Diaphorina citri psyllid: psy3244

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------57
MTRLLLFKKSDKFFHRDPHSEITEKAEPKIELPPPSRNSDEPIAKKRKWINKQRVLIFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKDTLTVVNERRWINKQRVLIFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKDTLTVVNEICEMKNCNKCILFEGRLRRDLYMWFANVHEGPSLKCLVESVFTMGELKLTGNSLKGSRPLLSFDEKFSQEPHYRLMQELLTQIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGALFRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNILQKKKIKEAFKMMKKQKEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQTIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGALFRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNILRGDILKKAKKLTAKPIDLKKESDKAETRATLTEKKKIKEAFKMMKKQKEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQTV
ccEEccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHccccCEEEEEEEcccccEEEEEccccccCEEEEEEEEEEccccccccccccccccEEEccccccccHHHHHHHHHHHHHcccccccccccccccEEEEEEEEccEEEEEEEEEEEcccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHccccccccHHHHHHHHHHHHHcccccccccccccccEEccEEEEcccEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHcccccccHHHHHHcccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
*TRLLL*KKSDKF**********************************KWINKQRVLIFASRGISFTDRHLMKN************************ERRWINKQRVLIFASRGISFTDRHLMKNLQNMLPHSRPG*****KDTLTVVNEICEMKNCNKCILFEGRLRRDLYMWFANVHEGPSLKCLVESVFTMGELKLTGNSLKGSRPLLSFDEKFSQEPHYRLMQELLTQIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGALFRQQLKRLAGQKYELKNEEREK******************SNI************************************************************KKAKKQTIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGALFRQQLKRL************************EPADENDISNILR**************************************************************************************************
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MTRLLLFKKSDKFFHRDPHSEITEKAEPKIELPPPSRNSDEPIAKKRKWINKQRVLIFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKDTLTVVNERRWINKQRVLIFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKDTLTVVNEICEMKNCNKCILFEGRLRRDLYMWFANVHEGPSLKCLVESVFTMGELKLTGNSLKGSRPLLSFDEKFSQEPHYRLMQELLTQIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGALFRQQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxPADENDISNILQxxxxxxxxxxxxxxxxxxxxxSKPGLVMKTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGALFRQQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxPADENDISNILRGDILKKAKKLTAKPIDLKKESDKAETRATLTExxxxxxxxxxxxxxxxxxxxxSKPGLVMKTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxV

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Ribosome biogenesis protein BRX1 homolog Required for biogenesis of the 60S ribosomal subunit.confidentQ9DCA5
Ribosome biogenesis protein BRX1 homolog Required for biogenesis of the 60S ribosomal subunit.confidentQ54JN0
Ribosome biogenesis protein BRX1 homolog Required for biogenesis of the 60S ribosomal subunit.confidentQ8TDN6

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0005829 [CC]cytosolprobableGO:0005737, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0044444, GO:0044424
GO:0005730 [CC]nucleolusprobableGO:0005575, GO:0043232, GO:0031981, GO:0043233, GO:0005634, GO:0044464, GO:0031974, GO:0005622, GO:0044446, GO:0070013, GO:0043229, GO:0043228, GO:0044428, GO:0005623, GO:0044424, GO:0043227, GO:0043226, GO:0044422, GO:0043231

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2CXH, chain A
Confidence level:confident
Coverage over the Query: 104-253
View the alignment between query and template
View the model in PyMOL
Template: 2CXH, chain A
Confidence level:probable
Coverage over the Query: 52-84
View the alignment between query and template
View the model in PyMOL
Template: 1I84, chain S
Confidence level:probable
Coverage over the Query: 263-323
View the alignment between query and template
View the model in PyMOL