Psyllid ID: psy3244

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------57

MTRLLLFKKSDKFFHRDPHSEITEKAEPKIELPPPSRNSDEPIAKKRKWINKQRVLIFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKDTLTVVNERRWINKQRVLIFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKDTLTVVNEICEMKNCNKCILFEGRLRRDLYMWFANVHEGPSLKCLVESVFTMGELKLTGNSLKGSRPLLSFDEKFSQEPHYRLMQELLTQIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGALFRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNILQKKKIKEAFKMMKKQKEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQTIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGALFRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNILRGDILKKAKKLTAKPIDLKKESDKAETRATLTEKKKIKEAFKMMKKQKEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQTV

ccEEccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHccccEEEEEEEEcccccEEEEEccccccEEEEEEEEEEEccccccccccccccccEEEcccccccHHHHHHHHHHHHHHcccccccccccccccEEEEEEEEccEEEEEEEEEEEcccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccccccccEEccEEEEcccEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHcccccccHHHHHHcccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc

ccEEEEEEccccccccccccHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccHHHccccccccccccccccEEEEEEEcccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHccccEEEEEEcccccEEEEEEcccccccEEEEEEEcccHHHHccccccccccccEEEccccccccHHHHHHHHHHHHHHccccccccccccEcEEEEEEEEccEEEEEEEEEEEEccccEEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEcccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccccccccccEcEEEEEEEEccEEEEEEEEEEcccHHHHHHHHHHHHcccHHccHHHHHHHcccccEEEcccccHHHHHHHHcccHHHHHHHHHccHHHHHHHHHHHcccccHcHHHHHHHHHHHHHHHHHHHHHccccccEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccc

mtrlllfkksdkffhrdphseitekaepkielpppsrnsdepiakkRKWINKQRVLIFASRGISFTDRHLMKNLQnmlphsrpgtkmerkdtLTVVNERRWINKQRVLIFASRGISFTDRHLMKNLQnmlphsrpgtkmerkDTLTVVNEICEmkncnkcilfegRLRRDLYMWFAnvhegpslKCLVESVFTMGElkltgnslkgsrpllsfdekfsqePHYRLMQELLTQIfgtpkdlpksqpfidhvisfsildnriwfRNYQILSEDGALFRQQLKRLAGQKYELKNEEREKQKQTKEMLqiepadendisNILQKKKIKEAFKMMKKQKEKAKelskpglvmktkdgkkiNKHKLKRLKENLEQRKKMKDRKKKAKKqtifgtpkdlpksqpfidhvisfsildnriwfRNYQILSEDGALFRQQLKRLAGQKYELKNEEREKQKQTKEMLqiepadendisniLRGDILKKAKKltakpidlkkesdKAETRATLTEKKKIKEAFKMMKKQKEKAKelskpglvmktkdgkkiNKHKLKRLKENLEQRKKMKDRKKKAKKQTV

mtrlllfkksdkffhrdphseitekaepkielpppsrnsdepiakkrkwinkqRVLIFASRGISFTDRHLMKNLQNmlphsrpgtkmerkdtltvvnerrwinkqrVLIFASRGISFTDRHLMKNLQnmlphsrpgtkmerKDTLTVVNEICEMKNCNKCILFEGRLRRDLYMWFANVHEGPSLKCLVESVFTMGELKLtgnslkgsrplLSFDEKFSQEPHYRLMQELLTQIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGALFRQQLKRLAGqkyelkneerekqkqtkemlqiepadendisnilQKKKIKEAFKMMKKQKekakelskpglvmktkdgkkinkhklkrlkenleqrkkmkdrkkkakkqtifgtpkdlpksqpfIDHVISFSILDNRIWFRNYQILSEDGALFRQQLKRLAGqkyelkneerekqkqtkemlqiepadendisnilrGDILKKakkltakpidlkkesdkaetratltekkkIKEAFKMMKKQkekakelskpglvmktkdgkkinkhklkrlkenleqrkkmkdrkkkakkqtv

MTRLLLFKKSDKFFHRDPHSEITEKAEPKIELPPPSRNSDEPIAKKRKWINKQRVLIFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKDTLTVVNERRWINKQRVLIFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKDTLTVVNEICEMKNCNKCILFEGRLRRDLYMWFANVHEGPSLKCLVESVFTMGELKLTGNSLKGSRPLLSFDEKFSQEPHYRLMQELLTQIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGALFRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNILqkkkikeafkmmkkqkekakELSKPGLVMKTKDGkkinkhklkrlkENLEQRkkmkdrkkkakkQTIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGALFRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNILRGDILKKAKKLTAKPIDLKKESDKAETRATLTekkkikeafkmmkkqkekakeLSKPGLVMKTKDGkkinkhklkrlkENLEQRkkmkdrkkkakkQTV

***********************************************KWINKQRVLIFASRGISFTDRHLMKN******************TLTVVNERRWINKQRVLIFASRGISFTDRHLMKNL*****************TLTVVNEICEMKNCNKCILFEGRLRRDLYMWFANVHEGPSLKCLVESVFTMGELKLTGNSLK****LLSFD*KF**EPHYRLMQELLTQIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGALFRQQLKRL******************************************************************************************************************PFIDHVISFSILDNRIWFRNYQILSEDGALFRQQLKRL***************************************************************************************************************************************

*TRLLL*KKSDKF****************************************RVLIFASRG***************************************INKQRVLIFASRGISFTDRHLMKNLQNMLPHSRPG*****KDTLTVVNEICEMKNCNKCILFEGRLRRDLYMWFANVHEGPSLKCLVESVFTMGELKLTG**LKGSRPLLSFDEKFSQEPHYRLMQELLTQIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGALFR***KRLAGQKYELKNEEREK******************SNI************************************************************KKAKKQTIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSED***********************************EPADENDISNILR**************************************************************************************************

MTRLLLFKKSDKFFHRDPHSEITEKAEPKIELPPPSRNSDEPIAKKRKWINKQRVLIFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKDTLTVVNERRWINKQRVLIFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKDTLTVVNEICEMKNCNKCILFEGRLRRDLYMWFANVHEGPSLKCLVESVFTMGELKLTGNSLKGSRPLLSFDEKFSQEPHYRLMQELLTQIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGALFRQQLKRLAGQKYELKN***********MLQIEPADENDISNILQKKKIKEAFK************SKPGLVMKTKDGKKINKHKLKRLKENLEQ**************TIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGALFRQQLKRLAGQKYELKN***********MLQIEPADENDISNILRGDILKKAKKLTAKPIDLKKESDKAETRATLTEKKKIKEAFK************SKPGLVMKTKDGKKINKHKLKRLKENLEQ****************

*TRLLLFKKSDKFFHRDPHSEI**K*EPKIELP**SRNSDEPIAKKRKWINKQRVLIFASRGISFTDRHLMKNLQNMLPH*****************ERRWINKQRVLIFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKDTLTVVNEICEMKNCNKCILFEGRLRRDLYMWFANVHEGPSLKCLVESVFTMGELKLTGNSLKGSRPLLSFDEKFSQEPHYRLMQELLTQIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGALFRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNILQKKKIKEAFKMMKKQKEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQTIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGALFRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDISNILRGDILKKAKKLTAKPIDLKKESDK**TRATLTEKKKIKEAFKMMKKQKEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRK********

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MTRLLLFKKSDKFFHRDPHSEITEKAEPKIELPPPSRNSDEPIAKKRKWINKQRVLIFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKDTLTVVNERRWINKQRVLIFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKDTLTVVNEICEMKNCNKCILFEGRLRRDLYMWFANVHEGPSLKCLVESVFTMGELKLTGNSLKGSRPLLSFDEKFSQEPHYRLMQELLTQIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGALFRQQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxPADENDISNILQxxxxxxxxxxxxxxxxxxxxxSKPGLVMKTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGALFRQQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxPADENDISNILRGDILKKAKKLTAKPIDLKKESDKAETRATLTExxxxxxxxxxxxxxxxxxxxxSKPGLVMKTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxV

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		569	2.2.26 [Sep-21-2011]
Q8UVY2		339	Ribosome biogenesis prote	N/A	N/A	0.314	0.528	0.648	9e-72
Q3SZZ0		353	Ribosome biogenesis prote	yes	N/A	0.314	0.507	0.625	1e-68
Q8TDN6		353	Ribosome biogenesis prote	yes	N/A	0.314	0.507	0.625	2e-68
Q4QQT6		352	Ribosome biogenesis prote	yes	N/A	0.314	0.508	0.620	6e-68
Q9DCA5		353	Ribosome biogenesis prote	yes	N/A	0.314	0.507	0.620	8e-68
Q5RAN2		353	Ribosome biogenesis prote	yes	N/A	0.314	0.507	0.620	9e-68
Q9VZE6		359	Ribosome biogenesis prote	yes	N/A	0.307	0.487	0.621	1e-67
P34524		352	Ribosome biogenesis prote	yes	N/A	0.330	0.534	0.456	2e-51
Q08235		291	Ribosome biogenesis prote	yes	N/A	0.300	0.587	0.491	7e-50
Q9HGL6		295	Ribosome biogenesis prote	yes	N/A	0.247	0.477	0.493	5e-46

>sp\|Q8UVY2\|BRX1_XENLA Ribosome biogenesis protein BRX1 homolog OS=Xenopus laevis GN=brix1 PE=2 SV=1	Back alignment and function desciption

 Score =  271 bits (694), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 116/179 (64%), Positives = 149/179 (83%)

Query: 96  VNERRWINKQRVLIFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKDTLTVVNEICEMK 155
           V+E +W NK+RVLIF+SRGI+F  RHLM++L++++PHSR  TKM+RKD L VVNE+CEMK
Sbjct: 44  VSEGKWKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKDKLFVVNEVCEMK 103

Query: 156 NCNKCILFEGRLRRDLYMWFANVHEGPSLKCLVESVFTMGELKLTGNSLKGSRPLLSFDE 215
           NCNKCI FE + ++DLYMW +N  EGPS K LV+++ T+ ELK++GN LKGSRP+LSFD 
Sbjct: 104 NCNKCIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDP 163

Query: 216 KFSQEPHYRLMQELLTQIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGAL 274
            F +EP Y L++ELLTQIFGTP+  P+SQPF+DH+ +FSI DNRIWFRNYQI+ ED AL
Sbjct: 164 AFDREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQIIEEDAAL 222

Required for biogenesis of the 60S ribosomal subunit.
Xenopus laevis (taxid: 8355)

>sp\|Q3SZZ0\|BRX1_BOVIN Ribosome biogenesis protein BRX1 homolog OS=Bos taurus GN=BRIX1 PE=2 SV=1	Back alignment and function description

>sp\|Q8TDN6\|BRX1_HUMAN Ribosome biogenesis protein BRX1 homolog OS=Homo sapiens GN=BRIX1 PE=1 SV=2	Back alignment and function description

>sp\|Q4QQT6\|BRX1_RAT Ribosome biogenesis protein BRX1 homolog OS=Rattus norvegicus GN=Brix1 PE=2 SV=1	Back alignment and function description

>sp\|Q9DCA5\|BRX1_MOUSE Ribosome biogenesis protein BRX1 homolog OS=Mus musculus GN=Brix1 PE=2 SV=3	Back alignment and function description

>sp\|Q5RAN2\|BRX1_PONAB Ribosome biogenesis protein BRX1 homolog OS=Pongo abelii GN=BRIX1 PE=2 SV=1	Back alignment and function description

>sp\|Q9VZE6\|BRX1_DROME Ribosome biogenesis protein BRX1 homolog OS=Drosophila melanogaster GN=CG11583 PE=2 SV=2	Back alignment and function description

>sp\|P34524\|BRX1_CAEEL Ribosome biogenesis protein BRX1 homolog OS=Caenorhabditis elegans GN=K12H4.3 PE=3 SV=1	Back alignment and function description

>sp\|Q08235\|BRX1_YEAST Ribosome biogenesis protein BRX1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BRX1 PE=1 SV=2	Back alignment and function description

>sp\|Q9HGL6\|BRX1_SCHPO Ribosome biogenesis protein brx1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=brx1 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		569
345305782		376	PREDICTED: ribosome biogenesis protein B	0.404	0.611	0.613	3e-86
322794100		342	hypothetical protein SINV_01822 [Solenop	0.421	0.701	0.515	8e-74
307179312		346	Brix domain-containing protein 2-like pr	0.409	0.673	0.512	3e-73
442749031		311	Putative rna-binding protein [Ixodes ric	0.307	0.562	0.685	4e-72
345479218		372	PREDICTED: ribosome biogenesis protein B	0.233	0.357	0.668	5e-72
91090402		326	PREDICTED: similar to brix domain-contai	0.233	0.407	0.685	7e-72
307203531		338	Brix domain-containing protein 2-like pr	0.437	0.736	0.498	8e-72
427798961		306	Putative rna-binding protein, partial [R	0.307	0.571	0.685	6e-71
332022510		345	Brix domain-containing protein 2-like pr	0.224	0.371	0.668	7e-71
340722226		339	PREDICTED: ribosome biogenesis protein B	0.372	0.625	0.522	1e-70

>gi\|345305782\|ref\|XP_001509107.2\| PREDICTED: ribosome biogenesis protein BRX1 homolog [Ornithorhynchus anatinus]	Back alignment and taxonomy information

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 141/230 (61%), Positives = 188/230 (81%)

Query: 45  KKRKWINKQRVLIFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKDTLTVVNERRWINK 104
           KK KW NK+RVL+F+SRGI+F  RHLM++L+ ++PHS+  TKM+RKD L V+NE +W NK
Sbjct: 28  KKGKWKNKERVLVFSSRGINFRTRHLMQDLRTLMPHSKADTKMDRKDKLFVINEGKWKNK 87

Query: 105 QRVLIFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKDTLTVVNEICEMKNCNKCILFE 164
           +RVL+F+SRGI+F  RHLM++L+ ++PHS+  TKM+RKD L V+NE+CE+KNCNKCI FE
Sbjct: 88  ERVLVFSSRGINFRTRHLMQDLRTLMPHSKADTKMDRKDKLFVINEVCEIKNCNKCIYFE 147

Query: 165 GRLRRDLYMWFANVHEGPSLKCLVESVFTMGELKLTGNSLKGSRPLLSFDEKFSQEPHYR 224
            + ++DLYMW +N  +GPS K LV+++ T+ ELK+TGN LKGSRPLLSFD  F +EP Y 
Sbjct: 148 AKKKQDLYMWLSNSPQGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPMFDKEPQYA 207

Query: 225 LMQELLTQIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGAL 274
           L++EL  QIF TP+  PKSQPF+DHV +F+++DNRIWFRNYQI+ ED AL
Sbjct: 208 LLKELFIQIFCTPQYHPKSQPFVDHVFTFTVMDNRIWFRNYQIIEEDAAL 257

Source: Ornithorhynchus anatinus

Species: Ornithorhynchus anatinus

Genus: Ornithorhynchus

Family: Ornithorhynchidae

Order: Monotremata

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi\|322794100\|gb\|EFZ17309.1\| hypothetical protein SINV_01822 [Solenopsis invicta]	Back alignment and taxonomy information

>gi\|307179312\|gb\|EFN67676.1\| Brix domain-containing protein 2-like protein [Camponotus floridanus]	Back alignment and taxonomy information

>gi\|442749031\|gb\|JAA66675.1\| Putative rna-binding protein [Ixodes ricinus]	Back alignment and taxonomy information

>gi\|345479218\|ref\|XP_001604206.2\| PREDICTED: ribosome biogenesis protein BRX1 homolog [Nasonia vitripennis]	Back alignment and taxonomy information

>gi\|91090402\|ref\|XP_970542.1\| PREDICTED: similar to brix domain-containing protein 2 [Tribolium castaneum] gi\|270013383\|gb\|EFA09831.1\| hypothetical protein TcasGA2_TC011978 [Tribolium castaneum]	Back alignment and taxonomy information

>gi\|307203531\|gb\|EFN82564.1\| Brix domain-containing protein 2-like protein [Harpegnathos saltator]	Back alignment and taxonomy information

>gi\|427798961\|gb\|JAA64932.1\| Putative rna-binding protein, partial [Rhipicephalus pulchellus]	Back alignment and taxonomy information

>gi\|332022510\|gb\|EGI62813.1\| Brix domain-containing protein 2-like protein [Acromyrmex echinatior]	Back alignment and taxonomy information

>gi\|340722226\|ref\|XP_003399509.1\| PREDICTED: ribosome biogenesis protein BRX1 homolog [Bombus terrestris]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		569
FB\|FBgn0035524		359	CG11583 [Drosophila melanogast	0.311	0.493	0.614	4.8e-66
UNIPROTKB\|F1NSS7		349	BRIX1 "Uncharacterized protein	0.314	0.512	0.614	1.6e-65
UNIPROTKB\|Q3SZZ0		353	BRIX1 "Ribosome biogenesis pro	0.328	0.529	0.611	5.4e-65
UNIPROTKB\|F1SND4		353	BRIX1 "Uncharacterized protein	0.307	0.495	0.634	1.4e-64
UNIPROTKB\|Q8TDN6		353	BRIX1 "Ribosome biogenesis pro	0.328	0.529	0.606	1.8e-64
RGD\|1308508		352	Brix1 "BRX1, biogenesis of rib	0.328	0.531	0.606	2.9e-64
MGI\|MGI:1915082		353	Brix1 "BRX1, biogenesis of rib	0.328	0.529	0.601	9.9e-64
UNIPROTKB\|E2QZ99		347	BRIX1 "Uncharacterized protein	0.297	0.487	0.605	1.3e-59
POMBASE\|SPBC800.06		295	brx1 "ribosome biogenesis prot	0.295	0.569	0.491	1.4e-46
SGD\|S000005437		291	BRX1 "Nucleolar protein" [Sacc	0.339	0.663	0.451	1.4e-46

FB\|FBgn0035524 CG11583 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 623 (224.4 bits), Expect = 4.8e-66, Sum P(2) = 4.8e-66
 Identities = 110/179 (61%), Positives = 142/179 (79%)

Query:    98 ERRWINKQRVLIFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKDTLTVVNEICEMKNC 157
             + +W+NKQRVL+F++RGIS  DRHLMK+++ ++PH RP +KMER  TL+VVNE+CEMK+C
Sbjct:    43 KEKWVNKQRVLVFSARGISHRDRHLMKDIKTLMPHHRPESKMERSKTLSVVNEMCEMKHC 102

Query:   158 NKCILFEGRLRRDLYMWFANVH--EGPSLKCLVESVFTMGELKLTGNSLKGSRPLLSFDE 215
             NK +LFEGR +RDLYMW +N     GPS K L+E++ TM ELK+TGN L+GSRPLLSFD 
Sbjct:   103 NKAMLFEGRRKRDLYMWISNTSGSTGPSAKFLIENIHTMAELKMTGNCLRGSRPLLSFDS 162

Query:   216 KFSQEPHYRLMQELLTQIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSEDGAL 274
             KF + PH +L++EL  Q +  P   PKSQPF+DHV +F+ LD RIWFRN+QILSEDG L
Sbjct:   163 KFDELPHLKLLKELFVQTYSVPNHHPKSQPFVDHVFTFTYLDKRIWFRNFQILSEDGGL 221

GO:0042273 "ribosomal large subunit biogenesis" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB\|F1NSS7 BRIX1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q3SZZ0 BRIX1 "Ribosome biogenesis protein BRX1 homolog" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SND4 BRIX1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8TDN6 BRIX1 "Ribosome biogenesis protein BRX1 homolog" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|1308508 Brix1 "BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:1915082 Brix1 "BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QZ99 BRIX1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

POMBASE\|SPBC800.06 brx1 "ribosome biogenesis protein Brx1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

SGD\|S000005437 BRX1 "Nucleolar protein" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54JN0	BRX1_DICDI	No assigned EC number	0.5030	0.2899	0.5061	yes	N/A
Q9DCA5	BRX1_MOUSE	No assigned EC number	0.6201	0.3145	0.5070	yes	N/A
Q8TDN6	BRX1_HUMAN	No assigned EC number	0.6256	0.3145	0.5070	yes	N/A
Q3SZZ0	BRX1_BOVIN	No assigned EC number	0.6256	0.3145	0.5070	yes	N/A
Q5RAN2	BRX1_PONAB	No assigned EC number	0.6201	0.3145	0.5070	yes	N/A
Q9VZE6	BRX1_DROME	No assigned EC number	0.6214	0.3075	0.4874	yes	N/A
Q4QQT6	BRX1_RAT	No assigned EC number	0.6201	0.3145	0.5085	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		569
COG5154		283	COG5154, BRX1, RNA-binding protein required for 60	3e-50
pfam04427		176	pfam04427, Brix, Brix domain	5e-35
smart00879		180	smart00879, Brix, The Brix domain is found in a nu	2e-30
COG5154		283	COG5154, BRX1, RNA-binding protein required for 60	4e-07
pfam04427		176	pfam04427, Brix, Brix domain	3e-05
smart00879		180	smart00879, Brix, The Brix domain is found in a nu	5e-05
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.002
PTZ00108		1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	0.004

>gnl\|CDD\|227483 COG5154, BRX1, RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

 Score =  174 bits (443), Expect = 3e-50
 Identities = 83/174 (47%), Positives = 115/174 (66%)

Query: 97  NERRWINKQRVLIFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKDTLTVVNEICEMKN 156
           N   ++ KQ  LI +SRG+S+  RHLMK+L  ++PHS+   K++ K  L  +NE+ E+ N
Sbjct: 23  NSAGFVPKQTSLILSSRGVSYRIRHLMKDLSRLVPHSKKEQKLDMKKNLGQLNELAELYN 82

Query: 157 CNKCILFEGRLRRDLYMWFANVHEGPSLKCLVESVFTMGELKLTGNSLKGSRPLLSFDEK 216
           CN  + FE R R DLY+  A +  GP++K  + ++ TM EL  TGNSLKGSRP+LSFD++
Sbjct: 83  CNNMLFFESRKRSDLYLMGARIPNGPTVKFRMHNLHTMDELNFTGNSLKGSRPVLSFDKE 142

Query: 217 FSQEPHYRLMQELLTQIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQILSE 270
           F   PH +  +ELL  IFG PK   +S+PFID V+ F ILD +IW R Y+I  E
Sbjct: 143 FEDIPHLKYAKELLEHIFGIPKGARRSKPFIDKVLCFFILDGKIWVRCYEIGRE 196

Length = 283

>gnl\|CDD\|218084 pfam04427, Brix, Brix domain	Back alignment and domain information

>gnl\|CDD\|214879 smart00879, Brix, The Brix domain is found in a number of eukaryotic proteins	Back alignment and domain information

>gnl\|CDD\|227483 COG5154, BRX1, RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|218084 pfam04427, Brix, Brix domain	Back alignment and domain information

>gnl\|CDD\|214879 smart00879, Brix, The Brix domain is found in a number of eukaryotic proteins	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		569
KOG2971\|consensus		299		100.0
COG5154		283	BRX1 RNA-binding protein required for 60S ribosoma	100.0
KOG2971\|consensus		299		100.0
COG5154		283	BRX1 RNA-binding protein required for 60S ribosoma	100.0
PF04427		191	Brix: Brix domain; InterPro: IPR007109 The Brix do	99.97
smart00879		180	Brix Brix domain. The Brix domain is found in a nu	99.96
KOG2781\|consensus		290		99.94
KOG3031\|consensus		307		99.92
KOG2963\|consensus		405		99.89
KOG2780\|consensus		302		99.76
COG5106		316	RPF2 Uncharacterized conserved protein [Function u	99.53
PRK03972		208	ribosomal biogenesis protein; Validated	99.52
PF04427		191	Brix: Brix domain; InterPro: IPR007109 The Brix do	99.44
COG2136		191	IMP4 Predicted exosome subunit/U3 small nucleolar	99.39
smart00879		180	Brix Brix domain. The Brix domain is found in a nu	99.22
KOG2781\|consensus		290		97.73
KOG2963\|consensus		405		97.4
KOG2780\|consensus		302		96.37
PRK00933		165	ribosomal biogenesis protein; Validated	94.68
KOG3031\|consensus		307		90.24

>KOG2971\|consensus	Back alignment and domain information

Probab=100.00  E-value=1.3e-70  Score=542.15  Aligned_cols=233  Identities=52%  Similarity=0.926  Sum_probs=213.7

Q ss_pred             cCCCCCCC---CCchhhhhcccccceeEEEEeecCCchhhhHHHHHHhhhCCCCCCCCCcccccccccccccccccCceE
Q psy3244          31 ELPPPSRN---SDEPIAKKRKWINKQRVLIFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKDTLTVVNERRWINKQRV  107 (569)
Q Consensus        31 ~~~~~~~~---s~~~~~~~~~~~n~~rvl~~~~rg~~~~~rhlm~d~~~l~ph~k~~~k~~rkd~~~~~~~~~~eNkkKv  107 (569)
                      +.-||+|+   ||+..+++++|+|+||||||||||||||+||||+|+..||||++.++|++|++                
T Consensus        25 ~~~~pqr~~~~~~~~~pk~~~w~NK~rvlv~ssRgis~R~RhLm~di~~Llph~k~dsk~d~~k----------------   88 (299)
T KOG2971|consen   25 APEPPQRNLEESDDFVPKKEKWKNKERVLVLSSRGISFRTRHLMKDISSLLPHSKKDSKLDRKK----------------   88 (299)
T ss_pred             CCCCCcccccccccccccccccccceeEEEEecCCchHHHHHHHHHHHHhcccccccchhhhcc----------------
Confidence            34455885   78888999999999999999999999999999999999999999987665432                


Q ss_pred             EEEecCCCCHhHHHHHHHHHHhCCCCCCCCccccCCccchHHHHHhhcCCCeEEEEEecCCCCCeEEEeecCCCCeeEEE
Q psy3244         108 LIFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKDTLTVVNEICEMKNCNKCILFEGRLRRDLYMWFANVHEGPSLKCL  187 (569)
Q Consensus       108 LIl~SRgvS~r~RhLmkDL~~LmPhskk~~K~drkn~l~~Lnelae~~~cn~~LffE~rKKrplyLwisr~P~GPTikF~  187 (569)
                                                          .+.+|||+|++++||+|+|||+|+++|+|||||++|+||||+|+
T Consensus        89 ------------------------------------~l~~lnel~elkncn~~lfFesrkr~DlYlWm~~~p~GpSvkFl  132 (299)
T KOG2971|consen   89 ------------------------------------KLGVLNELAELKNCNSCLFFESRKRKDLYLWMSNSPNGPSVKFL  132 (299)
T ss_pred             ------------------------------------hHHHHHHHHHHhcCCeEEEEEeeccCceeEEEecCCCCCceEEe
Confidence                                                35789999999999999999999999999999999999999999


Q ss_pred             eeeeeehhhhcccCCCCCCCCCeEEecCCCCCchhhHHHHHHHhhhcCCCCCCCCcCCCCcEEEEEEEeCCEEEEeeccc
Q psy3244         188 VESVFTMGELKLTGNSLKGSRPLLSFDEKFSQEPHYRLMQELLTQIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQI  267 (569)
Q Consensus       188 VeN~~Tm~ELk~tGN~lkgSrPlLvFd~~Fds~phlkLlKeLL~~~F~~P~~~~kskpfiDhVisFs~~DdkIwFR~YqI  267 (569)
                      |+|+|||+|+++||||++||||+|+||.+||+.|||+++|+||+|+|++|.+|++|+||+|||++|+|+||+||||||||
T Consensus       133 v~n~hTM~ElkmtgN~lkgsrplLsFd~~Fd~~pHlkl~Kell~q~fgiP~~hrkSkpf~Dhvf~Fsi~D~~IWfRnyqI  212 (299)
T KOG2971|consen  133 VHNVHTMAELKMTGNCLKGSRPLLSFDKAFDELPHLKLLKELLEQIFGIPKHHRKSKPFVDHVFTFSILDGKIWFRNYQI  212 (299)
T ss_pred             hhhhhhHHHhCCccccccCCcceeecccccccchHHHHHHHHHHHHcCCCCCCcccCCccceEEEEEEecCeEEEEEeEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -ccCCchH-----------------------------------HHHHHHHHhchhhhHHHHHHHHHHHhhhhhccCCCCC
Q psy3244         268 -LSEDGAL-----------------------------------FRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADE  311 (569)
Q Consensus       268 -~~srG~L-----------------------------------vRalLKr~kA~KY~~RkEqK~drK~rK~e~~~~~lp~  311 (569)
                       ..+|..|                                   +|+.+|+++|++| .|++++.+++.+..++   .+++
T Consensus       213 ~~~ed~~L~EiGPRfvl~~ikif~gsFgG~~lYenp~yvspn~~r~~~k~~~a~k~-~k~ka~~~rkir~~~~---~l~~  288 (299)
T KOG2971|consen  213 SEEEDKTLIEIGPRFVLNVIKIFEGSFGGPTLYENPKYVSPNMIRAVIKKQAAGKY-QKVKAKTERKIRALEN---VLEE  288 (299)
T ss_pred             ccccCcceeeeccHHHHhHHHHHhccCCCceeecCccccCHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHhcC---CCCC
Confidence             4555322                                   9999999999999 9999999999999877   7888


Q ss_pred             Cc-hhhhhc
Q psy3244         312 ND-ISNILQ  319 (569)
Q Consensus       312 DE-LddVF~  319 (569)
                      || ++++|.
T Consensus       289 d~vf~~~~~  297 (299)
T KOG2971|consen  289 DPVFADMAK  297 (299)
T ss_pred             Cchhhhhhc
Confidence            98 555554

>COG5154 BRX1 RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG2971\|consensus	Back alignment and domain information

>COG5154 BRX1 RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF04427 Brix: Brix domain; InterPro: IPR007109 The Brix domain is found in a number of eukaryotic proteins including some from Saccharomyces cerevisiae and Homo sapiens, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins	Back alignment and domain information

>smart00879 Brix Brix domain	Back alignment and domain information

>KOG2781\|consensus	Back alignment and domain information

>KOG3031\|consensus	Back alignment and domain information

>KOG2963\|consensus	Back alignment and domain information

>KOG2780\|consensus	Back alignment and domain information

>COG5106 RPF2 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PRK03972 ribosomal biogenesis protein; Validated	Back alignment and domain information

>PF04427 Brix: Brix domain; InterPro: IPR007109 The Brix domain is found in a number of eukaryotic proteins including some from Saccharomyces cerevisiae and Homo sapiens, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins	Back alignment and domain information

>COG2136 IMP4 Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain [Translation, ribosomal structure and biogenesis / RNA processing and modification]	Back alignment and domain information

>smart00879 Brix Brix domain	Back alignment and domain information

>KOG2781\|consensus	Back alignment and domain information

>KOG2963\|consensus	Back alignment and domain information

>KOG2780\|consensus	Back alignment and domain information

>PRK00933 ribosomal biogenesis protein; Validated	Back alignment and domain information

>KOG3031\|consensus	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		569
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-17
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	1e-04
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 85.7 bits (211), Expect = 2e-17
 Identities = 101/577 (17%), Positives = 192/577 (33%), Gaps = 121/577 (20%)

Query: 4   LLLFKKS---DKFF---HRDPHSEITE--KAEPKIELPPPSRNSDEPIAKKRKWINKQRV 55
            LL K+     KF     R  +  +    K E +     PS  +   I ++ +  N  +V
Sbjct: 70  TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ----PSMMTRMYIEQRDRLYNDNQV 125

Query: 56  LIFASRGISFTDR-HLMKNLQNMLPHSRPGTK-----MER--KDTLT--VVNERRWINKQ 105
             FA   +S   R      L+  L   RP        +    K  +   V    +   K 
Sbjct: 126 --FAKYNVS---RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180

Query: 106 RVLIF-ASRGISFTDRHLMKNLQNMLPHSRPGTKMERKDTLTVVNEICEMKNCNKCILFE 164
              IF  +     +   +++ LQ +L    P        +  +   I  ++   + +L  
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 165 GRLRRDLYM----WFANVHEGPSLKC--LV----ESVFT-MGELKLTGNSLKGSRPLLSF 213
                 L +      A      +L C  L+    + V   +     T  SL      L+ 
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300

Query: 214 DEKFSQEPHYRLMQELLTQIFGT-PKDLP----KSQPFIDHVISFSILDNRIWFRNYQIL 268
           DE          ++ LL +     P+DLP     + P    +I+ SI D    + N++ +
Sbjct: 301 DE----------VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350

Query: 269 SEDGALFRQQLKRLAGQKYELKNEEREKQKQTKEMLQIEPADENDI-SNILQ----KKKI 323
           + D      +L  +   +  L   E  + ++  + L + P   + I + +L         
Sbjct: 351 NCD------KLTTI--IESSLNVLEPAEYRKMFDRLSVFPPSAH-IPTILLSLIWFDVIK 401

Query: 324 KEAFKMMKKQKEKAKELSKPGLVMKTKDGKKINKHKLKRLKENLEQRKKMKDRKKKAKKQ 383
            +   ++        +L K  LV K      I+         ++    K+K   + A  +
Sbjct: 402 SDVMVVV-------NKLHKYSLVEKQPKESTISIP-------SIYLELKVKLENEYALHR 447

Query: 384 TI---FGTPKDLPKSQPFIDHVISFSILDNRI-WFRNYQI----LSEDGALFRQ------ 429
           +I   +  PK          +      LD        + +      E   LFR       
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPY------LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501

Query: 430 --QLK-RLAGQKYE----LKNEEREKQKQTKEMLQIEPADENDISNILRGDILKKAKK-- 480
             + K R     +     + N  ++ +     +   +P  E  ++ IL  D L K ++  
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL--DFLPKIEENL 559

Query: 481 LTAKPIDLKKESDKAETRATLTEKKKI-KEAFKMMKK 516
           + +K  DL +        A + E + I +EA K +++
Sbjct: 560 ICSKYTDLLR-------IALMAEDEAIFEEAHKQVQR 589

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		569
2cxh_A		217	Probable BRIX-domain ribosomal biogenesis protein;	99.9
1w94_A		156	MIL, probable BRIX-domain ribosomal biogenesis pro	98.82
2cxh_A		217	Probable BRIX-domain ribosomal biogenesis protein;	94.65

>2cxh_A Probable BRIX-domain ribosomal biogenesis protein; 18S rRNA, IMP4, U3 snoRNP, ribosomal biogenesis binding, structural genomics, NPPSFA; 1.80A {Aeropyrum pernix} SCOP: c.51.1.2	Back alignment and structure

Probab=99.90  E-value=2.3e-23  Score=204.08  Aligned_cols=147  Identities=15%  Similarity=0.160  Sum_probs=127.2

Q ss_pred             ccCceEEEEecCCCCHhHHHHHHHHHHhCCCCCCCCccccCCccchHHHHHhhcCCCeEEEEEecCCCCCeEEEeecCCC
Q psy3244         102 INKQRVLIFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKDTLTVVNEICEMKNCNKCILFEGRLRRDLYMWFANVHEG  181 (569)
Q Consensus       102 eNkkKvLIl~SRgvS~r~RhLmkDL~~LmPhskk~~K~drkn~l~~Lnelae~~~cn~~LffE~rKKrplyLwisr~P~G  181 (569)
                      .-.+|+||++||++|+++++|++||..++||+.+.++  .+..+.+|++.|..++|+++|+++.+++.|.+||++++|+|
T Consensus        31 ~~~pKvLITTSr~pS~r~r~fakeL~~~lPns~~i~R--gk~sLkeL~e~a~~~~~tdlivV~e~rg~p~~L~~~hlP~G  108 (217)
T 2cxh_A           31 VGGYRILVTTSRRPSPRIRSFVKDLSATIPGAFRFTR--GHYSMEELAREAIIRGADRIVVVGERRGNPGIIRVYAVEGP  108 (217)
T ss_dssp             --CCEEEEEESSSCCHHHHHHHHHHHTTSTTEEECCC--TTCCHHHHHHHHHHTTEEEEEEEEEETTEEEEEEEEECCSS
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHHHHHCCCCEEeec--CCcCHHHHHHHHHhCCCCEEEEEEecCCCCcEEEEEECCCC
Confidence            3478999999999999999999999999999975442  34578999999999999999999999999999999999999


Q ss_pred             ---C-eeEEEeeeeeehhhhcccCCCCCCCCCeEEecCCCCCchhhHHHHHHHhhhcCCCCCCCCcCCC-CcEEEEE
Q psy3244         182 ---P-SLKCLVESVFTMGELKLTGNSLKGSRPLLSFDEKFSQEPHYRLMQELLTQIFGTPKDLPKSQPF-IDHVISF  253 (569)
Q Consensus       182 ---P-TikF~VeN~~Tm~ELk~tGN~lkgSrPlLvFd~~Fds~phlkLlKeLL~~~F~~P~~~~kskpf-iDhVisF  253 (569)
                         | |++|+|.|+++++|++.+|||+.+++|.|+ + +|++. ++.++++||+++|++|....-+..+ .|-++.+
T Consensus       109 ~~~P~Ta~F~I~nv~l~~ei~~~g~~~~~~rP~L~-~-nF~t~-~g~~i~~~f~~lFp~P~~~~~~~~~~~d~~~~i  182 (217)
T 2cxh_A          109 ERPDNIVSFIVKGVSLSRERRWGLPSLRGGEVLVA-R-PLDSG-VAVEFADAFVIAFHARLKPPEAAGYVEAVIESL  182 (217)
T ss_dssp             SCCEEEEEEEEEEEECHHHHTCCCCCCCSCCEEEE-E-ESSSS-THHHHHHHHHHHHCCBSSCCSSSCEEEEEEEEE
T ss_pred             CCCCcEEEEEEeeEEehhhhccCCCccCCCCceEE-e-eecCc-hHHHHHHHHHHHcCCCCCChhhhcccccEEEEE
Confidence               9 999999999999999999999999999999 4 59988 7889999999999998874321111 2555555

PyMOL of 2cxh

>1w94_A MIL, probable BRIX-domain ribosomal biogenesis protein; archaeal IMP4-BRIX domain, IMP4 domain; 2.0A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.2	Back alignment and structure

>2cxh_A Probable BRIX-domain ribosomal biogenesis protein; 18S rRNA, IMP4, U3 snoRNP, ribosomal biogenesis binding, structural genomics, NPPSFA; 1.80A {Aeropyrum pernix} SCOP: c.51.1.2	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		569
d2cxha1		180	c.51.1.2 (A:13-192) Probable ribosomal biogenesis	2e-15

>d2cxha1 c.51.1.2 (A:13-192) Probable ribosomal biogenesis protein {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 180	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 72.6 bits (178), Expect = 2e-15
 Identities = 27/166 (16%), Positives = 58/166 (34%), Gaps = 13/166 (7%)

Query: 106 RVLIFASRGISFTDRHLMKNLQNMLPHSRPGTKMER-KDTLTVVNEICEMKNCNKCILFE 164
           R+L+  SR  S   R  +K+L   +P +    +  R   ++  +     ++  ++ ++  
Sbjct: 3   RILVTTSRRPSPRIRSFVKDLSATIPGA---FRFTRGHYSMEELAREAIIRGADRIVVVG 59

Query: 165 GRLRRDLYMWFANVHEGPSLKCLVESVFTMGELKLTGNSLKGSRPLLSFDEKFSQEPHYR 224
            R R +  +      EGP     + S F +  + L+    +   P L   E     P   
Sbjct: 60  ER-RGNPGIIRVYAVEGPERPDNIVS-FIVKGVSLS-RERRWGLPSLRGGEVLVARPLDS 116

Query: 225 LMQ----ELLTQIFGTPKDLPKSQPFIDHVISFSILDNRIWFRNYQ 266
            +     +     F      P++  ++        LD R     ++
Sbjct: 117 GVAVEFADAFVIAFHARLKPPEAAGYV--EAVIESLDARTVAVTFR 160

PyMOL of d2cxha1

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		569
d2cxha1		180	Probable ribosomal biogenesis protein {Archaeon Ae	99.87
d1w94a1		154	Probable ribosomal biogenesis protein {Methanobact	99.58
d2cxha1		180	Probable ribosomal biogenesis protein {Archaeon Ae	94.79

>d2cxha1 c.51.1.2 (A:13-192) Probable ribosomal biogenesis protein {Archaeon Aeropyrum pernix [TaxId: 56636]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Brix domain
domain: Probable ribosomal biogenesis protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.87  E-value=1.2e-22  Score=191.24  Aligned_cols=154  Identities=15%  Similarity=0.067  Sum_probs=130.4

Q ss_pred             eEEEEecCCCCHhHHHHHHHHHHhCCCCCCCCccccCCccchHHHHHhhcCCCeEEEEEecCCCCCeEEEeecCCCC---
Q psy3244         106 RVLIFASRGISFTDRHLMKNLQNMLPHSRPGTKMERKDTLTVVNEICEMKNCNKCILFEGRLRRDLYMWFANVHEGP---  182 (569)
Q Consensus       106 KvLIl~SRgvS~r~RhLmkDL~~LmPhskk~~K~drkn~l~~Lnelae~~~cn~~LffE~rKKrplyLwisr~P~GP---  182 (569)
                      |+||++||++|+++++|++||+.++||+...++  .++.+++|.++|..+||+++|+++.+++.| +||++++|+||   
T Consensus         3 kvLITTSr~ps~~~r~f~kdL~~v~Pns~~~~R--~k~~lk~i~~~a~~~~~t~liiv~e~~~~p-~l~i~~lP~GP~~~   79 (180)
T d2cxha1           3 RILVTTSRRPSPRIRSFVKDLSATIPGAFRFTR--GHYSMEELAREAIIRGADRIVVVGERRGNP-GIIRVYAVEGPERP   79 (180)
T ss_dssp             EEEEEESSSCCHHHHHHHHHHHTTSTTEEECCC--TTCCHHHHHHHHHHTTEEEEEEEEEETTEE-EEEEEEECCSSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhCCCCEEeec--CCCcHHHHHHHHHHCCCCeEEEEEccCCCC-cEEEEECCCCCCCc
Confidence            799999999999999999999999999986443  456899999999999999999999998887 89999999999   


Q ss_pred             --eeEEEeeeeeehhhhcccCCC---CCCCCCeEEecCCCCCchhhHHHHHHHhhhcCCCCCCCCcCCCCcEEEEEEEeC
Q psy3244         183 --SLKCLVESVFTMGELKLTGNS---LKGSRPLLSFDEKFSQEPHYRLMQELLTQIFGTPKDLPKSQPFIDHVISFSILD  257 (569)
Q Consensus       183 --TikF~VeN~~Tm~ELk~tGN~---lkgSrPlLvFd~~Fds~phlkLlKeLL~~~F~~P~~~~kskpfiDhVisFs~~D  257 (569)
                        |+.|.|.||++.+|+.....+   ...+.|.|+|++ |.+..+.. +..+|...|+.|....      .+|++|.+++
T Consensus        80 ~~t~~F~l~nv~l~~e~~~~~~~~~~~t~~~p~lilnn-f~t~Lg~~-~~~~f~~lf~~p~~~~------~~vvt~~n~~  151 (180)
T d2cxha1          80 DNIVSFIVKGVSLSRERRWGLPSLRGGEVLVARPLDSG-VAVEFADA-FVIAFHARLKPPEAAG------YVEAVIESLD  151 (180)
T ss_dssp             EEEEEEEEEEEECHHHHTCCCCCCCSCCEEEEEESSSS-THHHHHHH-HHHHHCCBSSCCSSSC------EEEEEEEEEE
T ss_pred             cceEEEEEEEEEEehhhccccCCCCCCccccchhHhcc-cchHHHHH-HHHHHHhhCCCchhcC------cEEEEEEecC
Confidence              999999999999999753222   234578899998 98876655 4668899998655543      3899999999


Q ss_pred             CEEEEeecccccC
Q psy3244         258 NRIWFRNYQILSE  270 (569)
Q Consensus       258 dkIwFR~YqI~~s  270 (569)
                      |.||+|+|++..+
T Consensus       152 d~if~~~~~~~~~  164 (180)
T d2cxha1         152 ARTVAVTFRYGGA  164 (180)
T ss_dssp             TTEEEEEEECSSS
T ss_pred             CeEEEEEEecCCC
Confidence            9999999987543

PyMOL of d2cxha1

>d1w94a1 c.51.1.2 (A:1-154) Probable ribosomal biogenesis protein {Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d2cxha1 c.51.1.2 (A:13-192) Probable ribosomal biogenesis protein {Archaeon Aeropyrum pernix [TaxId: 56636]}	Back information, alignment and structure