Diaphorina citri psyllid: psy3224

Local Sequence Feature Prediction

Prediction and Method	Result

Residue Number Marker

Protein Sequence

Secondary Structure (Consensus)

Disordered Region (Consensus)

Transmembrane Helix (Consensus)

Signal Peptide (Consensus)

Coiled Coil (COILS)

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------128

SLGKGHKGYSEYSVSKLKTQLAYVVGQTVVDPKGYLTDLQSMIPTYGGDINDIKKARLLLKSKHFMGVPAPLGYVAGVGRGATGFTTRSDIGPARDANDVSDDRHAAPVKRKKKDEEEDDEEDLNDSNFDEFNGYGGSLFNKDPYDKDDEEADMIYEEIDKRMDEKRKDYREKRLREELERYRQERPKIQQQFSDLKRGLVTVSMDEWKNEGQVVGQAIPPPPIPLVNRNKKHFMGVPAPLGYVAGVGRGATGFTTRSDIGPARDANDVSDDRHAAPVKRKKKDEEEDDEEDLNDSNFDEFNGYGGSLFNKDPYDKDDEEADMIYEEIDKRMDEKRKDYREKRLREELERYRQERPKIQQQFSDLKRGLVTVSMDEWKNVPEVGDARNRKQRNPRAEKFTPLPDSVLRGNLGGESTGAIDPNSGLMSQIPGTATPGMLTPSGDLDLRKMGQARNTLMNVKLNQISDSVVGQTVVDPKGYLTDLQSMIPTYGGDINDIKKARLLLKSVRETNPNHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSEDLWLEAARLQPVDTARAVIAQAVRHIPTSVRIWIKAADLETETKAKRRVYRKALEHIPNSVRLWKAAVELEDPEDARILLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINREHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEIINGTEETQAEVKKRCLAAEPKHGENWCRVAKNVSNWKLPRETILSLVAKDLPIPI

cccccccccccccHHHccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccHHHHccccccccHHHHHcccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHcccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHcHHcccccHHHHHHHHHccccccc

******KGYSEYSVSKLKTQLAYVVGQTVVDPKGYLTDLQSMIPTYGGDINDIKKARLLLKSKHFMGVPAPLGYVAGVGRGATGFTTRSDIG***********************************NFDEFNGYGGSLFNKDPYDKDDEEADMIYEEID********************************FSDLKRGLVTVSMDEWKNEGQVVGQAIPPPPIPLVNRNKKHFMGVPAPLGYVAGVGRGATGFT******************************************FDEFNGYGGSLFNKDPYDKDDEEADMIYEEID********************************FSDLKRGLVTVSMDEWKNVPEV*****************PLPDSVLR****************************MLTPSGDLDLRKMGQ***TLMNVKLNQISDSVVGQTVVDPKGYLTDLQSMIPTYGGDINDIKKARLLLKSVRETNPNHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSEDLWLEAARLQPVDTARAVIAQAVRHIPTSVRIWIKAADLETETKAKRRVYRKALEHIPNSVRLWKAAVELEDPEDARILLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINREHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEIINGTEETQAEVKKRCLAAEPKHGENWCRVAKNVSNWKLPRETILSLVAKDLPIPI

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SLGKGHKGYSEYSVSKLKTQLAYVVGQTVVDPKGYLTDLQSMIPTYGGDINDIKKARLLLKSKHFMGVPAPLGYVAGVGRGATGFTTRSDIGPARDANDVSDDRHAAPVKRKKKDEEEDDEEDLNDSNFDEFNGYGGSLFNKDPYDKDDEEADMIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFSDLKRGLVTVSMDEWKNEGQVVGQAIPPPPIPLVNRNKKHFMGVPAPLGYVAGVGRGATGFTTRSDIGPARDANDVSDDRHAAPVKRKKKDEEEDDEEDLNDSNFDEFNGYGGSLFNKDPYDKDDEEADMIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFSDLKRGLVTVSMDEWKNVPEVGDARNRKQRNPRAEKFTPLPDSVLRGNLGGESTGAIDPNSGLMSQIPGTATPGMLTPSGDLDLRKMGQARNTLMNVKLNQISDSVVGQTVVDPKGYLTDLQSMIPTYGGDINDIKKARLLLKSVRETNPNHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSEDLWLEAARLQPVDTARAVIAQAVRHIPTSVRIWIKAADLETETKAKRRVYRKALEHIPNSVRLWKAAVELEDPEDARILLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINREHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxPNSEEIWLAxxxxxxxxxxxxxxxxxxxxxxxxAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEIINGTEETQAEVKKRCLAAEPKHGENWCRVAKNVSNWKLPRETILSLVAKDLPIPI

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries

Annotation	Function Description	Confidence Level	Reference Protein
Pre-mRNA-processing factor 6	Involved in pre-mRNA splicing. May act in the tri-snRNP complex as a bridging factor between U5 and U4/U6 snRNPs in the late step of spliceosome assembly (By similarity). May be necessary for tri-snRNP formation (By similarity). Enhances dihydrotestosterone-induced transactivation activity of AR, as well as dexamethasone-induced transactivation activity of NR3C1, but does not affect estrogen-induced transactivation.	confident	Q2KJJ0
Pre-mRNA-processing factor 6	Involved in pre-mRNA splicing. May act in the tri-snRNP complex as a bridging factor between U5 and U4/U6 snRNPs in the late step of spliceosome assembly. May be necessary for tri-snRNP formation. Enhances dihydrotestosterone-induced transactivation activity of AR, as well as dexamethasone-induced transactivation activity of NR3C1, but does not affect estrogen-induced transactivation.	confident	O94906
Pre-mRNA-processing factor 6	Involved in pre-mRNA splicing. May act in the tri-snRNP complex as a bridging factor between U5 and U4/U6 snRNPs in the late step of spliceosome assembly (By similarity). May be necessary for tri-snRNP formation (By similarity). Enhances dihydrotestosterone-induced transactivation activity of AR, as well as dexamethasone-induced transactivation activity of NR3C1, but does not affect estrogen-induced transactivation.	confident	Q5RCC2

Prediction of Gene Ontology Terms

GO Term	Description	Confidence Level	Parent GO Terms
GO:0071011 [CC]	precatalytic spliceosome	probable	GO:0005575, GO:0032991, GO:0043231, GO:0005634, GO:0044464, GO:0005623, GO:0030529, GO:0044446, GO:0043229, GO:0044428, GO:0044422, GO:0044424, GO:0005622, GO:0043227, GO:0043226, GO:0005681
GO:0071013 [CC]	catalytic step 2 spliceosome	probable	GO:0005575, GO:0032991, GO:0043231, GO:0005634, GO:0044464, GO:0005623, GO:0030529, GO:0044446, GO:0043229, GO:0044428, GO:0044422, GO:0044424, GO:0005622, GO:0043227, GO:0043226, GO:0005681
GO:0043021 [MF]	ribonucleoprotein complex binding	probable	GO:0003674, GO:0005488
GO:0005682 [CC]	U5 snRNP	probable	GO:0005575, GO:0032991, GO:0043231, GO:0030532, GO:0005634, GO:0044464, GO:0005623, GO:0030529, GO:0044446, GO:0043229, GO:0044428, GO:0044424, GO:0005622, GO:0043227, GO:0043226, GO:0044422
GO:0022008 [BP]	neurogenesis	probable	GO:0032502, GO:0048856, GO:0044707, GO:0007399, GO:0048869, GO:0030154, GO:0008150, GO:0032501, GO:0044763, GO:0048731, GO:0009987, GO:0007275, GO:0044699
GO:0051179 [BP]	localization	probable	GO:0008150
GO:0000381 [BP]	regulation of alternative mRNA splicing, via spliceosome	probable	GO:0051252, GO:0080090, GO:0019222, GO:0060255, GO:0050684, GO:0043484, GO:0031323, GO:0050794, GO:0050789, GO:0019219, GO:0065007, GO:0051171, GO:0048024, GO:0008150, GO:0010468
GO:0046540 [CC]	U4/U6 x U5 tri-snRNP complex	probable	GO:0005575, GO:0032991, GO:0043231, GO:0030532, GO:0005634, GO:0044464, GO:0005623, GO:0030529, GO:0044446, GO:0043229, GO:0044428, GO:0044424, GO:0005622, GO:0043227, GO:0043226, GO:0044422
GO:0071001 [CC]	U4/U6 snRNP	probable	GO:0005575, GO:0032991, GO:0043231, GO:0030532, GO:0005634, GO:0044464, GO:0005623, GO:0030529, GO:0044446, GO:0043229, GO:0044428, GO:0044424, GO:0005622, GO:0043227, GO:0043226, GO:0044422
GO:0045944 [BP]	positive regulation of transcription from RNA polymerase II promoter	probable	GO:0009893, GO:0019222, GO:0031328, GO:0031326, GO:0031325, GO:2001141, GO:0031323, GO:0010628, GO:0050789, GO:0080090, GO:0010604, GO:0051171, GO:0009891, GO:2000112, GO:0019219, GO:0010556, GO:0065007, GO:0048518, GO:0010468, GO:0045935, GO:0060255, GO:0009889, GO:0050794, GO:0008150, GO:0045893, GO:0051173, GO:0051252, GO:0051254, GO:0006355, GO:0010557, GO:0006357, GO:0048522
GO:0003723 [MF]	RNA binding	probable	GO:0097159, GO:0003674, GO:1901363, GO:0003676, GO:0005488
GO:0010467 [BP]	gene expression	probable	GO:0071704, GO:0008150, GO:0008152, GO:0043170

Prediction of Enzyme Commission Number

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2Y4T, chain A
Confidence level:very confident
Coverage over the Query: 667-703,746-1042
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Template: 3IEG, chain A
Confidence level:very confident
Coverage over the Query: 826-945,968-1107,1179-1255
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Template: 1W3B, chain A
Confidence level:very confident
Coverage over the Query: 751-799,846-1130,1172-1227
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Template: 2UY1, chain A
Confidence level:very confident
Coverage over the Query: 498-513,529-632,649-689,723-810,821-920,931-962
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Template: 2XPI, chain A
Confidence level:very confident
Coverage over the Query: 708-1134,1171-1256
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Template: 4E6H, chain A
Confidence level:very confident
Coverage over the Query: 595-726,755-934,952-1106
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Template: 3Q7A, chain A
Confidence level:confident
Coverage over the Query: 936-1136,1153-1221
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Template: 3UGM, chain A
Confidence level:probable
Coverage over the Query: 509-725,739-817,837-1009
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View the model in PyMOL