHHSTT----------CTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc-CCC--CcCceEEEEEe----CCccEEEEECCCCCCHHHHHHH----------HHHHHHHHHHHHHHH
Confidence            357899999999 455  99966555552    33559999999 8999998754          557999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC--------CCCCCCccchhhHHHHhhhhccCCCCCCC
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ--------QSSSKTKSKIFCEILEQCRLNQDFRLDPR  155 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~--------~~~~~~~~~~ape~~~~~~~~~~~~~~~~  155 (202)
                      |++ ||+||||||+|||++.  .  +||+|||+|+........        ....+|+.|+|||++....    ..|+..
T Consensus       448 H~~-gIiHrDiKp~NILl~~--~--~kL~DFGla~~~~~~~~~~~~~~~~~~~~~GT~~y~APEv~~~~~----~~Y~~~  518 (540)
T 3en9_A          448 HKN-DVIHNDLTTSNFIFDK--D--LYIIDFGLGKISNLDEDKAVDLIVFKKAVLSTHHEKFDEIWERFL----EGYKSV  518 (540)
T ss_dssp             HHT-TEECTTCCTTSEEESS--S--EEECCCTTCEECCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH----HHHHHH
T ss_pred             HHC-cCccCCCCHHHEEECC--e--EEEEECccCEECCCccccccchhhhhhhhcCCCCcCCHHHHHHHH----HHHHHH
Confidence            996 9999999999999987  4  999999999987543211        2457899999999998632    225667


Q ss_pred             cchhhHHH
Q psy320          156 VDPTSIKM  163 (202)
Q Consensus       156 ~Diwsl~~  163 (202)
                      +|+||.++
T Consensus       519 ~d~ws~vl  526 (540)
T 3en9_A          519 YDRWEIIL  526 (540)
T ss_dssp             CTTHHHHH
T ss_pred             HhHHHHHH
Confidence            89999875

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.74  E-value=3e-18  Score=131.68  Aligned_cols=103  Identities=17%  Similarity=0.274  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+++++++.     | +++.+++..     ...|+||||+ +++|.+ +.      .  .....++.|++.||.||
T Consensus       150 ~~~~E~~~l~~l~-----~-~~v~~~~~~-----~~~~lvmE~~~g~~L~~-l~------~--~~~~~i~~qi~~~l~~l  209 (282)
T 1zar_A          150 SARNEFRALQKLQ-----G-LAVPKVYAW-----EGNAVLMELIDAKELYR-VR------V--ENPDEVLDMILEEVAKF  209 (282)
T ss_dssp             HHHHHHHHHHHTT-----T-SSSCCEEEE-----ETTEEEEECCCCEEGGG-CC------C--SCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc-----C-CCcCeEEec-----cceEEEEEecCCCcHHH-cc------h--hhHHHHHHHHHHHHHHH
Confidence            4678999999995     3 444454442     3469999999 889987 31      1  23457999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHh
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQ  143 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~  143 (202)
                      |+. |++||||||+|||++ ++.  ++|+|||+|+...            .+.|||.+..
T Consensus       210 H~~-giiHrDlkp~NILl~-~~~--vkl~DFG~a~~~~------------~~~a~e~l~r  253 (282)
T 1zar_A          210 YHR-GIVHGDLSQYNVLVS-EEG--IWIIDFPQSVEVG------------EEGWREILER  253 (282)
T ss_dssp             HHT-TEECSCCSTTSEEEE-TTE--EEECCCTTCEETT------------STTHHHHHHH
T ss_pred             HHC-CCEeCCCCHHHEEEE-CCc--EEEEECCCCeECC------------CCCHHHHHHH
Confidence            995 999999999999999 665  9999999987542            3468888763

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.61  E-value=6.9e-16  Score=117.01  Aligned_cols=97  Identities=16%  Similarity=0.216  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccc------cHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAE------CLCNYMIRQKFQPAPLVVAKIIVNQILE   78 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~------sL~~~~~~~~~~~~~~~~~~~~~~qi~~   78 (202)
                      .+.+|++.+.++. |++.+++..++.        ...++||||+++      +|.+....     .++..+..++.|++.
T Consensus       116 ~~~~E~~~l~~l~-~~~i~~p~~~~~--------~~~~lVmE~~g~~g~~~~~L~~~~~~-----~~~~~~~~i~~qi~~  181 (258)
T 1zth_A          116 WTEKEFRNLERAK-EAGVSVPQPYTY--------MKNVLLMEFIGEDELPAPTLVELGRE-----LKELDVEGIFNDVVE  181 (258)
T ss_dssp             HHHHHHHHHHHHH-HTTCCCCCEEEE--------ETTEEEEECCEETTEECCBHHHHGGG-----GGGSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-hCCCCCCeEEEc--------CCCEEEEEecCCCCCccccHHHHhhc-----cChHHHHHHHHHHHH
Confidence            4678999999995 331223333332        145899999943      78776432     234567889999999


Q ss_pred             HHHHHH-hhCCccccCCCCCceeeecCCcceeEEeeccccccc
Q psy320           79 GLNHLH-TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTH  120 (202)
Q Consensus        79 ~l~~lh-~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~  120 (202)
                      +|.+|| + +|++||||||+|||++.  .  ++|+|||+|...
T Consensus       182 ~l~~lH~~-~givHrDlkp~NILl~~--~--~~liDFG~a~~~  219 (258)
T 1zth_A          182 NVKRLYQE-AELVHADLSEYNIMYID--K--VYFIDMGQAVTL  219 (258)
T ss_dssp             HHHHHHHT-SCEECSSCSTTSEEESS--S--EEECCCTTCEET
T ss_pred             HHHHHHHH-CCEEeCCCCHHHEEEcC--c--EEEEECcccccC
Confidence            999999 8 59999999999999987  4  999999999765

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.33  E-value=5.7e-13  Score=105.96  Aligned_cols=72  Identities=13%  Similarity=0.161  Sum_probs=56.7

Q ss_pred             EEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcc--------eeEE
Q psy320           41 VCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVY--------IMTL  111 (202)
Q Consensus        41 ~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~--------~~~l  111 (202)
                      .++||||+ |.+|.++.        ....+..++.|++.+|.++|+ +|+|||||||.|||++.++..        .+.+
T Consensus       186 ~~LVME~i~G~~L~~l~--------~~~~~~~l~~qll~~l~~lH~-~gIVHrDLKp~NILl~~dgd~~d~~~~~~~~~i  256 (397)
T 4gyi_A          186 HTIVMSLVDALPMRQVS--------SVPDPASLYADLIALILRLAK-HGLIHGDFNEFNILIREEKDAEDPSSITLTPII  256 (397)
T ss_dssp             TEEEEECCSCEEGGGCC--------CCSCHHHHHHHHHHHHHHHHH-TTEECSCCSTTSEEEEEEECSSCTTSEEEEEEE
T ss_pred             ceEEEEecCCccHhhhc--------ccHHHHHHHHHHHHHHHHHHH-CCCcCCCCCHHHEEEeCCCCcccccccccceEE
Confidence            37999999 77774332        122445688999999999999 599999999999999887531        3789


Q ss_pred             eecccccccc
Q psy320          112 INIQQATTHQ  121 (202)
Q Consensus       112 ~Dfg~a~~~~  121 (202)
                      +||+++....
T Consensus       257 ID~~Q~V~~~  266 (397)
T 4gyi_A          257 IXFPQMVSMD  266 (397)
T ss_dssp             CCCTTCEETT
T ss_pred             EEeCCcccCC
Confidence            9999987643

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=99.06  E-value=5.3e-10  Score=84.38  Aligned_cols=100  Identities=10%  Similarity=0.072  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|++.++.+.++  ..++++++++..    ....|+|||++ |.+|.+...       +......++.++..++..|
T Consensus        55 ~~~~E~~~l~~l~~~--~~vP~v~~~~~~----~~~~~lv~e~i~G~~l~~~~~-------~~~~~~~~~~~l~~~l~~L  121 (263)
T 3tm0_A           55 DVEREKDMMLWLEGK--LPVPKVLHFERH----DGWSNLLMSEADGVLCSEEYE-------DEQSPEKIIELYAECIRLF  121 (263)
T ss_dssp             CHHHHHHHHHHHTTT--SCCCCEEEEEEE----TTEEEEEEECCSSEEHHHHCC-------TTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC--CCCCeEEEEEec----CCceEEEEEecCCeehhhccC-------CcccHHHHHHHHHHHHHHH
Confidence            467899999999654  378889888873    45889999999 888876521       1122346778888899999


Q ss_pred             Hh-----------------------------------------------------------hCCccccCCCCCceeeecC
Q psy320           84 HT-----------------------------------------------------------KHNLVHTSIKPESIFFKAD  104 (202)
Q Consensus        84 h~-----------------------------------------------------------~~~ivH~dl~p~nil~~~~  104 (202)
                      |+                                                           . +++|+|++|.||+++.+
T Consensus       122 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~l~HgDl~~~Nil~~~~  200 (263)
T 3tm0_A          122 HSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDTPFKDPRELYDFLKTEKPEEEL-VFSHGDLGDSNIFVKDG  200 (263)
T ss_dssp             HHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTTCSSSSHHHHHHHHHHCCCCCCE-EEECSSCCTTSEEEETT
T ss_pred             hCCCcccCCCcchHHHHHHHHHHHHhccccccccccccccccCCCHHHHHHHHHhcCCCCCc-eEECCCCCcCcEEEECC
Confidence            98                                                           2 58999999999999754


Q ss_pred             CcceeEEeeccccccc
Q psy320          105 HVYIMTLINIQQATTH  120 (202)
Q Consensus       105 ~~~~~~l~Dfg~a~~~  120 (202)
                      .  .+.++||+.+...
T Consensus       201 ~--~~~lIDwe~a~~g  214 (263)
T 3tm0_A          201 K--VSGFIDLGRSGRA  214 (263)
T ss_dssp             E--EEEECCCTTCEEE
T ss_pred             c--EEEEEEchhcccC
Confidence            3  2679999987653

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=98.80  E-value=1.3e-08  Score=76.28  Aligned_cols=98  Identities=11%  Similarity=0.053  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|++.++.+..+ ...++++++++.    .+...++||||+ |.+|.  .  ..   ...   ..++.+++..+..+|
T Consensus        60 ~~~E~~~l~~l~~~-~~~vP~~~~~~~----~~~~~~~v~e~i~G~~l~--~--~~---~~~---~~~~~~l~~~l~~lh  124 (264)
T 1nd4_A           60 LQDEAARLSWLATT-GVPCAAVLDVVT----EAGRDWLLLGEVPGQDLL--S--SH---LAP---AEKVSIMADAMRRLH  124 (264)
T ss_dssp             HHHHHHHHHHHHTT-TCCBCCEEEEEE----CSSCEEEEEECCSSEETT--T--SC---CCH---HHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHhC-CCCCCeEEEecc----CCCCCEEEEEecCCcccC--c--Cc---CCH---hHHHHHHHHHHHHHh
Confidence            46799999999655 224677888776    345689999999 77773  1  10   221   244556666666666


Q ss_pred             hh---------------------------------------------------------CCccccCCCCCceeeecCCcc
Q psy320           85 TK---------------------------------------------------------HNLVHTSIKPESIFFKADHVY  107 (202)
Q Consensus        85 ~~---------------------------------------------------------~~ivH~dl~p~nil~~~~~~~  107 (202)
                      +.                                                         .+++|+|++|.||+++.++. 
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~-  203 (264)
T 1nd4_A          125 TLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRF-  203 (264)
T ss_dssp             TSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEE-
T ss_pred             CCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCccHHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcE-
Confidence            52                                                         02999999999999976532 


Q ss_pred             eeEEeeccccccc
Q psy320          108 IMTLINIQQATTH  120 (202)
Q Consensus       108 ~~~l~Dfg~a~~~  120 (202)
                       +.++||+.+...
T Consensus       204 -~~liD~~~a~~g  215 (264)
T 1nd4_A          204 -SGFIDCGRLGVA  215 (264)
T ss_dssp             -EEECCCTTCEEE
T ss_pred             -EEEEcchhcccC
Confidence             679999997654

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=98.76  E-value=1.1e-08  Score=80.63  Aligned_cols=110  Identities=9%  Similarity=0.143  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++.+.+. +..+++++.++.... .....++||||+ |.++.+.    ....++......++.+++..|..|
T Consensus        82 ~~~~E~~~l~~L~~~-~vpvP~~~~~~~~~~-~~g~~~~vme~v~G~~l~~~----~~~~l~~~~~~~~~~~l~~~La~L  155 (359)
T 3dxp_A           82 AIEREYRVMDALAGT-DVPVAKMYALCEDES-VIGRAFYIMEFVSGRVLWDQ----SLPGMSPAERTAIYDEMNRVIAAM  155 (359)
T ss_dssp             CHHHHHHHHHHHTTS-SSCCCCEEEEECCTT-TTSSCEEEEECCCCBCCCCT----TCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcC-CCCCCcEEEECCCCC-ccCCeEEEEEecCCeecCCC----ccccCCHHHHHHHHHHHHHHHHHH
Confidence            456799999999643 446888888776321 113578999999 6665321    112367888888999999999999


Q ss_pred             Hhh---------------------------------------------------------CCccccCCCCCceeeecCCc
Q psy320           84 HTK---------------------------------------------------------HNLVHTSIKPESIFFKADHV  106 (202)
Q Consensus        84 h~~---------------------------------------------------------~~ivH~dl~p~nil~~~~~~  106 (202)
                      |+.                                                         .+++|+|++|.||+++.++.
T Consensus       156 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~  235 (359)
T 3dxp_A          156 HTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIPAMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEP  235 (359)
T ss_dssp             HHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCHHHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSS
T ss_pred             hCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCChHHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCC
Confidence            971                                                         26899999999999987653


Q ss_pred             ceeEEeeccccccc
Q psy320          107 YIMTLINIQQATTH  120 (202)
Q Consensus       107 ~~~~l~Dfg~a~~~  120 (202)
                      ..+.++||+.+...
T Consensus       236 ~v~~viDwe~a~~g  249 (359)
T 3dxp_A          236 RVLAVLDWELSTLG  249 (359)
T ss_dssp             CEEEECCCTTCEEE
T ss_pred             cEEEEECccccccC
Confidence            23689999988753

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=98.34  E-value=1.3e-06  Score=67.27  Aligned_cols=111  Identities=14%  Similarity=0.121  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|++.++.+..+....+.+.+..... +......|+||+++ |.++......    .++......++.+++..+..|
T Consensus        56 ~~~~E~~~l~~l~~~~~v~vP~~~~~~~~-~~~~~~~~~vm~~i~G~~l~~~~~~----~l~~~~~~~~~~~l~~~la~L  130 (304)
T 3sg8_A           56 NLFNEVNILKRIHNKLPLPIPEVVFTGMP-SETYQMSFAGFTKIKGVPLTPLLLN----NLPKQSQNQAAKDLARFLSEL  130 (304)
T ss_dssp             HHHHHHHHHHHHTTSSSSCCCCEEEECCC-CSSCSCSCEEEECCCCEECCHHHHH----TSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCCceEeecCC-CCCCCcceEEEcccCCeECCccccc----cCCHHHHHHHHHHHHHHHHHH
Confidence            45678999988854432234444444321 10112457899999 7777643322    166677777777777777777


Q ss_pred             Hhh---------------------------------------------------------CCccccCCCCCceeeecCCc
Q psy320           84 HTK---------------------------------------------------------HNLVHTSIKPESIFFKADHV  106 (202)
Q Consensus        84 h~~---------------------------------------------------------~~ivH~dl~p~nil~~~~~~  106 (202)
                      |+.                                                         ..++|+|++|.||+++.+..
T Consensus       131 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~  210 (304)
T 3sg8_A          131 HSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMKKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKN  210 (304)
T ss_dssp             HHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTT
T ss_pred             HcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccHHHHHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCC
Confidence            740                                                         14799999999999997422


Q ss_pred             ceeEEeeccccccc
Q psy320          107 YIMTLINIQQATTH  120 (202)
Q Consensus       107 ~~~~l~Dfg~a~~~  120 (202)
                      ..+.++||+.+...
T Consensus       211 ~~~~~iD~~~~~~~  224 (304)
T 3sg8_A          211 TICGIIDFGDAAIS  224 (304)
T ss_dssp             EEEEECCCTTCEEE
T ss_pred             CEEEEEeCCCCccC
Confidence            24789999998764

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=98.22  E-value=1.2e-05  Score=61.96  Aligned_cols=108  Identities=12%  Similarity=0.079  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|.+.|+.+..+-...|.+.+.+...   .....++||+++ |.++.+....    .++......++.++...|..|
T Consensus        55 ~~~~E~~~L~~L~~~~~v~VP~~~~~~~~---~~g~~~~v~e~i~G~~l~~~~~~----~l~~~~~~~~~~~lg~~La~L  127 (306)
T 3tdw_A           55 ELNKEIQLLPLLVGCVKVNIPQYVYIGKR---SDGNPFVGYRKVQGQILGEDGMA----VLPDDAKDRLALQLAEFMNEL  127 (306)
T ss_dssp             HHHHHHHHHHHHTTTCSSBCCCEEEEEEC---TTSCEEEEEECCCSEECHHHHHT----TSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCeEeeccc---CCCceEEEEeccCCeECchhhhh----hCCHHHHHHHHHHHHHHHHHH
Confidence            45679999999965422235566655541   234567999999 7776552211    123333333333333333333


Q ss_pred             Hh-----------------------------------------------------------hCCccccCCCCCceeeec-
Q psy320           84 HT-----------------------------------------------------------KHNLVHTSIKPESIFFKA-  103 (202)
Q Consensus        84 h~-----------------------------------------------------------~~~ivH~dl~p~nil~~~-  103 (202)
                      |+                                                           ...++|+|++|.||+++. 
T Consensus       128 H~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~  207 (306)
T 3tdw_A          128 SAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLRDYLTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLN  207 (306)
T ss_dssp             HHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHCHHHHCCCCEEECSCCSGGGEEECTT
T ss_pred             hcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHhCcccccCCCeeEeCCCCcccEEEecC
Confidence            32                                                           124699999999999987 


Q ss_pred             --CCcceeEEeeccccccc
Q psy320          104 --DHVYIMTLINIQQATTH  120 (202)
Q Consensus       104 --~~~~~~~l~Dfg~a~~~  120 (202)
                        ++. ...++||+.+...
T Consensus       208 ~~~~~-~~~~iD~~~a~~g  225 (306)
T 3tdw_A          208 SRQTP-LTGIIDFGDAAIS  225 (306)
T ss_dssp             CSSCC-EEEECCCTTCEEE
T ss_pred             CCCCc-eEEEEehhhcCCC
Confidence              233 2589999988764

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=98.09  E-value=3.7e-05  Score=57.82  Aligned_cols=101  Identities=12%  Similarity=0.149  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|...|+.+...  --|.+++.++..    ....++||+++ |.++.+......      .....+..++...+.-||
T Consensus        66 ~~~E~~~l~~l~~~--vPVP~v~~~~~~----~~~~~lvme~l~G~~~~~~~~~~~------~~~~~~~~~l~~~L~~Lh  133 (272)
T 4gkh_A           66 VTDEMVRLNWLTAF--MPLPTIKHFIRT----PDDAWLLTTAIPGKTAFQVLEEYP------DSGENIVDALAVFLRRLH  133 (272)
T ss_dssp             HHHHHHHHHHHTTT--SCCCCEEEEEEE----TTEEEEEEECCCSEEHHHHHHHCG------GGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccC--CCcCeEEEEEEE----CCeEEEEEEeeCCccccccccCCH------HHHHHHHHHHHHHHHHhc
Confidence            45688888888543  247778888774    45789999999 777766543321      111223333333333333


Q ss_pred             h---------------------------------------------------h------CCccccCCCCCceeeecCCcc
Q psy320           85 T---------------------------------------------------K------HNLVHTSIKPESIFFKADHVY  107 (202)
Q Consensus        85 ~---------------------------------------------------~------~~ivH~dl~p~nil~~~~~~~  107 (202)
                      +                                                   .      ..++|+|+.+.||+++.++. 
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~-  212 (272)
T 4gkh_A          134 SIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKL-  212 (272)
T ss_dssp             TSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHHHHHHHHTTCCCCCCEEEECSCCCTTSEEEETTEE-
T ss_pred             CCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHHHHHHHHHhcccccCCcEEEcCCCCCCeEEEECCeE-
Confidence            2                                                   0      12789999999999986543 


Q ss_pred             eeEEeeccccccc
Q psy320          108 IMTLINIQQATTH  120 (202)
Q Consensus       108 ~~~l~Dfg~a~~~  120 (202)
                       +-|+||+.+...
T Consensus       213 -~~viDwe~a~~g  224 (272)
T 4gkh_A          213 -IGCIDVGRVGIA  224 (272)
T ss_dssp             -EEECCCTTCEEE
T ss_pred             -EEEEECcccccC
Confidence             679999988764

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=97.58  E-value=8.3e-05  Score=58.26  Aligned_cols=32  Identities=3%  Similarity=0.147  Sum_probs=25.8

Q ss_pred             CCccccCCCCCceeeecCCcceeEEeeccccccc
Q psy320           87 HNLVHTSIKPESIFFKADHVYIMTLINIQQATTH  120 (202)
Q Consensus        87 ~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~  120 (202)
                      ..++|+|+.|.||+++.+.  .+.++||+.+...
T Consensus       222 ~~l~HgDl~~~Nil~~~~~--~~~vIDwe~a~~g  253 (357)
T 3ats_A          222 PVLLWGDARVGNVLYRDFQ--PVAVLDWEMVALG  253 (357)
T ss_dssp             CEEECSSCSGGGEEEETTE--EEEECCGGGCEEE
T ss_pred             ceEEeCCCCCCeEEEeCCc--EEEEEcccccccC
Confidence            3789999999999998422  3789999988653

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=96.43  E-value=0.014  Score=44.42  Aligned_cols=30  Identities=10%  Similarity=0.130  Sum_probs=24.5

Q ss_pred             CccccCCCCCceeeecCCcceeEEeeccccccc
Q psy320           88 NLVHTSIKPESIFFKADHVYIMTLINIQQATTH  120 (202)
Q Consensus        88 ~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~  120 (202)
                      .++|+|+.+.||+ ..++.  +.++||..+...
T Consensus       174 ~l~HgDl~~~Nil-~~~~~--~~lID~e~a~~g  203 (301)
T 3dxq_A          174 AACHCDPLCENFL-DTGER--MWIVDWEYSGMN  203 (301)
T ss_dssp             EEECSCCCGGGEE-ECSSC--EEECCCTTCEEE
T ss_pred             eeeccCCCcCCEE-ECCCC--EEEEecccccCC
Confidence            4899999999999 44444  899999887653

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=96.34  E-value=0.006  Score=47.01  Aligned_cols=31  Identities=13%  Similarity=0.272  Sum_probs=26.6

Q ss_pred             CCccccCCCCCceeeecCCcceeEEeecccccc
Q psy320           87 HNLVHTSIKPESIFFKADHVYIMTLINIQQATT  119 (202)
Q Consensus        87 ~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~  119 (202)
                      .+++|+|+++.||+++.++.  +.++||+.+..
T Consensus       222 ~~l~HgD~~~~Nil~~~~~~--~~lIDfe~a~~  252 (346)
T 2q83_A          222 PNLCHQDYGTGNTLLGENEQ--IWVIDLDTVSF  252 (346)
T ss_dssp             CCEECSSCSTTSEEECGGGC--EEECCCTTCEE
T ss_pred             CceecCCCCcccEEEeCCCc--EEEEehhhccc
Confidence            37999999999999976655  99999998764

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=95.04  E-value=0.019  Score=45.91  Aligned_cols=31  Identities=16%  Similarity=0.292  Sum_probs=26.4

Q ss_pred             CCccccCCCCCceeeecCCcceeEEeeccccccc
Q psy320           87 HNLVHTSIKPESIFFKADHVYIMTLINIQQATTH  120 (202)
Q Consensus        87 ~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~  120 (202)
                      ..++|+|++|.|||++.++   +.++||+.+...
T Consensus       232 ~~liHGDl~~~Nil~~~~~---~~lID~e~a~~G  262 (420)
T 2pyw_A          232 QALIHGDLHTGSVMVTQDS---TQVIDPEFSFYG  262 (420)
T ss_dssp             CEEECSCCSGGGEEECSSC---EEECCCTTCEEE
T ss_pred             CeEEecCCCCCcEEEeCCC---CEEEeCcccccC
Confidence            3799999999999997653   899999887654

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=94.33  E-value=0.014  Score=44.69  Aligned_cols=30  Identities=23%  Similarity=0.495  Sum_probs=25.2

Q ss_pred             CccccCCCCCceeeecCCcceeEEeecccccc
Q psy320           88 NLVHTSIKPESIFFKADHVYIMTLINIQQATT  119 (202)
Q Consensus        88 ~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~  119 (202)
                      +++|+|+.+.||+++.++.  +.++||+.+..
T Consensus       188 ~liHgDl~~~Nil~~~~~~--~~lIDf~~a~~  217 (322)
T 2ppq_A          188 GVIHADLFQDNVFFLGDEL--SGLIDFYFACN  217 (322)
T ss_dssp             EEECSCCCGGGEEEETTEE--EEECCCTTCEE
T ss_pred             ccCCCCCCccCEEEeCCce--EEEecchhccC
Confidence            6899999999999986532  58999988765

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=93.77  E-value=0.059  Score=41.26  Aligned_cols=29  Identities=14%  Similarity=0.298  Sum_probs=24.9

Q ss_pred             CccccCCCCCceeeecCCcceeEEeeccccccc
Q psy320           88 NLVHTSIKPESIFFKADHVYIMTLINIQQATTH  120 (202)
Q Consensus        88 ~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~  120 (202)
                      .++|+|+++.||+++ + .  +.++||+.+...
T Consensus       196 ~l~HgD~~~~Nil~~-~-~--~~lIDfe~a~~g  224 (328)
T 1zyl_A          196 LRLHGDCHAGNILWR-D-G--PMFVDLDDARNG  224 (328)
T ss_dssp             EECCSSCSGGGEEES-S-S--EEECCCTTCCEE
T ss_pred             eeeeCCCCcccEeEc-C-C--CEEEECCCCCcC
Confidence            689999999999998 4 4  899999887654

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=93.73  E-value=0.022  Score=43.93  Aligned_cols=33  Identities=15%  Similarity=0.345  Sum_probs=26.5

Q ss_pred             CccccCCCCCceeeecCC--cceeEEeeccccccc
Q psy320           88 NLVHTSIKPESIFFKADH--VYIMTLINIQQATTH  120 (202)
Q Consensus        88 ~ivH~dl~p~nil~~~~~--~~~~~l~Dfg~a~~~  120 (202)
                      .++|+|+.+.||+++.+.  ...+.++||+.+...
T Consensus       184 ~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~G  218 (333)
T 3csv_A          184 VFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKLG  218 (333)
T ss_dssp             EEECSCCSGGGEEECTTSCGGGGEEECCCTTCEEE
T ss_pred             eeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCcC
Confidence            699999999999998641  123899999988764

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=93.04  E-value=0.071  Score=43.32  Aligned_cols=32  Identities=22%  Similarity=0.220  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc
Q psy320            7 TNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM   48 (202)
Q Consensus         7 ~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~   48 (202)
                      .+|...++.+..+.  -.+++++.|.    ++    +|++|+
T Consensus       152 ~~E~~vl~~L~~~g--l~P~ll~~~~----~G----~v~e~I  183 (458)
T 2qg7_A          152 EREKKISCILYNKN--IAKKIYVFFT----NG----RIEEFM  183 (458)
T ss_dssp             HHHHHHHHHHTTSS--SBCCEEEEET----TE----EEEECC
T ss_pred             HHHHHHHHHHHhcC--CCCCEEEEeC----Ce----EEEEee
Confidence            57899999996654  3466777663    22    489998

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=92.73  E-value=0.049  Score=42.26  Aligned_cols=32  Identities=13%  Similarity=0.298  Sum_probs=27.0

Q ss_pred             CccccCCCCCceeeecCCcceeEEeecccccccc
Q psy320           88 NLVHTSIKPESIFFKADHVYIMTLINIQQATTHQ  121 (202)
Q Consensus        88 ~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~  121 (202)
                      +++|+|+.+.||+++.++.  +.++||+.+....
T Consensus       207 ~~~HgD~~~~N~l~~~~~~--~~~iD~e~~~~~~  238 (339)
T 3i1a_A          207 VLCHSDIHAGNVLVGNEES--IYIIDWDEPMLAP  238 (339)
T ss_dssp             EEECSCCCGGGEEECGGGC--EEECCCSSCEEEC
T ss_pred             eeEeCCCCcCCEEEeCCCe--EEEEECCCCeeCC
Confidence            6899999999999986555  8999998877643

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=92.27  E-value=0.058  Score=43.37  Aligned_cols=32  Identities=16%  Similarity=0.288  Sum_probs=24.7

Q ss_pred             CccccCCCCCceeeecCC--------------------------cceeEEeecccccc
Q psy320           88 NLVHTSIKPESIFFKADH--------------------------VYIMTLINIQQATT  119 (202)
Q Consensus        88 ~ivH~dl~p~nil~~~~~--------------------------~~~~~l~Dfg~a~~  119 (202)
                      .++|+|+.+.||+++.+.                          ...+.++||..|..
T Consensus       250 v~~H~Dl~~gNiL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lIDfEya~~  307 (429)
T 1nw1_A          250 TFCHNDLQEGNILLPKASSGNIRMPSLSDETQALGNSLSAFNPADPRLVLIDFEYASY  307 (429)
T ss_dssp             EEECSCCCGGGEEEEC------------------------------CCEECCCTTCEE
T ss_pred             EEEeCCCCCCeEEeeCCccccccccccccccccccccccccccCCCeEEEEecccCCc
Confidence            589999999999998751                          02389999988765

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=91.79  E-value=0.061  Score=42.10  Aligned_cols=29  Identities=14%  Similarity=0.303  Sum_probs=23.9

Q ss_pred             CccccCCCCCceeeecCCcceeEEeecccccc
Q psy320           88 NLVHTSIKPESIFFKADHVYIMTLINIQQATT  119 (202)
Q Consensus        88 ~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~  119 (202)
                      +++|+|+.+.||+++.+ .  +.++||..+..
T Consensus       213 ~l~HgDl~~~Nil~~~~-~--~~lID~e~a~~  241 (369)
T 3c5i_A          213 VFCHNDLQENNIINTNK-C--LRLIDFEYSGF  241 (369)
T ss_dssp             EEECSCCCGGGEEECC--C--EEECCCTTCEE
T ss_pred             EEEeCCCCcccEEecCC-c--EEEEEecCCCC
Confidence            58999999999998643 3  89999987764

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=91.63  E-value=0.072  Score=42.08  Aligned_cols=30  Identities=23%  Similarity=0.292  Sum_probs=25.1

Q ss_pred             CccccCCCCCceeeecCCcceeEEeeccccccc
Q psy320           88 NLVHTSIKPESIFFKADHVYIMTLINIQQATTH  120 (202)
Q Consensus        88 ~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~  120 (202)
                      .++|+|+.|.||+++.+ .  ++++||..+...
T Consensus       228 ~L~HGDl~~~Nil~~~~-~--~~lID~e~a~~G  257 (397)
T 2olc_A          228 TLIHGDLHTGSIFASEH-E--TKVIDPEFAFYG  257 (397)
T ss_dssp             EEECSCCSGGGEEECSS-C--EEECCCTTCEEE
T ss_pred             ceeeCCCCcCcEEEeCC-C--eEEEeCcccccC
Confidence            78999999999999764 2  899999877653

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=90.40  E-value=0.14  Score=40.58  Aligned_cols=33  Identities=12%  Similarity=0.308  Sum_probs=26.3

Q ss_pred             CccccCCCCCceeeecCC--cceeEEeeccccccc
Q psy320           88 NLVHTSIKPESIFFKADH--VYIMTLINIQQATTH  120 (202)
Q Consensus        88 ~ivH~dl~p~nil~~~~~--~~~~~l~Dfg~a~~~  120 (202)
                      .++|+|+.+.||+++.+.  ...+.++||..|...
T Consensus       221 ~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~~  255 (379)
T 3feg_A          221 VFCHNDIQEGNILLLSEPENADSLMLVDFEYSSYN  255 (379)
T ss_dssp             EEECSCCCGGGEEEESCC---CCEEECCCTTCEEE
T ss_pred             EEEcCCCCCCeEEEcCCCCccCcEEEEecccCCcC
Confidence            589999999999998761  123899999988753

>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*

Probab=89.13  E-value=0.17  Score=40.18  Aligned_cols=33  Identities=12%  Similarity=0.234  Sum_probs=25.3

Q ss_pred             CccccCCCCCceeeecC----CcceeEEeeccccccc
Q psy320           88 NLVHTSIKPESIFFKAD----HVYIMTLINIQQATTH  120 (202)
Q Consensus        88 ~ivH~dl~p~nil~~~~----~~~~~~l~Dfg~a~~~  120 (202)
                      .++|+|+.+.||++..+    ....+.++||..|...
T Consensus       245 vfcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~n  281 (401)
T 3g15_A          245 VFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSYN  281 (401)
T ss_dssp             EEECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEEE
T ss_pred             eeEEecCCCCeEEEecCcccCcCCeEEEechHhccCC
Confidence            36899999999999542    1224999999988753

>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}

Probab=85.65  E-value=0.37  Score=38.67  Aligned_cols=30  Identities=7%  Similarity=0.359  Sum_probs=24.7

Q ss_pred             CccccCCCCCceeeecCCcceeEEeeccccccc
Q psy320           88 NLVHTSIKPESIFFKADHVYIMTLINIQQATTH  120 (202)
Q Consensus        88 ~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~  120 (202)
                      .++|+|+.+.||+ +.++.  +.++||..|...
T Consensus       263 ~~~H~D~~~~N~l-~~~~~--~~~IDwe~a~~~  292 (424)
T 3mes_A          263 VFAHNDLQENNLL-QTQNN--IRMIDYEYSAIN  292 (424)
T ss_dssp             EEECSCCCGGGEE-ECSSC--EEECCCTTCEEE
T ss_pred             eEECCCCCcccee-cCCCc--EEEEecccCCcC
Confidence            5899999999999 54444  999999988753

>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A

Probab=81.63  E-value=8  Score=28.10  Aligned_cols=61  Identities=20%  Similarity=0.066  Sum_probs=44.7

Q ss_pred             cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEe
Q psy320           49 AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLI  112 (202)
Q Consensus        49 ~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~  112 (202)
                      .-||.+++...+ .++++.+++.++.|.+.+|.-.-.+..-..+=+.|..|++..+|.  |.+.
T Consensus        32 ~vSL~eIL~~~~-~PlsEEqaWALc~Qc~~~L~~~~~~~~~~~~i~~~~~i~l~~dG~--V~f~   92 (229)
T 2yle_A           32 ALSLEEILRLYN-QPINEEQAWAVCYQCCGSLRAAARRRQPRHRVRSAAQIRVWRDGA--VTLA   92 (229)
T ss_dssp             EEEHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCSGGGEEEETTSC--EEEC
T ss_pred             cccHHHHHHHcC-CCcCHHHHHHHHHHHHHHHHhhhhcccCCceecCCcceEEecCCc--eecc
Confidence            468999998876 679999999999999998877632112123345568899998887  5544

>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}

Probab=81.58  E-value=2.3  Score=30.72  Aligned_cols=85  Identities=11%  Similarity=-0.028  Sum_probs=57.1

Q ss_pred             CCccceeeeeeeEEecCCceEEEEEEccc--cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCC
Q psy320           20 PSDKLMKLLDHFQVTGINGTHVCTVTEIM--AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPE   97 (202)
Q Consensus        20 ~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~--~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~   97 (202)
                      +||+++.. .+-.    ..+.+.+.++.-  +-++..+ +     .++....+.++.+++....+++.+   .|--++|+
T Consensus        43 ~~~~Fl~~-~I~e----~eD~v~~~y~~~~~~~~f~~i-k-----~~~~~eKlr~l~ni~~l~~~~~~r---~tf~L~P~  108 (215)
T 4ann_A           43 HSPYFIDA-ELTE----LRDSFQIHYDINDNHTPFDNI-K-----SFTKNEKLRYLLNIKNLEEVNRTR---YTFVLAPD  108 (215)
T ss_dssp             CCTTBCCE-EEEE----CSSEEEEEECCCTTSEEGGGG-G-----GSCHHHHHHHHHHGGGGGGGGGSS---EECCCSGG
T ss_pred             cCCcccce-EEEE----cccEEEEEEEcCcccCCHHHH-H-----hcCHHHHHHHHHHHHHHHHHhcCc---eEEEEecc
Confidence            35677755 3333    345666666554  4455442 2     277788888888888766444443   78889999


Q ss_pred             ceeeecCCcceeEEeeccccccc
Q psy320           98 SIFFKADHVYIMTLINIQQATTH  120 (202)
Q Consensus        98 nil~~~~~~~~~~l~Dfg~a~~~  120 (202)
                      ||+++.++.  +++.-.|+-...
T Consensus       109 NL~f~~~~~--p~i~~RGik~~l  129 (215)
T 4ann_A          109 ELFFTRDGL--PIAKTRGLQNVV  129 (215)
T ss_dssp             GEEECTTSC--EEESCCEETTTB
T ss_pred             eEEEcCCCC--EEEEEccCccCC
Confidence            999998887  899888875544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	202
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	3e-10
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	4e-09
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	7e-09
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	9e-09
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	2e-08
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	3e-08
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	9e-08
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	1e-07
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	1e-07
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	2e-07
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	3e-07
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	6e-07
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	9e-07
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	1e-06
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	1e-06
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	4e-06
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	1e-05
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	1e-05
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	1e-05
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	2e-05
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	2e-05
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	3e-05
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	3e-05
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	4e-05
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	7e-05
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	8e-05
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	8e-05
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	1e-04
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	1e-04
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	1e-04
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	2e-04
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	2e-04
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	3e-04
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	3e-04
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	4e-04
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	5e-04
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	6e-04
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	6e-04
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	7e-04
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	7e-04
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	0.001
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	0.002
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	0.002
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	0.003
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	0.003
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	0.003
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	0.003

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (134), Expect = 3e-10
 Identities = 23/141 (16%), Positives = 55/141 (39%), Gaps = 5/141 (3%)

Query: 10  IKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMA-ECLCNYMIRQKFQPAPLVV 68
           ++      + P   +++++D ++        +  V E +    L + +  +  Q      
Sbjct: 55  VELHWRASQCPH--IVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTERE 112

Query: 69  AKIIVNQILEGLNHLHTKHNLVHTSIKPESIFF-KADHVYIMTLINIQQATTHQECHDQQ 127
           A  I+  I E + +LH   N+ H  +KPE++ +       I+ L +   A      +   
Sbjct: 113 ASEIMKSIGEAIQYLH-SINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLT 171

Query: 128 SSSKTKSKIFCEILEQCRLNQ 148
           +   T   +  E+L   + ++
Sbjct: 172 TPCYTPYYVAPEVLGPEKYDK 192

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (126), Expect = 4e-09
 Identities = 14/87 (16%), Positives = 34/87 (39%), Gaps = 7/87 (8%)

Query: 18  KHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQIL 77
             P   ++     F     +   +    E M     + ++++     P  +   +   ++
Sbjct: 62  NSPY--IVGFYGAFY----SDGEISICMEHMDGGSLDQVLKKA-GRIPEQILGKVSIAVI 114

Query: 78  EGLNHLHTKHNLVHTSIKPESIFFKAD 104
           +GL +L  KH ++H  +KP +I   + 
Sbjct: 115 KGLTYLREKHKIMHRDVKPSNILVNSR 141

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (124), Expect = 7e-09
 Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 12/109 (11%)

Query: 1   MHTNYATNLIKTLIEIQ-----KHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNY 55
           + T     L   ++EI       HP+  ++KLLD F        ++  + E  A    + 
Sbjct: 45  IDTKSEEELEDYMVEIDILASCDHPN--IVKLLDAFY----YENNLWILIEFCAGGAVDA 98

Query: 56  MIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKAD 104
           ++ +  +P      +++  Q L+ LN+LH  + ++H  +K  +I F  D
Sbjct: 99  VMLELERPLTESQIQVVCKQTLDALNYLH-DNKIIHRDLKAGNILFTLD 146

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 51.6 bits (123), Expect = 9e-09
 Identities = 32/152 (21%), Positives = 59/152 (38%), Gaps = 10/152 (6%)

Query: 10  IKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVA 69
           +  L ++  HP+   ++L D ++      T    V ++M +      + +K         
Sbjct: 60  VDILRKVSGHPNI--IQLKDTYE----TNTFFFLVFDLMKKGELFDYLTEK-VTLSEKET 112

Query: 70  KIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSS 129
           + I+  +LE +  LH K N+VH  +KPE+I    D    + L +   +         +  
Sbjct: 113 RKIMRALLEVICALH-KLNIVHRDLKPENILLDDD--MNIKLTDFGFSCQLDPGEKLREV 169

Query: 130 SKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI 161
             T S +  EI+E    +        VD  S 
Sbjct: 170 CGTPSYLAPEIIECSMNDNHPGYGKEVDMWST 201

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 50.5 bits (120), Expect = 2e-08
 Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 7/111 (6%)

Query: 18  KHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQIL 77
           +HP+  L+ L D F+    +   +  + E M+       +  +        A   + Q+ 
Sbjct: 81  RHPT--LVNLHDAFE----DDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVC 134

Query: 78  EGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQS 128
           +GL H+H ++N VH  +KPE+I F       + LI+             + 
Sbjct: 135 KGLCHMH-ENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKV 184

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.4 bits (119), Expect = 3e-08
 Identities = 30/84 (35%), Positives = 51/84 (60%)

Query: 21  SDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGL 80
           ++ ++KLLDHF   G NG HV  V E++ E L   + + + +  PL+  K I  Q+L GL
Sbjct: 79  ANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGL 138

Query: 81  NHLHTKHNLVHTSIKPESIFFKAD 104
           +++H +  ++HT IKPE++  +  
Sbjct: 139 DYMHRRCGIIHTDIKPENVLMEIV 162

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.8 bits (116), Expect = 9e-08
 Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 8/89 (8%)

Query: 18  KHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQIL 77
           +HP+   ++    +            V E       + +   K +P   V    + +  L
Sbjct: 73  RHPN--TIQYRGCYL----REHTAWLVMEYCLGSASDLLEVHK-KPLQEVEIAAVTHGAL 125

Query: 78  EGLNHLHTKHNLVHTSIKPESIFFKADHV 106
           +GL +LH  HN++H  +K  +I      +
Sbjct: 126 QGLAYLH-SHNMIHRDVKAGNILLSEPGL 153

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (115), Expect = 1e-07
 Identities = 24/116 (20%), Positives = 50/116 (43%), Gaps = 2/116 (1%)

Query: 10  IKTLIEIQKHPSDKLMKLLDHFQVTGIN-GTHVCTVTEIMAECLCNYMIRQKFQPAPLVV 68
           +  L  ++      +++L D   V+  +  T +  V E + + L  Y+ +      P   
Sbjct: 58  VAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTET 117

Query: 69  AKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH 124
            K ++ Q+L GL+ LH  H +VH  +KP++I   +     +    + +  + Q   
Sbjct: 118 IKDMMFQLLRGLDFLH-SHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMAL 172

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (114), Expect = 1e-07
 Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 7/87 (8%)

Query: 23  KLMKLLDHFQV-----TGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQIL 77
           ++   L H  +        + T V  + E          ++ K            + ++ 
Sbjct: 58  EIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQ-KLSKFDEQRTATYITELA 116

Query: 78  EGLNHLHTKHNLVHTSIKPESIFFKAD 104
             L++ H    ++H  IKPE++   + 
Sbjct: 117 NALSYCH-SKRVIHRDIKPENLLLGSA 142

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (113), Expect = 2e-07
 Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 4/92 (4%)

Query: 18  KHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQIL 77
           +HP+   ++  D ++ T      +  VTE+M        ++ +F+   + V +    QIL
Sbjct: 66  QHPNI--VRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLK-RFKVMKIKVLRSWCRQIL 122

Query: 78  EGLNHLHTKH-NLVHTSIKPESIFFKADHVYI 108
           +GL  LHT+   ++H  +K ++IF       +
Sbjct: 123 KGLQFLHTRTPPIIHRDLKCDNIFITGPTGSV 154

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (111), Expect = 3e-07
 Identities = 20/139 (14%), Positives = 45/139 (32%), Gaps = 7/139 (5%)

Query: 23  KLMKLLDHFQVTGING----THVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILE 78
            +++   H  +    G      +  VT+        + +        ++    I  Q  +
Sbjct: 56  GVLRKTRHVNILLFMGYSTAPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQ 115

Query: 79  GLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFC 138
           G+++LH   +++H  +K  +IF   D    + + +   AT            +    I  
Sbjct: 116 GMDYLH-AKSIIHRDLKSNNIFLHED--LTVKIGDFGLATVKSRWSGSHQFEQLSGSILW 172

Query: 139 EILEQCRLNQDFRLDPRVD 157
              E  R+        + D
Sbjct: 173 MAPEVIRMQDKNPYSFQSD 191

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (109), Expect = 6e-07
 Identities = 17/91 (18%), Positives = 40/91 (43%), Gaps = 7/91 (7%)

Query: 18  KHPSDKLMKLLDHFQVTG--INGTHVCTVTEIMAECLCNYMIR--QKFQPAPLVVAKIIV 73
            H +  +++L   F  +G   +  ++  V + + E +        +  Q  P++  K+ +
Sbjct: 71  DHCN--IVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYM 128

Query: 74  NQILEGLNHLHTKHNLVHTSIKPESIFFKAD 104
            Q+   L ++H    + H  IKP+++    D
Sbjct: 129 YQLFRSLAYIH-SFGICHRDIKPQNLLLDPD 158

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 46.2 bits (109), Expect = 9e-07
 Identities = 32/152 (21%), Positives = 60/152 (39%), Gaps = 12/152 (7%)

Query: 1   MHTNYATNLIKTLIEIQ-----KHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNY 55
           ++T Y  +      EI       HP   L+ L D F+    +   +  + E ++      
Sbjct: 62  INTPYPLDKYTVKNEISIMNQLHHPK--LINLHDAFE----DKYEMVLILEFLSGGELFD 115

Query: 56  MIRQKFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQ 115
            I  +            + Q  EGL H+H +H++VH  IKPE+I  +      + +I+  
Sbjct: 116 RIAAEDYKMSEAEVINYMRQACEGLKHMH-EHSIVHLDIKPENIMCETKKASSVKIIDFG 174

Query: 116 QATTHQECHDQQSSSKTKSKIFCEILEQCRLN 147
            AT        + ++ T      EI+++  + 
Sbjct: 175 LATKLNPDEIVKVTTATAEFAAPEIVDREPVG 206

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (107), Expect = 1e-06
 Identities = 17/112 (15%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 23  KLMKLLDHFQVTGINGT----HVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILE 78
           ++M  LD+  +  + G      +  V E+      +  +  K +  P+     +++Q+  
Sbjct: 61  QIMHQLDNPYIVRLIGVCQAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSM 120

Query: 79  GLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSS 130
           G+ +L  + N VH  +   ++     H   ++   + +A    + +    S+
Sbjct: 121 GMKYLE-EKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSA 171

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (106), Expect = 1e-06
 Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 7/87 (8%)

Query: 23  KLMKLLDHFQV-----TGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQIL 77
            + K+L+H  V         G       E  +       I       P   A+   +Q++
Sbjct: 55  CINKMLNHENVVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD-IGMPEPDAQRFFHQLM 113

Query: 78  EGLNHLHTKHNLVHTSIKPESIFFKAD 104
            G+ +LH    + H  IKPE++     
Sbjct: 114 AGVVYLH-GIGITHRDIKPENLLLDER 139

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (103), Expect = 4e-06
 Identities = 19/107 (17%), Positives = 40/107 (37%), Gaps = 9/107 (8%)

Query: 18  KHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQIL 77
           K+P+  ++  LD +      G  +  V E +A      ++ +            +  + L
Sbjct: 75  KNPN--IVNYLDSYL----VGDELWVVMEYLAGGSLTDVVTET--CMDEGQIAAVCRECL 126

Query: 78  EGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH 124
           + L  LH  + ++H  IK ++I    D    +T        T ++  
Sbjct: 127 QALEFLH-SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSK 172

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (99), Expect = 1e-05
 Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 6/90 (6%)

Query: 23  KLMKLLDHFQVTGING----THVCTVTEIMAE-CLCNYMIRQKFQPAPLVVAKIIVNQIL 77
            LMK L H ++  +        +  +TE M    L +++         +     +  QI 
Sbjct: 60  NLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIA 119

Query: 78  EGLNHLHTKHNLVHTSIKPESIFFKADHVY 107
           EG+  +  + N +H  ++  +I        
Sbjct: 120 EGMAFIE-ERNYIHRDLRAANILVSDTLSC 148

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.4 bits (99), Expect = 1e-05
 Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 6/89 (6%)

Query: 23  KLMKLLDH-----FQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQIL 77
            +M   DH      +      T V  +TE M     +  +RQ      ++    ++  I 
Sbjct: 79  SIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIA 138

Query: 78  EGLNHLHTKHNLVHTSIKPESIFFKADHV 106
            G+ +L    N VH  +   +I   ++ V
Sbjct: 139 AGMKYLA-DMNYVHRDLAARNILVNSNLV 166

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (98), Expect = 1e-05
 Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 8/91 (8%)

Query: 23  KLMKLLDH------FQVTGINGTHVCTVTEIMAE-CLCNYMIRQKFQPAPLVVAKIIVNQ 75
            +M  L H        V       +  VTE MA+  L +Y+  +                
Sbjct: 52  SVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLD 111

Query: 76  ILEGLNHLHTKHNLVHTSIKPESIFFKADHV 106
           + E + +L   +N VH  +   ++    D+V
Sbjct: 112 VCEAMEYLE-GNNFVHRDLAARNVLVSEDNV 141

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (98), Expect = 2e-05
 Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 8/93 (8%)

Query: 23  KLMKLLDHFQV-----TGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQIL 77
            +M  LDH        T  +   +               I +K         +    +I+
Sbjct: 60  DVMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYI-RKIGSFDETCTRFYTAEIV 118

Query: 78  EGLNHLHTKHNLVHTSIKPESIFFKAD-HVYIM 109
             L +LH    ++H  +KPE+I    D H+ I 
Sbjct: 119 SALEYLH-GKGIIHRDLKPENILLNEDMHIQIT 150

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.0 bits (98), Expect = 2e-05
 Identities = 15/92 (16%), Positives = 36/92 (39%), Gaps = 8/92 (8%)

Query: 10  IKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVA 69
           + +L+     P   ++ +   F         +  + ++M     +Y + Q    +   + 
Sbjct: 57  MLSLVSTGDCPF--IVCMSYAFH----TPDKLSFILDLMNGGDLHYHLSQHGVFSEADMR 110

Query: 70  KIIVNQILEGLNHLHTKHNLVHTSIKPESIFF 101
                +I+ GL H+H    +V+  +KP +I  
Sbjct: 111 FYAA-EIILGLEHMH-NRFVVYRDLKPANILL 140

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.4 bits (96), Expect = 3e-05
 Identities = 23/140 (16%), Positives = 53/140 (37%), Gaps = 13/140 (9%)

Query: 10  IKTLIEIQKHPSD----KLMKLLDH------FQVTGINGTHVCTVTEIMAECLCNYMIRQ 59
           IK      KHP      K+ K++         +  G  G +   V E++   L +     
Sbjct: 37  IKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELLGPSLEDLFNFC 96

Query: 60  KFQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKA-DHVYIMTLINIQQAT 118
             +   L    ++ +Q++  + ++H   N +H  +KP++          ++ +I+   A 
Sbjct: 97  S-RKFSLKTVLLLADQMISRIEYIH-SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAK 154

Query: 119 THQECHDQQSSSKTKSKIFC 138
            +++    Q     ++K   
Sbjct: 155 KYRDARTHQHIPYRENKNLT 174

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 3e-05
 Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 6/93 (6%)

Query: 23  KLMKLLDHFQVTGING-----THVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQIL 77
            L+K L+H  +  +         +  V E + + L  +M        PL + K  + Q+L
Sbjct: 53  SLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLL 112

Query: 78  EGLNHLHTKHNLVHTSIKPESIFFKADHVYIMT 110
           +GL   H  H ++H  +KP+++    +    + 
Sbjct: 113 QGLAFCH-SHRVLHRDLKPQNLLINTEGAIKLA 144

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 4e-05
 Identities = 29/174 (16%), Positives = 58/174 (33%), Gaps = 18/174 (10%)

Query: 18  KHPSDKLMKLLDHFQVTGINGTHVCTVTEIMA-ECLCNYMIRQKFQPAPLVVAKIIVNQI 76
           +H +  ++  +          T +  V++      L +Y+ R       ++    +    
Sbjct: 55  RHEN--ILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMI---KLALST 109

Query: 77  LEGLNHLH-------TKHNLVHTSIKPESIFFKADHVYIMT---LINIQQATTHQECHDQ 126
             GL HLH        K  + H  +K ++I  K +    +    L     + T       
Sbjct: 110 ASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAP 169

Query: 127 QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLNHQD 180
                TK  +  E+L+     + F    R D  ++ +   F EI  +C +    
Sbjct: 170 NHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGL--VFWEIARRCSIGGIH 221

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 7e-05
 Identities = 17/118 (14%), Positives = 33/118 (27%), Gaps = 24/118 (20%)

Query: 10  IKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQK--------- 60
           +K L  +  H +  ++ LL         G     +TE          +R+K         
Sbjct: 77  LKVLSYLGNHMN--IVNLLGACT----IGGPTLVITEYCCYGDLLNFLRRKRDSFICSKT 130

Query: 61  --------FQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMT 110
                        L        Q+ +G+  L    N +H  +   +I      +  + 
Sbjct: 131 SPAIMEDDELALDLEDLLSFSYQVAKGMAFLA-SKNCIHRDLAARNILLTHGRITKIC 187

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 8e-05
 Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 7/89 (7%)

Query: 23  KLMKLLDHFQVTGI-----NGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQIL 77
           KL++ L H  + G+     + +++  V + M   L   +        P  +   ++   L
Sbjct: 52  KLLQELSHPNIIGLLDAFGHKSNISLVFDFMETDLEVIIKDNSLVLTPSHIKAYML-MTL 110

Query: 78  EGLNHLHTKHNLVHTSIKPESIFFKADHV 106
           +GL +LH +H ++H  +KP ++    + V
Sbjct: 111 QGLEYLH-QHWILHRDLKPNNLLLDENGV 138

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (93), Expect = 8e-05
 Identities = 17/112 (15%), Positives = 35/112 (31%), Gaps = 5/112 (4%)

Query: 23  KLMKLLDHFQVTGINGT----HVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILE 78
             M  LDH  +  + G      +  VTE+         +R+      L        Q+ E
Sbjct: 63  NAMHSLDHRNLIRLYGVVLTPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAE 122

Query: 79  GLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSS 130
           G+ +L      +H  +   ++      +  +    + +A    + H      
Sbjct: 123 GMGYLE-SKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEH 173

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 1e-04
 Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 8/95 (8%)

Query: 18  KHPSDKLMKLLDHFQV--TGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQ 75
           +H +  ++ LLD F    T  + T    V   M   L   M  +K         + +V Q
Sbjct: 75  RHEN--VIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKHEKL---GEDRIQFLVYQ 129

Query: 76  ILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMT 110
           +L+GL ++H    ++H  +KP ++    D    + 
Sbjct: 130 MLKGLRYIH-AAGIIHRDLKPGNLAVNEDCELKIL 163

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 15/131 (11%), Positives = 42/131 (32%), Gaps = 6/131 (4%)

Query: 23  KLMKLLDHFQV-----TGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQIL 77
           ++M  L H ++       +    +C V E M     +  +R +           +   + 
Sbjct: 52  EVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVC 111

Query: 78  EGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIF 137
           EG+ +L  +  ++H  +   +     + V  ++   + +     +      +        
Sbjct: 112 EGMAYLE-EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWAS 170

Query: 138 CEILEQCRLNQ 148
            E+    R + 
Sbjct: 171 PEVFSFSRYSS 181

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.8 bits (92), Expect = 1e-04
 Identities = 11/92 (11%), Positives = 33/92 (35%), Gaps = 5/92 (5%)

Query: 23  KLMKLLDHFQVTGINGTHVCTVTEIMAECLCN----YMIRQKFQPAPLVVAKIIVNQILE 78
           ++++ ++   +  +  +        M          +   ++        A+    QI+ 
Sbjct: 93  RILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVL 152

Query: 79  GLNHLHTKHNLVHTSIKPESIFFKADHVYIMT 110
              +LH   +L++  +KPE++         +T
Sbjct: 153 TFEYLH-SLDLIYRDLKPENLLIDQQGYIQVT 183

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 2e-04
 Identities = 14/123 (11%), Positives = 34/123 (27%), Gaps = 29/123 (23%)

Query: 10  IKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQK--------- 60
           +K + ++  H +  ++ LL    ++G     +  + E          +R K         
Sbjct: 91  LKMMTQLGSHEN--IVNLLGACTLSG----PIYLIFEYCCYGDLLNYLRSKREKFSEDEI 144

Query: 61  -------------FQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVY 107
                                      Q+ +G+  L    + VH  +   ++      V 
Sbjct: 145 EYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLE-FKSCVHRDLAARNVLVTHGKVV 203

Query: 108 IMT 110
            + 
Sbjct: 204 KIC 206

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.6 bits (89), Expect = 2e-04
 Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 8/89 (8%)

Query: 23  KLMKLLDHFQV------TGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQI 76
           +  KLL            G  G H   V +++       ++    +   +    +   Q+
Sbjct: 52  RTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLL-GPSLEDLLDLCGRKFSVKTVAMAAKQM 110

Query: 77  LEGLNHLHTKHNLVHTSIKPESIFFKADH 105
           L  +  +H + +LV+  IKP++      +
Sbjct: 111 LARVQSIH-EKSLVYRDIKPDNFLIGRPN 138

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (88), Expect = 3e-04
 Identities = 20/166 (12%), Positives = 44/166 (26%), Gaps = 13/166 (7%)

Query: 23  KLMKLLDHFQVTGINGT----HVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILE 78
             M+  DH  +  + G      V  + E+         ++ +     L    +   Q+  
Sbjct: 60  LTMRQFDHPHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLST 119

Query: 79  GLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFC 138
            L +L      VH  I   ++   ++    +    + +       +           +  
Sbjct: 120 ALAYLE-SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAP 178

Query: 139 EILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCRLNHQDFRPD 184
           E +         R     D     +     EIL       Q  + +
Sbjct: 179 ESI------NFRRFTSASDVWMFGV--CMWEILMHGVKPFQGVKNN 216

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.2 bits (88), Expect = 3e-04
 Identities = 18/87 (20%), Positives = 40/87 (45%), Gaps = 8/87 (9%)

Query: 18  KHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQIL 77
            HP   ++++   FQ    +   +  + + + E    + + +K Q  P  VAK    ++ 
Sbjct: 62  THPF--IIRMWGTFQ----DAQQIFMIMDYI-EGGELFSLLRKSQRFPNPVAKFYAAEVC 114

Query: 78  EGLNHLHTKHNLVHTSIKPESIFFKAD 104
             L +LH   ++++  +KPE+I    +
Sbjct: 115 LALEYLH-SKDIIYRDLKPENILLDKN 140

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.2 bits (88), Expect = 4e-04
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 7/90 (7%)

Query: 23  KLMKLLDH-----FQVTGINGTHVCTVTEIMA-ECLCNYMIRQKFQPAPLVVAKIIVNQI 76
            +MK + H                  +TE M    L +Y+     Q    VV   +  QI
Sbjct: 65  AVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQI 124

Query: 77  LEGLNHLHTKHNLVHTSIKPESIFFKADHV 106
              + +L  K N +H  +   +     +H+
Sbjct: 125 SSAMEYLE-KKNFIHRDLAARNCLVGENHL 153

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 5e-04
 Identities = 20/116 (17%), Positives = 38/116 (32%), Gaps = 8/116 (6%)

Query: 23  KLMKLLDHFQVTGING-----THVCTVTEIMAECLCNYMIRQ--KFQPAPLVVAKIIVNQ 75
           K++    H  + GIN      T        +   L    + +  K Q          + Q
Sbjct: 58  KILLRFRHENIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKLLKTQHLSNDHICYFLYQ 117

Query: 76  ILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSK 131
           IL GL ++H   N++H  +KP ++         +    + +       H    +  
Sbjct: 118 ILRGLKYIH-SANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEY 172

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (86), Expect = 6e-04
 Identities = 18/112 (16%), Positives = 43/112 (38%), Gaps = 6/112 (5%)

Query: 23  KLMKLLDHFQVTGINGT----HVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILE 78
            +M+ LD+  +  + G         V E+      N  ++Q  +         +V+Q+  
Sbjct: 60  NVMQQLDNPYIVRMIGICEAESWMLVMEMAELGPLNKYLQQN-RHVKDKNIIELVHQVSM 118

Query: 79  GLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSS 130
           G+ +L  + N VH  +   ++     H   ++   + +A    E + +  + 
Sbjct: 119 GMKYLE-ESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTH 169

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 37.1 bits (85), Expect = 6e-04
 Identities = 9/88 (10%), Positives = 30/88 (34%), Gaps = 2/88 (2%)

Query: 23  KLMKLLDHFQVTGINGTHVCTVTEIMAECLC-NYMIRQKFQPAPLVVAKIIVNQILEGLN 81
                 +   +  + G  V  V       +    +  ++     +     +++ ILE + 
Sbjct: 58  IRSARNEFRALQKLQGLAVPKVYAWEGNAVLMELIDAKELYRVRVENPDEVLDMILEEVA 117

Query: 82  HLHTKHNLVHTSIKPESIFFKADHVYIM 109
             +    +VH  +   ++    + ++I+
Sbjct: 118 KFY-HRGIVHGDLSQYNVLVSEEGIWII 144

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (85), Expect = 7e-04
 Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 14/96 (14%)

Query: 23  KLMKLLDH-------FQVTGINGTHVCTVTEIMA-ECLCNYMIRQKFQPAPL--VVAKII 72
            L++ L H        ++     T +  V E      L + + +   +   L       +
Sbjct: 55  NLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRV 114

Query: 73  VNQILEGLNHLHTK----HNLVHTSIKPESIFFKAD 104
           + Q+   L   H +    H ++H  +KP ++F    
Sbjct: 115 MTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGK 150

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 37.2 bits (85), Expect = 7e-04
 Identities = 16/93 (17%), Positives = 36/93 (38%), Gaps = 7/93 (7%)

Query: 23  KLMKLLDHFQV-----TGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQIL 77
            ++K L H  +            +  V E + + L   +   +      V AK  + Q+L
Sbjct: 52  SILKELKHSNIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCE-GGLESVTAKSFLLQLL 110

Query: 78  EGLNHLHTKHNLVHTSIKPESIFFKADHVYIMT 110
            G+ + H    ++H  +KP+++    +    + 
Sbjct: 111 NGIAYCH-DRRVLHRDLKPQNLLINREGELKIA 142

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 24/136 (17%), Positives = 55/136 (40%), Gaps = 10/136 (7%)

Query: 10  IKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVA 69
           IK L  ++  P+  ++ L D  +        V     ++ E + N   +Q +Q       
Sbjct: 80  IKILENLRGGPN--IITLADIVK------DPVSRTPALVFEHVNNTDFKQLYQTLTDYDI 131

Query: 70  KIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSS 129
           +  + +IL+ L++ H    ++H  +KP ++    +H  +  LI+   A  +    +    
Sbjct: 132 RFYMYEILKALDYCH-SMGIMHRDVKPHNVMIDHEHRKLR-LIDWGLAEFYHPGQEYNVR 189

Query: 130 SKTKSKIFCEILEQCR 145
             ++     E+L   +
Sbjct: 190 VASRYFKGPELLVDYQ 205

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (83), Expect = 0.002
 Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 6/89 (6%)

Query: 23  KLMKLLDHFQVTGINGT----HVCTVTEIMAE-CLCNYMIRQKFQPAPLVVAKIIVNQIL 77
           ++MK L H ++  +        +  VTE M++  L +++  +  +   L     +  QI 
Sbjct: 64  QVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIA 123

Query: 78  EGLNHLHTKHNLVHTSIKPESIFFKADHV 106
            G+ ++  + N VH  ++  +I    + V
Sbjct: 124 SGMAYVE-RMNYVHRDLRAANILVGENLV 151

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 0.002
 Identities = 27/144 (18%), Positives = 55/144 (38%), Gaps = 8/144 (5%)

Query: 10  IKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVA 69
            + L  I++ P   L+ L   FQ      T +  + + +        + Q+ +       
Sbjct: 79  RQVLEHIRQSPF--LVTLHYAFQ----TETKLHLILDYINGGELFTHLSQRERF-TEHEV 131

Query: 70  KIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSS 129
           +I V +I+  L HLH K  +++  IK E+I   ++   ++T   + +     E       
Sbjct: 132 QIYVGEIVLALEHLH-KLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDF 190

Query: 130 SKTKSKIFCEILEQCRLNQDFRLD 153
             T   +  +I+       D  +D
Sbjct: 191 CGTIEYMAPDIVRGGDSGHDKAVD 214

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 18/109 (16%), Positives = 39/109 (35%), Gaps = 8/109 (7%)

Query: 23  KLMKLLDHFQVTGINGTHVCTVTE-------IMAECLCNYMIRQKFQPAPLVVAKIIVNQ 75
            LMK ++H  +  +        T        ++ E +   + +             ++ Q
Sbjct: 68  VLMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQ 127

Query: 76  ILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH 124
           +L G+ HLH    ++H  +KP +I  K+D    +    + +        
Sbjct: 128 MLCGIKHLH-SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMM 175

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (81), Expect = 0.003
 Identities = 15/115 (13%), Positives = 33/115 (28%), Gaps = 6/115 (5%)

Query: 23  KLMKLLDHFQV-----TGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQIL 77
           K+M  L H ++            +  +TE MA       +R+            +   + 
Sbjct: 51  KVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVC 110

Query: 78  EGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKT 132
           E + +L      +H  +   +       V  ++   + +     E      S   
Sbjct: 111 EAMEYLE-SKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFP 164

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (80), Expect = 0.003
 Identities = 19/140 (13%), Positives = 36/140 (25%), Gaps = 16/140 (11%)

Query: 23  KLMKLLDHFQV-----TGINGTHVCTVTEIMAECLCNYMIRQ---------KFQPAPLVV 68
            +MK  +   V         G     + E+M        +R             P  L  
Sbjct: 75  SVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSK 134

Query: 69  AKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKAD-HVYIMTLINIQQATTHQECHDQQ 127
              +  +I +G+ +L+  +  VH  +   +     D  V I      +            
Sbjct: 135 MIQMAGEIADGMAYLN-ANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGG 193

Query: 128 SSSKTKSKIFCEILEQCRLN 147
                   +  E L+     
Sbjct: 194 KGLLPVRWMSPESLKDGVFT 213

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.003
 Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 7/93 (7%)

Query: 23  KLMKLLDHFQV-----TGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQIL 77
            L+K L H  +        +   +  V E   + L  Y         P +V   +  Q+L
Sbjct: 53  CLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFLF-QLL 111

Query: 78  EGLNHLHTKHNLVHTSIKPESIFFKADHVYIMT 110
           +GL   H   N++H  +KP+++    +    + 
Sbjct: 112 KGLGFCH-SRNVLHRDLKPQNLLINRNGELKLA 143

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	202
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	99.98
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	99.98
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.98
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	99.98
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.97
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	99.97
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	99.97
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.97
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	99.97
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	99.97
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	99.97
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	99.97
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	99.97
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.97
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.97
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	99.97
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	99.97
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.97
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	99.96
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.96
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.94
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.71
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	97.83
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	97.15
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	96.88
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	95.75
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	95.35
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	91.4

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-38  Score=245.31  Aligned_cols=158  Identities=18%  Similarity=0.235  Sum_probs=132.0

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ....+|+++|+++ +||  ||++++++|.    +..+.|+||||+ +++|.+++.+.+  ++++..++.++.|++.||.|
T Consensus        49 ~~~~~Ei~il~~l-~Hp--nIv~l~~~~~----~~~~~~iVmEy~~gg~L~~~l~~~~--~l~~~~~~~~~~qil~aL~y  119 (322)
T d1s9ja_          49 NQIIRELQVLHEC-NSP--YIVGFYGAFY----SDGEISICMEHMDGGSLDQVLKKAG--RIPEQILGKVSIAVIKGLTY  119 (322)
T ss_dssp             HHHHHHGGGGGGC-CCT--TBCCEEEEEE----CSSEEEEEEECCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CCCcEEEEEE----ECCEEEEEEEcCCCCcHHHHHhhcC--CCCHHHHHHHHHHHHHHHHH
Confidence            3456788888888 455  9999999999    677999999999 899999998764  49999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      ||+++||+||||||+|||++.++.  +||+|||+|+..... ......||+.|+|||++..      ..|+.++||||+|
T Consensus       120 LH~~~~IiHRDiKP~NILl~~~~~--vkl~DFGla~~~~~~-~~~~~~GT~~Y~APEvl~~------~~y~~~~DiWSlG  190 (322)
T d1s9ja_         120 LREKHKIMHRDVKPSNILVNSRGE--IKLCDFGVSGQLIDS-MANSFVGTRSYMSPERLQG------THYSVQSDIWSMG  190 (322)
T ss_dssp             HHHHHCCCCSCCSGGGEEECTTCC--EEECCCCCCHHHHHH-TC---CCSSCCCCHHHHHC------SCCCTTHHHHHHH
T ss_pred             HHHhCCEEccccCHHHeeECCCCC--EEEeeCCCccccCCC-ccccccCCccccCchHHcC------CCCCcHHHHHHHH
Confidence            997448999999999999998877  999999999976432 2335689999999999984      4488999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFRPDP  185 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~  185 (202)
                      +      ++..+..|..||.+..
T Consensus       191 v------il~ell~G~~Pf~~~~  207 (322)
T d1s9ja_         191 L------SLVEMAVGRYPIPPPD  207 (322)
T ss_dssp             H------HHHHHHHSSCCSSCCC
T ss_pred             H------HHHHHHHCCCCCCCCC
Confidence            7      3446666999987644

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-37  Score=237.47  Aligned_cols=155  Identities=17%  Similarity=0.242  Sum_probs=130.5

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +...+|+++++++ +||  ||++++++|.    +....|+||||+ +++|.+++.+.   ++++..++.++.|++.||.|
T Consensus        62 ~~~~~E~~il~~l-~Hp--nIv~~~~~~~----~~~~~~ivmEy~~gg~L~~~~~~~---~l~~~~~~~i~~qi~~aL~y  131 (293)
T d1yhwa1          62 ELIINEILVMREN-KNP--NIVNYLDSYL----VGDELWVVMEYLAGGSLTDVVTET---CMDEGQIAAVCRECLQALEF  131 (293)
T ss_dssp             HHHHHHHHHHHHC-CCT--TBCCEEEEEE----ETTEEEEEEECCTTCBHHHHHHHS---CCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CEeeEeEEEE----ECCEEEEEEEecCCCcHHHHhhcc---CCCHHHHHHHHHHHHHHHHH
Confidence            4567899999998 565  9999999999    466899999999 99999988663   49999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      ||++ ||+||||||+|||++.++.  +||+|||+|+...... ......||+.|+|||++..      ..|+.++||||+
T Consensus       132 LH~~-~iiHrDiKp~NILl~~~~~--vkl~DFG~a~~~~~~~~~~~~~~gt~~Y~aPE~~~~------~~~~~~~DiwSl  202 (293)
T d1yhwa1         132 LHSN-QVIHRDIKSDNILLGMDGS--VKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTR------KAYGPKVDIWSL  202 (293)
T ss_dssp             HHHT-TEECCCCSGGGEEECTTCC--EEECCCTTCEECCSTTCCBCCCCSCGGGCCHHHHSS------SCBCTHHHHHHH
T ss_pred             HHHC-CCcccCCcHHHeEECCCCc--EeeccchhheeeccccccccccccCCCccChhhhcC------CCCCchhceehH
Confidence            9996 9999999999999998877  9999999999875433 2335679999999999983      348889999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCC
Q psy320          162 KMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      |+.      +..++.|.+||..
T Consensus       203 Gvi------lyemltG~~Pf~~  218 (293)
T d1yhwa1         203 GIM------AIEMIEGEPPYLN  218 (293)
T ss_dssp             HHH------HHHHHHSSCTTTT
T ss_pred             hHH------HHHHhhCCCCCCC
Confidence            873      3355567777753

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-37  Score=234.92  Aligned_cols=154  Identities=15%  Similarity=0.243  Sum_probs=128.7

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +...+|+++++.+ +||  ||++++++|.    ++...|+||||+ +|+|.+++.+..  ++++..++.++.|++.||.|
T Consensus        51 ~~~~~E~~il~~l-~hp--nIv~~~~~~~----~~~~~~ivmEy~~~g~L~~~l~~~~--~l~e~~~~~i~~qi~~al~~  121 (263)
T d2j4za1          51 HQLRREVEIQSHL-RHP--NILRLYGYFH----DATRVYLILEYAPLGTVYRELQKLS--KFDEQRTATYITELANALSY  121 (263)
T ss_dssp             HHHHHHHHHHHTC-CCT--TBCCEEEEEE----CSSEEEEEEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc-CCC--CCCeEEEEEE----ECCEEEEEEeecCCCcHHHHHhhcC--CCCHHHHHHHHHHHHHHHHH
Confidence            3456788888888 555  9999999999    677999999999 899999998764  49999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      ||++ ||+||||||+|||++.++.  +||+|||+|+..... ......||+.|+|||++..      ..|+.++||||+|
T Consensus       122 lH~~-~ivHrDiKp~Nill~~~~~--~kl~DFG~a~~~~~~-~~~~~~Gt~~Y~APE~~~~------~~~~~~~DiwSlG  191 (263)
T d2j4za1         122 CHSK-RVIHRDIKPENLLLGSAGE--LKIADFGWSVHAPSS-RRTTLCGTLDYLPPEMIEG------RMHDEKVDLWSLG  191 (263)
T ss_dssp             HHHT-TCCCCCCCGGGEEECTTSC--EEECCCCSCSCCCCC-CCEETTEEGGGCCHHHHTT------CCCCTTHHHHHHH
T ss_pred             HHHC-CeeeeeeccccceecCCCC--EeecccceeeecCCC-cccccCCCCcccCHHHHcC------CCCCchhhhhhHh
Confidence            9996 9999999999999998877  999999999876432 2234679999999999984      3488899999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +..+      .+..|.+||.
T Consensus       192 vily------ell~G~~Pf~  205 (263)
T d2j4za1         192 VLCY------EFLVGKPPFE  205 (263)
T ss_dssp             HHHH------HHHHSSCTTC
T ss_pred             HHHH------HHhcCCCCCC
Confidence            6322      4445666664

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-37  Score=234.31  Aligned_cols=155  Identities=19%  Similarity=0.233  Sum_probs=127.0

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ....+|+++++++ +||  ||++++++|.    +....|+||||+ +|+|.+++...+  .+++..++.++.|++.||.|
T Consensus        53 ~~~~~E~~il~~l-~Hp--nIv~l~~~~~----~~~~~~ivmEy~~gg~L~~~~~~~~--~l~e~~~~~~~~qi~~al~y  123 (288)
T d1uu3a_          53 PYVTRERDVMSRL-DHP--FFVKLYFTFQ----DDEKLYFGLSYAKNGELLKYIRKIG--SFDETCTRFYTAEIVSALEY  123 (288)
T ss_dssp             HHHHHHHHHHHHC-CST--TBCCEEEEEE----CSSEEEEEECCCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc-CCC--CeeEEEEEEE----ECCEEEEEEEccCCCCHHHhhhccC--CCCHHHHHHHHHHHHHHHHh
Confidence            3467899999988 555  9999999999    677999999999 899999988764  59999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC---CCCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD---QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      ||+. ||+||||||+|||++.++.  +||+|||+|+.......   .....||+.|+|||++..      ..|+.++|||
T Consensus       124 lH~~-~iiHrDiKp~NIll~~~~~--vkl~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~~~------~~~~~~~Diw  194 (288)
T d1uu3a_         124 LHGK-GIIHRDLKPENILLNEDMH--IQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTE------KSACKSSDLW  194 (288)
T ss_dssp             HHHT-TEECSCCSGGGEEECTTSC--EEECCCTTCEECC----------CCCCGGGCCHHHHHT------CCCCHHHHHH
T ss_pred             hccc-cEEcCcCCccccccCCCce--EEecccccceecccCCcccccccccCCccccCceeecc------CCCCccccee
Confidence            9996 9999999999999998877  99999999987653322   224579999999999984      3488899999


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCC
Q psy320          160 SIKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       160 sl~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      |+|+..+      .+..|.+||.
T Consensus       195 SlGvily------ell~g~~Pf~  211 (288)
T d1uu3a_         195 ALGCIIY------QLVAGLPPFR  211 (288)
T ss_dssp             HHHHHHH------HHHHSSCSSC
T ss_pred             hhhHHHH------HHhhCCCCCC
Confidence            9986322      4444666654

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=2.7e-36  Score=229.98  Aligned_cols=163  Identities=20%  Similarity=0.265  Sum_probs=139.4

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|++++++++.||  ||++++++|.    ++.+.|+||||+ +++|.+++...+  ++++..++.++.||+.||.||
T Consensus        55 ~~~~E~~~l~~l~~hp--nIv~~~~~~~----~~~~~~ivmE~~~~g~L~~~l~~~~--~l~e~~~~~~~~qi~~al~~l  126 (277)
T d1phka_          55 ATLKEVDILRKVSGHP--NIIQLKDTYE----TNTFFFLVFDLMKKGELFDYLTEKV--TLSEKETRKIMRALLEVICAL  126 (277)
T ss_dssp             HHHHHHHHHHHHTTCT--TBCCEEEEEE----CSSEEEEEEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCC--CeEEEEeecc----cCcceEEEEEcCCCchHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHH
Confidence            4678999999996677  9999999999    677999999999 899999998764  599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |++ |++||||||+|||++.++.  +||+|||+|+............||+.|++||.+..........++.++|+||+|+
T Consensus       127 H~~-~ivHrDlkp~Nill~~~~~--~kl~DFG~a~~~~~~~~~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGv  203 (277)
T d1phka_         127 HKL-NIVHRDLKPENILLDDDMN--IKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGV  203 (277)
T ss_dssp             HHT-TEECSCCSGGGEEECTTCC--EEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHH
T ss_pred             HHc-CCcccccccceEEEcCCCC--eEEccchheeEccCCCceeeeeccCCCCCHHHhhccccccCCCCCchheEcccch
Confidence            995 9999999999999998877  9999999999876554455678999999999998776656667888999999987


Q ss_pred             HHHHHHHHHHHHhcCCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      .      +-.+..|++||..+
T Consensus       204 i------lyeml~g~~Pf~~~  218 (277)
T d1phka_         204 I------MYTLLAGSPPFWHR  218 (277)
T ss_dssp             H------HHHHHHSSCSSCCS
T ss_pred             h------hhhhccCCCCCCCC
Confidence            3      33555577766543

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-37  Score=236.38  Aligned_cols=156  Identities=17%  Similarity=0.176  Sum_probs=129.3

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++++++ +||  ||+++++++.    ++...|+||||+ +++|.+++.+.  +.+++..++.++.|++.||.||
T Consensus        49 ~~~~Ei~~l~~l-~Hp--nIv~~~~~~~----~~~~~~ivmEy~~gg~L~~~l~~~--~~l~e~~~~~i~~qi~~al~yl  119 (271)
T d1nvra_          49 NIKKEICINKML-NHE--NVVKFYGHRR----EGNIQYLFLEYCSGGELFDRIEPD--IGMPEPDAQRFFHQLMAGVVYL  119 (271)
T ss_dssp             CHHHHHHHHHTC-CCT--TBCCEEEEEE----ETTEEEEEEECCTTEEGGGGSBTT--TBCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCC--CEeeEeeeec----cCceeEEEEeccCCCcHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHH
Confidence            356899998888 555  9999999999    466999999999 89999988654  4599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc---CCCCCCCCccchhhHHHHhhhhccCCCC-CCCcchh
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH---DQQSSSKTKSKIFCEILEQCRLNQDFRL-DPRVDPT  159 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~---~~~~~~~~~~~~ape~~~~~~~~~~~~~-~~~~Diw  159 (202)
                      |++ ||+||||||+|||++.++.  +||+|||+|+......   ......||+.|+|||++...      .+ +.++|||
T Consensus       120 H~~-~IiHrDiKp~NILl~~~~~--~KL~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~------~~~~~~~Diw  190 (271)
T d1nvra_         120 HGI-GITHRDIKPENLLLDERDN--LKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRR------EFHAEPVDVW  190 (271)
T ss_dssp             HHT-TEECSCCCGGGEEECTTCC--EEECCCTTCEECEETTEECCBCCCCSCGGGSCTHHHHCS------SBCHHHHHHH
T ss_pred             HHc-CCccCcccHHHEEECCCCC--EEEccchhheeeccCCccccccceeeCcCccCHhHhcCC------CCCCCceeee
Confidence            996 9999999999999998877  9999999999765322   22346799999999999833      34 4589999


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCCCC
Q psy320          160 SIKMYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       160 sl~~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      |+|+.      +-.+..|.++|...
T Consensus       191 SlGvi------lyeml~G~~pf~~~  209 (271)
T d1nvra_         191 SCGIV------LTAMLAGELPWDQP  209 (271)
T ss_dssp             HHHHH------HHHHHHSSCSCSSS
T ss_pred             HhHHH------HHHHHhCCCCCCCC
Confidence            99973      33566688888543

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.6e-37  Score=233.69  Aligned_cols=161  Identities=19%  Similarity=0.239  Sum_probs=130.7

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +.+.+|+++++++ +||  ||++++++|.    +....|+||||+ +|+|.+++.+.. +.+++..++.++.|++.||.|
T Consensus        54 ~~~~~E~~il~~l-~Hp--nIv~l~~~~~----~~~~~~lvmEy~~~g~L~~~~~~~~-~~l~e~~~~~i~~qi~~gL~y  125 (288)
T d2jfla1          54 EDYMVEIDILASC-DHP--NIVKLLDAFY----YENNLWILIEFCAGGAVDAVMLELE-RPLTESQIQVVCKQTLDALNY  125 (288)
T ss_dssp             GGTHHHHHHHHHC-CCT--TBCCEEEEEE----ETTEEEEEEECCTTEEHHHHHHHHT-SCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CCCeEEEEEe----eCCeEEEEEecCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHH
Confidence            3457899999999 555  9999999999    466899999999 999999976653 459999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      ||++ ||+||||||+|||++.++.  +||+|||+|+...... ......||+.|+|||++..... ....|+.++|+||+
T Consensus       126 lH~~-~ivHrDiKp~NIll~~~~~--~Kl~DFG~a~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~-~~~~y~~k~DiwSl  201 (288)
T d2jfla1         126 LHDN-KIIHRDLKAGNILFTLDGD--IKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETS-KDRPYDYKADVWSL  201 (288)
T ss_dssp             HHHT-TEECCCCSGGGEEECTTSC--EEECCCTTCEECHHHHHHHTCCCSCCTTCCHHHHTTCST-TTSSTTTHHHHHHH
T ss_pred             HHHC-CEEEeecChhheeECCCCC--EEEEechhhhccCCCcccccccccccccCCHHHHhhccc-CCCCCChhhhHHHH
Confidence            9996 9999999999999998887  9999999998765432 2235679999999999864321 23457889999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCC
Q psy320          162 KMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      |+..+      .+..|.+||.
T Consensus       202 Gvily------emltg~~Pf~  216 (288)
T d2jfla1         202 GITLI------EMAEIEPPHH  216 (288)
T ss_dssp             HHHHH------HHHHSSCTTT
T ss_pred             HHHHH------HHhhCCCCCC
Confidence            86322      4444666664

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-36  Score=229.24  Aligned_cols=156  Identities=22%  Similarity=0.322  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+++++++ +||  ||++++++|.....+...+|+||||+ +++|.+++.+..  .+++..++.++.|++.||.||
T Consensus        54 ~~~~E~~il~~l-~Hp--nIv~~~~~~~~~~~~~~~~~ivmE~~~~g~L~~~l~~~~--~~~~~~~~~~~~qi~~gl~yL  128 (270)
T d1t4ha_          54 RFKEEAEMLKGL-QHP--NIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRFK--VMKIKVLRSWCRQILKGLQFL  128 (270)
T ss_dssp             HHHHHHHHHTTC-CCT--TBCCEEEEEEEESSSCEEEEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCC--CeeeEEEEEeeccccCCEEEEEEeCCCCCcHHHHHhccc--cccHHHHHHHHHHHHHHHHHH
Confidence            356788888888 455  99999999986554567899999999 999999998764  499999999999999999999


Q ss_pred             HhhCC--ccccCCCCCceeeec-CCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           84 HTKHN--LVHTSIKPESIFFKA-DHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        84 h~~~~--ivH~dl~p~nil~~~-~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      |++ +  |+||||||+|||++. ++.  +||+|||+|+.... .......||+.|+|||++.       ..|+.++||||
T Consensus       129 H~~-~~~IiHrDiKp~NILl~~~~~~--~Kl~DFGla~~~~~-~~~~~~~GT~~Y~aPE~~~-------~~~~~~~DIwS  197 (270)
T d1t4ha_         129 HTR-TPPIIHRDLKCDNIFITGPTGS--VKIGDLGLATLKRA-SFAKAVIGTPEFMAPEMYE-------EKYDESVDVYA  197 (270)
T ss_dssp             HTS-SSCCCCSCCCGGGEEESSTTSC--EEECCTTGGGGCCT-TSBEESCSSCCCCCGGGGG-------TCCCTHHHHHH
T ss_pred             HHC-CCCEEeCCcChhhceeeCCCCC--EEEeecCcceeccC-CccCCcccCccccCHHHhC-------CCCCCcCchhh
Confidence            996 8  999999999999964 455  99999999986432 2223468999999999876       23788999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCC
Q psy320          161 IKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       161 l~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +|+.      +-.+..|.+||.
T Consensus       198 lGvi------lyel~~g~~Pf~  213 (270)
T d1t4ha_         198 FGMC------MLEMATSEYPYS  213 (270)
T ss_dssp             HHHH------HHHHHHSSCTTT
T ss_pred             HHHH------HHHHHHCCCCCC
Confidence            9873      335666877775

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-36  Score=235.61  Aligned_cols=141  Identities=20%  Similarity=0.215  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++|+++ +||  ||++++++|.    +...+|+||||+ +|+|.+++.+..  ++++..++.++.|++.||.||
T Consensus        51 ~~~~E~~il~~l-~hp--~Iv~l~~~~~----~~~~~~iv~ey~~gg~L~~~~~~~~--~~~e~~~~~~~~qil~al~yl  121 (337)
T d1o6la_          51 HTVTESRVLQNT-RHP--FLTALKYAFQ----THDRLCFVMEYANGGELFFHLSRER--VFTEERARFYGAEIVSALEYL  121 (337)
T ss_dssp             HHHHHHHHHHSC-CCT--TBCCEEEEEE----CSSEEEEEEECCTTCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCC--CEEEEEeeec----cccccccceeccCCCchhhhhhccc--CCcHHHHHHHHHHHhhhhhhh
Confidence            456788888887 455  9999999999    677999999999 999999998874  599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |++ ||+||||||+|||++.++.  +||+|||+|+...... .....+||+.|+|||++..      ..|+.++|+||+|
T Consensus       122 H~~-~iiHRDlKP~NILl~~~g~--vkl~DFG~a~~~~~~~~~~~~~~GT~~Y~aPE~~~~------~~y~~~~DiwSlG  192 (337)
T d1o6la_         122 HSR-DVVYRDIKLENLMLDKDGH--IKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLED------NDYGRAVDWWGLG  192 (337)
T ss_dssp             HHT-TCBCCCCCGGGEEECTTSC--EEECCCTTCBCSCCTTCCBCCCEECGGGCCGGGGSS------SCBCTTHHHHHHH
T ss_pred             hhc-CccccccCHHHeEecCCCC--EEEeecccccccccCCcccccceeCHHHhhhhhccC------CCCChhhcccchh
Confidence            996 9999999999999998877  9999999998765433 2335689999999999883      4588999999997


Q ss_pred             H
Q psy320          163 M  163 (202)
Q Consensus       163 ~  163 (202)
                      +
T Consensus       193 v  193 (337)
T d1o6la_         193 V  193 (337)
T ss_dssp             H
T ss_pred             h
Confidence            6

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.5e-36  Score=234.57  Aligned_cols=155  Identities=20%  Similarity=0.253  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+++++++ +||  ||++++++|.    ++...|+||||+ +++|.+++.+.  +++++..+..++.|++.||.|||
T Consensus        54 ~~~Ei~il~~l-~Hp--nIv~l~~~~~----~~~~~~lvmE~~~gg~L~~~l~~~--~~l~e~~~~~~~~qi~~al~ylH  124 (307)
T d1a06a_          54 MENEIAVLHKI-KHP--NIVALDDIYE----SGGHLYLIMQLVSGGELFDRIVEK--GFYTERDASRLIFQVLDAVKYLH  124 (307)
T ss_dssp             -CHHHHHHHTC-CCT--TBCCEEEEEE----CSSEEEEEECCCCSCBHHHHHHTC--SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCC--CCCcEEEEEE----ECCEEEEEEeccCCCcHHHhhhcc--cCCCHHHHHHHHHHHHHHHHhhh
Confidence            45789999888 555  9999999999    677999999999 89999999765  45999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecC-CcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKAD-HVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~-~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      ++ ||+||||||+|||+... ....+||+|||+|+............||+.|+|||++..      ..|+.++|+||+|+
T Consensus       125 ~~-~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~GT~~y~APE~~~~------~~~~~~~DiwSlGv  197 (307)
T d1a06a_         125 DL-GIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQ------KPYSKAVDCWSIGV  197 (307)
T ss_dssp             HT-TCCCSCCCGGGEEESSSSTTCCEEECCC------------------CTTSCHHHHTT------CCCCTHHHHHHHHH
T ss_pred             hc-eeeeEEecccceeecccCCCceEEEeccceeEEccCCCeeeeeeeCccccCcHHHcC------CCCCcHHHhhhhhH
Confidence            96 99999999999999652 223499999999987654444445689999999999984      34888999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~  182 (202)
                      ..      ..+..|.+||.
T Consensus       198 il------yell~g~~Pf~  210 (307)
T d1a06a_         198 IA------YILLCGYPPFY  210 (307)
T ss_dssp             HH------HHHHHSSCSCC
T ss_pred             HH------HHHHhCCCCCC
Confidence            32      24445666664

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-36  Score=237.16  Aligned_cols=167  Identities=17%  Similarity=0.187  Sum_probs=139.1

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ....+|++++.++.+||  ||++++++|.........+|+||||| ||+|.+++.+.+..++++..++.++.|++.||.|
T Consensus        49 ~~~~~E~~~~~~~~~hp--nIv~l~~~~~~~~~~~~~~~ivmEy~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~y  126 (335)
T d2ozaa1          49 PKARREVELHWRASQCP--HIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQY  126 (335)
T ss_dssp             HHHHHHHHHHHHHTTST--TBCCEEEEEEEEETTEEEEEEEEECCCSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCC--CCCeEEEEEeecccCCCEEEEEEECCCCCcHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHH
Confidence            45678998887775666  99999999985443467899999999 8999999987655679999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCC-cceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADH-VYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~-~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      ||+. ||+||||||+|||++... ...+||+|||+|+............||+.|+|||++....      |+.++|+||+
T Consensus       127 lH~~-~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~------y~~~~DiwSl  199 (335)
T d2ozaa1         127 LHSI-NIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEK------YDKSCDMWSL  199 (335)
T ss_dssp             HHHT-TEECCCCSGGGEEESCSSTTCCEEECCCTTCEECCCCCCCCCCSCCCSSCCCCCCCGGG------GSHHHHHHHH
T ss_pred             HHHc-CCccccccccccccccccccccccccccceeeeccCCCccccccCCcccCCcHHHcCCC------CCHHHHHHhh
Confidence            9996 999999999999998643 2349999999999876555555678999999999988544      8889999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCC
Q psy320          162 KMYTTFCEILEQCRLNHQDFRPDP  185 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~  185 (202)
                      |+.      +..+..|.+||....
T Consensus       200 Gvi------ly~lltg~~Pf~~~~  217 (335)
T d2ozaa1         200 GVI------MYILLCGYPPFYSNH  217 (335)
T ss_dssp             HHH------HHHHTTSSCSCEETT
T ss_pred             chh------HHHHhhCCCCCCCCC
Confidence            973      336777999996543

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=1.7e-36  Score=237.98  Aligned_cols=158  Identities=21%  Similarity=0.258  Sum_probs=130.7

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +...+|+++|+++ +||  ||++++++|.    +....|+||||+ +|+|.+++.... +++++..++.++.||+.||.|
T Consensus        68 ~~~~~E~~il~~l-~Hp--nIv~~~~~~~----~~~~~~ivmE~~~gg~L~~~l~~~~-~~l~e~~~~~i~~qi~~aL~y  139 (350)
T d1koaa2          68 ETVRKEIQTMSVL-RHP--TLVNLHDAFE----DDNEMVMIYEFMSGGELFEKVADEH-NKMSEDEAVEYMRQVCKGLCH  139 (350)
T ss_dssp             HHHHHHHHHHHHT-CCT--TBCCEEEEEE----ETTEEEEEECCCCSCBHHHHHTCTT-SCBCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CCCcEEEEEE----ECCEEEEEEEcCCCCCHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHH
Confidence            3456899999999 555  9999999999    466999999999 999999985443 469999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      ||++ |++||||||+|||+..+....+||+|||+|+............||+.|+|||++..      ..|+.++||||+|
T Consensus       140 lH~~-~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~~~~~~~~~gT~~Y~aPEv~~~------~~~~~~~DiwSlG  212 (350)
T d1koaa2         140 MHEN-NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEG------KPVGYYTDMWSVG  212 (350)
T ss_dssp             HHHT-TEECCCCCGGGEEESSTTSCCEEECCCTTCEECCTTSCEEEECSCTTTCCHHHHHT------CCBCHHHHHHHHH
T ss_pred             HHhc-CCeeeeechhHeeeccCCCCeEEEeecchheecccccccceecCcccccCHHHHcC------CCCChhHhhhhhh
Confidence            9996 99999999999999765444599999999988765444445689999999999984      3478899999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +.      +..+..|.++|.
T Consensus       213 vi------lyell~G~~Pf~  226 (350)
T d1koaa2         213 VL------SYILLSGLSPFG  226 (350)
T ss_dssp             HH------HHHHHHSSCSSC
T ss_pred             HH------HHHHHhCCCCCC
Confidence            73      235555777765

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=4.2e-36  Score=232.18  Aligned_cols=141  Identities=18%  Similarity=0.238  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+++++++ +||  ||++++++|.    +....|+||||+ +++|..++...  +++++..++.++.|++.||.||
T Consensus        61 ~~~~Ei~il~~l-~Hp--nIv~~~~~~~----~~~~~~iv~E~~~~g~l~~~~~~~--~~l~e~~~~~i~~qi~~aL~yL  131 (309)
T d1u5ra_          61 DIIKEVRFLQKL-RHP--NTIQYRGCYL----REHTAWLVMEYCLGSASDLLEVHK--KPLQEVEIAAVTHGALQGLAYL  131 (309)
T ss_dssp             HHHHHHHHHTTC-CCT--TBCCEEEEEE----ETTEEEEEEECCSEEHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHC-CCC--CEeeEEEEEE----ECCEEEEEEEecCCCchHHHHHhC--CCCCHHHHHHHHHHHHHHHHHH
Confidence            356788888888 455  9999999998    466899999999 88887666554  4599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |++ ||+||||||+|||++.++.  +||+|||+|+....   .....||+.|+|||++....   ...|+.++||||+|+
T Consensus       132 H~~-~iiHrDiKp~NILl~~~~~--~Kl~DFG~a~~~~~---~~~~~GT~~Y~APE~~~~~~---~~~y~~~~DiwSlGv  202 (309)
T d1u5ra_         132 HSH-NMIHRDVKAGNILLSEPGL--VKLGDFGSASIMAP---ANSFVGTPYWMAPEVILAMD---EGQYDGKVDVWSLGI  202 (309)
T ss_dssp             HHT-TCBCCCCSGGGEEEETTTE--EEECCCTTCBSSSS---BCCCCSCGGGCCHHHHTTTT---SCCBCTHHHHHHHHH
T ss_pred             HhC-CEeccCCCcceEEECCCCC--EEEeecccccccCC---CCccccCccccCHHHHhccC---CCCcCchhhhhhHHH
Confidence            996 9999999999999998876  99999999987643   33567999999999997432   345788999999986

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-36  Score=230.58  Aligned_cols=158  Identities=14%  Similarity=0.170  Sum_probs=122.8

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +.+.+|+++++++ +||  ||+++++++.     ....++||||+ +|+|.+++.... +++++..+..++.|++.||.|
T Consensus        49 ~~~~~E~~~l~~l-~Hp--nIv~~~~~~~-----~~~~~lv~Ey~~~g~L~~~l~~~~-~~~~~~~~~~i~~qi~~gl~y  119 (276)
T d1uwha_          49 QAFKNEVGVLRKT-RHV--NILLFMGYST-----APQLAIVTQWCEGSSLYHHLHIIE-TKFEMIKLIDIARQTAQGMDY  119 (276)
T ss_dssp             HHHHHHHHHHTTC-CCT--TBCCEEEEEC-----SSSCEEEEECCCEEEHHHHHHTSC-CCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CEeeeeEEEe-----ccEEEEEEecCCCCCHHHHHhhcc-CCCCHHHHHHHHHHHHHHHHH
Confidence            3556788888888 455  9999999865     34579999999 899999997654 459999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC---CCCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD---QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      ||++ +|+||||||+|||++.++.  +||+|||+|+.......   .....||+.|+|||++....   ...|+.++|||
T Consensus       120 LH~~-~ivHrDlKp~NiLl~~~~~--~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~---~~~~~~~sDiw  193 (276)
T d1uwha_         120 LHAK-SIIHRDLKSNNIFLHEDLT--VKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQD---KNPYSFQSDVY  193 (276)
T ss_dssp             HHHT-TCCCSCCCGGGEEEETTSS--EEECCCCCSCC------------CCCCGGGCCHHHHTTCS---SCCCCHHHHHH
T ss_pred             HhcC-CEeccccCHHHEEEcCCCC--EEEccccceeeccccCCcccccccccCcccCCHHHHhccc---CCCCCchhhhh
Confidence            9996 9999999999999998877  99999999987653221   22457999999999997432   34577899999


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCC
Q psy320          160 SIKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       160 sl~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      |+|+..+      .+..|..||.
T Consensus       194 S~Gv~l~------el~tg~~Pf~  210 (276)
T d1uwha_         194 AFGIVLY------ELMTGQLPYS  210 (276)
T ss_dssp             HHHHHHH------HHHHSSCTTT
T ss_pred             hhHHHHH------HHHHCCCCCC
Confidence            9986322      3334655553

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-35  Score=230.07  Aligned_cols=152  Identities=16%  Similarity=0.238  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+.+++++ +||  ||++++++|.    +....|+||||+ +++|..++....  .+++..++.++.|++.||.||
T Consensus        50 ~~~~E~~il~~l-~Hp--nIv~~~~~~~----~~~~~~ivmE~~~gg~l~~~~~~~~--~~~~~~~~~~~~qi~~al~~l  120 (316)
T d1fota_          50 HTNDERLMLSIV-THP--FIIRMWGTFQ----DAQQIFMIMDYIEGGELFSLLRKSQ--RFPNPVAKFYAAEVCLALEYL  120 (316)
T ss_dssp             HHHHHHHHHHSC-CBT--TBCCEEEEEE----CSSEEEEEECCCCSCBHHHHHHHTS--SCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc-cCc--ChhheeeeEe----eCCeeeeEeeecCCccccccccccc--cccccHHHHHHHHHHHhhhhh
Confidence            456788888887 455  9999999999    677999999999 999999887764  489999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |++ ||+||||||+|||++.++.  +||+|||+|+....  .....+||+.|+|||++..      ..|+.++|+||+|+
T Consensus       121 H~~-~iiHrDiKp~NILl~~~g~--vkL~DFG~a~~~~~--~~~~~~Gt~~Y~APE~l~~------~~y~~~~DiwSlGv  189 (316)
T d1fota_         121 HSK-DIIYRDLKPENILLDKNGH--IKITDFGFAKYVPD--VTYTLCGTPDYIAPEVVST------KPYNKSIDWWSFGI  189 (316)
T ss_dssp             HTT-TEECCCCCGGGEEECTTSC--EEECCCSSCEECSS--CBCCCCSCTTTCCHHHHTT------CCBCTTHHHHHHHH
T ss_pred             ccC-cEEccccCchheeEcCCCC--EEEecCccceEecc--ccccccCcccccCHHHHcC------CCCCchhhccccch
Confidence            996 9999999999999998877  99999999988643  2335689999999999973      44888999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~  182 (202)
                      ..+      .++.|..||.
T Consensus       190 ily------emltG~~Pf~  202 (316)
T d1fota_         190 LIY------EMLAGYTPFY  202 (316)
T ss_dssp             HHH------HHHHSSCTTC
T ss_pred             hHH------HHHhCCCCCC
Confidence            322      4444555554

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.8e-35  Score=232.28  Aligned_cols=158  Identities=17%  Similarity=0.206  Sum_probs=131.5

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      +.+|..+++.++...||||++++++|.    .....|+||||+ +++|.+++.+..  .+++..++.++.|++.||.|||
T Consensus        51 ~~~e~~~~~~l~~~~hpnIv~l~~~~~----~~~~~~ivmE~~~gg~L~~~l~~~~--~~~e~~~~~~~~qi~~aL~ylH  124 (364)
T d1omwa3          51 ALNERIMLSLVSTGDCPFIVCMSYAFH----TPDKLSFILDLMNGGDLHYHLSQHG--VFSEADMRFYAAEIILGLEHMH  124 (364)
T ss_dssp             HHHHHHHHHHHSSSCCTTBCCEEEEEE----CSSEEEEEECCCCSCBHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCcEEEEEEEEE----ECCEEEEEEEecCCCcHHHHHHhcc--cccHHHHHHHHHHHHHHHHHHH
Confidence            456666677775445779999999999    577999999999 999999998764  4999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~  164 (202)
                      ++ |++||||||+|||++.++.  +||+|||+|+..... ......||+.|+|||++..     +..|++++|+||+|+.
T Consensus       125 ~~-~iiHrDlKP~NILl~~~g~--iKl~DFGla~~~~~~-~~~~~~GT~~y~APE~~~~-----~~~~~~~~DiwSlGvi  195 (364)
T d1omwa3         125 NR-FVVYRDLKPANILLDEHGH--VRISDLGLACDFSKK-KPHASVGTHGYMAPEVLQK-----GVAYDSSADWFSLGCM  195 (364)
T ss_dssp             HT-TEECCCCSGGGEEECSSSC--EEECCCTTCEECSSS-CCCSCCSCGGGCCHHHHST-----TCCCCTHHHHHHHHHH
T ss_pred             HC-CccceeeccceeEEcCCCc--EEEeeeceeeecCCC-cccccccccccchhHHhhc-----CCCCCcccchhHHHHH
Confidence            96 9999999999999998877  999999999876532 2335689999999999862     2347889999999973


Q ss_pred             HHHHHHHHHHHhcCCCCCCC
Q psy320          165 TTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~  184 (202)
                            +..++.|.+||...
T Consensus       196 ------lyemltG~~Pf~~~  209 (364)
T d1omwa3         196 ------LFKLLRGHSPFRQH  209 (364)
T ss_dssp             ------HHHHHHSSCSSCSS
T ss_pred             ------HHHHHhCCCCCCCC
Confidence                  33666688888653

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=3e-36  Score=236.83  Aligned_cols=145  Identities=22%  Similarity=0.288  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++|+++ +||  ||++++++|.    ++..+|+||||+ +++|.+.+.... .++++..++.++.|++.||.||
T Consensus        72 ~~~~Ei~il~~l-~Hp--nIv~~~~~~~----~~~~~~ivmE~~~gg~L~~~~~~~~-~~l~e~~~~~i~~qi~~aL~yl  143 (352)
T d1koba_          72 TVKNEISIMNQL-HHP--KLINLHDAFE----DKYEMVLILEFLSGGELFDRIAAED-YKMSEAEVINYMRQACEGLKHM  143 (352)
T ss_dssp             HHHHHHHHHTTC-CST--TBCCEEEEEE----CSSEEEEEEECCCCCBHHHHTTCTT-CCBCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCC--CCCcEEEEEE----ECCEEEEEEEcCCCChHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHH
Confidence            446788888888 455  9999999999    677999999999 999998775543 4599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |++ ||+||||||+|||++......+||+|||+|+............+++.|+|||++..      ..|+.++|+||+|+
T Consensus       144 H~~-~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~DiwSlGv  216 (352)
T d1koba_         144 HEH-SIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDR------EPVGFYTDMWAIGV  216 (352)
T ss_dssp             HHT-TEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSCEEEECSSGGGCCHHHHTT------CCBCHHHHHHHHHH
T ss_pred             HHC-CeeecccccccccccccCCCeEEEeecccceecCCCCceeeccCcccccCHHHHcC------CCCCCccchHHHHH
Confidence            996 99999999999999854444599999999998765444445689999999999984      44888999999986


Q ss_pred             H
Q psy320          164 Y  164 (202)
Q Consensus       164 ~  164 (202)
                      .
T Consensus       217 i  217 (352)
T d1koba_         217 L  217 (352)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-35  Score=227.15  Aligned_cols=158  Identities=22%  Similarity=0.251  Sum_probs=132.9

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +.+.+|+++|+++ +||  ||++++++|.    +....|+||||+ +++|.+++....  ++++..++.++.|++.||.|
T Consensus        58 ~~~~~E~~il~~l-~Hp--nIv~~~~~~~----~~~~~~iv~E~~~gg~L~~~i~~~~--~l~~~~~~~~~~qi~~al~y  128 (293)
T d1jksa_          58 EDIEREVSILKEI-QHP--NVITLHEVYE----NKTDVILILELVAGGELFDFLAEKE--SLTEEEATEFLKQILNGVYY  128 (293)
T ss_dssp             HHHHHHHHHHHHC-CCT--TBCCEEEEEE----CSSEEEEEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CCCcEEEEEE----ECCEEEEEEEcCCCccccchhcccc--ccchhHHHHHHHHHHHHHHh
Confidence            4567899999999 565  9999999999    677999999999 899999998764  59999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCc--ceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHV--YIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~--~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      ||+. ||+||||||+|||++.++.  ..+|++|||+|.............+++.|+|||++..      ..++.++|+||
T Consensus       129 LH~~-~ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~~~~~~~~~~~~~~t~~y~APE~~~~------~~~~~~~DiwS  201 (293)
T d1jksa_         129 LHSL-QIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNY------EPLGLEADMWS  201 (293)
T ss_dssp             HHHT-TEECCCCSGGGEEESCSSSSSCCEEECCCTTCEECTTSCBCSCCCCCGGGCCHHHHTT------CCBCTHHHHHH
T ss_pred             hhhc-ceeecccccceEEEecCCCcccceEecchhhhhhcCCCccccccCCCCcccCHHHHcC------CCCCCcccchh
Confidence            9996 9999999999999987653  2499999999988765555556789999999999984      34788999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCC
Q psy320          161 IKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       161 l~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +|+.      +..+..|.+||..
T Consensus       202 lGvi------lyell~g~~Pf~~  218 (293)
T d1jksa_         202 IGVI------TYILLSGASPFLG  218 (293)
T ss_dssp             HHHH------HHHHHHSSCSSCC
T ss_pred             hhHH------HHHHHcCCCCCCC
Confidence            9873      2245557666653

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-36  Score=229.73  Aligned_cols=158  Identities=16%  Similarity=0.190  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK--FQPAPLVVAKIIVNQILEGLN   81 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~--~~~~~~~~~~~~~~qi~~~l~   81 (202)
                      .+.+|+++++++ +||  ||+++++++...  ....+|+||||+ +|+|.+++.+..  .+.+++..++.++.|++.||.
T Consensus        49 ~~~~E~~il~~l-~Hp--nIv~~~~~~~~~--~~~~~~ivmEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~  123 (269)
T d2java1          49 MLVSEVNLLREL-KHP--NIVRYYDRIIDR--TNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALK  123 (269)
T ss_dssp             HHHHHHHHTTSC-CCT--TBCCEEEEEEC------CEEEEEECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHC-CCC--CEeeEEEEEEeC--CCCEEEEEEecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHH
Confidence            355678777777 455  999999998631  245689999999 999999986532  356999999999999999999


Q ss_pred             HHHhhCC-----ccccCCCCCceeeecCCcceeEEeecccccccccccC-CCCCCCCccchhhHHHHhhhhccCCCCCCC
Q psy320           82 HLHTKHN-----LVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD-QQSSSKTKSKIFCEILEQCRLNQDFRLDPR  155 (202)
Q Consensus        82 ~lh~~~~-----ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~-~~~~~~~~~~~ape~~~~~~~~~~~~~~~~  155 (202)
                      |||++ |     |+||||||+|||++.++.  +||+|||+|+....... .....||+.|+|||++..      ..|+.+
T Consensus       124 ylH~~-~~~~~~IiHrDiKp~NIll~~~~~--vkl~DFG~a~~~~~~~~~~~~~~gt~~Y~APE~l~~------~~~~~~  194 (269)
T d2java1         124 ECHRR-SDGGHTVLHRDLKPANVFLDGKQN--VKLGDFGLARILNHDTSFAKAFVGTPYYMSPEQMNR------MSYNEK  194 (269)
T ss_dssp             HHHHH-CC---------CCGGGEEECTTSC--EEECCHHHHHHC-----------CCCSCCCHHHHTT------CCCCHH
T ss_pred             HHHHh-cCCCCCEEeCcCchhhcCcCCCCc--EEEeeccceeecccCCCccccCCCCcccCCHHHHcC------CCCChH
Confidence            99996 6     999999999999998877  99999999998754332 234689999999999973      348889


Q ss_pred             cchhhHHHHHHHHHHHHHHHhcCCCCC
Q psy320          156 VDPTSIKMYTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       156 ~Diwsl~~~~~~~~~~~~~~~~~~~~~  182 (202)
                      +||||+|+..+      .+..|.+||.
T Consensus       195 ~DIwSlGvily------el~tg~~Pf~  215 (269)
T d2java1         195 SDIWSLGCLLY------ELCALMPPFT  215 (269)
T ss_dssp             HHHHHHHHHHH------HHHHSSCSCC
T ss_pred             HHHHhhCHHHH------HHhhCCCCCC
Confidence            99999986322      4444666654

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4e-36  Score=230.20  Aligned_cols=145  Identities=18%  Similarity=0.200  Sum_probs=123.9

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +.+.+|+++++++ +||  ||++++++|.    ++...++||||+ +|+|.+++.......+++..+..++.|++.||.|
T Consensus        58 ~~~~~E~~il~~l-~Hp--nIv~~~~~~~----~~~~~~iv~E~~~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~y  130 (287)
T d1opja_          58 EEFLKEAAVMKEI-KHP--NLVQLLGVCT----REPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEY  130 (287)
T ss_dssp             HHHHHHHHHHHHC-CCT--TBCCEEEEEC----SSSSCEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CEecCCccEe----eCCeeEEEeecccCcchHHHhhhccccchHHHHHHHHHHHHHHHHHH
Confidence            4567899999999 555  9999999998    567899999999 8999999987766679999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC--CCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ--QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~--~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      ||++ ||+||||||+|||++.++.  +||+|||+|+........  ....+++.|+|||.+...      .|+.++||||
T Consensus       131 LH~~-~iiHrDlKp~NILl~~~~~--~Kl~DFG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~------~~~~k~DiwS  201 (287)
T d1opja_         131 LEKK-NFIHRDLAARNCLVGENHL--VKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYN------KFSIKSDVWA  201 (287)
T ss_dssp             HHHT-TCCCSCCSGGGEEECGGGC--EEECCCCCTTTCCSSSSEEETTEEECGGGCCHHHHHHC------CCSHHHHHHH
T ss_pred             HHHC-CcccCccccCeEEECCCCc--EEEccccceeecCCCCceeeccccccccccChHHHcCC------CCCchhhhhh
Confidence            9996 9999999999999998876  999999999876543222  123578899999999844      3888999999


Q ss_pred             HHHH
Q psy320          161 IKMY  164 (202)
Q Consensus       161 l~~~  164 (202)
                      +|+.
T Consensus       202 ~Gv~  205 (287)
T d1opja_         202 FGVL  205 (287)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9763

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-35  Score=228.60  Aligned_cols=143  Identities=14%  Similarity=0.164  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+++|+++ +||  ||++++++|.    .+...++||||+ +|+|.+++.... +.+++..+..++.|++.||.||
T Consensus        73 ~~~~E~~~l~~l-~Hp--nIv~l~g~~~----~~~~~~iv~Ey~~~g~L~~~~~~~~-~~l~~~~~~~i~~qia~gl~yL  144 (299)
T d1jpaa_          73 DFLSEASIMGQF-DHP--NVIHLEGVVT----KSTPVMIITEFMENGSLDSFLRQND-GQFTVIQLVGMLRGIAAGMKYL  144 (299)
T ss_dssp             HHHHHHHHHTTC-CCT--TBCCEEEEEC----SSSSCEEEEECCTTEEHHHHHHTTT-TCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCC--CCccEEEEEe----eCCEEEEEEEecCCCcceeeecccc-CCCCHHHHHHHHHHHHHHHHHH
Confidence            456788888888 455  9999999998    566899999999 999999887643 4599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC------CCCCCccchhhHHHHhhhhccCCCCCCCcc
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ------SSSKTKSKIFCEILEQCRLNQDFRLDPRVD  157 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~------~~~~~~~~~ape~~~~~~~~~~~~~~~~~D  157 (202)
                      |++ +++||||||+|||++.++.  +||+|||+|+.........      ...+++.|+|||.+..      ..++.++|
T Consensus       145 H~~-~iiHrDlKp~NILl~~~~~--~Kl~DFGla~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~------~~~~~~sD  215 (299)
T d1jpaa_         145 ADM-NYVHRDLAARNILVNSNLV--CKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQY------RKFTSASD  215 (299)
T ss_dssp             HHT-TCCCSCCCGGGEEECTTCC--EEECCC-----------------------CGGGSCHHHHHS------CCCCHHHH
T ss_pred             hhC-CCccCccccceEEECCCCc--EEECCcccceEccCCCCcceeeecccccCCccccCHHHHhc------CCCCcccc
Confidence            996 9999999999999998877  9999999998765432211      2357889999999883      44888999


Q ss_pred             hhhHHHH
Q psy320          158 PTSIKMY  164 (202)
Q Consensus       158 iwsl~~~  164 (202)
                      |||+|+.
T Consensus       216 vwS~Gvv  222 (299)
T d1jpaa_         216 VWSYGIV  222 (299)
T ss_dssp             HHHHHHH
T ss_pred             cccchHH
Confidence            9999763

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-35  Score=224.78  Aligned_cols=144  Identities=15%  Similarity=0.225  Sum_probs=113.3

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +.+.+|+++++++ +||  ||++++++|.    .....++||||+ +|+|.+++.... ..+++..+..++.|++.||.|
T Consensus        45 ~~~~~E~~~l~~l-~Hp--nIv~~~g~~~----~~~~~~lv~E~~~~g~L~~~l~~~~-~~~~~~~~~~i~~qia~gl~~  116 (263)
T d1sm2a_          45 EDFIEEAEVMMKL-SHP--KLVQLYGVCL----EQAPICLVFEFMEHGCLSDYLRTQR-GLFAAETLLGMCLDVCEGMAY  116 (263)
T ss_dssp             HHHHHHHHHHHHC-CCT--TBCCEEEEEC----SSSSCEEEEECCTTCBHHHHHHTTT-TCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc-CCC--Ccccccceec----cCCceEEEEEecCCCcHHHHhhccc-cCCCHHHHHHHHHHHHHHHHh
Confidence            4567899999999 555  9999999998    566899999999 999999987653 458999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC--CCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ--QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~--~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      +|++ +|+||||||+|||++.++.  +||+|||+|+........  ....+|+.|+|||.+..      ..|+.++|+||
T Consensus       117 lH~~-~iiHrDlKp~Nill~~~~~--~Kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~l~~------~~~~~k~DVwS  187 (263)
T d1sm2a_         117 LEEA-CVIHRDLAARNCLVGENQV--IKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSF------SRYSSKSDVWS  187 (263)
T ss_dssp             HHHT-TCCCTTCSGGGEEECGGGC--EEECSCC------------------CTTSCCHHHHTT------CCCCHHHHHHH
T ss_pred             hhcc-ceeecccchhheeecCCCC--eEecccchheeccCCCceeecceecCcccCChHHhcC------CCCCchhhhcc
Confidence            9996 9999999999999998876  999999999876543222  23568899999999884      34888999999


Q ss_pred             HHHH
Q psy320          161 IKMY  164 (202)
Q Consensus       161 l~~~  164 (202)
                      +|+.
T Consensus       188 ~Gvi  191 (263)
T d1sm2a_         188 FGVL  191 (263)
T ss_dssp             HHHH
T ss_pred             hHHH
Confidence            9753

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-35  Score=224.95  Aligned_cols=142  Identities=12%  Similarity=0.173  Sum_probs=117.9

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +.+.+|+++++++ +||  ||++++++|.    .+ ..++||||+ +|+|.+++.+.  +.+++..+..++.|++.||.|
T Consensus        53 ~~~~~E~~il~~l-~Hp--nIv~~~g~~~----~~-~~~lvmE~~~~g~L~~~l~~~--~~l~~~~~~~i~~qi~~gl~y  122 (277)
T d1xbba_          53 DELLAEANVMQQL-DNP--YIVRMIGICE----AE-SWMLVMEMAELGPLNKYLQQN--RHVKDKNIIELVHQVSMGMKY  122 (277)
T ss_dssp             HHHHHHHHHHHTC-CCT--TBCCEEEEEE----SS-SEEEEEECCTTEEHHHHHHHC--TTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CCceEEEEec----cC-CEEEEEEcCCCCcHHHHHhhc--cCCCHHHHHHHHHHHHHHHhh
Confidence            3467889998888 455  9999999986    23 468999999 99999999876  459999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC----CCCCCCCccchhhHHHHhhhhccCCCCCCCcch
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD----QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDP  158 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~----~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Di  158 (202)
                      ||++ ||+||||||+|||++.++.  +|++|||+|+.......    .....+|+.|+|||.+....      ++.++||
T Consensus       123 lH~~-~iiHrDlKp~Nill~~~~~--~kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~------~~~~sDi  193 (277)
T d1xbba_         123 LEES-NFVHRDLAARNVLLVTQHY--AKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYK------FSSKSDV  193 (277)
T ss_dssp             HHHT-TEECSCCSGGGEEEEETTE--EEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHHHCE------EEHHHHH
T ss_pred             HHhC-CcccCCCcchhhcccccCc--ccccchhhhhhccccccccccccccCCCceecCchhhcCCC------CCchhhh
Confidence            9996 9999999999999998877  99999999987643221    12347889999999998544      7789999


Q ss_pred             hhHHHH
Q psy320          159 TSIKMY  164 (202)
Q Consensus       159 wsl~~~  164 (202)
                      ||+|+.
T Consensus       194 wS~Gv~  199 (277)
T d1xbba_         194 WSFGVL  199 (277)
T ss_dssp             HHHHHH
T ss_pred             ccchhh
Confidence            999763

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-35  Score=230.44  Aligned_cols=158  Identities=13%  Similarity=0.132  Sum_probs=128.0

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC---------------------C
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK---------------------F   61 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~---------------------~   61 (202)
                      ..+.+|++++.++.+||  |||+++++|.    +....|+||||+ +|+|.+++....                     .
T Consensus        85 ~~~~~E~~~l~~l~~Hp--nIv~l~~~~~----~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (325)
T d1rjba_          85 EALMSELKMMTQLGSHE--NIVNLLGACT----LSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDL  158 (325)
T ss_dssp             HHHHHHHHHHHHHCCCT--TBCCEEEEEC----SSSSCEEEEECCTTCBHHHHHHTTTTCC-------------------
T ss_pred             HHHHHHHHHHHHhcCCC--cEeEEEEEEe----eCCeEEEEEEcCCCCcHHHHHHhccCCCcchhhhhcccccccccccc
Confidence            45678999999986666  9999999998    566899999999 999999997543                     1


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC---CCCCCccchhh
Q psy320           62 QPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ---SSSKTKSKIFC  138 (202)
Q Consensus        62 ~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~---~~~~~~~~~ap  138 (202)
                      +.+++..++.++.|++.||.|||++ +|+||||||+|||++.++.  +||+|||+|+.........   ...+|+.|+||
T Consensus       159 ~~l~~~~~~~i~~qi~~gl~yLH~~-~IiHRDlKp~Nill~~~~~--~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aP  235 (325)
T d1rjba_         159 NVLTFEDLLCFAYQVAKGMEFLEFK-SCVHRDLAARNVLVTHGKV--VKICDFGLARDIMSDSNYVVRGNARLPVKWMAP  235 (325)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHT-TEEETTCSGGGEEEETTTE--EEECCCGGGSCGGGCTTSEEETTEEECGGGCCH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhC-CeeeccCchhccccccCCe--EEEeeccccccccCCCceeeeccccCCCccCCh
Confidence            3488999999999999999999996 9999999999999998876  9999999998765433221   34578999999


Q ss_pred             HHHHhhhhccCCCCCCCcchhhHHHHHHHHHHHHHHH-hcCCCCC
Q psy320          139 EILEQCRLNQDFRLDPRVDPTSIKMYTTFCEILEQCR-LNHQDFR  182 (202)
Q Consensus       139 e~~~~~~~~~~~~~~~~~Diwsl~~~~~~~~~~~~~~-~~~~~~~  182 (202)
                      |.+...      .|+.++||||+|+..+      .+. .|.+||.
T Consensus       236 E~l~~~------~~~~~~DiwS~Gvil~------emlt~g~~Pf~  268 (325)
T d1rjba_         236 ESLFEG------IYTIKSDVWSYGILLW------EIFSLGVNPYP  268 (325)
T ss_dssp             HHHHHC------CCCHHHHHHHHHHHHH------HHTTTSCCSST
T ss_pred             HHHcCC------CCCcceeccchhHHHH------HHHhCCCCCCC
Confidence            999844      3888999999987322      333 3666664

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.2e-35  Score=229.16  Aligned_cols=152  Identities=17%  Similarity=0.178  Sum_probs=127.8

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+++|+.+ +||  ||++++++|.    .....++||||+ +++|.+++.+..  .+++..++.++.|++.||.||
T Consensus        87 ~~~~E~~il~~l-~hp--nIv~~~~~~~----~~~~~~~v~e~~~~g~l~~~l~~~~--~l~e~~~~~i~~qi~~aL~yL  157 (350)
T d1rdqe_          87 HTLNEKRILQAV-NFP--FLVKLEFSFK----DNSNLYMVMEYVAGGEMFSHLRRIG--RFSEPHARFYAAQIVLTFEYL  157 (350)
T ss_dssp             HHHHHHHHHTTC-CCT--TBCCEEEEEE----CSSEEEEEEECCTTCBHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc-CCC--cEeecccccc----cccccccccccccccchhhhHhhcC--CCCHHHHHHHHHHHHHHHHHH
Confidence            456788888877 455  9999999999    677999999999 999999998774  499999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |+. ||+||||||+|||++.++.  +||+|||+|+....  ......||+.|+|||++..      ..|+.++|+||+|+
T Consensus       158 H~~-~iiHRDIKP~NILl~~~g~--ikL~DFG~a~~~~~--~~~~~~Gt~~Y~APE~~~~------~~~~~~~DiwSlGv  226 (350)
T d1rdqe_         158 HSL-DLIYRDLKPENLLIDQQGY--IQVTDFGFAKRVKG--RTWTLCGTPEALAPEIILS------KGYNKAVDWWALGV  226 (350)
T ss_dssp             HHT-TEECCCCSGGGEEECTTSC--EEECCCTTCEECSS--CBCCCEECGGGCCHHHHTT------CCBCTHHHHHHHHH
T ss_pred             HhC-CEecCcCCHHHcccCCCCC--EEeeeceeeeeccc--ccccccCccccCCHHHHcC------CCCCccccccchhH
Confidence            996 9999999999999998877  99999999988743  2334679999999999984      34888999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~  182 (202)
                      ..+      .+..|.+||.
T Consensus       227 ily------emltG~~Pf~  239 (350)
T d1rdqe_         227 LIY------EMAAGYPPFF  239 (350)
T ss_dssp             HHH------HHHHSSCSSC
T ss_pred             HHH------HHHhCCCCCC
Confidence            322      4445666664

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-35  Score=224.72  Aligned_cols=143  Identities=13%  Similarity=0.220  Sum_probs=119.5

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +.+.+|+++++++ +||  ||+++++++.    . ...|+||||+ +|+|.+++.... +.+++..+..++.|++.||.|
T Consensus        54 ~~~~~E~~il~~l-~Hp--nIv~l~g~~~----~-~~~~lvmE~~~~g~L~~~l~~~~-~~l~~~~~~~i~~qi~~gL~y  124 (285)
T d1u59a_          54 EEMMREAQIMHQL-DNP--YIVRLIGVCQ----A-EALMLVMEMAGGGPLHKFLVGKR-EEIPVSNVAELLHQVSMGMKY  124 (285)
T ss_dssp             HHHHHHHHHHHHC-CCT--TBCCEEEEEE----S-SSEEEEEECCTTEEHHHHHTTCT-TTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CEeeEeeeec----c-CeEEEEEEeCCCCcHHHHhhccc-cCCCHHHHHHHHHHHHHHHHH
Confidence            3467899999999 555  9999999986    2 2478999999 899999875443 459999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC----CCCCCCCccchhhHHHHhhhhccCCCCCCCcch
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD----QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDP  158 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~----~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Di  158 (202)
                      ||++ ||+||||||+|||++.++.  +||+|||+|+.......    .....+|+.|+|||.+....      ++.++||
T Consensus       125 lH~~-~iiHrDlKp~Nill~~~~~--~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~------~~~ksDV  195 (285)
T d1u59a_         125 LEEK-NFVHRDLAARNVLLVNRHY--AKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRK------FSSRSDV  195 (285)
T ss_dssp             HHHT-TEECCCCSGGGEEEEETTE--EEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHHHCE------ECHHHHH
T ss_pred             HHhC-CeecCcCchhheeeccCCc--eeeccchhhhcccccccccccccccccCccccChHHHhCCC------CCccchh
Confidence            9996 9999999999999998876  99999999987654221    12346888999999998544      7889999


Q ss_pred             hhHHHH
Q psy320          159 TSIKMY  164 (202)
Q Consensus       159 wsl~~~  164 (202)
                      ||+|+.
T Consensus       196 wS~Gv~  201 (285)
T d1u59a_         196 WSYGVT  201 (285)
T ss_dssp             HHHHHH
T ss_pred             hcchHH
Confidence            999863

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-35  Score=228.47  Aligned_cols=158  Identities=16%  Similarity=0.166  Sum_probs=130.8

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|+++|+++ +||  ||++++++|.    +..++|+||||+ +++|.+++...+ .++++..++.++.|++.||.||
T Consensus        47 ~~~~Ei~il~~l-~Hp--nIv~~~~~~~----~~~~~~lvmE~~~gg~L~~~i~~~~-~~l~e~~~~~i~~qi~~al~yL  118 (321)
T d1tkia_          47 LVKKEISILNIA-RHR--NILHLHESFE----SMEELVMIFEFISGLDIFERINTSA-FELNEREIVSYVHQVCEALQFL  118 (321)
T ss_dssp             HHHHHHHHHHHS-CCT--TBCCEEEEEE----ETTEEEEEECCCCCCBHHHHHTSSS-CCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCC--CCCeEEEEEE----ECCEEEEEEecCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHH
Confidence            456899999988 555  9999999999    466999999999 899999997653 3599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |+. ||+||||||+|||++.++...++++|||+++............+++.|++||......      |+.++|+||+|+
T Consensus       119 H~~-~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~~~~~~~~~~t~~y~ape~~~~~~------~~~~~DiWSlGv  191 (321)
T d1tkia_         119 HSH-NIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDV------VSTATDMWSLGT  191 (321)
T ss_dssp             HHT-TEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCEEEEEESCGGGSCHHHHTTCE------ECHHHHHHHHHH
T ss_pred             HHc-CCCcccccccceeecCCCceEEEEcccchhhccccCCcccccccccccccchhccCCC------CCchhhcccHHH
Confidence            996 9999999999999987665569999999998875443334567899999999988443      788999999986


Q ss_pred             HHHHHHHHHHHHhcCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~  183 (202)
                      .      +..+..|.+||..
T Consensus       192 i------ly~ll~G~~Pf~~  205 (321)
T d1tkia_         192 L------VYVLLSGINPFLA  205 (321)
T ss_dssp             H------HHHHHHSSCTTCC
T ss_pred             H------HHHHHhCCCCCCC
Confidence            3      3355557777654

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-35  Score=224.85  Aligned_cols=143  Identities=13%  Similarity=0.174  Sum_probs=120.1

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +.+.+|+++++++ +||  ||+++++++.     ....++||||+ +|+|.+++......++++..+..++.|++.||.|
T Consensus        53 ~~~~~E~~~l~~l-~Hp--nIv~~~g~~~-----~~~~~iv~Ey~~~g~L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~  124 (272)
T d1qpca_          53 DAFLAEANLMKQL-QHQ--RLVRLYAVVT-----QEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAF  124 (272)
T ss_dssp             HHHHHHHHHHHHC-CCT--TBCCEEEEEC-----SSSCEEEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CEeEEEeeec-----cCCeEEEEEeCCCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence            4567899999999 565  9999999875     23568999999 9999997765544459999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc--CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH--DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~--~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      ||++ +|+||||||+|||++.++.  +||+|||+|+......  ......+++.|+|||.+....      ++.++||||
T Consensus       125 lH~~-~ivHrDiKp~NIll~~~~~--~Kl~DFGla~~~~~~~~~~~~~~~gt~~y~APE~~~~~~------~~~~sDvwS  195 (272)
T d1qpca_         125 IEER-NYIHRDLRAANILVSDTLS--CKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGT------FTIKSDVWS  195 (272)
T ss_dssp             HHHT-TEECSCCSGGGEEECTTSC--EEECCCTTCEECSSSCEECCTTCCCCTTTSCHHHHHHCE------ECHHHHHHH
T ss_pred             HHhC-CcccCccchhheeeecccc--eeeccccceEEccCCccccccccCCcccccChHHHhCCC------CCchhhhhh
Confidence            9996 9999999999999998877  9999999999875432  222457888999999998544      788999999


Q ss_pred             HHH
Q psy320          161 IKM  163 (202)
Q Consensus       161 l~~  163 (202)
                      +|+
T Consensus       196 ~Gv  198 (272)
T d1qpca_         196 FGI  198 (272)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            976

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-34  Score=221.36  Aligned_cols=141  Identities=21%  Similarity=0.204  Sum_probs=119.7

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ..+|+.++.+..+||  ||++++++|.    ++...|+||||+ +|+|.+++....  ++++..++.++.|++.||.|||
T Consensus        49 ~~~e~~~l~~~~~hp--~Iv~~~~~~~----~~~~~yivmEy~~~g~L~~~i~~~~--~~~e~~~~~~~~qi~~al~ylH  120 (320)
T d1xjda_          49 TMVEKRVLSLAWEHP--FLTHMFCTFQ----TKENLFFVMEYLNGGDLMYHIQSCH--KFDLSRATFYAAEIILGLQFLH  120 (320)
T ss_dssp             HHHHHHHHHHHTTCT--TBCCEEEEEE----CSSEEEEEEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCC--cEEEEEEEEc----cCCceeEEEeecCCCcHHHHhhccC--CCCHHHHHHHHHHHHHHHHHHH
Confidence            445666665443555  9999999999    677999999999 999999998764  4999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           85 TKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      ++ |++||||||+|||++.++.  +||+|||.|+...... ......||+.|+|||++..      ..|+.++|+||+|+
T Consensus       121 ~~-~iiHrDikp~NiL~~~~~~--~kl~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~DiwSlGv  191 (320)
T d1xjda_         121 SK-GIVYRDLKLDNILLDKDGH--IKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLG------QKYNHSVDWWSFGV  191 (320)
T ss_dssp             HT-TCBCCCCCGGGEEECTTSC--EEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTT------CCBCTHHHHHHHHH
T ss_pred             hC-CeeeccCcccceeecCCCc--eeccccchhhhcccccccccccCCCCCcCCHHHHcC------CCCCchhhhhhhhH
Confidence            96 9999999999999998877  9999999998765432 2234689999999999984      34888999999986

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.7e-34  Score=218.92  Aligned_cols=164  Identities=21%  Similarity=0.202  Sum_probs=134.1

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEec-CCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTG-INGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~-~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+.+++.++...||||++++++|.... ......+++|||+.+++..+......+.+++..++.++.|++.||.||
T Consensus        53 ~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yL  132 (305)
T d1blxa_          53 STIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFL  132 (305)
T ss_dssp             THHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSSEEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCCCCcceeeeeecccccccCceEEEEEEeccCCchhhhhhccCCCCCHHHHHHHHHHHHHHHHHH
Confidence            4568999999887555679999999997543 245689999999955555555555556799999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |++ ||+||||||+|||++.++.  +|++|||.++............||+.|+|||++..      ..|+.++||||+|+
T Consensus       133 H~~-~ivHrDiKp~NILi~~~~~--~kl~dfg~~~~~~~~~~~~~~~gT~~Y~APE~~~~------~~y~~~~DiwSlG~  203 (305)
T d1blxa_         133 HSH-RVVHRDLKPQNILVTSSGQ--IKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQ------SSYATPVDLWSVGC  203 (305)
T ss_dssp             HHT-TCCCCCCCGGGEEECTTCC--EEECSCCSCCCCCGGGGGCCCCCCCTTCCHHHHTT------CCCCTHHHHHHHHH
T ss_pred             HhC-CEEecCCCccEEEEcCCCC--eeecchhhhhhhcccccCCCcccChhhcCcchhcC------CCCChhehhhchHH
Confidence            996 9999999999999998877  99999999987765555556789999999999984      44889999999997


Q ss_pred             HHHHHHHHHHHHhcCCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~  183 (202)
                      .      +-.+..|.++|..
T Consensus       204 i------l~ell~g~~pf~~  217 (305)
T d1blxa_         204 I------FAEMFRRKPLFRG  217 (305)
T ss_dssp             H------HHHHHHSSCSCCC
T ss_pred             H------HHHHHHCCCCCCC
Confidence            3      3356668888754

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-34  Score=223.16  Aligned_cols=157  Identities=20%  Similarity=0.208  Sum_probs=125.7

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +.+.+|+++++++ +||  ||++++++|.    .+.+.|+||||+ ++++..+. .. .+.+++..++.++.|++.||.|
T Consensus        45 ~~~~~Ei~il~~l-~hp--nIv~~~~~~~----~~~~~~ivmE~~~~~~~~~~~-~~-~~~l~~~~~~~~~~qil~aL~~  115 (299)
T d1ua2a_          45 RTALREIKLLQEL-SHP--NIIGLLDAFG----HKSNISLVFDFMETDLEVIIK-DN-SLVLTPSHIKAYMLMTLQGLEY  115 (299)
T ss_dssp             THHHHHHHHHHHC-CCT--TBCCEEEEEC----CTTCCEEEEECCSEEHHHHHT-TC-CSSCCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CEeEEEeeec----cCCceeehhhhhcchHHhhhh-hc-ccCCCHHHHHHHHHHHHHHHHH
Confidence            3467899999999 555  9999999998    566899999999 55554443 32 3569999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC-CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD-QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~-~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      ||++ |++||||||+|||++.++.  +||+|||.|+....... .....+|+.|+|||++..     ...|+.++||||+
T Consensus       116 lH~~-~iiHrDiKp~NIli~~~~~--~KL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~~DiwSl  187 (299)
T d1ua2a_         116 LHQH-WILHRDLKPNNLLLDENGV--LKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFG-----ARMYGVGVDMWAV  187 (299)
T ss_dssp             HHHT-TCCCCCCCGGGEEECTTCC--EEECCCGGGSTTTSCCCCCCCSCCCCTTCCHHHHTT-----CSCCCHHHHHHHH
T ss_pred             hhcc-ceecccCCcceEEecCCCc--cccccCccccccCCCcccccceecChhhccHHHHcc-----CCCCChhhhhhhc
Confidence            9996 9999999999999998877  99999999987754332 234679999999999873     2346789999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCC
Q psy320          162 KMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      |+.      +..+..|.++|..
T Consensus       188 Gvi------l~el~~g~~pf~~  203 (299)
T d1ua2a_         188 GCI------LAELLLRVPFLPG  203 (299)
T ss_dssp             HHH------HHHHHHSSCSSCC
T ss_pred             chH------HHHHHhCcCCCCC
Confidence            873      2245557777753

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-34  Score=219.07  Aligned_cols=143  Identities=12%  Similarity=0.130  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+++++++ +||  ||+++++++.    +....++||||+ ++++.+++.... +.+++..+..++.|++.||.||
T Consensus        55 ~~~~E~~il~~l-~H~--nIv~~~g~~~----~~~~~~~v~e~~~~~~l~~~~~~~~-~~~~~~~~~~i~~~i~~gl~~l  126 (283)
T d1mqba_          55 DFLGEAGIMGQF-SHH--NIIRLEGVIS----KYKPMMIITEYMENGALDKFLREKD-GEFSVLQLVGMLRGIAAGMKYL  126 (283)
T ss_dssp             HHHHHHHHHHTC-CCT--TBCCEEEEEC----SSSSEEEEEECCTTEEHHHHHHHTT-TCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc-CCC--CEeeeeEEEe----cCCceEEEEEecccCcchhhhhccc-ccccHHHHHHHHHHHHHhhhhc
Confidence            456788888888 455  9999999998    566899999999 889988876654 5699999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC----CCCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD----QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~----~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      |+. +|+||||||+|||++.++.  +||+|||+|+.......    .....+|+.|+|||.+..      ..++.++|||
T Consensus       127 H~~-~iiHrDlKp~NILl~~~~~--~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~------~~~~~~sDI~  197 (283)
T d1mqba_         127 ANM-NYVHRDLAARNILVNSNLV--CKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISY------RKFTSASDVW  197 (283)
T ss_dssp             HHT-TCCCSCCCGGGEEECTTCC--EEECCCCC-----------------CCCGGGSCHHHHHS------CCCCHHHHHH
T ss_pred             ccc-ccccCccccceEEECCCCe--EEEcccchhhcccCCCccceEeccCCCCccccCHHHHcc------CCCCCccccc
Confidence            995 9999999999999998877  99999999987644221    113468899999999873      4488899999


Q ss_pred             hHHHH
Q psy320          160 SIKMY  164 (202)
Q Consensus       160 sl~~~  164 (202)
                      |+|+.
T Consensus       198 S~Gvi  202 (283)
T d1mqba_         198 SFGIV  202 (283)
T ss_dssp             HHHHH
T ss_pred             ccHHH
Confidence            99753

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=5.8e-34  Score=217.20  Aligned_cols=159  Identities=16%  Similarity=0.199  Sum_probs=124.6

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+++++.+ +||  ||+++++++......+...|+||||+ +++|.+++....  ++++..++.++.|++.||.||
T Consensus        53 ~~~~E~~~l~~~-~hp--niv~~~~~~~~~~~~~~~~~lvmE~~~g~~L~~~~~~~~--~l~~~~~~~i~~qi~~al~~l  127 (277)
T d1o6ya_          53 RFRREAQNAAAL-NHP--AIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEG--PMTPKRAIEVIADACQALNFS  127 (277)
T ss_dssp             HHHHHHHHHHTC-CCT--TBCCEEEEEEEECSSSEEEEEEEECCCEEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc-CCC--CCCcccceeeeccCCCceEEEEEECCCCCEehhhhcccC--CCCHHHHHHHHHHHHHHHHHH
Confidence            356788888777 455  99999999998765667899999999 999999987764  599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc----CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH----DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~----~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      |+. |++||||||+|||++.++.  .+++|||.+.......    ......||+.|+|||++..      ..+++++|||
T Consensus       128 H~~-~iiHrDiKP~NIll~~~~~--~~l~d~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~------~~~~~~~Diw  198 (277)
T d1o6ya_         128 HQN-GIIHRDVKPANIMISATNA--VKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARG------DSVDARSDVY  198 (277)
T ss_dssp             HHT-TEECCCCSGGGEEEETTSC--EEECCCTTCEECC----------------TTCCHHHHTT------CCCCHHHHHH
T ss_pred             HhC-CccCccccCcccccCcccc--ceeehhhhhhhhccccccccccccccCcccccCHHHHcC------CCCCcceecc
Confidence            996 9999999999999998887  9999999987654322    1224579999999999873      3478899999


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCCC
Q psy320          160 SIKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       160 sl~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      |+|+.      +..+..|.+||..
T Consensus       199 SlGvi------lyelltG~~Pf~~  216 (277)
T d1o6ya_         199 SLGCV------LYEVLTGEPPFTG  216 (277)
T ss_dssp             HHHHH------HHHHHHSSCSCCC
T ss_pred             cchHH------HHHHHhCCCCCCC
Confidence            99873      3355557777753

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.7e-34  Score=218.62  Aligned_cols=159  Identities=23%  Similarity=0.297  Sum_probs=130.4

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ....+|+++++++ +||  ||++++++|.    ++.+.|+||||+++++.+++.....+++++..++.++.|++.||.||
T Consensus        46 ~~~~~Ei~il~~l-~Hp--~Iv~~~~~~~----~~~~~~iv~e~~~~~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yL  118 (298)
T d1gz8a_          46 STAIREISLLKEL-NHP--NIVKLLDVIH----TENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC  118 (298)
T ss_dssp             HHHHHHHHHHTTC-CCT--TBCCEEEEEE----ETTEEEEEEECCSEEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--cEEEeccccc----cccceeEEEeecCCchhhhhhhhcccCCCHHHHHHHHHHHHHHHHHh
Confidence            4566789988888 555  9999999999    56699999999977777777666556799999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |++ ||+||||||+|||++.++.  +|++|||.|+...... ......+++.|+|||.+....     .++.++|+||+|
T Consensus       119 H~~-~IiHrDiKpeNIl~~~~~~--~kl~DFG~a~~~~~~~~~~~~~~gt~~y~apE~~~~~~-----~~~~~~DiwSlG  190 (298)
T d1gz8a_         119 HSH-RVLHRDLKPQNLLINTEGA--IKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCK-----YYSTAVDIWSLG  190 (298)
T ss_dssp             HHT-TCCCSCCCGGGEEECTTSC--EEECSTTHHHHHCCCSBCTTCCBCCCTTCCHHHHTTCS-----SCCTHHHHHHHH
T ss_pred             hcC-CEEccccCchheeecccCc--ceeccCCcceeccCCcccceeecccceeeehhhhcccc-----CCCccccccccc
Confidence            996 9999999999999998876  9999999998765432 233468999999999987432     246799999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +.      +-.+..|..+|..
T Consensus       191 vi------ly~m~~G~~Pf~~  205 (298)
T d1gz8a_         191 CI------FAEMVTRRALFPG  205 (298)
T ss_dssp             HH------HHHHHHSSCSCCC
T ss_pred             hh------hhHHhhCCCCCCC
Confidence            73      3366668888753

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-33  Score=213.65  Aligned_cols=156  Identities=16%  Similarity=0.177  Sum_probs=125.6

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc--cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM--AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~--~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ..+|+.+++++ +++||||++++++|.    +....|+||||+  ++++.+++.+..  .+++..++.++.|++.||.||
T Consensus        54 ~~~E~~il~~l-~~~h~nIv~~~~~~~----~~~~~~lv~e~~~~~~~l~~~~~~~~--~l~e~~~~~~~~qi~~al~~l  126 (273)
T d1xwsa_          54 VPMEVVLLKKV-SSGFSGVIRLLDWFE----RPDSFVLILERPEPVQDLFDFITERG--ALQEELARSFFWQVLEAVRHC  126 (273)
T ss_dssp             EEHHHHHHHHH-CSSSCSBCCEEEEEE----CSSEEEEEEECCSSEEEHHHHHHHHC--SCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh-ccCCCCccEEEEEEe----eCCeEEEEEEeccCcchHHHHHhccC--CCCHHHHHHHHHHHHHHHHHH
Confidence            35799999999 566779999999999    677999999999  478888887763  599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~  163 (202)
                      |++ ||+||||||+|||++.+.. .+||+|||+|+..... ......||+.|+|||++....     .++.++|+||+|+
T Consensus       127 H~~-~iiHrDiKp~NIll~~~~~-~vkl~DFG~a~~~~~~-~~~~~~GT~~y~aPE~~~~~~-----~~~~~~DiwSlGv  198 (273)
T d1xwsa_         127 HNC-GVLHRDIKDENILIDLNRG-ELKLIDFGSGALLKDT-VYTDFDGTRVYSPPEWIRYHR-----YHGRSAAVWSLGI  198 (273)
T ss_dssp             HHT-TEECSCCSGGGEEEETTTT-EEEECCCTTCEECCSS-CBCCCCSCGGGSCHHHHHHSC-----BCHHHHHHHHHHH
T ss_pred             HHC-CCccccCcccceEEecCCC-eEEECccccceecccc-cccccccCCCcCCHHHHcCCC-----CCCccccccccee
Confidence            996 9999999999999986532 4999999999875422 233467999999999998443     1245799999986


Q ss_pred             HHHHHHHHHHHHhcCCCCC
Q psy320          164 YTTFCEILEQCRLNHQDFR  182 (202)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~  182 (202)
                      ..+      .+..|..||.
T Consensus       199 ily------ell~g~~Pf~  211 (273)
T d1xwsa_         199 LLY------DMVCGDIPFE  211 (273)
T ss_dssp             HHH------HHHHSSCSCC
T ss_pred             eeh------hHhhCCCCCC
Confidence            332      4444666654

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-33  Score=213.41  Aligned_cols=144  Identities=15%  Similarity=0.198  Sum_probs=121.8

Q ss_pred             chHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Q psy320            3 TNYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLN   81 (202)
Q Consensus         3 ~~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~   81 (202)
                      ...+.+|+++++++ +||  ||++++++|.    +...+++||||+ +|+|.+++.... +.+++..++.++.|++.||.
T Consensus        43 ~~~~~~Ev~~~~~l-~Hp--nIv~~~g~~~----~~~~~~iv~Ey~~~g~l~~~~~~~~-~~~~~~~~~~i~~qi~~gl~  114 (258)
T d1k2pa_          43 EDEFIEEAKVMMNL-SHE--KLVQLYGVCT----KQRPIFIITEYMANGCLLNYLREMR-HRFQTQQLLEMCKDVCEAME  114 (258)
T ss_dssp             HHHHHHHHHHHHTC-CCT--TBCCEEEEEC----CSSSEEEEEECCTTEEHHHHHHSGG-GCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc-CCC--ceeeEEEEEe----eCCceEEEEEccCCCcHHHhhhccc-cCCcHHHHHHHHHHHHHHHH
Confidence            35567899999988 555  9999999998    566899999999 899999876543 45899999999999999999


Q ss_pred             HHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC--CCCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           82 HLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD--QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        82 ~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~--~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      |||++ ||+||||||+||+++.++.  +||+|||+|+.......  .....+++.|+|||.+....      ++.++|||
T Consensus       115 ~LH~~-~iiH~dlk~~Nill~~~~~--~kl~DfG~a~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~------~~~ksDiw  185 (258)
T d1k2pa_         115 YLESK-QFLHRDLAARNCLVNDQGV--VKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSK------FSSKSDIW  185 (258)
T ss_dssp             HHHHT-TBCCSCCSGGGEEECTTCC--EEECCCSSCCBCSSSSCCCCCCSCCCGGGCCHHHHHHCC------CCHHHHHH
T ss_pred             HHhhc-CcccccccceeEEEcCCCc--EEECcchhheeccCCCceeecccCCCCCcCCcHHhcCCC------CCcceeec
Confidence            99996 9999999999999998776  99999999987654322  22457889999999998544      78899999


Q ss_pred             hHHH
Q psy320          160 SIKM  163 (202)
Q Consensus       160 sl~~  163 (202)
                      |+|+
T Consensus       186 S~G~  189 (258)
T d1k2pa_         186 AFGV  189 (258)
T ss_dssp             HHHH
T ss_pred             ccch
Confidence            9976

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.7e-34  Score=216.40  Aligned_cols=142  Identities=15%  Similarity=0.171  Sum_probs=108.9

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +.+.+|+++++++ +||  ||++++++|.     ....|+||||+ +++|.+++.... +.+++..+..++.|++.||.|
T Consensus        53 ~~~~~E~~~l~~l-~Hp--nIv~l~~~~~-----~~~~~iv~E~~~~g~l~~~~~~~~-~~l~~~~~~~~~~qi~~gl~y  123 (273)
T d1mp8a_          53 EKFLQEALTMRQF-DHP--HIVKLIGVIT-----ENPVWIIMELCTLGELRSFLQVRK-YSLDLASLILYAYQLSTALAY  123 (273)
T ss_dssp             HHHHHHHHHHHTC-CCT--TBCCEEEEEC-----SSSCEEEEECCTTEEHHHHHHHTT-TTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CEeeEEEEEe-----cCeEEEEEEeccCCcHHhhhhccC-CCCCHHHHHHHHHHHHHHhhh
Confidence            3456788888888 455  9999999986     34689999999 899999876544 469999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC--CCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ--QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~--~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      ||+. +++||||||+||+++.++.  +||+|||+|+........  ....+|+.|+|||.+....      ++.++|+||
T Consensus       124 lH~~-~iiHrDlKp~NIll~~~~~--~Kl~DfG~a~~~~~~~~~~~~~~~gt~~y~apE~l~~~~------~~~~~DiwS  194 (273)
T d1mp8a_         124 LESK-RFVHRDIAARNVLVSSNDC--VKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRR------FTSASDVWM  194 (273)
T ss_dssp             HHHT-TCCCSCCSGGGEEEEETTE--EEECC-------------------CCGGGCCHHHHHHCC------CSHHHHHHH
T ss_pred             hccc-CeeccccchhheeecCCCc--EEEccchhheeccCCcceeccceecCcccchhhHhccCC------CCCcccccc
Confidence            9996 9999999999999999877  999999999876543222  2346789999999998443      788999999


Q ss_pred             HHH
Q psy320          161 IKM  163 (202)
Q Consensus       161 l~~  163 (202)
                      +|+
T Consensus       195 lGv  197 (273)
T d1mp8a_         195 FGV  197 (273)
T ss_dssp             HHH
T ss_pred             chH
Confidence            986

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.6e-34  Score=217.45  Aligned_cols=144  Identities=17%  Similarity=0.168  Sum_probs=115.4

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +.+.+|+.+++++ +||  ||+++++++.    + ...++||||+ +|+|..++.....+.+++..+..++.|++.||.|
T Consensus        57 ~~~~~E~~~l~~l-~h~--nIv~~~g~~~----~-~~~~lv~Ey~~~g~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~  128 (285)
T d1fmka3          57 EAFLQEAQVMKKL-RHE--KLVQLYAVVS----E-EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAY  128 (285)
T ss_dssp             HHHHHHHHHHHHC-CCT--TBCCEEEEEC----S-SSCEEEECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc-ccC--CEeEEEEEEe----c-CCeEEEEEecCCCchhhhhhhcccccchHHHHHHHHHHHHHHHHH
Confidence            4577899999998 555  9999999986    2 3478999999 8999998876554569999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc--CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhh
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH--DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTS  160 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~--~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diws  160 (202)
                      ||+. ||+||||||+|||++.++.  +||+|||+|+......  ......+++.|+|||.+....      +++++||||
T Consensus       129 LH~~-~ivH~DlKp~NIll~~~~~--~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~------~~~ksDI~S  199 (285)
T d1fmka3         129 VERM-NYVHRDLRAANILVGENLV--CKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGR------FTIKSDVWS  199 (285)
T ss_dssp             HHHT-TCCCSCCSGGGEEECGGGC--EEECCCCTTC--------------CCGGGSCHHHHHHCC------CCHHHHHHH
T ss_pred             Hhhh-heecccccceEEEECCCCc--EEEcccchhhhccCCCceeeccccccccccChHHHhCCC------CCcHHhhhc
Confidence            9996 9999999999999988776  9999999998764322  222357899999999998444      788999999


Q ss_pred             HHHH
Q psy320          161 IKMY  164 (202)
Q Consensus       161 l~~~  164 (202)
                      +|+.
T Consensus       200 ~Gii  203 (285)
T d1fmka3         200 FGIL  203 (285)
T ss_dssp             HHHH
T ss_pred             chHH
Confidence            9653

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-33  Score=218.14  Aligned_cols=145  Identities=12%  Similarity=0.161  Sum_probs=122.0

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHc--------------CCCCCCHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQ--------------KFQPAPLVV   68 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~--------------~~~~~~~~~   68 (202)
                      +.+.+|+++|+++.+||  ||++++++|.    .+...++||||+ +|+|.+++.+.              ....+++..
T Consensus        55 ~~~~~E~~~l~~l~~Hp--nIv~~~~~~~----~~~~~~iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~  128 (309)
T d1fvra_          55 RDFAGELEVLCKLGHHP--NIINLLGACE----HRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQ  128 (309)
T ss_dssp             CHHHHHHHHHTTCCCCT--TBCCEEEEEE----ETTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHH
T ss_pred             HHHHHHHHHHHhccCCC--CEeeEEEEEe----cCCeeEEEEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHH
Confidence            35678999888885555  9999999999    466899999999 99999999754              135699999


Q ss_pred             HHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhcc
Q psy320           69 AKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQ  148 (202)
Q Consensus        69 ~~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~  148 (202)
                      +..++.|++.||.|+|+. +++||||||+|||++.++.  +||+|||+|+............+|..|+|||.+....   
T Consensus       129 ~~~~~~qia~gl~~lH~~-~iiHrDlkp~NIL~~~~~~--~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~l~~~~---  202 (309)
T d1fvra_         129 LLHFAADVARGMDYLSQK-QFIHRDLAARNILVGENYV--AKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSV---  202 (309)
T ss_dssp             HHHHHHHHHHHHHHHHHT-TEECSCCSGGGEEECGGGC--EEECCTTCEESSCEECCC----CCTTTCCHHHHHHCE---
T ss_pred             HHHHHHHHHHHHHhhhcC-CccccccccceEEEcCCCc--eEEccccccccccccccccceecCCcccchHHhccCC---
Confidence            999999999999999996 9999999999999998776  9999999998776555555567899999999998544   


Q ss_pred             CCCCCCCcchhhHHH
Q psy320          149 DFRLDPRVDPTSIKM  163 (202)
Q Consensus       149 ~~~~~~~~Diwsl~~  163 (202)
                         ++.++|+||+|+
T Consensus       203 ---~~~~sDvwSfGv  214 (309)
T d1fvra_         203 ---YTTNSDVWSYGV  214 (309)
T ss_dssp             ---ECHHHHHHHHHH
T ss_pred             ---CCccceeehhHH
Confidence               788999999975

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-33  Score=216.54  Aligned_cols=146  Identities=16%  Similarity=0.168  Sum_probs=112.7

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC--------------CCCCCHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK--------------FQPAPLVVA   69 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~--------------~~~~~~~~~   69 (202)
                      .+.+|++.+.++..|+  ||+.+++++..   .+...++||||+ +|+|.+++....              ...+++..+
T Consensus        62 ~~~~e~~~l~~~~~h~--~iv~~~~~~~~---~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~  136 (299)
T d1ywna1          62 ALMSELKILIHIGHHL--NVVNLLGACTK---PGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHL  136 (299)
T ss_dssp             HHHHHHHHHHHHCCCT--TBCCEEEEECS---TTSCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHH
T ss_pred             HHHHHHHHHHhhcCCC--eEEEeeeeecc---CCCeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHH
Confidence            3456677777774444  99999998763   345789999999 999999997542              234889999


Q ss_pred             HHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC---CCCCCCccchhhHHHHhhhh
Q psy320           70 KIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ---QSSSKTKSKIFCEILEQCRL  146 (202)
Q Consensus        70 ~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~---~~~~~~~~~~ape~~~~~~~  146 (202)
                      ..++.|++.||.|||++ ||+||||||+|||++.++.  +||+|||+|+........   ....||+.|+|||.+...  
T Consensus       137 ~~~~~qi~~gl~ylH~~-~ivHrDlKp~NILl~~~~~--~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~--  211 (299)
T d1ywna1         137 ICYSFQVAKGMEFLASR-KCIHRDLAARNILLSEKNV--VKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDR--  211 (299)
T ss_dssp             HHHHHHHHHHHHHHHHT-TCCCSCCCGGGEEECGGGC--EEECC------CCSCTTSCCTTSCCCGGGGCCHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHhC-CCcCCcCCccceeECCCCc--EEEccCcchhhccccccccccCceeeCccccchhHhhcC--
Confidence            99999999999999996 9999999999999998776  999999999876443222   235789999999999844  


Q ss_pred             ccCCCCCCCcchhhHHHH
Q psy320          147 NQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus       147 ~~~~~~~~~~Diwsl~~~  164 (202)
                          .++.++||||+|+.
T Consensus       212 ----~~~~~sDiwS~Gvi  225 (299)
T d1ywna1         212 ----VYTIQSDVWSFGVL  225 (299)
T ss_dssp             ----CCCHHHHHHHHHHH
T ss_pred             ----CCCcccceeehHHH
Confidence                37889999999863

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-33  Score=216.25  Aligned_cols=143  Identities=16%  Similarity=0.184  Sum_probs=116.9

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +.+.+|+++++++ +||  ||++++++|.    ++ ..+++++++ +++|.+.+.... ..+++..+..++.|++.||.|
T Consensus        56 ~~~~~E~~~l~~l-~Hp--nIv~l~g~~~----~~-~~~~v~e~~~~~~l~~~~~~~~-~~~~~~~~~~i~~qi~~gl~y  126 (317)
T d1xkka_          56 KEILDEAYVMASV-DNP--HVCRLLGICL----TS-TVQLITQLMPFGCLLDYVREHK-DNIGSQYLLNWCVQIAKGMNY  126 (317)
T ss_dssp             HHHHHHHHHHHHC-CCT--TBCCEEEEEE----SS-SEEEEEECCTTCBHHHHHHHTS-SSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CEeeEEEEEe----cC-CeeEEEEeccCCcccccccccc-cCCCHHHHHHHHHHHHHHHHH
Confidence            3567899999999 555  9999999998    33 456777777 899998887654 569999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC---CCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ---SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~---~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      ||++ ||+||||||+|||++.++.  +||+|||+|+.........   ...+|+.|+|||.+....      |+.++|+|
T Consensus       127 LH~~-~iiHrDlKp~NIll~~~~~--~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~------~~~~sDvw  197 (317)
T d1xkka_         127 LEDR-RLVHRDLAARNVLVKTPQH--VKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRI------YTHQSDVW  197 (317)
T ss_dssp             HHHT-TCCCSCCCGGGEEEEETTE--EEECCCSHHHHTTTTCC--------CCTTTSCHHHHHHCC------CCHHHHHH
T ss_pred             HHHc-CcccCcchhhcceeCCCCC--eEeeccccceecccccccccccccccCccccChHHHhcCC------CChhhhhh
Confidence            9996 9999999999999998876  9999999998765432221   246789999999998443      88899999


Q ss_pred             hHHHH
Q psy320          160 SIKMY  164 (202)
Q Consensus       160 sl~~~  164 (202)
                      |+|+.
T Consensus       198 S~Gvi  202 (317)
T d1xkka_         198 SYGVT  202 (317)
T ss_dssp             HHHHH
T ss_pred             hHHHH
Confidence            99863

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=5.2e-32  Score=212.69  Aligned_cols=162  Identities=16%  Similarity=0.226  Sum_probs=127.3

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecC--CceEEEEEEccccccHHHHHHH--cCCCCCCHHHHHHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGI--NGTHVCTVTEIMAECLCNYMIR--QKFQPAPLVVAKIIVNQILEGLN   81 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~--~~~~~~lv~e~~~~sL~~~~~~--~~~~~~~~~~~~~~~~qi~~~l~   81 (202)
                      ..+|+++|+++ +||  ||++++++|...+.  +..++|+||||+++++.+.+..  .....+++..++.++.|++.||.
T Consensus        60 ~~~Ei~il~~l-~h~--niv~~~~~~~~~~~~~~~~~~~lv~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~  136 (350)
T d1q5ka_          60 KNRELQIMRKL-DHC--NIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLA  136 (350)
T ss_dssp             CCHHHHHHHHC-CCT--TBCCEEEEEEEC--CCSCCEEEEEEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc-CCC--CCCcEEEEEEecCccCCceEEEEEEeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHH
Confidence            45799999998 555  99999999976432  3568899999996655544432  23456999999999999999999


Q ss_pred             HHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           82 HLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        82 ~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      |||+. ||+||||||+|||++.++. .+||+|||+++............+++.|+|||.+..     ...|+.++||||+
T Consensus       137 yLH~~-~IiHrDiKp~NILl~~~~~-~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~~DIwSl  209 (350)
T d1q5ka_         137 YIHSF-GICHRDIKPQNLLLDPDTA-VLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFG-----ATDYTSSIDVWSA  209 (350)
T ss_dssp             HHHTT-TEECCCCCGGGEEECTTTC-CEEECCCTTCEECCTTSCCCSCCSCTTSCCHHHHTT-----CSSCCTHHHHHHH
T ss_pred             HHHhc-CCcccCCCcceEEEecCCC-ceeEecccchhhccCCcccccccccccccChHHhhc-----ccCCCcceeeccc
Confidence            99995 9999999999999987752 399999999988765544556789999999999873     2347889999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCC
Q psy320          162 KMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      |+.      +..+..|.++|..
T Consensus       210 G~i------l~el~~g~~pf~~  225 (350)
T d1q5ka_         210 GCV------LAELLLGQPIFPG  225 (350)
T ss_dssp             HHH------HHHHHHTSCSSCC
T ss_pred             ceE------EEehhhCCCCCCC
Confidence            973      3355558777754

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.9e-32  Score=210.86  Aligned_cols=144  Identities=15%  Similarity=0.152  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC--------------CCCCCHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK--------------FQPAPLVVA   69 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~--------------~~~~~~~~~   69 (202)
                      .+.+|+..+.++.+||  ||++++++|.    +....++||||+ +|+|.+++....              .+.+++..+
T Consensus        64 ~~~~e~~~l~~~~~Hp--nIv~~~~~~~----~~~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~  137 (299)
T d1fgka_          64 DLISEMEMMKMIGKHK--NIINLLGACT----QDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDL  137 (299)
T ss_dssp             HHHHHHHHHHHHCCCT--TBCCEEEEEC----SSSSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHH
T ss_pred             HHHHHHHHHHHhcCCC--eEEecccccc----cCCeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHH
Confidence            3456777777775566  9999999998    566899999999 999999997543              245899999


Q ss_pred             HHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC---CCCCCCccchhhHHHHhhhh
Q psy320           70 KIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ---QSSSKTKSKIFCEILEQCRL  146 (202)
Q Consensus        70 ~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~---~~~~~~~~~~ape~~~~~~~  146 (202)
                      +.++.|++.||.|||+. +++||||||+|||++.++.  +||+|||.++........   ....+++.|+|||.+...  
T Consensus       138 ~~~~~qi~~al~ylH~~-~ivHrDiKp~NiLl~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~--  212 (299)
T d1fgka_         138 VSCAYQVARGMEYLASK-KCIHRDLAARNVLVTEDNV--MKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDR--  212 (299)
T ss_dssp             HHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEECTTCC--EEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHHHHC--
T ss_pred             HHHHHHHHHHHHHhhhC-CEEeeeecccceeecCCCC--eEeccchhhccccccccccccccCCCChhhhhhhHhcCC--
Confidence            99999999999999996 9999999999999998877  999999999987654322   245788899999999843  


Q ss_pred             ccCCCCCCCcchhhHHH
Q psy320          147 NQDFRLDPRVDPTSIKM  163 (202)
Q Consensus       147 ~~~~~~~~~~Diwsl~~  163 (202)
                          .|++++||||+|+
T Consensus       213 ----~y~~k~DiwS~Gv  225 (299)
T d1fgka_         213 ----IYTHQSDVWSFGV  225 (299)
T ss_dssp             ----CCCHHHHHHHHHH
T ss_pred             ----CCCchhhhHHhHH
Confidence                4889999999976

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.8e-33  Score=212.64  Aligned_cols=143  Identities=15%  Similarity=0.179  Sum_probs=113.0

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      +.+.+|+++++++ +||  ||++++++|..   +...+|+||||+ +|+|.+++.......+++..++.++.|++.||.|
T Consensus        45 ~~~~~E~~~l~~l-~Hp--nIv~~~g~~~~---~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~al~y  118 (262)
T d1byga_          45 QAFLAEASVMTQL-RHS--NLVQLLGVIVE---EKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEY  118 (262)
T ss_dssp             HHHHHTHHHHTTC-CCT--TBCCEEEEECC---C--CCEEEECCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CEeeEEEEEEe---cCCcEEEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHhhccc
Confidence            4567899988888 555  99999999863   234689999999 9999999976543458999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      ||++ +++||||||+|||++.++.  +|++|||.++....  ......++..|+|||.+....      +++++||||+|
T Consensus       119 lH~~-~ivH~dlkp~Nil~~~~~~--~kl~dfg~s~~~~~--~~~~~~~~~~y~aPE~l~~~~------~t~~sDIwSfG  187 (262)
T d1byga_         119 LEGN-NFVHRDLAARNVLVSEDNV--AKVSDFGLTKEASS--TQDTGKLPVKWTAPEALREKK------FSTKSDVWSFG  187 (262)
T ss_dssp             HHHT-TCCCSCCSGGGEEECTTSC--EEECCCCC--------------CCTTTSCHHHHHHCC------CCHHHHHHHHH
T ss_pred             cccC-ceeccccchHhheecCCCC--EeecccccceecCC--CCccccccccCCChHHHhCCC------CChHHHHHhHH
Confidence            9996 9999999999999998887  99999999987542  223456788999999998443      78899999997


Q ss_pred             H
Q psy320          163 M  163 (202)
Q Consensus       163 ~  163 (202)
                      +
T Consensus       188 ~  188 (262)
T d1byga_         188 I  188 (262)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=8.5e-33  Score=210.19  Aligned_cols=142  Identities=13%  Similarity=0.151  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+++++++ +||  ||++++++|.    ++ ..++||||+ ++++.+++.... +.+++..+..++.|++.||.||
T Consensus        57 ~~~~Ei~~l~~l-~H~--nIv~~~g~~~----~~-~~~lv~e~~~~~~l~~~~~~~~-~~l~~~~~~~~~~qi~~gl~yl  127 (273)
T d1u46a_          57 DFIREVNAMHSL-DHR--NLIRLYGVVL----TP-PMKMVTELAPLGSLLDRLRKHQ-GHFLLGTLSRYAVQVAEGMGYL  127 (273)
T ss_dssp             HHHHHHHHHHHC-CCT--TBCCEEEEEC----SS-SCEEEEECCTTCBHHHHHHHHG-GGSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCC--CEEEEEEEEe----ec-chheeeeeecCcchhhhhhccc-CCCCHHHHHHHHHHHHHHHHHh
Confidence            457889999999 555  9999999997    33 568999999 899998877654 4599999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC----CCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ----QSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~----~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      |++ ||+||||||+||+++.++.  +||+|||+++........    ....++..|+|||.+....      ++.++|+|
T Consensus       128 H~~-~iiHrDikp~NIll~~~~~--vkl~DfGl~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~------~~~~~Di~  198 (273)
T d1u46a_         128 ESK-RFIHRDLAARNLLLATRDL--VKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRT------FSHASDTW  198 (273)
T ss_dssp             HHT-TEECSCCCGGGEEEEETTE--EEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHHHCE------EEHHHHHH
T ss_pred             hhC-CEeeeeecHHHhccccccc--eeeccchhhhhcccCCCcceecCccccCcccCCHHHHhCCC------CCcchhhh
Confidence            996 9999999999999999876  999999999986443221    1335778899999998544      77899999


Q ss_pred             hHHHH
Q psy320          160 SIKMY  164 (202)
Q Consensus       160 sl~~~  164 (202)
                      |+|+.
T Consensus       199 S~Gvi  203 (273)
T d1u46a_         199 MFGVT  203 (273)
T ss_dssp             HHHHH
T ss_pred             hhHHH
Confidence            99863

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.3e-32  Score=210.62  Aligned_cols=144  Identities=17%  Similarity=0.186  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC----------------CCCCCHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK----------------FQPAPLV   67 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~----------------~~~~~~~   67 (202)
                      .+.+|+.+++++.+||  ||+++++++.    ++...++||||+ +++|.+++.+..                ...+++.
T Consensus        72 ~~~~E~~~~~~l~~Hp--nIv~~~g~~~----~~~~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  145 (311)
T d1t46a_          72 ALMSELKVLSYLGNHM--NIVNLLGACT----IGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLE  145 (311)
T ss_dssp             HHHHHHHHHHHHCCCT--TBCCEEEEEC----SSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHH
T ss_pred             HHHHHHHHHHhccCCC--CEEEEEEEEe----eCCEEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHH
Confidence            4567899999886566  9999999998    567899999999 999999997643                2258899


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC---CCCCCCCccchhhHHHHhh
Q psy320           68 VAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD---QQSSSKTKSKIFCEILEQC  144 (202)
Q Consensus        68 ~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~---~~~~~~~~~~~ape~~~~~  144 (202)
                      .+..++.||+.||.|||++ +++||||||+||+++.++.  ++++|||.++.......   .....+++.|+|||.+...
T Consensus       146 ~~~~~~~qi~~gl~~LH~~-~ivHrDLKp~NIl~~~~~~--~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  222 (311)
T d1t46a_         146 DLLSFSYQVAKGMAFLASK-NCIHRDLAARNILLTHGRI--TKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNC  222 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEEETTTE--EEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHhC-CeeecccccccccccccCc--ccccccchheeccCCCcceEeeecccChHHcCHHHhcCC
Confidence            9999999999999999996 9999999999999998876  99999999997654222   1245789999999999844


Q ss_pred             hhccCCCCCCCcchhhHHH
Q psy320          145 RLNQDFRLDPRVDPTSIKM  163 (202)
Q Consensus       145 ~~~~~~~~~~~~Diwsl~~  163 (202)
                      .      ++.++||||+|+
T Consensus       223 ~------~~~~~DIwS~G~  235 (311)
T d1t46a_         223 V------YTFESDVWSYGI  235 (311)
T ss_dssp             C------CCHHHHHHHHHH
T ss_pred             C------CCCcccccchHH
Confidence            3      788999999975

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=2.3e-32  Score=210.60  Aligned_cols=145  Identities=14%  Similarity=0.162  Sum_probs=120.0

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC----------------------
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK----------------------   60 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~----------------------   60 (202)
                      ..+.+|+++++++ +||  ||+++++++.    .+...++||||+ +++|.+++....                      
T Consensus        61 ~~~~~E~~il~~l-~h~--niv~~~~~~~----~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (301)
T d1lufa_          61 ADFQREAALMAEF-DNP--NIVKLLGVCA----VGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPG  133 (301)
T ss_dssp             HHHHHHHHHHHTC-CCT--TBCCEEEEEC----SSSSCEEEEECCTTCBHHHHHHHTCC---------------------
T ss_pred             HHHHHHHHHHHhc-CCC--Ccccceeeec----cCCceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccC
Confidence            3467889988888 555  9999999998    567899999999 999999986532                      


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC---CCCCCCccchh
Q psy320           61 FQPAPLVVAKIIVNQILEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ---QSSSKTKSKIF  137 (202)
Q Consensus        61 ~~~~~~~~~~~~~~qi~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~---~~~~~~~~~~a  137 (202)
                      ...++...+..++.|++.||.|||+. +++||||||+|||++.++.  +||+|||+|+........   ....+++.|+|
T Consensus       134 ~~~l~~~~~~~i~~qi~~gl~ylH~~-~ivHrDlKp~NILld~~~~--~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~a  210 (301)
T d1lufa_         134 PPPLSCAEQLCIARQVAAGMAYLSER-KFVHRDLATRNCLVGENMV--VKIADFGLSRNIYSADYYKADGNDAIPIRWMP  210 (301)
T ss_dssp             -CCCCHHHHHHHHHHHHHHHHHHHHT-TCCCSCCSGGGEEECGGGC--EEECCCSCHHHHTGGGCBC----CCBCGGGCC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhhcccC-CeEeeEEcccceEECCCCc--EEEccchhheeccCCccccccCCCCcCcCcCC
Confidence            12488899999999999999999996 9999999999999998776  999999999876443222   23568889999


Q ss_pred             hHHHHhhhhccCCCCCCCcchhhHHHH
Q psy320          138 CEILEQCRLNQDFRLDPRVDPTSIKMY  164 (202)
Q Consensus       138 pe~~~~~~~~~~~~~~~~~Diwsl~~~  164 (202)
                      ||.+....      |+.++|+||+|+.
T Consensus       211 PE~~~~~~------~t~ksDVwS~Gvv  231 (301)
T d1lufa_         211 PESIFYNR------YTTESDVWAYGVV  231 (301)
T ss_dssp             HHHHHHCC------CCHHHHHHHHHHH
T ss_pred             HHHHccCC------CChhhhhccchhh
Confidence            99998443      8889999999753

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.8e-32  Score=208.08  Aligned_cols=145  Identities=13%  Similarity=0.130  Sum_probs=119.8

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ..+.+|+++++++ +||  ||+++++++..   .+...++||||+ +++|.+++.... ..++...+..++.|++.||.|
T Consensus        73 ~~~~~E~~~l~~l-~Hp--nIv~~~g~~~~---~~~~~~lv~E~~~~g~l~~~~~~~~-~~~~~~~~~~i~~qia~gL~~  145 (311)
T d1r0pa_          73 SQFLTEGIIMKDF-SHP--NVLSLLGICLR---SEGSPLVVLPYMKHGDLRNFIRNET-HNPTVKDLIGFGLQVAKGMKF  145 (311)
T ss_dssp             HHHHHHHHHHHTC-CCT--TBCCCCEEEEE---TTTEEEEEEECCTTCBHHHHHHCTT-CCCBHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--CEeEEeEEEEe---cCCceEEEEEEeecCchhhhhcccc-ccchHHHHHHHHHHHHHhhhh
Confidence            3467899999888 455  99999999874   345899999999 999999886544 457888899999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC-----CCCCCccchhhHHHHhhhhccCCCCCCCcc
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ-----SSSKTKSKIFCEILEQCRLNQDFRLDPRVD  157 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~-----~~~~~~~~~ape~~~~~~~~~~~~~~~~~D  157 (202)
                      +|+. +|+||||||+|||++.++.  +||+|||+++.........     ...+++.|+|||.+...      .++.++|
T Consensus       146 lH~~-~iiHrDLK~~NILl~~~~~--~kL~DFG~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~ksD  216 (311)
T d1r0pa_         146 LASK-KFVHRDLAARNCMLDEKFT--VKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQ------KFTTKSD  216 (311)
T ss_dssp             HHHT-TCCCSCCSGGGEEECTTCC--EEECSSGGGCCTTTTTCCCTTCTTCSSCCGGGSCHHHHHHC------CCCHHHH
T ss_pred             hccc-CcccCCccHHhEeECCCCC--EEEecccchhhccccccccceecccccccccccChHHHhcC------CCCChhH
Confidence            9996 9999999999999988776  9999999998765432211     24688899999999843      3788999


Q ss_pred             hhhHHHH
Q psy320          158 PTSIKMY  164 (202)
Q Consensus       158 iwsl~~~  164 (202)
                      |||+|+.
T Consensus       217 I~SfGiv  223 (311)
T d1r0pa_         217 VWSFGVL  223 (311)
T ss_dssp             HHHHHHH
T ss_pred             hhhhHHH
Confidence            9999763

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.1e-32  Score=210.00  Aligned_cols=152  Identities=15%  Similarity=0.165  Sum_probs=118.4

Q ss_pred             CCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhh-------CCccc
Q psy320           20 PSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHTK-------HNLVH   91 (202)
Q Consensus        20 ~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~-------~~ivH   91 (202)
                      .||||+++++++..++......|+||||+ +++|.+++++.   ++++.....++.|++.||.|+|+.       .||+|
T Consensus        55 ~HpnIv~~~~~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~---~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvH  131 (303)
T d1vjya_          55 RHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAH  131 (303)
T ss_dssp             CCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEEC
T ss_pred             CCCcCcceEEEEEeCCCcceEEEEEEecccCCCHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeec
Confidence            36699999999997765667899999999 99999999875   399999999999999999999961       28999


Q ss_pred             cCCCCCceeeecCCcceeEEeeccccccccccc-----CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHHHHHH
Q psy320           92 TSIKPESIFFKADHVYIMTLINIQQATTHQECH-----DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIKMYTT  166 (202)
Q Consensus        92 ~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-----~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~~~~~  166 (202)
                      |||||+|||++.++.  +||+|||+++......     ......||+.|+|||++..........++.++|+||+|+..+
T Consensus       132 rDlKp~NILl~~~~~--~Kl~DFGl~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~  209 (303)
T d1vjya_         132 RDLKSKNILVKKNGT--CCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFW  209 (303)
T ss_dssp             SCCCGGGEEECTTSC--EEECCCTTCEEEETTTTEECC----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHH
T ss_pred             cccCccceEEcCCCC--eEEEecCccccccCCCcceeccccceecccCcCChhhccccccccCCCcCcchhhhhhHHHHH
Confidence            999999999988876  9999999998765432     122457999999999987432111223566899999987432


Q ss_pred             HHHHHHHHHhcCCCCC
Q psy320          167 FCEILEQCRLNHQDFR  182 (202)
Q Consensus       167 ~~~~~~~~~~~~~~~~  182 (202)
                            .+..|.+++.
T Consensus       210 ------el~tg~~~~~  219 (303)
T d1vjya_         210 ------EIARRCSIGG  219 (303)
T ss_dssp             ------HHHHTBCBTT
T ss_pred             ------HHhhCCCCCC
Confidence                  3444655443

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=99.97  E-value=8.1e-32  Score=209.81  Aligned_cols=159  Identities=17%  Similarity=0.175  Sum_probs=128.9

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ....+|+++|+.++.||  ||++++++|...  .....++||||+ +++|.++.     +++++..++.++.||+.||.|
T Consensus        74 ~~~~~Ei~il~~l~~hp--nIv~~~~~~~~~--~~~~~~~v~e~~~~~~L~~~~-----~~l~e~~i~~i~~qil~aL~~  144 (328)
T d3bqca1          74 KKIKREIKILENLRGGP--NIITLADIVKDP--VSRTPALVFEHVNNTDFKQLY-----QTLTDYDIRFYMYEILKALDY  144 (328)
T ss_dssp             HHHHHHHHHHHHHTTST--TBCCEEEEEECT--TTCSEEEEEECCCSCBGGGTT-----TSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCC--CCcEEEEEEEec--CCCceeEEEeecCCCcHHHHh-----cCCCHHHHHHHHHHHHHHHHH
Confidence            45678999999996566  999999999742  245799999999 78886542     459999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      ||+. ||+||||||+|||++.++. .++++|||.|+............+|+.|+|||.+...     ..++.++|+||+|
T Consensus       145 LH~~-gIvHrDiKp~NILi~~~~~-~vkl~DFG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~-----~~~~~~~DiwslG  217 (328)
T d3bqca1         145 CHSM-GIMHRDVKPHNVMIDHEHR-KLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDY-----QMYDYSLDMWSLG  217 (328)
T ss_dssp             HHHT-TEECCCCSGGGEEEETTTT-EEEECCGGGCEECCTTCCCCSCCSCGGGCCHHHHTTC-----CCCCTHHHHHHHH
T ss_pred             Hhhc-ccccccccccceEEcCCCC-eeeecccccceeccCCCcccccccCccccCcccccCC-----CCCCcccchhhhh
Confidence            9995 9999999999999997653 4899999999887655555567899999999998732     3467899999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      +.      +-.+..|..+|...
T Consensus       218 ~~------l~e~~~g~~pf~~~  233 (328)
T d3bqca1         218 CM------LASMIFRKEPFFHG  233 (328)
T ss_dssp             HH------HHHHHHTCSSSSCC
T ss_pred             hh------hHHhccCCCCCCCC
Confidence            73      33555577777544

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=99.97  E-value=9.3e-32  Score=205.75  Aligned_cols=158  Identities=17%  Similarity=0.171  Sum_probs=123.1

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ..+.+|+.+++++ +||  ||++++++|.    +....+++++++++++...+.... +++++..++.++.|++.||+||
T Consensus        45 ~~~~~E~~il~~l-~hp--nIv~~~~~~~----~~~~~~i~~e~~~~~~~~~~~~~~-~~l~~~~~~~i~~qi~~~L~~L  116 (286)
T d1ob3a_          45 STTIREISILKEL-KHS--NIVKLYDVIH----TKKRLVLVFEHLDQDLKKLLDVCE-GGLESVTAKSFLLQLLNGIAYC  116 (286)
T ss_dssp             HHHHHHHHGGGGC-CCT--TBCCEEEEEE----CSSCEEEEEECCSEEHHHHHHTST-TCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCC--cEEeeeeecc----cCCceeEEEEeehhhhHHHHHhhc-CCcchhhhHHHHHHHHHHHHHh
Confidence            4567889888888 455  9999999999    677899999999544444443332 5699999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC-CCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD-QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~-~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      |+. ||+||||||+|||++.++.  +|++|||.|........ .....+++.|++||.+...     ..++.++|+||+|
T Consensus       117 H~~-~IvHrDiKp~NIll~~~~~--~kl~DfG~a~~~~~~~~~~~~~~~~~~y~~pE~~~~~-----~~~~~~~DiwslG  188 (286)
T d1ob3a_         117 HDR-RVLHRDLKPQNLLINREGE--LKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGS-----KKYSTTIDIWSVG  188 (286)
T ss_dssp             HHT-TCCCSCCCGGGEEECTTSC--EEECCTTHHHHHCC---------CCCTTCCHHHHTTC-----CSCCTHHHHHHHH
T ss_pred             ccC-cEEecCCCCceeeEcCCCC--EEecccccceecccCccccceecccchhhhHHHHhCC-----CCCCcceeehhcC
Confidence            995 9999999999999998877  99999999988654332 2345788999999998732     3467899999998


Q ss_pred             HHHHHHHHHHHHHhcCCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +..      -.+..|.++|..
T Consensus       189 v~l------~el~~G~~pf~~  203 (286)
T d1ob3a_         189 CIF------AEMVNGTPLFPG  203 (286)
T ss_dssp             HHH------HHHHHSSCSCCC
T ss_pred             cHH------HHHHHCCCCCCC
Confidence            732      255558888754

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.2e-31  Score=208.78  Aligned_cols=158  Identities=19%  Similarity=0.251  Sum_probs=129.4

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecC--CceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGI--NGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~--~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ...+|+++|+.+ +||  ||++++++|...+.  ...++|+||||++.+|..+.+..   ++++..++.++.|++.||.|
T Consensus        63 ~~~~Ei~il~~l-~hp--niv~l~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~---~l~~~~~~~~~~qi~~aL~~  136 (346)
T d1cm8a_          63 RAYRELRLLKHM-RHE--NVIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKHE---KLGEDRIQFLVYQMLKGLRY  136 (346)
T ss_dssp             HHHHHHHHHHHC-CBT--TBCCCSEEECSCSSTTTCCCCEEEEECCSEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc-CCC--CeeEEEEEeccCccccccceEEEEEecccccHHHHHHhc---cccHHHHHHHHHHHHHHHHH
Confidence            456799999988 555  99999999985432  23478999999999999887653   49999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      ||++ ||+||||||+|||++.++.  +|++|||.|+....  ......+++.|+|||.+...     ..++.++|+||+|
T Consensus       137 LH~~-~IiHrDiKp~NIL~~~~~~--~kl~Dfg~a~~~~~--~~~~~~~t~~y~aPE~~~~~-----~~~~~~~DiwSlG  206 (346)
T d1cm8a_         137 IHAA-GIIHRDLKPGNLAVNEDCE--LKILDFGLARQADS--EMTGYVVTRWYRAPEVILNW-----MRYTQTVDIWSVG  206 (346)
T ss_dssp             HHHT-TEECCCCCGGGEEECTTCC--EEECCCTTCEECCS--SCCSSCSCGGGCCTHHHHTT-----TCCCTTHHHHHHH
T ss_pred             HHhC-CCcccccCcchhhcccccc--cccccccceeccCC--ccccccccccccCHHHHcCC-----CCCCccchhhcch
Confidence            9996 9999999999999998877  99999999987643  23346799999999998732     2357799999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      +.      +..+..|.++|...
T Consensus       207 vi------l~ell~g~~pf~~~  222 (346)
T d1cm8a_         207 CI------MAEMITGKTLFKGS  222 (346)
T ss_dssp             HH------HHHHHHSSCSSCCS
T ss_pred             HH------HHHHHHCcCCCCCC
Confidence            73      33566688888654

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.3e-31  Score=208.58  Aligned_cols=160  Identities=21%  Similarity=0.239  Sum_probs=127.8

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecC-CceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGI-NGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~-~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      .+.+|+.+|+.+ +||  ||+++++++..... .....|+++++++++|.+++...   ++++..++.++.|++.||.||
T Consensus        52 ~~~~Ei~il~~l-~hp--~iv~~~~~~~~~~~~~~~~~~l~~~~~~g~L~~~l~~~---~l~~~~i~~i~~qil~al~yL  125 (345)
T d1pmea_          52 RTLREIKILLRF-RHE--NIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKLLKTQ---HLSNDHICYFLYQILRGLKYI  125 (345)
T ss_dssp             HHHHHHHHHHHC-CCT--TBCCCCEEECCSSTTTCCCEEEEEECCCEEHHHHHHHC---CCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc-CCC--CCCcEEEEEeeccccccceEEEEEeecCCchhhhhhcC---CCCHHHHHHHHHHHHHHHHHH
Confidence            456899999999 565  99999999874321 22456777666699999999764   499999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeecccccccccccC----CCCCCCCccchhhHHHHhhhhccCCCCCCCcchh
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHD----QQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPT  159 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~----~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diw  159 (202)
                      |++ ||+||||||+|||++.++.  +||+|||+|+.......    .....+++.|+|||++..     ...++.++|+|
T Consensus       126 H~~-~iiHRDIKp~NILl~~~~~--~kl~DfG~a~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~-----~~~~~~~~Diw  197 (345)
T d1pmea_         126 HSA-NVLHRDLKPSNLLLNTTCD--LKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLN-----SKGYTKSIDIW  197 (345)
T ss_dssp             HHT-TEECCCCCGGGEEECTTCC--EEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCGGGTTT-----BCSCSTHHHHH
T ss_pred             HHC-CCcCCCCCcceEEECCCCC--EEEcccCceeeccCCCccceeeccccccceechHHHhhc-----CCCCCchhhhh
Confidence            996 9999999999999998877  99999999987654322    224578999999999863     23467799999


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCCCC
Q psy320          160 SIKMYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       160 sl~~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      |+|+.      +..+..|.++|...
T Consensus       198 SlG~i------l~eml~g~~pf~~~  216 (345)
T d1pmea_         198 SVGCI------LAEMLSNRPIFPGK  216 (345)
T ss_dssp             HHHHH------HHHHHHSSCSCCCS
T ss_pred             ccCce------ehHHhhCCCCCCCC
Confidence            99973      33566688888643

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.3e-31  Score=206.64  Aligned_cols=160  Identities=18%  Similarity=0.176  Sum_probs=131.2

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHL   83 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l   83 (202)
                      ...+|++++++++.||  ||+++++++.    .....+++|||+ +++|.+++....  .+++..++.++.|++.||.|+
T Consensus        74 ~~~~E~~il~~l~h~p--nIv~~~~~~~----~~~~~~~v~e~~~~~~L~~~i~~~~--~~~e~~~~~~~~Qi~~al~~l  145 (322)
T d1vzoa_          74 HTRTERQVLEHIRQSP--FLVTLHYAFQ----TETKLHLILDYINGGELFTHLSQRE--RFTEHEVQIYVGEIVLALEHL  145 (322)
T ss_dssp             GCCCHHHHHHHHHTCT--TBCCEEEEEE----ETTEEEEEECCCCSCBHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCC--eEEEeeeeec----cCCceeeeeecccccHHHHHHHhcc--cccHHHHHHHHHHHHHHHHHh
Confidence            4557999999995335  9999999999    466999999999 999999998774  489999999999999999999


Q ss_pred             HhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc--CCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           84 HTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH--DQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        84 h~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~--~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      |++ |++||||||+|||++.++.  ++|+|||+|+......  ......+++.|++||.+....    ..++.++||||+
T Consensus       146 H~~-~ivHrDiKp~Nill~~~~~--vkL~DFG~a~~~~~~~~~~~~~~~g~~~~~~pe~~~~~~----~~~~~ksDIWSl  218 (322)
T d1vzoa_         146 HKL-GIIYRDIKLENILLDSNGH--VVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGD----SGHDKAVDWWSL  218 (322)
T ss_dssp             HHT-TCCCCCCCGGGEEECTTSC--EEESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC-------CTHHHHHHH
T ss_pred             hcC-CEEeccCCccceeecCCCC--EEEeeccchhhhcccccccccccccccccchhHHhhcCC----cCCCchhhhHHH
Confidence            996 9999999999999998877  9999999998764422  233567999999999997432    235779999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCC
Q psy320          162 KMYTTFCEILEQCRLNHQDFRPDP  185 (202)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~  185 (202)
                      |+.      +..++.|..||....
T Consensus       219 G~i------LyelltG~~PF~~~~  236 (322)
T d1vzoa_         219 GVL------MYELLTGASPFTVDG  236 (322)
T ss_dssp             HHH------HHHHHHSSCTTSCTT
T ss_pred             HHH------HHHHHhCCCCCCCCC
Confidence            973      336666888886543

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.97  E-value=6.2e-31  Score=201.78  Aligned_cols=160  Identities=12%  Similarity=0.096  Sum_probs=129.7

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ...+|+++++.++.++  ||+.+++++.    .+...++||||++++|.+++.... +.++...+..++.|++.||.|||
T Consensus        46 ~~~~e~~~~~~l~~~~--~i~~~~~~~~----~~~~~~~vme~~~~~l~~~~~~~~-~~~~~~~~~~i~~q~~~~l~~lH  118 (293)
T d1csna_          46 QLRDEYRTYKLLAGCT--GIPNVYYFGQ----EGLHNVLVIDLLGPSLEDLLDLCG-RKFSVKTVAMAAKQMLARVQSIH  118 (293)
T ss_dssp             CHHHHHHHHHHTTTCT--TCCCEEEEEE----ETTEEEEEEECCCCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCC--CCCEEEEEee----cCCccEEEEEecCCCHHHHHHhhc-cchhhHHHHHHHHHHHHHHHHHH
Confidence            3567899999996555  9999999988    466899999999999999987654 56999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCC---cceeEEeecccccccccccC--------CCCCCCCccchhhHHHHhhhhccCCCCC
Q psy320           85 TKHNLVHTSIKPESIFFKADH---VYIMTLINIQQATTHQECHD--------QQSSSKTKSKIFCEILEQCRLNQDFRLD  153 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~---~~~~~l~Dfg~a~~~~~~~~--------~~~~~~~~~~~ape~~~~~~~~~~~~~~  153 (202)
                      ++ ||+||||||+|||++...   ...++|+|||+|+.......        .....||+.|+|||.+..      ..++
T Consensus       119 ~~-giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~GT~~y~aPE~~~~------~~~~  191 (293)
T d1csna_         119 EK-SLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLG------REQS  191 (293)
T ss_dssp             TT-TEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTT------CCCC
T ss_pred             HC-CceeccCCccceeecCcccccCCceEEcccceeEEcccCccccceeecccCceEEchhhcCHHHhcC------CCCC
Confidence            96 999999999999997532   23499999999987653221        123479999999999983      3488


Q ss_pred             CCcchhhHHHHHHHHHHHHHHHhcCCCCCCC
Q psy320          154 PRVDPTSIKMYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       154 ~~~Diwsl~~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      .++|+||+|+..      -.+..|..||...
T Consensus       192 ~~~DiwSlG~~l------~elltg~~Pf~~~  216 (293)
T d1csna_         192 RRDDLEALGHVF------MYFLRGSLPWQGL  216 (293)
T ss_dssp             HHHHHHHHHHHH------HHHHHSSCTTSSC
T ss_pred             hHHHHHHhhHHH------HHHHhCCCcCCCc
Confidence            899999999733      3566688888643

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7e-31  Score=206.56  Aligned_cols=158  Identities=20%  Similarity=0.251  Sum_probs=120.4

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecC--CceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGI--NGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~--~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ...+|+.+++++ +||  ||++++++|...+.  ...+.|+||||+.+++.+.+.    +.+++..++.++.|++.||.|
T Consensus        62 ~~~~Ei~il~~l-~hp--nIv~~~~~f~~~~~~~~~~~~~iv~Ey~~~~l~~~~~----~~~~~~~i~~~~~qil~gl~~  134 (355)
T d2b1pa1          62 RAYRELVLMKCV-NHK--NIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQ----MELDHERMSYLLYQMLCGIKH  134 (355)
T ss_dssp             HHHHHHHHHHHC-CCT--TBCCCSEEECSCCSTTTCCEEEEEEECCSEEHHHHHT----SCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc-CCC--CeeEEEEEEecccccccCceeEEEEeccchHHHHhhh----cCCCHHHHHHHHHHHHHHHHH
Confidence            456889999888 555  99999999975442  457999999999666666553    349999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      ||+. ||+||||||+|||++.++.  ++++|||.++............+|+.|+|||.+..      ..+++++|+||+|
T Consensus       135 LH~~-giiHrDlKP~Nil~~~~~~--~kl~df~~~~~~~~~~~~~~~~~t~~y~aPE~l~~------~~~~~~~DiwSlG  205 (355)
T d2b1pa1         135 LHSA-GIIHRDLKPSNIVVKSDCT--LKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILG------MGYKENVDIWSVG  205 (355)
T ss_dssp             HHHT-TCCCSCCCGGGEEECTTCC--EEECCCCC---------------CCTTCCHHHHTT------CCCCTTHHHHHHH
T ss_pred             hhhc-ccccccCCccccccccccc--eeeechhhhhccccccccccccccccccChhhhcC------CCCCCCccccccc
Confidence            9996 9999999999999998877  99999999988765555556689999999999974      3478899999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      +.      +-.+..|.++|+..
T Consensus       206 ~~------l~ell~g~~pF~~~  221 (355)
T d2b1pa1         206 CI------MGEMVRHKILFPGR  221 (355)
T ss_dssp             HH------HHHHHHSSCSSCCS
T ss_pred             ch------HHHHhhCCCCCCCC
Confidence            73      33666699988644

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3e-30  Score=200.04  Aligned_cols=162  Identities=16%  Similarity=0.167  Sum_probs=123.6

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEec----CCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTG----INGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEG   79 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~----~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~   79 (202)
                      ....+|+++|+++ +||  ||++++++|....    ....+.|+||||+.+++....... .+.+++..++.++.|++.|
T Consensus        54 ~~~~~E~~il~~l-~h~--nii~~~~~~~~~~~~~~~~~~~~~iv~e~~~~~~~~~~~~~-~~~~~~~~~~~i~~qil~~  129 (318)
T d3blha1          54 ITALREIKILQLL-KHE--NVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNV-LVKFTLSEIKRVMQMLLNG  129 (318)
T ss_dssp             HHHHHHHHHHHHC-CCT--TBCCEEEEEEC----------CEEEEEECCCEEHHHHHTCT-TCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-cCC--CccceEeeeecccccccccCceEEEEEeccCCCccchhhhc-ccccccHHHHHHHHHHHHH
Confidence            4567899999999 565  9999999986422    124578999999955555444332 3569999999999999999


Q ss_pred             HHHHHhhCCccccCCCCCceeeecCCcceeEEeeccccccccccc-----CCCCCCCCccchhhHHHHhhhhccCCCCCC
Q psy320           80 LNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECH-----DQQSSSKTKSKIFCEILEQCRLNQDFRLDP  154 (202)
Q Consensus        80 l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~-----~~~~~~~~~~~~ape~~~~~~~~~~~~~~~  154 (202)
                      |.|||+. ||+||||||+|||++.++.  +|++|||+++......     ......+|+.|+|||.+..     ...|+.
T Consensus       130 l~~lH~~-~ivHrDlKp~NILl~~~~~--~kl~dfg~~~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~-----~~~~~~  201 (318)
T d3blha1         130 LYYIHRN-KILHRDMKAANVLITRDGV--LKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLG-----ERDYGP  201 (318)
T ss_dssp             HHHHHHT-TEECCCCCGGGEEECTTSC--EEECCCTTCEECCC-----CCCCCSCCSCGGGCCHHHHTT-----CSSCCT
T ss_pred             HHHhccC-CEEecCcCchheeecCCCc--EEeeecceeeecccccccccccccceecCHHHhhHHHHcC-----CCCCCc
Confidence            9999996 9999999999999998887  9999999998664322     1223579999999999873     234788


Q ss_pred             CcchhhHHHHHHHHHHHHHHHhcCCCCCC
Q psy320          155 RVDPTSIKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       155 ~~Diwsl~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      ++||||+|+..+      .+..|.++|..
T Consensus       202 k~DiwSlGvil~------el~~g~~pf~~  224 (318)
T d3blha1         202 PIDLWGAGCIMA------EMWTRSPIMQG  224 (318)
T ss_dssp             HHHHHHHHHHHH------HHHHSSCSCCC
T ss_pred             HHHcccCCceee------eHhhCCCCCCC
Confidence            999999987322      45557777753

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=3.7e-30  Score=197.92  Aligned_cols=159  Identities=13%  Similarity=0.133  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLH   84 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh   84 (202)
                      ...+|+++++.++.++  +|+.+.+++.    .+...++||||+++++.+.+.... +++++..+..++.|++.||.|||
T Consensus        48 ~~~~E~~i~~~l~~~~--~i~~~~~~~~----~~~~~~ivme~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH  120 (299)
T d1ckia_          48 QLHIESKIYKMMQGGV--GIPTIRWCGA----EGDYNVMVMELLGPSLEDLFNFCS-RKFSLKTVLLLADQMISRIEYIH  120 (299)
T ss_dssp             CHHHHHHHHHHSTTST--TCCCEEEEEE----ETTEEEEEEECCCCBHHHHHHHTT-TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCCC--cccEEEEEEe----cCCEEEEEEEEcCCchhhhhhhcc-CCCcHHHHHHHHHHHHHHHHHHH
Confidence            4567899999885332  5666666555    466899999999888888776544 56999999999999999999999


Q ss_pred             hhCCccccCCCCCceeeecCC-cceeEEeecccccccccccC--------CCCCCCCccchhhHHHHhhhhccCCCCCCC
Q psy320           85 TKHNLVHTSIKPESIFFKADH-VYIMTLINIQQATTHQECHD--------QQSSSKTKSKIFCEILEQCRLNQDFRLDPR  155 (202)
Q Consensus        85 ~~~~ivH~dl~p~nil~~~~~-~~~~~l~Dfg~a~~~~~~~~--------~~~~~~~~~~~ape~~~~~~~~~~~~~~~~  155 (202)
                      ++ ||+||||||+|||++..+ ...++++|||+|+.......        .....||+.|+|||.+..      ..++.+
T Consensus       121 ~~-~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~  193 (299)
T d1ckia_         121 SK-NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLG------IEQSRR  193 (299)
T ss_dssp             HT-TEECSCCCGGGEEECCGGGTTCEEECCCSSCEECBCTTTCCBCCCCBCCSCCCCSSSCCHHHHTT------BCCCHH
T ss_pred             HC-CeeeccCCHhhccccccCCCceeeeeccCcceeccccccccceeccccCCcCCCccccCHHHHhC------CCCCCh
Confidence            96 999999999999987533 23499999999998754321        123479999999999884      347889


Q ss_pred             cchhhHHHHHHHHHHHHHHHhcCCCCCC
Q psy320          156 VDPTSIKMYTTFCEILEQCRLNHQDFRP  183 (202)
Q Consensus       156 ~Diwsl~~~~~~~~~~~~~~~~~~~~~~  183 (202)
                      +|+||+|+..+      .+..|.++|..
T Consensus       194 ~DiwSlG~~l~------el~tg~~P~~~  215 (299)
T d1ckia_         194 DDLESLGYVLM------YFNLGSLPWQG  215 (299)
T ss_dssp             HHHHHHHHHHH------HHHHSSCTTCC
T ss_pred             hhEEecCHHHH------HHHhCCCcccc
Confidence            99999986322      33345555543

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=9.5e-31  Score=202.07  Aligned_cols=142  Identities=15%  Similarity=0.188  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcC--------CCCCCHHHHHHHHHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQK--------FQPAPLVVAKIIVNQI   76 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~--------~~~~~~~~~~~~~~qi   76 (202)
                      +.+|+++++++ +||  ||++++++|.    .....++||||+ +|+|.+++....        ...++...+..++.|+
T Consensus        70 ~~~E~~il~~l-~h~--nIv~~~~~~~----~~~~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i  142 (308)
T d1p4oa_          70 FLNEASVMKEF-NCH--HVVRLLGVVS----QGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEI  142 (308)
T ss_dssp             HHHHHHHGGGC-CCT--TBCCEEEEEC----SSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHc-CCC--CEeeeeeEEe----cCCceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHH
Confidence            46778777777 455  9999999998    566899999999 999999986432        1236888999999999


Q ss_pred             HHHHHHHHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCC---CCCCCCccchhhHHHHhhhhccCCCCC
Q psy320           77 LEGLNHLHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQ---QSSSKTKSKIFCEILEQCRLNQDFRLD  153 (202)
Q Consensus        77 ~~~l~~lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~---~~~~~~~~~~ape~~~~~~~~~~~~~~  153 (202)
                      +.||.|||++ +|+||||||+|||++.++.  +||+|||+|+........   ....+++.|+|||.+....      ++
T Consensus       143 a~gl~~LH~~-~ivHrDlk~~NiLld~~~~--~Kl~DFGla~~~~~~~~~~~~~~~~~t~~y~aPe~l~~~~------~~  213 (308)
T d1p4oa_         143 ADGMAYLNAN-KFVHRDLAARNCMVAEDFT--VKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGV------FT  213 (308)
T ss_dssp             HHHHHHHHHT-TCBCSCCSGGGEEECTTCC--EEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCC------CC
T ss_pred             HHHHHHHhhC-CeeeceEcCCceeecCCce--EEEeecccceeccCCcceeeccceecccccCCHHHHccCC------CC
Confidence            9999999996 9999999999999998776  999999999876543322   2346889999999998443      77


Q ss_pred             CCcchhhHHH
Q psy320          154 PRVDPTSIKM  163 (202)
Q Consensus       154 ~~~Diwsl~~  163 (202)
                      .++|+||+|+
T Consensus       214 ~~~Dv~S~G~  223 (308)
T d1p4oa_         214 TYSDVWSFGV  223 (308)
T ss_dssp             HHHHHHHHHH
T ss_pred             cccccccHHH
Confidence            8999999964

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.8e-29  Score=192.15  Aligned_cols=143  Identities=19%  Similarity=0.178  Sum_probs=118.7

Q ss_pred             hHHHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ..+.+|+.+++.+ +||  ||++++++|.    +....++|++++ +++|..++...  +.+++..++.++.|++.||.|
T Consensus        46 ~~~~~E~~il~~l-~h~--niv~~~~~~~----~~~~~~iv~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~q~~~aL~~  116 (292)
T d1unla_          46 SSALREICLLKEL-KHK--NIVRLHDVLH----SDKKLTLVFEFCDQDLKKYFDSCN--GDLDPEIVKSFLFQLLKGLGF  116 (292)
T ss_dssp             HHHHHHHHHHTTC-CCT--TBCCEEEEEE----CSSEEEEEEECCSEEHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc-CcC--CEEeeccccc----cccceeEEeeeccccccccccccc--cccchhHHHHHHHHHHHHHHH
Confidence            3456788888877 455  9999999999    677999999999 88887777654  569999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCC-CCCCCccchhhHHHHhhhhccCCCCCCCcchhhH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQ-SSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSI  161 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~-~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl  161 (202)
                      ||++ ||+||||||+|||++.++.  +|++|||.|+......... ...+++.|.+||.+...     ..++.++|+||+
T Consensus       117 lH~~-~IvHrDiKP~NIli~~~~~--~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~pe~~~~~-----~~~~~~~DiwSl  188 (292)
T d1unla_         117 CHSR-NVLHRDLKPQNLLINRNGE--LKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGA-----KLYSTSIDMWSA  188 (292)
T ss_dssp             HHHT-TEECCCCSGGGEEECTTCC--EEECCCTTCEECCSCCSCCCSCCSCGGGCCHHHHTTC-----SCCCTHHHHHHH
T ss_pred             hhcC-CEeeecccCcccccccCCc--eeeeecchhhcccCCCccceeeccccchhhhhHhccC-----CCCCchhhcccc
Confidence            9996 9999999999999998877  9999999998875443332 44677889999988733     235779999999


Q ss_pred             HH
Q psy320          162 KM  163 (202)
Q Consensus       162 ~~  163 (202)
                      |+
T Consensus       189 G~  190 (292)
T d1unla_         189 GC  190 (292)
T ss_dssp             HH
T ss_pred             ch
Confidence            86

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.7e-29  Score=197.94  Aligned_cols=158  Identities=20%  Similarity=0.265  Sum_probs=120.7

Q ss_pred             HHHHHHHHHHHHhcCCCccceeeeeeeEEecC--CceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q psy320            5 YATNLIKTLIEIQKHPSDKLMKLLDHFQVTGI--NGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNH   82 (202)
Q Consensus         5 ~~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~--~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~   82 (202)
                      ...+|+++|+.+ +||  ||++++++|.....  +....++++++.+++|.+++..   +++++..++.++.|++.||.|
T Consensus        63 ~~~~Ei~il~~l-~h~--~iv~~~~~~~~~~~~~~~~~~~i~~~~~gg~L~~~~~~---~~l~e~~~~~i~~qil~aL~~  136 (348)
T d2gfsa1          63 RTYRELRLLKHM-KHE--NVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKC---QKLTDDHVQFLIYQILRGLKY  136 (348)
T ss_dssp             HHHHHHHHHHHC-CCT--TBCCCSEEECSCSSTTTCCCCEEEEECCSEEHHHHHTT---CCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc-CCC--CeeeEEEEEeeccccccCceEEEEEeecCCchhhhccc---ccccHHHHHHHHHHHHHHHHH
Confidence            456899999999 555  99999999874321  2334555554449999999854   459999999999999999999


Q ss_pred             HHhhCCccccCCCCCceeeecCCcceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCCCCCCcchhhHH
Q psy320           83 LHTKHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFRLDPRVDPTSIK  162 (202)
Q Consensus        83 lh~~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~~~~~~Diwsl~  162 (202)
                      ||++ ||+||||||+|||++.++.  +|++|||.|.....  ......+++.|+|||.....     ..++.++|+||+|
T Consensus       137 LH~~-giiHrDiKp~NILi~~~~~--~kl~dfg~a~~~~~--~~~~~~g~~~y~apE~~~~~-----~~~~~~~DiwSlG  206 (348)
T d2gfsa1         137 IHSA-DIIHRDLKPSNLAVNEDCE--LKILDFGLARHTDD--EMTGYVATRWYRAPEIMLNW-----MHYNQTVDIWSVG  206 (348)
T ss_dssp             HHHT-TCCCCCCCGGGEEECTTCC--EEECCC----CCTG--GGSSSCHHHHTSCHHHHTTC-----SCCCTTHHHHHHH
T ss_pred             HHhC-CCcccccCCcccccccccc--ccccccchhcccCc--ccccccccccccCchhhcCC-----ccCCcccchhhhh
Confidence            9996 9999999999999998887  99999999977642  23346788999999997732     2356799999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCC
Q psy320          163 MYTTFCEILEQCRLNHQDFRPD  184 (202)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~  184 (202)
                      +.      +..+..|.++|+..
T Consensus       207 v~------l~~ll~g~~pF~~~  222 (348)
T d2gfsa1         207 CI------MAELLTGRTLFPGT  222 (348)
T ss_dssp             HH------HHHHHHSSCSCCCS
T ss_pred             HH------HHHHHhCCCCCCCC
Confidence            73      33566688888643

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=3.4e-26  Score=179.79  Aligned_cols=170  Identities=26%  Similarity=0.365  Sum_probs=126.8

Q ss_pred             hHHHHHHHHHHHHhcC--------CCccceeeeeeeEEecCCceEEEEEEccccccHHHHHHHcCCCCCCHHHHHHHHHH
Q psy320            4 NYATNLIKTLIEIQKH--------PSDKLMKLLDHFQVTGINGTHVCTVTEIMAECLCNYMIRQKFQPAPLVVAKIIVNQ   75 (202)
Q Consensus         4 ~~~~~e~~~l~~l~~~--------~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~~~sL~~~~~~~~~~~~~~~~~~~~~~q   75 (202)
                      +...+|+++++.+...        .|+||+++++++...+......++.++..+++............+++..++.++.|
T Consensus        54 ~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~q  133 (362)
T d1q8ya_          54 EAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQ  133 (362)
T ss_dssp             HHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeeeccccceeeeeeecccccccccccccccccCCcHHHHHHHHHH
Confidence            3456789988888421        14599999999987664444555555555666666666666677999999999999


Q ss_pred             HHHHHHHHHhhCCccccCCCCCceeeecCCc----ceeEEeecccccccccccCCCCCCCCccchhhHHHHhhhhccCCC
Q psy320           76 ILEGLNHLHTKHNLVHTSIKPESIFFKADHV----YIMTLINIQQATTHQECHDQQSSSKTKSKIFCEILEQCRLNQDFR  151 (202)
Q Consensus        76 i~~~l~~lh~~~~ivH~dl~p~nil~~~~~~----~~~~l~Dfg~a~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~~  151 (202)
                      ++.||.|||+..||+||||||+|||++.++.    ..++++|||.|.....  ......+++.|+|||.+...      .
T Consensus       134 il~al~~lh~~~~IvHrDlKp~NIll~~~~~~~~~~~~kl~dfg~s~~~~~--~~~~~~gt~~y~aPE~~~~~------~  205 (362)
T d1q8ya_         134 LLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDE--HYTNSIQTREYRSPEVLLGA------P  205 (362)
T ss_dssp             HHHHHHHHHHTTCEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETTB--CCCSCCSCGGGCCHHHHHTC------C
T ss_pred             HHHHHHHHhhhcCcccccCChhHeeeeccCcccccceeeEeeccccccccc--ccccccccccccChhhcccc------C
Confidence            9999999998449999999999999987643    2489999999987642  33456799999999998843      4


Q ss_pred             CCCCcchhhHHHHHHHHHHHHHHHhcCCCCCCCCCC
Q psy320          152 LDPRVDPTSIKMYTTFCEILEQCRLNHQDFRPDPRV  187 (202)
Q Consensus       152 ~~~~~Diwsl~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (202)
                      ++.++|+||+|+      ++..+..|.++|.++...
T Consensus       206 ~~~~~DiwSlG~------il~el~~g~~pF~~~~~~  235 (362)
T d1q8ya_         206 WGCGADIWSTAC------LIFELITGDFLFEPDEGH  235 (362)
T ss_dssp             CCTHHHHHHHHH------HHHHHHHSSCCC------
T ss_pred             CCccccccchHH------HHHHHHHCCCCCCCCccc
Confidence            888999999997      334666699999876543

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.71  E-value=4.3e-18  Score=121.87  Aligned_cols=91  Identities=15%  Similarity=0.240  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy320            7 TNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCNYMIRQKFQPAPLVVAKIIVNQILEGLNHLHT   85 (202)
Q Consensus         7 ~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~   85 (202)
                      .+|...+.++.   |++++..+++..        .+++|||+ +..+.         .++...+..++.|++.++.|||+
T Consensus        62 ~~e~~~l~~l~---~~~v~~~~~~~~--------~~lvme~~~~~~~~---------~l~~~~~~~i~~ql~~~l~~lH~  121 (191)
T d1zara2          62 RNEFRALQKLQ---GLAVPKVYAWEG--------NAVLMELIDAKELY---------RVRVENPDEVLDMILEEVAKFYH  121 (191)
T ss_dssp             HHHHHHHHHTT---TSSSCCEEEEET--------TEEEEECCCCEEGG---------GCCCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcc---CCCcceEEEecC--------CEEEEEeecccccc---------chhhHHHHHHHHHHHHHHHHHhh
Confidence            34566666663   448877765532        27999999 44432         14556677899999999999999


Q ss_pred             hCCccccCCCCCceeeecCCcceeEEeecccccccc
Q psy320           86 KHNLVHTSIKPESIFFKADHVYIMTLINIQQATTHQ  121 (202)
Q Consensus        86 ~~~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~~  121 (202)
                      . ||+||||||+|||++.++   ++++|||+|+...
T Consensus       122 ~-giiHrDiKP~NILv~~~~---~~liDFG~a~~~~  153 (191)
T d1zara2         122 R-GIVHGDLSQYNVLVSEEG---IWIIDFPQSVEVG  153 (191)
T ss_dssp             T-TEECSCCSTTSEEEETTE---EEECCCTTCEETT
T ss_pred             C-CEEEccCChhheeeeCCC---EEEEECCCcccCC
Confidence            5 999999999999998543   8999999987653

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.83  E-value=4.3e-05  Score=55.32  Aligned_cols=43  Identities=5%  Similarity=-0.069  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc-cccHHH
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM-AECLCN   54 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~-~~sL~~   54 (202)
                      ..+|...++.+.++-  -+.+++.++..    +...++||+++ |.++.+
T Consensus        56 ~~~E~~~l~~l~~~v--pvP~vl~~~~~----~~~~~lv~~~l~G~~~~~   99 (263)
T d1j7la_          56 VEREKDMMLWLEGKL--PVPKVLHFERH----DGWSNLLMSEADGVLCSE   99 (263)
T ss_dssp             HHHHHHHHHHHTTTS--CCCCEEEEEEE----TTEEEEEEECCSSEEHHH
T ss_pred             HHHHHHHHHHHhccC--CCCcEEEEEec----CCceEEEEEecccccccc
Confidence            457888888886543  46777777763    45789999999 766644

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=97.15  E-value=0.00055  Score=48.99  Aligned_cols=31  Identities=10%  Similarity=0.098  Sum_probs=25.6

Q ss_pred             CccccCCCCCceeeecCCcceeEEeeccccccc
Q psy320           88 NLVHTSIKPESIFFKADHVYIMTLINIQQATTH  120 (202)
Q Consensus        88 ~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~  120 (202)
                      .++|+|+.|.||+++.+..  +.++||+.+...
T Consensus       176 ~liHgD~~~~Nvl~~~~~~--~~iID~~~~~~g  206 (255)
T d1nd4a_         176 VVTHGDACLPNIMVENGRF--SGFIDCGRLGVA  206 (255)
T ss_dssp             EEECSSCCGGGEEEETTEE--EEECCCTTCEEE
T ss_pred             eEEeCCCCCcceEEeCCce--EEEEEchhcccC
Confidence            3799999999999987543  679999987653

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=96.88  E-value=0.0016  Score=50.04  Aligned_cols=30  Identities=23%  Similarity=0.317  Sum_probs=25.3

Q ss_pred             CccccCCCCCceeeecCCcceeEEeeccccccc
Q psy320           88 NLVHTSIKPESIFFKADHVYIMTLINIQQATTH  120 (202)
Q Consensus        88 ~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~  120 (202)
                      .++|+|+.|.|||++.++   ++++||..|...
T Consensus       224 ~LiHGDl~~gNIlv~~~~---~~vID~E~a~~G  253 (392)
T d2pula1         224 TLIHGDLHTGSIFASEHE---TKVIDPEFAFYG  253 (392)
T ss_dssp             EEECSCCCGGGEEECSSC---EEECCCTTCEEE
T ss_pred             ceeccCCcCCceeEcCCc---eEEechhhcccC
Confidence            589999999999998653   899999887653

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.75  E-value=0.0068  Score=46.29  Aligned_cols=33  Identities=12%  Similarity=0.029  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHhcCCCccceeeeeeeEEecCCceEEEEEEccc
Q psy320            6 ATNLIKTLIEIQKHPSDKLMKLLDHFQVTGINGTHVCTVTEIM   48 (202)
Q Consensus         6 ~~~e~~~l~~l~~~~h~~Iv~l~~~~~~~~~~~~~~~lv~e~~   48 (202)
                      ..+|.++++.+.++.  -.++++++|.    +    .+|++|+
T Consensus        91 r~~E~~i~~~ls~~g--l~Pkll~~~~----~----g~I~efi  123 (395)
T d1nw1a_          91 LVAESVIFTLLSERH--LGPKLYGIFS----G----GRLEEYI  123 (395)
T ss_dssp             HHHHHHHHHHHHHTT--SSSCEEEEET----T----EEEECCC
T ss_pred             HHHHHHHHHHHHhCC--CCCeEEEEcC----C----ceEEEEe
Confidence            346888899887765  4567777775    2    3788888

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.35  E-value=0.0025  Score=47.10  Aligned_cols=30  Identities=23%  Similarity=0.495  Sum_probs=26.1

Q ss_pred             CccccCCCCCceeeecCCcceeEEeecccccc
Q psy320           88 NLVHTSIKPESIFFKADHVYIMTLINIQQATT  119 (202)
Q Consensus        88 ~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~  119 (202)
                      |++|+|+.+.|++++.+..  ..++||+.+..
T Consensus       184 giIHgDl~~dNvl~~~~~v--~gvIDF~~~~~  213 (316)
T d2ppqa1         184 GVIHADLFQDNVFFLGDEL--SGLIDFYFACN  213 (316)
T ss_dssp             EEECSCCCGGGEEEETTEE--EEECCCTTCEE
T ss_pred             ccccCCcchhhhhcccccc--eeEeccccccc
Confidence            7999999999999987653  68999999875

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=91.40  E-value=0.032  Score=41.19  Aligned_cols=29  Identities=10%  Similarity=0.263  Sum_probs=23.8

Q ss_pred             CccccCCCCCceeeecCCcceeEEeeccccccc
Q psy320           88 NLVHTSIKPESIFFKADHVYIMTLINIQQATTH  120 (202)
Q Consensus        88 ~ivH~dl~p~nil~~~~~~~~~~l~Dfg~a~~~  120 (202)
                      +++|+|+.+.|||++. +   ..++||+.+...
T Consensus       193 ~liHgDlh~~NvL~~~-~---~~~IDFdd~~~g  221 (325)
T d1zyla1         193 LRLHGDCHAGNILWRD-G---PMFVDLDDARNG  221 (325)
T ss_dssp             EECCSSCSGGGEEESS-S---EEECCCTTCCEE
T ss_pred             eeecCCCCcccEEEeC-C---ceEEechhcccC
Confidence            6899999999999963 3   458999998764